Citrus Sinensis ID: 005913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670
Protein Sequence
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHcccEEEEcccHHHHHHHHHHHccccHHHHHHHHcEEEEEccccccccccHHHHHHHHcccHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHccccHHHHHcccccccccccccHHHHHccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccEEEcccccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccccccccccEEEcccccccEEEcccccccEEEEEEcccccEEEEEcccccEEEEccccccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHccEEEEEccHHHHHHHHHHHHccccHHHHHHHHHEEEEEccccccccccHHHHHHHccccHHHHcccccccccccccccHHHHHHccccccccHHHHHHHccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccccccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEccccccccccccEEEEEccccccEEEEEEcccccEEEEccccccc
Coil and Loop (DISEMBL)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRnkssnntnpidilndpelsKFFRtfsesedgparyqdeySKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKlegvlspshleEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINerinfqvspgqpssisddAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRlektglisdsekaegenkeaeidenkkrpveggkqgaSIKKLKKdkainataktsrleantvstaprvkpdlalpvmpteVEQSILEDLRNRvhlssaalpsvsfytfinthnglncasisqdgslvaggfsdsslKVWDMAKLGQQAVssglqgendttprediigpngrkrsytlyqghsgpvysasfsplgdfilsssadTTIRLWSTKLNANlvcykghnypvwdvqfnpqghyfassshdrtariwsmdriqplrimaghlsdvdcvRWHINCnyiatgssdktvrlwdvssgecvRIFIGHRSMILSlamspdgrymasgdedgTIMMWDlasgrcvtplmghtscVWTLAYScegsllasgsadctvKLWDVTTSTKVLKTEEksgtnrlrslktlptkstpvyslqFSRRNLLFAAGALSKTS
Flexible Loop (DISEMBL)
MDELQVVEFVATYLKKKGFSEAENALQAEiqrnkssnntnpidilNDPELSKFFRTfsesedgparyqDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKtglisdsekaegenkeaeidenkkrpveggkqgasikklkkdkainataktsrleantvstaprvkpdlalpvMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVssglqgendttprediigpngRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNyiatgssdktvrLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTtstkvlkteeksgtnrlrslktlptkstpvyslqfsrRNLLFAAGALSKTS
Low Complexity Region (SEG)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS
Disordered region (IsUnstruct)
*****VVEFVATYLKK*****************************************************EYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQV************EIVTLIGS******QINQKEVHWGLLE*****************************************************************************************SILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK*******************************YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL***********************VYSLQFSRRNLLFAA*******
Disordered Region (DISOPRED)
****QVVEFVATYLKKKGFSEAE***************************************GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG*****************************VHWGLLEDSLENR*************************************************************************LPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK**EK*GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK**
Disordered Region (DISEMBL)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDS*************ENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS
Disordered Region (DISPRO)
*DELQVVEFVATYLKKKGFSEAENALQAEIQ*****************ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEK*************N*******************************************TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	670	2.2.26 [Sep-21-2011]
Q8C092	801	Transcription initiation	yes	no	0.877	0.734	0.380	1e-117
Q15542	800	Transcription initiation	yes	no	0.879	0.736	0.380	1e-117
O13282	643	Transcription initiation	yes	no	0.877	0.914	0.338	1e-107
P38129	798	Transcription initiation	yes	no	0.953	0.800	0.324	1e-101
P49846	704	Transcription initiation	yes	no	0.874	0.832	0.338	2e-93
O74319	642	Transcription initiation	no	no	0.908	0.948	0.341	7e-92
Q8SQS4	556	Transcription initiation	yes	no	0.791	0.953	0.312	6e-78
Q91WQ5	589	TAF5-like RNA polymerase	no	no	0.556	0.633	0.407	9e-75
O75529	589	TAF5-like RNA polymerase	no	no	0.556	0.633	0.409	3e-74
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.459	0.201	0.329	7e-47

>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1

 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/647 (38%), Positives = 360/647 (55%), Gaps = 59/647 (9%)

Query: 42  IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
           + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +
Sbjct: 191 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMY 249

Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
           ++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++
Sbjct: 250 LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLR 309

Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAAN 220
           I + SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  
Sbjct: 310 IYRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKR 366

Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKK 280
           + N+ +V +GLL                        KE EI+       E G+      K
Sbjct: 367 EANKSKVFFGLL------------------------KEPEIEVPLDDEDEEGENEEGKPK 402

Query: 281 LKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRN------RVHL 334
            KK K  +  +K+ + +       P   P   +P +P   +   L+ + N      RV L
Sbjct: 403 KKKPKKDSIGSKSKKQD-------PNAPPQNRIP-LPELKDSDKLDKIMNMKETTKRVRL 454

Query: 335 SSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG--- 391
               LPS+ FYTF+N + GL    ++ D SL+AGGF+DS+++VW +     ++V      
Sbjct: 455 GPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDL 514

Query: 392 --LQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
             +  E+D    E I+          LY GHSGPVY ASFSP  +++LSSS D T+RLWS
Sbjct: 515 SLIDKESDDV-LERIMDEKTASELKILY-GHSGPVYGASFSPDRNYLLSSSEDGTVRLWS 572

Query: 450 TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509
            +    LV YKGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV+
Sbjct: 573 LQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVN 632

Query: 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
           C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH+  I SL  SP+GR++A+G  DG
Sbjct: 633 CTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDG 692

Query: 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629
            +++WD+  G  V  L GHT  V +L +S +G +LASGS D TV+LWD   + + L+T++
Sbjct: 693 RVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDD 752

Query: 630 -KSGTNRLR--------SLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667
             + T  +          L T  TKSTPV  L F+RRNL+ AAGA S
Sbjct: 753 FTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYS 799

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.
Mus musculus (taxid: 10090)

>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/646 (38%), Positives = 359/646 (55%), Gaps = 57/646 (8%)

Query: 42  IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
           + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +
Sbjct: 190 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMY 248

Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
           ++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++
Sbjct: 249 LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLR 308

Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAAN 220
           I + SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  
Sbjct: 309 ISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKR 365

Query: 221 QINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKK 280
           + N+ +V +GLL                        KE EI+       E G+      K
Sbjct: 366 EANKSKVFFGLL------------------------KEPEIEVPLDDEDEEGENEEGKPK 401

Query: 281 LKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRN------RVHL 334
            KK K  +  +K+ + +       P   P   +P +P   +   L+ + N      RV L
Sbjct: 402 KKKPKKDSIGSKSKKQD-------PNAPPQNRIP-LPELKDSDKLDKIMNMKETTKRVRL 453

Query: 335 SSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMA----KLGQQAVSS 390
               LPS+ FYTF+N + GL    ++ D SL+AGGF+DS+++VW +     +  +QA   
Sbjct: 454 GPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDL 513

Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
            L  +      E I+          LY GHSGPVY ASFSP  +++LSSS D T+RLWS 
Sbjct: 514 SLIDKESDDVLERIMDEKTASELKILY-GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSL 572

Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
           +    LV YKGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV+C
Sbjct: 573 QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNC 632

Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
            R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH+  I SL  SP+GR++A+G  DG 
Sbjct: 633 TRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGR 692

Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE- 629
           +++WD+  G  V  L GHT  V +L +S +G +LASGS D TV+LWD   + + L+T++ 
Sbjct: 693 VLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDF 752

Query: 630 KSGTNRLR--------SLKTLPTKSTPVYSLQFSRRNLLFAAGALS 667
            + T  +          L T  TKSTPV  L F+RRNL+ AAGA S
Sbjct: 753 TTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYS 798

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Homo sapiens (taxid: 9606)

>sp|O13282|TAF5_SCHPO Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf5 PE=1 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/691 (33%), Positives = 365/691 (52%), Gaps = 103/691 (14%)

Query: 9   FVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQ 68
            V  YL KKG+S  E  L+ E   +  S             + +  ++  E+ D    Y 
Sbjct: 15  IVLDYLAKKGYSRTEAMLRLEASGSGVS-------------VEEKLKSIEETPDA---YT 58

Query: 69  DEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMH 128
             Y+ LR W  SSL+LYK EL  +L+P+F+H +++L+++ H + A+ F+  F++DH  +H
Sbjct: 59  HTYTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELFKDDHTDLH 118

Query: 129 LRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGI 185
             D++ L+ +  PSH+ E   A   R +K  +   + +++LLL +L +  S   + ++ +
Sbjct: 119 DFDVKNLKSLSLPSHVAEDRTAQQYRQNKYQLHFSRITFDLLLHFLFENVSNGGSIIIKL 178

Query: 186 INERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLEN------- 238
           IN+ I+  + PG+P+ + +              A  IN++E   G+   S E        
Sbjct: 179 INQHIDIHIVPGRPTVLEN--------------AKVINEQE---GITGQSFERGDAQLQP 221

Query: 239 -RLEKTGLISDSEKA-----EGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAK 292
            +L++  +  + EK      E E+   + D N + P         +K+ +K    NA   
Sbjct: 222 VKLQQMPMDKEMEKIVEMDLEEEDMMHQNDPNNQSP-------KLLKEFRKLHEPNAEDA 274

Query: 293 TSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSS-AALPSVSFYTFINTH 351
            SR   + +   P    D+      +EVE   ++D   R+HL   A+LPSV  YTF +T+
Sbjct: 275 PSR---DYIPLPPHKGVDIL-----SEVEA--VKDWSKRLHLGPRASLPSVCMYTFHHTN 324

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII-GPNGR 410
           N +NCA  S D +++A GF +S +++W             ++ +  + P+   +   +G 
Sbjct: 325 NNMNCAEFSPDSTMIACGFQESYIRLW------------SIKADKKSLPKSTSVEDSDGS 372

Query: 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ 470
            R  +    HSGPVY  +FSP   ++LS S D + RLWS      LV YKGH  PVWDV 
Sbjct: 373 VRLLS----HSGPVYGTTFSPDNKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVA 428

Query: 471 FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVR 530
           F P GHYFA++SHD+TA++WS D I PLR+ AGHLSDVDCV +H N  Y+ TGSSDKT R
Sbjct: 429 FGPFGHYFATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCR 488

Query: 531 LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS 590
           LWDV  G  VR+F GH   + ++A++PDG  MAS D +G I +WD+ +GR +  + GH  
Sbjct: 489 LWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRG 548

Query: 591 CVWTLAYSCEGSLLASGSADCTVKLWDV------------TTSTKVLKTEEKSGTNRLRS 638
            +++L++S E ++L SG +DCTV+ WDV             T + V     K+ T    +
Sbjct: 549 NIYSLSFSRESTVLVSGGSDCTVRAWDVFKTNYNNPVSSSLTGSVVTPFSAKTSTFNEVN 608

Query: 639 LKTLP-------TKSTPVYSLQFSRRNLLFA 662
             T P       TK TP++++ F+RRNL  A
Sbjct: 609 WSTSPDQMVALYTKQTPIFNVSFTRRNLCLA 639

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 244/753 (32%), Positives = 378/753 (50%), Gaps = 114/753 (15%)

Query: 9   FVATYLKKKGFSEAENALQAEIQRNKSSNN-----------------------------T 39
            V  YL KKG+   E  L+AE  R  +  N                             +
Sbjct: 63  IVLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPIS 122

Query: 40  NPIDILN--DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVF 97
           NP ++ +  D E         E  + P  Y   YS L++W  SSL++YK EL +++YP+F
Sbjct: 123 NPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIF 182

Query: 98  IHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSK 157
           I+ F++LVAK  +  AR FF+ F  D +  H  ++ +L  V S  H++E E A + +  K
Sbjct: 183 IYLFLNLVAKNPVY-ARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHK 241

Query: 158 VNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQD 217
             I + + +  LLL +L++ +S     II+  IN  + P    S++   ++   I    D
Sbjct: 242 YRITMSKTTLNLLLYFLNENESIGGSLIIS-VINQHLDPNIVESVTAREKLADGIKVLSD 300

Query: 218 AAN-------QINQKEVHWGLL--EDSLENRLEKTGLISDSEKAE-----------GENK 257
           + N       ++N   V  G    ++     +E    I D ++ +           G N 
Sbjct: 301 SENGNGKQNLEMNSVPVKLGPFPKDEEFVKEIETELKIKDDQEKQLNQQTAGDNYSGANN 360

Query: 258 EAEIDENKKRPVEGGKQGASI--------------KKLKKDKAINATAKTSRLEANTVST 303
              + E K    E  K                   +K + +  ++   K S L +     
Sbjct: 361 RTLLQEYKAMNNEKFKDNTGDDDKDKIKDKIAKDEEKKESELKVDGEKKDSNLSSPARDI 420

Query: 304 APRVKPDLALPVMPTEVEQSILEDLRNRVHLSSA--ALPSVSFYTFINTHNGLNCASISQ 361
            P + P  AL +   ++E   +++ R+ + L +   ALPSV  YTF NT+  ++C   S 
Sbjct: 421 LP-LPPKTALDL---KLEIQKVKESRDAIKLDNLQLALPSVCMYTFQNTNKDMSCLDFSD 476

Query: 362 DGSLVAGGFSDSSLKVW--DMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           D  + A GF DS +K+W  D + L    ++     +++    + ++G             
Sbjct: 477 DCRIAAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPTCKTLVG------------- 523

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSG VYS SFSP   ++LS S D T+RLWS   +  LV YKGHN+PVWDV F+P GHYFA
Sbjct: 524 HSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFA 583

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           ++SHD+TAR+WS D I PLRI AGHL+DVDCV +H N  Y+ TGSSDKT R+WDVS+G+ 
Sbjct: 584 TASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDS 643

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYS 598
           VR+F+GH + ++S+A+ PDGR++++G EDG I +WD+ +G+ +  + GH  + +++L+YS
Sbjct: 644 VRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYS 703

Query: 599 CEGSLLASGSADCTVKLWDVTTSTKVLKTE------------------EKSGTNRLRS-- 638
            EG++L SG AD TV++WD+  +T     E                  +     R R+  
Sbjct: 704 KEGNVLISGGADHTVRVWDLKKATTEPSAEPDEPFIGYLGDVTASINQDIKEYGRRRTVI 763

Query: 639 -----LKTLPTKSTPVYSLQFSRRNLLFAAGAL 666
                + +  TK TPV+ ++FSR NL  A GA 
Sbjct: 764 PTSDLVASFYTKKTPVFKVKFSRSNLALAGGAF 796

Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by TAF1), facilitation of DNA opening and initiation of transcription. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1

 Score =  343 bits (881), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 213/630 (33%), Positives = 336/630 (53%), Gaps = 44/630 (6%)

Query: 49  ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKG 108
           EL+KF     +S D    Y+  Y +LR++   SLD+YKHEL  VLYP+ +  +  ++A G
Sbjct: 101 ELAKFID--DDSFDAQ-HYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKILASG 157

Query: 109 HIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYE 168
             ++A+ F   ++ D +  ++  L  L  +  P  L E +   ++   K  I++ + S+ 
Sbjct: 158 LREKAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVVAMEQDKFVIRMSRDSHS 217

Query: 169 LLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSN-QDAANQINQKEV 227
           L  +++   +   +  I+++ ++F    G      +  + V   GS+  +A  Q N+  V
Sbjct: 218 LFKRHIQDRRQEVVADIVSKYLHFDTYEGMAR---NKLQCVATAGSHLGEAKRQDNKMRV 274

Query: 228 HWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAI 287
           ++              GL+      E + +            +         K KK K  
Sbjct: 275 YY--------------GLLK-----EVDFQTLTTPAPAPEEEDDDPDAPDRPKKKKPKKD 315

Query: 288 NATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLR---NRVHLSSAALPSVSF 344
              +K S+ + N    AP +   + LP +    +   L+ LR    R+ LS   LPS  F
Sbjct: 316 PLLSKKSKSDPN----APSIDR-IPLPELKDSDKLLKLKALREASKRLALSKDQLPSAVF 370

Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQAVSSGLQGENDTTPRE 402
           YT +N+H G+ CA IS D +++A GF DSS+++W +  AKL     +  L+  +  +   
Sbjct: 371 YTVLNSHQGVTCAEISDDSTMLACGFGDSSVRIWSLTPAKLRTLKDADSLRELDKESADI 430

Query: 403 DIIGPNGRKRSYTL-YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461
           ++   + R    T    GH+GPVY  +F+P  + +LS S D+TIRLWS    + +V Y+G
Sbjct: 431 NVRMLDDRSGEVTRSLMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRG 490

Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA 521
           H YPVWDV+F P G+YF S S+D+TAR+W+ D  Q LR+  GHLSDVDCV++H N NY+A
Sbjct: 491 HVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVA 550

Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581
           TGSSD+TVRLWD  +G+ VR+  GH+  + SLA S  GRY+ASG  D  I++WDL++G  
Sbjct: 551 TGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSL 610

Query: 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK-------VLKTEEKSGTN 634
           VT L+ HTS V T+ +S +G++LA+   D  + LWD    T+        +   +     
Sbjct: 611 VTTLLRHTSTVTTITFSRDGTVLAAAGLDNNLTLWDFHKVTEDYISNHITVSHHQDENDE 670

Query: 635 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664
            +  ++T P+K++P  SL F+RRNLL   G
Sbjct: 671 DVYLMRTFPSKNSPFVSLHFTRRNLLMCVG 700

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in helping to anchor Taf4 within the TFIID complex. May be involved in transducing signals from various transcriptional regulators to the RNA polymerase II transcription machinery.

Drosophila melanogaster (taxid: 7227)

>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf73 PE=1 SV=1

 Score =  338 bits (868), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 228/668 (34%), Positives = 350/668 (52%), Gaps = 59/668 (8%)

Query: 8   EFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARY 67
           + V  YL KKG+S  E  L+ EI    SS    P       E   +    SE+      Y
Sbjct: 17  KIVLDYLFKKGYSRTEAMLRLEI----SSVGAIP------EEQQDWHIGASET------Y 60

Query: 68  QDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMM 127
              Y  LR W   +LDLYK +L  VLYP+F+H ++DL+ K   + A  FF +FR +HE++
Sbjct: 61  VQVYILLRDWIDGTLDLYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVL 120

Query: 128 HLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ---STKMLG 184
           H  D++ L  +   S +EE+E A   R +K  I   + +++LL+Q+L + +   S  ++ 
Sbjct: 121 HGYDIRALAQLKIASDVEEIEIAQLYRKNKYRINFTRSTFDLLVQFLFENEVNGSGIIIR 180

Query: 185 IINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLE-- 241
           ++N+ I+ +++  Q     D + + V  +   ++    I+++E   G  E  L+   +  
Sbjct: 181 LLNQYIDIKITMPQVEGKEDPNVQAVYEMDEAKNEQTIISEQEGIPGHSEQLLDYNKQSI 240

Query: 242 KTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGAS-IKKLKKDKAINATAKTSRLEANT 300
           + GL   SE+     K   + E K + VEG  +  + I    K+     T K + +  +T
Sbjct: 241 QLGLRPLSEEVVTTLKN--LLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLINEST 298

Query: 301 VSTAPRVKPDLALPVMPTEVEQ-----SILEDLRNRVHLSSAAL-PSVSFYTFINTHNGL 354
           + +      D  LP  PT+++      S+LE  +N + L   A  PSV  YT  NT + +
Sbjct: 299 LESPS----DPPLP--PTKMKDIDYFVSLLESEQNSLILGKNATDPSVFMYTMHNTLSAV 352

Query: 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414
           NCA+ S D S+ A G +DSS+ ++     G Q +   +  +N+   +  +IG        
Sbjct: 353 NCAAFSDDASMFALGCADSSIHLYSSTNNGPQPL---VGSQNEPLQKSSLIG-------- 401

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ 474
                H+ PV+  S SP  +FILS S D   RLWS    + +V Y GHN P+WDVQF+P 
Sbjct: 402 -----HTRPVFGVSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPF 456

Query: 475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534
           G+YFA++SHD+TAR+W ++   PLR+  GH +DVDCV +H N  Y+ATGSSD T R+WDV
Sbjct: 457 GYYFATASHDQTARLWDVEHAAPLRVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDV 516

Query: 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594
            +G  VR+F  H S + +L MS DG  +AS DE G I +WDL S       + H+S V++
Sbjct: 517 RTGGTVRVFNAHHSPVSALCMSADGLSLASADESGIIKVWDLRSSNQHVSFVKHSSIVYS 576

Query: 595 LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF 654
           L++S +  +L SG AD  V  WD+T    +   E+         L    TK+T + +L F
Sbjct: 577 LSFSYDNKILVSGGADTDVNFWDLTYRNNLSDGEQSP------LLFNFKTKNTIIQNLSF 630

Query: 655 SRRNLLFA 662
           +RRN   A
Sbjct: 631 TRRNYCLA 638

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8SQS4|TAF5_ENCCU Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TAF5 PE=1 SV=1

 Score =  292 bits (747), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 187/598 (31%), Positives = 313/598 (52%), Gaps = 68/598 (11%)

Query: 71  YSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLR 130
           Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH      
Sbjct: 23  YVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YNKSE 81

Query: 131 DLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERI 190
           ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+N+ +
Sbjct: 82  EIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHL 141

Query: 191 NFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSE 250
           + +V  G  S         +++ +  D    +  +E    +L D               E
Sbjct: 142 DIKVYVGPKSEERPQGIETSVVDAEIDLTTFLVSRECEDAILGD---------------E 186

Query: 251 KAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPD 310
           +   ++ E  + + +K+           +++K   ++                    KP+
Sbjct: 187 QYRYDHLETYVLQLRKQ-----------REMKPKDSV-------------------YKPN 216

Query: 311 LALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
            +   +  E+E+  L+DL  RV ++   LPS+  YT  NT+ GL  A IS D  L+A GF
Sbjct: 217 ASQ--IHAEIEK--LKDLCKRVAVNKNNLPSICCYTIHNTYEGLTAAEISNDLKLMACGF 272

Query: 371 SDSSLKVWDMAK--LGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428
            DS ++V+ +    L +   SS L   +  T  E+     G   SY L  GHSGPVY   
Sbjct: 273 KDSYVEVYSLTNESLKKLKSSSELAKSDIKTLNEEKFEEVGS--SYKLV-GHSGPVYGLK 329

Query: 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488
           F     F++SSS D T+ LWS  L   L  YK H +PVW V   P  ++FAS + DR A 
Sbjct: 330 FFSSNKFLVSSSQDCTVCLWSLDLLCLLAVYKAHAFPVWCVDVAPNDYFFASGAGDRQAI 389

Query: 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548
           +WS+   +P R++   LSDV  V++H N +Y+ TGSSD  VR+ D+S+   VRIF GH  
Sbjct: 390 VWSVMTSKPERLIISSLSDVTAVKFHPNSSYLFTGSSDHRVRMHDISTASVVRIFCGHTD 449

Query: 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS 608
            +  + +S  G+++ASG +D T+++WD+ S + +   +GH + V+++++   GS+LAS  
Sbjct: 450 TVTCMDVSHCGKFLASGSKDRTVLLWDIQSSKLLGKYVGHENTVFSVSFCFYGSVLASCG 509

Query: 609 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL 666
           AD +V+LWD        +T+ K G      L T  TK+TP+  ++F  RN++   G  
Sbjct: 510 ADNSVRLWD--------RTDHKGGC-----LGTYYTKNTPLLCVKFGYRNIISCTGPF 554

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1

 Score =  281 bits (720), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 158/388 (40%), Positives = 220/388 (56%), Gaps = 15/388 (3%)

Query: 282 KKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS 341
           + D  + A+  +SR E +++       P++  P++  E    +L++   RV     +L +
Sbjct: 204 RTDYQLYASGGSSRTENSSLE-----PPEVPSPILQNEAALEVLQESIKRVKDGPPSLTT 258

Query: 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQ---AVSSGLQGEN 396
           + FY F NT   LN A IS D  L+A GF +S +K+W +   KL  +     +S ++   
Sbjct: 259 ICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSKKLKSEPHHVDTSRIRLAC 318

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL 456
           DT   E+    N       L +GH GPVYS  F      +LS S D +IR W      N 
Sbjct: 319 DTLEEEENEEDNTGTEMKIL-RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNT 377

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
           V Y+GH YPVWDV  +P   YFAS SHDRTAR+WS DR  PLRI AGHL+DVDCV++H N
Sbjct: 378 VLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPN 437

Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
            NY+ATGS+DKTVRLW    G  VR+F GHR  +LSL+ SP+G+Y+AS  ED  + +WDL
Sbjct: 438 SNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDL 497

Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL 636
           ASG     L GHT  + +LA+S +  L+AS S D +V++WD+ ++     T     +  L
Sbjct: 498 ASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRST--CCNTPADGSSGEL 555

Query: 637 RSLKTLPTKSTPVYSLQFSRRNLLFAAG 664
             + T   + + V S+QF   NLL   G
Sbjct: 556 VGVYT--GQMSNVLSVQFMACNLLLVTG 581

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Mus musculus (taxid: 10090)

>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1

 Score =  280 bits (716), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/388 (40%), Positives = 214/388 (55%), Gaps = 15/388 (3%)

Query: 282 KKDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS 341
           + D  + A+  +SR E N +       PD+  P++  E    +L++   RV     +L +
Sbjct: 204 RTDYQLYASGSSSRSENNGLE-----PPDMPSPILQNEAALEVLQESIKRVKDGPPSLTT 258

Query: 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLG---QQAVSSGLQGEN 396
           + FY F NT   LN A IS D  L+A GF +S +K+W +   KL     Q   S +    
Sbjct: 259 ICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLAC 318

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL 456
           D    ED    N       L +GH GPVYS  F      +LS S D +IR W      N 
Sbjct: 319 DILEEEDDEDDNAGTEMKIL-RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNT 377

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
           V Y+GH YPVWD+  +P   YFAS SHDRTAR+WS DR  PLRI AGHL+DVDCV++H N
Sbjct: 378 VLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPN 437

Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
            NY+ATGS+DKTVRLW    G  VR+F GHR  +LSLA SP+G+Y+AS  ED  + +WDL
Sbjct: 438 SNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDL 497

Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL 636
           ASG     L GHT  + +L +S +  L+AS S D +V++WD+  +           ++ L
Sbjct: 498 ASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNT--YCSAPADGSSSEL 555

Query: 637 RSLKTLPTKSTPVYSLQFSRRNLLFAAG 664
             + T   + + V S+QF   NLL   G
Sbjct: 556 VGVYT--GQMSNVLSVQFMACNLLLVTG 581

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Homo sapiens (taxid: 9606)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  189 bits (479), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 174/343 (50%), Gaps = 35/343 (10%)

Query: 344  FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG------------ 391
             YT     N +N  + S DG+ +A G  D ++++WD++      +  G            
Sbjct: 1151 LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNP 1210

Query: 392  -----LQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIR 446
                   G +D T R   +      +    +QGH+  V S  F+P G  + S S+D T+R
Sbjct: 1211 DGSTLASGSSDQTVR---LWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVR 1267

Query: 447  LWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506
            LW    +  L  ++GH   V  V FNP G   AS S D+T R+W +   + L    GH S
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTS 1327

Query: 507  DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566
             V  V +  +   +A+GS D+TVRLW +SSGEC+  F+GH + + S+  SPDG  +ASG 
Sbjct: 1328 WVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGS 1387

Query: 567  EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626
             D T+ +W ++SG+C+  L GH + V ++ +S +G+LLASGS D TV+LW++++      
Sbjct: 1388 GDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSG----- 1442

Query: 627  TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
                        L TL      V S+ FS   L+ A+G+  +T
Sbjct: 1443 ----------ECLYTLHGHINSVRSVAFSSDGLILASGSDDET 1475

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	670
359475836	676	PREDICTED: transcription initiation fact	0.998	0.989	0.817	0.0
359475838	667	PREDICTED: transcription initiation fact	0.988	0.992	0.811	0.0
255548758	670	protein with unknown function [Ricinus c	0.994	0.994	0.813	0.0
449455529	674	PREDICTED: transcription initiation fact	0.997	0.991	0.800	0.0
224092584	675	predicted protein [Populus trichocarpa]	0.998	0.991	0.805	0.0
224143295	675	predicted protein [Populus trichocarpa]	0.998	0.991	0.804	0.0
356514986	663	PREDICTED: transcription initiation fact	0.985	0.995	0.780	0.0
356507277	669	PREDICTED: transcription initiation fact	0.991	0.992	0.781	0.0
357466033	715	Transcription initiation factor TFIID su	0.995	0.932	0.717	0.0
79520288	669	transcription initiation factor TFIID su	0.991	0.992	0.774	0.0

>gi|359475836|ref|XP_003631761.1| PREDICTED: transcription initiation factor TFIID subunit 5-like isoform 2 [Vitis vinifera] gi|296082065|emb|CBI21070.3| unnamed protein product [Vitis vinifera]

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/675 (81%), Positives = 604/675 (89%), Gaps = 6/675 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEI---QRNKSSNNTNPIDILNDPELSKFFRTF 57
           M+E ++ + V  YLKKKGF + E A Q E    Q  ++ N+++ I    DP+++K   +F
Sbjct: 1   MEEEEIEKAVIAYLKKKGFKQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAKHILSF 60

Query: 58  SESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFF 117
           SESE+ PARY + YSKLRSWTYSSLDLYKHELL VLYPVFIHCFMDLVAKGHIQEAR FF
Sbjct: 61  SESENIPARYHEGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFF 120

Query: 118 NNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKT 177
           N+FREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR SKV+IKICQYSYELLLQYLHKT
Sbjct: 121 NSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYELLLQYLHKT 180

Query: 178 QSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLE 237
           QS  MLG+INE INFQVSPGQP+SISDDAE+VTLIGS+QD ANQINQKE+HWGLLE SLE
Sbjct: 181 QSITMLGVINEHINFQVSPGQPASISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLE 240

Query: 238 NRLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRL 296
            RLEK G L+SDSEKAEGE KE + +ENKKR  EGGKQG+SIKKLKKDK + A  KT+R 
Sbjct: 241 ERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARP 300

Query: 297 EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNC 356
           EAN VS APRVKP+LALPVMPTEVEQSILEDLRNRV LSS ALPSVSFYTFINTHN LNC
Sbjct: 301 EANAVSMAPRVKPELALPVMPTEVEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNC 360

Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
           +SIS DGSLVAGGFSDSSLKVWDM+KLGQQA +S +QG+ND  P E I+G +G KRSYTL
Sbjct: 361 SSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTL 420

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +QGHSGPVYSA+FSPLGDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GH
Sbjct: 421 FQGHSGPVYSATFSPLGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGH 480

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WHINCNYIATGSSDKTVRLWDV S
Sbjct: 481 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQS 540

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           GECVRIFIGHRSM+LSLAMSPDG+YMASGDEDGTIMMWDL+SGRCV PLMGH SCVW+LA
Sbjct: 541 GECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLA 600

Query: 597 YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSG-TNRLRSLKTLPTKSTPVYSLQF 654
           +SCEGSLLASGSAD TVKLWDVTTSTKV ++EE KSG T+RLRSLKTLPTKSTPVYSL+F
Sbjct: 601 FSCEGSLLASGSADSTVKLWDVTTSTKVPRSEENKSGNTSRLRSLKTLPTKSTPVYSLRF 660

Query: 655 SRRNLLFAAGALSKT 669
           SRRNLLFAAGALSK+
Sbjct: 661 SRRNLLFAAGALSKS 675

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475838|ref|XP_002285276.2| PREDICTED: transcription initiation factor TFIID subunit 5-like isoform 1 [Vitis vinifera]

 Score = 1137 bits (2940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/673 (81%), Positives = 597/673 (88%), Gaps = 11/673 (1%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEI---QRNKSSNNTNPIDILNDPELSKFFRTF 57
           M+E ++ + V  YLKKKGF + E A Q E    Q  ++ N+++ I    DP+++K     
Sbjct: 1   MEEEEIEKAVIAYLKKKGFKQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAK----- 55

Query: 58  SESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFF 117
             SE+ PARY + YSKLRSWTYSSLDLYKHELL VLYPVFIHCFMDLVAKGHIQEAR FF
Sbjct: 56  --SENIPARYHEGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFF 113

Query: 118 NNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKT 177
           N+FREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR SKV+IKICQYSYELLLQYLHKT
Sbjct: 114 NSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYELLLQYLHKT 173

Query: 178 QSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLE 237
           QS  MLG+INE INFQVSPGQP+SISDDAE+VTLIGS+QD ANQINQKE+HWGLLE SLE
Sbjct: 174 QSITMLGVINEHINFQVSPGQPASISDDAEVVTLIGSSQDDANQINQKEIHWGLLEGSLE 233

Query: 238 NRLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRL 296
            RLEK G L+SDSEKAEGE KE + +ENKKR  EGGKQG+SIKKLKKDK + A  KT+R 
Sbjct: 234 ERLEKAGGLLSDSEKAEGEVKETDTEENKKRSAEGGKQGSSIKKLKKDKVVGAAGKTARP 293

Query: 297 EANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNC 356
           EAN VS APRVKP+LALPVMPTEVEQSILEDLRNRV LSS ALPSVSFYTFINTHN LNC
Sbjct: 294 EANAVSMAPRVKPELALPVMPTEVEQSILEDLRNRVQLSSMALPSVSFYTFINTHNSLNC 353

Query: 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
           +SIS DGSLVAGGFSDSSLKVWDM+KLGQQA +S +QG+ND  P E I+G +G KRSYTL
Sbjct: 354 SSISHDGSLVAGGFSDSSLKVWDMSKLGQQAATSIMQGDNDLAPTEQILGTSGGKRSYTL 413

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
           +QGHSGPVYSA+FSPLGDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GH
Sbjct: 414 FQGHSGPVYSATFSPLGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGH 473

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WHINCNYIATGSSDKTVRLWDV S
Sbjct: 474 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHINCNYIATGSSDKTVRLWDVQS 533

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
           GECVRIFIGHRSM+LSLAMSPDG+YMASGDEDGTIMMWDL+SGRCV PLMGH SCVW+LA
Sbjct: 534 GECVRIFIGHRSMVLSLAMSPDGQYMASGDEDGTIMMWDLSSGRCVMPLMGHMSCVWSLA 593

Query: 597 YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR 656
           +SCEGSLLASGSAD TVKLWDVTTSTKV ++EE   T+RLRSLKTLPTKSTPVYSL+FSR
Sbjct: 594 FSCEGSLLASGSADSTVKLWDVTTSTKVPRSEENGNTSRLRSLKTLPTKSTPVYSLRFSR 653

Query: 657 RNLLFAAGALSKT 669
           RNLLFAAGALSK+
Sbjct: 654 RNLLFAAGALSKS 666

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548758|ref|XP_002515435.1| protein with unknown function [Ricinus communis] gi|223545379|gb|EEF46884.1| protein with unknown function [Ricinus communis]

 Score = 1134 bits (2932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/672 (81%), Positives = 598/672 (88%), Gaps = 6/672 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MDE QVV+FV TYLKKKGF +AE A   E+QRN  +N+   +D+ +DP+LS    + S+S
Sbjct: 1   MDEEQVVKFVETYLKKKGFKQAELAFHDEVQRNSRANS---VDVHSDPDLSTLLLSLSQS 57

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           ED PARY DEY KLRSWT+SSLDLYK ELL VLYPVF+HC+MDLVAK HIQEARTFFNNF
Sbjct: 58  EDTPARYHDEYGKLRSWTHSSLDLYKPELLRVLYPVFVHCYMDLVAKAHIQEARTFFNNF 117

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHE MH RDLQKLEGVLSPSHLEEMEFAH+LR SKVNIKICQYS ELL+QYL  T+ST
Sbjct: 118 REDHETMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRNTKST 177

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            MLGI+NE INFQVSPGQPSSISDD E+VTLIGS+QDAANQIN+KE+HWGLLEDS+E  L
Sbjct: 178 MMLGIVNEHINFQVSPGQPSSISDDDEVVTLIGSSQDAANQINKKEIHWGLLEDSMEEHL 237

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EK G L SDSEK EGE KE ++DE+KKR +EGGKQG S+KK+KKDKA +ATAK  R E N
Sbjct: 238 EKAGGLHSDSEKTEGEAKEGDMDESKKRSIEGGKQGTSVKKMKKDKATSATAKVVRPETN 297

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           +  TAPRVKP+L LPV+PTEVEQSILEDLRNRV LSSAALPSVSFYTFINTHNGLNC+SI
Sbjct: 298 SAPTAPRVKPELPLPVIPTEVEQSILEDLRNRVQLSSAALPSVSFYTFINTHNGLNCSSI 357

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DGSLVAGGFSDSSLKVWDMAKLGQQ  +S LQG NDT   E  +G NG KRSYTL+QG
Sbjct: 358 SHDGSLVAGGFSDSSLKVWDMAKLGQQGSNSVLQGANDTAASEHFLGANGAKRSYTLFQG 417

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPVYSA+FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYFA
Sbjct: 418 HSGPVYSATFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA 477

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S+SHDRTARIWSMDR+QPLRI+AGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGEC
Sbjct: 478 SASHDRTARIWSMDRLQPLRILAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGEC 537

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
           VRIFIGHRSMILSLAMSPDGR+MAS DEDGTIMMWDL+SGRCV+PLMGH SCVWTLA+SC
Sbjct: 538 VRIFIGHRSMILSLAMSPDGRFMASADEDGTIMMWDLSSGRCVSPLMGHNSCVWTLAFSC 597

Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSGT-NRLRSLKTLPTKSTPVYSLQFSRR 657
           EGSLLASGSADCTVKLWDVT+STKV K EE KSG+ NRLRSLKTLPTKSTPVYSL+FSRR
Sbjct: 598 EGSLLASGSADCTVKLWDVTSSTKVTKAEESKSGSANRLRSLKTLPTKSTPVYSLRFSRR 657

Query: 658 NLLFAAGALSKT 669
           NLLFAAG LSK+
Sbjct: 658 NLLFAAGVLSKS 669

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455529|ref|XP_004145505.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Cucumis sativus] gi|449485181|ref|XP_004157092.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Cucumis sativus]

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/673 (80%), Positives = 600/673 (89%), Gaps = 5/673 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MDE  +  FV+ YLKKKGF E E A Q E+++NK+ N+++P   + D +++K   +FSE+
Sbjct: 1   MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKT-NSSSPSSFI-DVDVAKHLLSFSEA 58

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E+ PA+Y + YSKLRSW Y+SLDLYKHELL VLYPVFIHCFMDLVAKGHIQEARTFFN F
Sbjct: 59  ENIPAKYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRF 118

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHEMMHLRD+QKLEGVLSPSHLEEMEFAHSLR  KVNIKICQYSYE+LLQYLHKTQ+T
Sbjct: 119 REDHEMMHLRDIQKLEGVLSPSHLEEMEFAHSLRQGKVNIKICQYSYEMLLQYLHKTQTT 178

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            +LGIINERINFQV PGQPSSISDDAE+VTL GS QD ANQIN+KEVHWGLLEDSLE RL
Sbjct: 179 VILGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKEVHWGLLEDSLEERL 238

Query: 241 EKT-GLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EK  GL+SDSEKAEGE K+ ++DENKKR  EGGKQG SIKK+KKDK  +AT KT R EAN
Sbjct: 239 EKAAGLLSDSEKAEGETKDGDVDENKKRTAEGGKQGGSIKKVKKDKTASATGKTLRAEAN 298

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           + S APRVKP+LALP++ TEVE+SILEDLRNRV LSS ALPSVSFYTFINTHNGLNC+SI
Sbjct: 299 SASMAPRVKPELALPIISTEVEESILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSI 358

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DG+LVAGGFSDSSLKVWDMAKLGQQA ++ LQ END +  + + G    KR YTL+QG
Sbjct: 359 SYDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTLFQG 418

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPV+SA+FSP+GDF+LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYFA
Sbjct: 419 HSGPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA 478

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGEC
Sbjct: 479 SCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGEC 538

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
           VRIFIGHRSMILSLAMSPDGR+MASGDEDGTIMMWDL++GRCVTPL+GHTSCVWTLA+SC
Sbjct: 539 VRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSC 598

Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSGT-NRLRSLKTLPTKSTPVYSLQFSRR 657
           EGSLLASGSADCTVKLWDVT+STK  +T+E K+GT NRLRSLKTLPTKSTPVYSL+FSRR
Sbjct: 599 EGSLLASGSADCTVKLWDVTSSTKPPRTDENKTGTPNRLRSLKTLPTKSTPVYSLRFSRR 658

Query: 658 NLLFAAGALSKTS 670
           NLLFAAGALSK +
Sbjct: 659 NLLFAAGALSKNA 671

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092584|ref|XP_002309672.1| predicted protein [Populus trichocarpa] gi|222855648|gb|EEE93195.1| predicted protein [Populus trichocarpa]

 Score = 1105 bits (2858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/674 (80%), Positives = 603/674 (89%), Gaps = 5/674 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKS--SNNTNPIDILNDPELSKFFRTFS 58
           MDE  VV+FV TYLKKKGF +AE A Q EIQ+ +   +N+ N I+I +DP+LS    + S
Sbjct: 1   MDEEAVVKFVETYLKKKGFKQAELAFQEEIQQQQQKQNNSKNAINIHSDPDLSTLLHSLS 60

Query: 59  ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFN 118
           + ED PARYQ+EYSKLR+W YSSLDLYKHELL VLYPVF+HC+MD+VAKGHIQ+AR FFN
Sbjct: 61  QPEDSPARYQEEYSKLRTWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQDARNFFN 120

Query: 119 NFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ 178
           +FREDHEMMH RDLQKLEGVLSPSHLEEMEFAH+LR SKVNIKICQYS EL++QYL K++
Sbjct: 121 SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSDELMMQYLRKSK 180

Query: 179 STKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLEN 238
           ST +LGI+NE INFQVSPGQP SISDD + VTLIGS+QDAANQIN+KE+HWGLLEDSLE 
Sbjct: 181 STIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE 240

Query: 239 RLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLE 297
           RLEKTG  +SDSEK EGE KE ++DENKKR ++GGKQGASIKK KKDKA +ATAK  RLE
Sbjct: 241 RLEKTGGFLSDSEKTEGETKEGDMDENKKRSMDGGKQGASIKKSKKDKAASATAKAVRLE 300

Query: 298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCA 357
           ANTV  APRVKP+L LPVMP EVEQSILEDLRNRV LSS  LPSVSFYTFINTHNGLNC+
Sbjct: 301 ANTVPAAPRVKPELPLPVMPAEVEQSILEDLRNRVQLSSTTLPSVSFYTFINTHNGLNCS 360

Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           SIS DGSLVAGGFSDSSLKVWDMAKLGQQA +S LQGEND  P E ++GPN  KRSYTL+
Sbjct: 361 SISHDGSLVAGGFSDSSLKVWDMAKLGQQAGNSILQGENDAAPSEHVLGPNSGKRSYTLF 420

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           QGHSGPV+SA+FSPLGDFILSSSADTT+RLWST+LNANLVCYKGHNYPVWDVQF+P GHY
Sbjct: 421 QGHSGPVHSATFSPLGDFILSSSADTTVRLWSTELNANLVCYKGHNYPVWDVQFSPVGHY 480

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
           FAS+SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SG
Sbjct: 481 FASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSG 540

Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           ECVRIFIGHRSMILSLAMSPDGRYMASGDEDG+IMMWDL+SGRC++P+MGH SCVW+LA+
Sbjct: 541 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGSIMMWDLSSGRCISPMMGHHSCVWSLAF 600

Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSG-TNRLRSLKTLPTKSTPVYSLQFS 655
           SCE SLLASGSADCTVKLWDVTTSTK  KTEE KSG T+RLR LKTLPTKSTPV +L+FS
Sbjct: 601 SCESSLLASGSADCTVKLWDVTTSTKPAKTEESKSGNTHRLRFLKTLPTKSTPVSTLRFS 660

Query: 656 RRNLLFAAGALSKT 669
           RRNLLFAAGALS++
Sbjct: 661 RRNLLFAAGALSRS 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143295|ref|XP_002324907.1| predicted protein [Populus trichocarpa] gi|222866341|gb|EEF03472.1| predicted protein [Populus trichocarpa]

 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/674 (80%), Positives = 595/674 (88%), Gaps = 5/674 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTN--PIDILNDPELSKFFRTFS 58
           MDE  VV+FV TYLKKKGF +AE A   EIQ+     N +   I I +DP+LS    + S
Sbjct: 1   MDEEAVVKFVETYLKKKGFKQAELAFHEEIQQQHQQQNNSNNAISIHSDPDLSSLLHSLS 60

Query: 59  ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFN 118
           + ED PARYQDEYSKLRSW YSSLDLYKHELL VLYPVF+HC+MD+VAKGHIQEAR FFN
Sbjct: 61  QPEDSPARYQDEYSKLRSWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQEARKFFN 120

Query: 119 NFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ 178
           +FREDHEMMH RDLQKLEGVLSPSHLEEMEFAH+LR SKVNIKICQYS ELL+QYL K++
Sbjct: 121 SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRKSK 180

Query: 179 STKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLEN 238
            T +LGI+NE INFQVSPGQP SISDD + VTLIGS+QDAANQIN+KE+HWGLLEDSLE 
Sbjct: 181 WTIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE 240

Query: 239 RLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLE 297
           RLEKTG  +SD+EK EGE KE ++DENKKR ++GGKQGASIKK KKDKA +AT K +R E
Sbjct: 241 RLEKTGGFLSDTEKTEGETKEGDMDENKKRSIDGGKQGASIKKSKKDKAASATTKIARPE 300

Query: 298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCA 357
           ANTVS APRVKP+L LPVMPTEVEQSILEDLRNRV LSS  LPSVSFYTFINTHNGLNC+
Sbjct: 301 ANTVSAAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVTLPSVSFYTFINTHNGLNCS 360

Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           SIS DGSL+AGGFSDSSLKVWDMAKLG QA +S LQGENDT P E    PN  KRSYTL+
Sbjct: 361 SISHDGSLIAGGFSDSSLKVWDMAKLGHQAGNSILQGENDTAPSEQGQSPNSGKRSYTLF 420

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           QGHSGPV+SA+FSPLGDFILSSSADTT+RLWSTKLNANLVCYKGHNYPVWDVQF+P G Y
Sbjct: 421 QGHSGPVHSATFSPLGDFILSSSADTTVRLWSTKLNANLVCYKGHNYPVWDVQFSPVGQY 480

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
           FAS+SHDRTARIWSMDRIQPLRIMAGHLSDVDC++WH NCNYIATGSSDKTVRLWDV SG
Sbjct: 481 FASASHDRTARIWSMDRIQPLRIMAGHLSDVDCLQWHANCNYIATGSSDKTVRLWDVQSG 540

Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           ECVRIFIGHRSMILSLAMSPDGRYMAS DEDGTIMMWDL+SGRC++PL+GH SCVW+LA+
Sbjct: 541 ECVRIFIGHRSMILSLAMSPDGRYMASADEDGTIMMWDLSSGRCISPLIGHNSCVWSLAF 600

Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSG-TNRLRSLKTLPTKSTPVYSLQFS 655
           SCEGSLLASGSADCTVKLWDVTTSTK  +TEE KSG TNRLR LKTLPTKSTPVY+L+FS
Sbjct: 601 SCEGSLLASGSADCTVKLWDVTTSTKAPRTEESKSGNTNRLRLLKTLPTKSTPVYTLRFS 660

Query: 656 RRNLLFAAGALSKT 669
           RRNLLFAAGAL+K+
Sbjct: 661 RRNLLFAAGALAKS 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514986|ref|XP_003526182.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Glycine max]

 Score = 1085 bits (2805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/671 (78%), Positives = 587/671 (87%), Gaps = 11/671 (1%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           M++ ++V +V  +LKKKGF++ E   Q E Q NKS N +N +    +P+++     FS+ 
Sbjct: 1   MEDEKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKS-NTSNSV---LEPDIANHLLAFSQL 56

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E GPAR+ D YS+LR+WTYSSLDLYKHELL VLYPVFIHCFMDLVAKGH+QEAR FFN F
Sbjct: 57  ETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTF 116

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHEMMHLRDLQKLEGVLSP+HL+EMEFAHSLR SK NIKIC+YSYELLLQ+LH TQST
Sbjct: 117 REDHEMMHLRDLQKLEGVLSPNHLKEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQST 176

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            +LGIINE INFQV+PGQPS ISDD E VTL GS+Q+AANQINQKE+HWGLLEDSLE RL
Sbjct: 177 TILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERL 236

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EK G L+SDSEK EGE KE E DE KKR +EGGKQGAS+KK+KKDK  +AT K+++ EAN
Sbjct: 237 EKAGALLSDSEKGEGEAKEGENDETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEAN 296

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           T+ +APRVKP+L LPV+P E EQS+LEDLRNRV LSS ALPSVSFYTFINTHNGL+C+SI
Sbjct: 297 TIPSAPRVKPELPLPVIPAEAEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSI 356

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DGSL+AGGFSDSSLKVWDMAKLGQQ  SS  QGEN     E I G  G KR YTL+QG
Sbjct: 357 SHDGSLIAGGFSDSSLKVWDMAKLGQQQTSSLSQGEN-----EQIFGQGGGKRQYTLFQG 411

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPVY+ASFSP+GDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYFA
Sbjct: 412 HSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA 471

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGEC
Sbjct: 472 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGEC 531

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
           VR+F+GHR MILSLAMSPDGRYMASGDEDGTIMMWDL+SGRC+TPL+GHTSCVW+LA+S 
Sbjct: 532 VRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSS 591

Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT-NRLRSLKTLPTKSTPVYSLQFSRRN 658
           EGS++ASGSADCTVKLWDV TSTKV + EEK G+ NRLRSLKTLPTKSTPVYSL+FSRRN
Sbjct: 592 EGSVIASGSADCTVKLWDVNTSTKVSRAEEKGGSANRLRSLKTLPTKSTPVYSLRFSRRN 651

Query: 659 LLFAAGALSKT 669
           LLFAAGALSK+
Sbjct: 652 LLFAAGALSKS 662

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507277|ref|XP_003522395.1| PREDICTED: transcription initiation factor TFIID subunit 5-like [Glycine max]

 Score = 1079 bits (2791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/673 (78%), Positives = 588/673 (87%), Gaps = 9/673 (1%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           M++ ++V +V  +LKKKGF++ E   Q E Q NKS    N  + L +P+++     FS+ 
Sbjct: 1   MEDDKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKS----NTSNSLLEPDIANHLLAFSQL 56

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E GPAR+ D YS+LR+WTYSSLDLYKHELL VLYPVFIHCFMDLVAKGH+QEAR FFN F
Sbjct: 57  ETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTF 116

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           REDHEMMHLRDLQKLEGVLSP+HLEEMEFAHSLR SK NIKIC+YSYELLLQ+LH TQST
Sbjct: 117 REDHEMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQST 176

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            +LGIINE INFQV+PGQPS ISDD E VTL GS+Q+AAN INQKE+HWGLLEDSLE RL
Sbjct: 177 TILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANLINQKEIHWGLLEDSLEERL 236

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQG-ASIKKLKKDKAINATAKTSRLEA 298
           EK G L+ DSEK EGE KE E DE KKR +EGGKQG AS+KK+KKDK  +AT K+++ EA
Sbjct: 237 EKAGALLLDSEKGEGEAKEGENDETKKRSIEGGKQGGASVKKVKKDKGGSATGKSAKPEA 296

Query: 299 NTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCAS 358
           +TV  APRVKP+L LPV+PTEVEQS+LEDLRNRV LSS ALPSVSFYTFINTHNGL+C+S
Sbjct: 297 STVPAAPRVKPELPLPVIPTEVEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSS 356

Query: 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418
           IS DGSL+AGGFSDSSLKVWDMAKLGQQA SS  QGENDT+  E I G  G KR YTL+Q
Sbjct: 357 ISHDGSLIAGGFSDSSLKVWDMAKLGQQA-SSLSQGENDTSQNEQIFGQGGGKRQYTLFQ 415

Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GHSGPVY+ASFSP+GDFILSSSAD+TIRLWSTKLNANLVCYKGHNYPVWDVQF+P GHYF
Sbjct: 416 GHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYF 475

Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538
           ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGE
Sbjct: 476 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGE 535

Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYS 598
           CVR+F+GHR MILSLAMSPDGRYMASGDEDGTIMMWDL+SGRC+TPL+GHTSCVW+LA+S
Sbjct: 536 CVRVFVGHRVMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFS 595

Query: 599 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT--NRLRSLKTLPTKSTPVYSLQFSR 656
            EGS++ASGSADCTVKLWDV  STKV + EEKSG+  +RLRSLKTL TKSTPVYSL+FSR
Sbjct: 596 SEGSIIASGSADCTVKLWDVNASTKVSRAEEKSGSANSRLRSLKTLSTKSTPVYSLRFSR 655

Query: 657 RNLLFAAGALSKT 669
           RNLLFAAGALSK+
Sbjct: 656 RNLLFAAGALSKS 668

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466033|ref|XP_003603301.1| Transcription initiation factor TFIID subunit [Medicago truncatula] gi|355492349|gb|AES73552.1| Transcription initiation factor TFIID subunit [Medicago truncatula]

 Score = 1065 bits (2754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/718 (71%), Positives = 586/718 (81%), Gaps = 51/718 (7%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MDE +++ +V  YLKKKGF + E   Q E Q+NK+S+++N I    +P+++     FS+ 
Sbjct: 1   MDEDEILGYVTAYLKKKGFKQTEKVFQEEFQQNKTSSSSNSI---LEPDIANHLHAFSQL 57

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           E+GPARY + YS+LR+WTYSSLDLYKHELL VLYPVFIHCFMDLVAKGHIQEAR FF  F
Sbjct: 58  ENGPARYHNGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFTTF 117

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSY------------- 167
           REDHE+MHLRD+QKLEGVLSP+HL+EMEFAHSLR SK NIKIC+++              
Sbjct: 118 REDHELMHLRDIQKLEGVLSPTHLKEMEFAHSLRQSKFNIKICEHAVVVKSLFAKSYVLG 177

Query: 168 ----ELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQIN 223
               +LLLQ+LH TQST +LGIINE INFQV+ GQPS ISDD E VTL GS+Q+AANQ N
Sbjct: 178 STLAKLLLQHLHSTQSTTILGIINEHINFQVTSGQPSLISDDPEAVTLTGSSQEAANQTN 237

Query: 224 QKEVHWGLLEDSLENRLEKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLK 282
           QKE+HWGLLEDSLE RLEK G L+SDSEK +GE KE E DENKKR +E GKQGAS KK+K
Sbjct: 238 QKEIHWGLLEDSLEERLEKPGALLSDSEKGDGEAKEGENDENKKRSIEVGKQGASSKKMK 297

Query: 283 KDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSV 342
           KD+   AT K+++ E  TVS APRVK +L LP++PTEVE SILEDLRNRV LSS ALPSV
Sbjct: 298 KDRGGTATGKSAKPEVTTVSAAPRVKAELPLPIIPTEVEHSILEDLRNRVQLSSVALPSV 357

Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           SFYTFINTHNGL+C+SIS DGSLVAGGFSDSSLKVWDMAKLGQQ  SS  QGENDT+  E
Sbjct: 358 SFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPSSSLSQGENDTSQNE 417

Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
            ++G +G KR YTL+QGHSGPVY+ASF P+GDFILSSSAD+TIRLWSTKLNANLVCYKGH
Sbjct: 418 QMLGKSGGKRQYTLFQGHSGPVYAASFCPVGDFILSSSADSTIRLWSTKLNANLVCYKGH 477

Query: 463 NYPVWDVQ-----------------------------FNPQGHYFASSSHDRTARIWSMD 493
           NYPVWDVQ                             F+P GHYFASSSHDRTAR+WSMD
Sbjct: 478 NYPVWDVQPRESTSVNGKILYAHIFWKVVFISFSWMQFSPMGHYFASSSHDRTARVWSMD 537

Query: 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553
           RIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV SGECVR+F+GHR MILSL
Sbjct: 538 RIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSL 597

Query: 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV 613
           +MSPDGRYMASGDEDGTIMMWDL+SGRCVTPL+GHTSCVW+LA+S EGS+LASGSADCTV
Sbjct: 598 SMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAFSSEGSILASGSADCTV 657

Query: 614 KLWDVTTSTKVLKTEEKSG-TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS 670
           KLWDV TSTKV +TEEK+G  NRLRSLKTLPTKSTPV +L+FSRRNLLFAAGAL+K +
Sbjct: 658 KLWDVNTSTKVSRTEEKNGNANRLRSLKTLPTKSTPVNTLRFSRRNLLFAAGALAKNA 715

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79520288|ref|NP_197897.3| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] gi|39545918|gb|AAR28022.1| TAF5 [Arabidopsis thaliana] gi|332006023|gb|AED93406.1| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana]

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/670 (77%), Positives = 583/670 (87%), Gaps = 6/670 (0%)

Query: 1   MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
           MD  Q+ EFV  YLKKKGFS A   L++   +N + ++   +D  NDPEL+K  R+FS+ 
Sbjct: 1   MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQ 60

Query: 61  EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
           ED P RY++ YSKLRSW Y+SLDLYKHELL V+YPVFIHC+MDLV KGH QEAR FFN+F
Sbjct: 61  EDDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSF 120

Query: 121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
           R+DHEM+HLRDLQKLEGVLSPSHLEEMEFA SLR SKVNIK CQYSYELLLQYLH T ST
Sbjct: 121 RKDHEMVHLRDLQKLEGVLSPSHLEEMEFARSLRKSKVNIKFCQYSYELLLQYLHSTVST 180

Query: 181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
            MLGIINE INFQV  GQP+S SDD E VT++GS QD AN INQKE+ WGLLEDSLE+RL
Sbjct: 181 LMLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRL 240

Query: 241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
           EKTG L+SDSEK +GE+K+ + D++KKR  E GKQG+S+KKLKKDKA NATAK +RLE  
Sbjct: 241 EKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKAGNATAKVARLETI 300

Query: 300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
           TVS APRVKP+LALPVM T+VEQSILEDLRNRV LSS A+PSVSFYTF+NTHNGLNC+SI
Sbjct: 301 TVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSI 360

Query: 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
           S DGSLVAGGFSDSS+KVWDMAK+GQ A S  LQ END++ +   IGPNGR RSYTL  G
Sbjct: 361 SHDGSLVAGGFSDSSIKVWDMAKIGQ-AGSGALQAENDSSDQS--IGPNGR-RSYTLLLG 416

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
           HSGPVYSA+FSP GDF+LSSSADTTIRLWSTKLNANLVCYKGHNYPVWD QF+P GHYFA
Sbjct: 417 HSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFA 476

Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV +GEC
Sbjct: 477 SCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGEC 536

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
           VRIFIGHRSM+LSLAMSPDGRYMASGDEDGTIMMWDL++ RC+TPLMGH SCVW+L+YS 
Sbjct: 537 VRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSG 596

Query: 600 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-TNRLRSLKTLPTKSTPVYSLQFSRRN 658
           EGSLLASGSADCTVKLWDVT+STK+ K EEK+G +NRLRSL+T PTKSTPV++L+FSRRN
Sbjct: 597 EGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRN 656

Query: 659 LLFAAGALSK 668
           LLFAAGA+SK
Sbjct: 657 LLFAAGAISK 666

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	670
TAIR|locus:2179300	669	TAF5 "AT5G25150" [Arabidopsis	0.991	0.992	0.774	2.7e-283
UNIPROTKB|E1BEN8	800	TAF5 "Uncharacterized protein"	0.6	0.502	0.446	8.2e-120
UNIPROTKB|E2RE41	801	TAF5 "Uncharacterized protein"	0.6	0.501	0.448	1.3e-119
MGI|MGI:2442144	801	Taf5 "TAF5 RNA polymerase II,	0.6	0.501	0.448	2.2e-119
RGD|1311332	798	Taf5 "TAF5 RNA polymerase II,	0.6	0.503	0.448	2.8e-119
UNIPROTKB|Q15542	800	TAF5 "Transcription initiation	0.6	0.502	0.448	4.5e-119
UNIPROTKB|E1C4U3	780	E1C4U3 "Uncharacterized protei	0.880	0.756	0.387	1.2e-111
ZFIN|ZDB-GENE-051120-180	756	taf5 "TAF5 RNA polymerase II,	0.877	0.777	0.388	2.9e-110
CGD|CAL0000165	798	orf19.536 [Candida albicans (t	0.540	0.453	0.428	6.3e-110
POMBASE|SPCC5E4.03c	643	taf5 "SAGA complex subunit/TAT	0.423	0.441	0.466	9.8e-97

TAIR|locus:2179300 TAF5 "AT5G25150" [Arabidopsis thaliana (taxid:3702)]

 Score = 2722 (963.3 bits), Expect = 2.7e-283, P = 2.7e-283
 Identities = 519/670 (77%), Positives = 583/670 (87%)

Query:     1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSES 60
             MD  Q+ EFV  YLKKKGFS A   L++   +N + ++   +D  NDPEL+K  R+FS+ 
Sbjct:     1 MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQ 60

Query:    61 EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNF 120
             ED P RY++ YSKLRSW Y+SLDLYKHELL V+YPVFIHC+MDLV KGH QEAR FFN+F
Sbjct:    61 EDDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSF 120

Query:   121 REDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST 180
             R+DHEM+HLRDLQKLEGVLSPSHLEEMEFA SLR SKVNIK CQYSYELLLQYLH T ST
Sbjct:   121 RKDHEMVHLRDLQKLEGVLSPSHLEEMEFARSLRKSKVNIKFCQYSYELLLQYLHSTVST 180

Query:   181 KMLGIINERINFQVSPGQPSSISDDAEIVTLIGSNQDAANQINQKEVHWGLLEDSLENRL 240
              MLGIINE INFQV  GQP+S SDD E VT++GS QD AN INQKE+ WGLLEDSLE+RL
Sbjct:   181 LMLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRL 240

Query:   241 EKTG-LISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEAN 299
             EKTG L+SDSEK +GE+K+ + D++KKR  E GKQG+S+KKLKKDKA NATAK +RLE  
Sbjct:   241 EKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKAGNATAKVARLETI 300

Query:   300 TVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359
             TVS APRVKP+LALPVM T+VEQSILEDLRNRV LSS A+PSVSFYTF+NTHNGLNC+SI
Sbjct:   301 TVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSI 360

Query:   360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419
             S DGSLVAGGFSDSS+KVWDMAK+GQ A S  LQ END++ +   IGPNGR RSYTL  G
Sbjct:   361 SHDGSLVAGGFSDSSIKVWDMAKIGQ-AGSGALQAENDSSDQS--IGPNGR-RSYTLLLG 416

Query:   420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479
             HSGPVYSA+FSP GDF+LSSSADTTIRLWSTKLNANLVCYKGHNYPVWD QF+P GHYFA
Sbjct:   417 HSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFA 476

Query:   480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
             S SHDRTARIWSMDRIQPLRIMAGHLSDVDCV+WH NCNYIATGSSDKTVRLWDV +GEC
Sbjct:   477 SCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGEC 536

Query:   540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
             VRIFIGHRSM+LSLAMSPDGRYMASGDEDGTIMMWDL++ RC+TPLMGH SCVW+L+YS 
Sbjct:   537 VRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSG 596

Query:   600 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-TNRLRSLKTLPTKSTPVYSLQFSRRN 658
             EGSLLASGSADCTVKLWDVT+STK+ K EEK+G +NRLRSL+T PTKSTPV++L+FSRRN
Sbjct:   597 EGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRN 656

Query:   659 LLFAAGALSK 668
             LLFAAGA+SK
Sbjct:   657 LLFAAGAISK 666

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

UNIPROTKB|E1BEN8 TAF5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 881 (315.2 bits), Expect = 8.2e-120, Sum P(3) = 8.2e-120
 Identities = 192/430 (44%), Positives = 258/430 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   378 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 429

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   430 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 489

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   490 ADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 548

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   549 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 608

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   609 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 668

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   669 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 728

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQFSRR 657
             GS D TV+LWD   + + ++T++  + T  +          L T  TKSTPV  L F+RR
Sbjct:   729 GSMDNTVRLWDAVKAFEDVETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRR 788

Query:   658 NLLFAAGALS 667
             NL+ AAGA S
Sbjct:   789 NLVLAAGAYS 798

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E2RE41 TAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 884 (316.2 bits), Expect = 1.3e-119, Sum P(3) = 1.3e-119
 Identities = 193/430 (44%), Positives = 258/430 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   379 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 430

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   431 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 490

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   491 ADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 549

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   550 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 609

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   610 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 669

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   670 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 729

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQFSRR 657
             GS D TV+LWD   + + L+T++  + T  +          L T  TKSTPV  L F+RR
Sbjct:   730 GSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRR 789

Query:   658 NLLFAAGALS 667
             NL+ AAGA S
Sbjct:   790 NLVLAAGAYS 799

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:2442144 Taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)]

 Score = 883 (315.9 bits), Expect = 2.2e-119, Sum P(3) = 2.2e-119
 Identities = 193/430 (44%), Positives = 258/430 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   379 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 430

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   431 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 490

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   491 ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 549

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   550 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 609

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   610 ARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 669

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   670 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 729

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQFSRR 657
             GS D TV+LWD   + + L+T++  + T  +          L T  TKSTPV  L F+RR
Sbjct:   730 GSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRR 789

Query:   658 NLLFAAGALS 667
             NL+ AAGA S
Sbjct:   790 NLVLAAGAYS 799

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005669 "transcription factor TFIID complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=ISO

RGD|1311332 Taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)]

 Score = 881 (315.2 bits), Expect = 2.8e-119, Sum P(3) = 2.8e-119
 Identities = 193/430 (44%), Positives = 258/430 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   376 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 427

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   428 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 487

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   488 ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 546

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   547 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 606

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   607 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 666

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   667 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 726

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQFSRR 657
             GS D TV+LWD   + + L+T++  + T  +          L T  TKSTPV  L F+RR
Sbjct:   727 GSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRR 786

Query:   658 NLLFAAGALS 667
             NL+ AAGA S
Sbjct:   787 NLVLAAGAYS 796

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0004402 "histone acetyltransferase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISO

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0046983 "protein dimerization activity" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q15542 TAF5 "Transcription initiation factor TFIID subunit 5" [Homo sapiens (taxid:9606)]

 Score = 881 (315.2 bits), Expect = 4.5e-119, Sum P(3) = 4.5e-119
 Identities = 193/430 (44%), Positives = 258/430 (60%)

Query:   257 KEAEIDENKKRPVEGGKQGASIKKLKKDKAINATAKTSRLEANTVSTAPRVKPDLALPVM 316
             KE EI+       E G+      K KK K  +  +K+ + + N    AP   P   +P +
Sbjct:   378 KEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN----AP---PQNRIP-L 429

Query:   317 PTEVEQSILEDLRN------RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGF 370
             P   +   L+ + N      RV L    LPS+ FYTF+N + GL    ++ D SL+AGGF
Sbjct:   430 PELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF 489

Query:   371 SDSSLKVWDMA--KLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             +DS+++VW +   KL   +QA    L  +      E I+          LY GHSGPVY 
Sbjct:   490 ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY-GHSGPVYG 548

Query:   427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
             ASFSP  +++LSSS D T+RLWS +    LV YKGHNYPVWD QF+P G+YF S  HDR 
Sbjct:   549 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV 608

Query:   487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
             AR+W+ D  QPLRI AGHL+DV+C R+H N NY+ATGS+D+TVRLWDV +G CVRIF GH
Sbjct:   609 ARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGH 668

Query:   547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606
             +  I SL  SP+GR++A+G  DG +++WD+  G  V  L GHT  V +L +S +G +LAS
Sbjct:   669 KGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILAS 728

Query:   607 GSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS--------LKTLPTKSTPVYSLQFSRR 657
             GS D TV+LWD   + + L+T++  + T  +          L T  TKSTPV  L F+RR
Sbjct:   729 GSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRR 788

Query:   658 NLLFAAGALS 667
             NL+ AAGA S
Sbjct:   789 NLVLAAGAYS 798

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA;TAS

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=IDA

GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA

GO:0016568 "chromatin modification" evidence=IC

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

UNIPROTKB|E1C4U3 E1C4U3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
 Identities = 247/637 (38%), Positives = 364/637 (57%)

Query:    46 NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLV 105
             + P++S     +++  D P  Y++ YS L+++   SLD ++ EL  + YP+F+H +++LV
Sbjct:   174 DQPDVSAVLSAYNQQGD-PTLYEEYYSGLKNFIECSLDCHRAELSQLFYPLFVHMYLELV 232

Query:   106 AKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQY 165
                H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + 
Sbjct:   233 YNQHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRD 292

Query:   166 SYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQ 224
             SY+LL ++L + Q+ ++  I+ E +   +  G P S    DA + +L G   +A  + N+
Sbjct:   293 SYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAG---EAKREANK 349

Query:   225 KEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKD 284
              +V +GLL++       +  +  D E  EGEN+E +    KK+  +    G+  KK  +D
Sbjct:   350 AKVFFGLLKEP------EFDVPLDDEDEEGENEEGK---PKKKKAKRDSVGSKSKK--QD 398

Query:   285 KAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSF 344
                NA  +      N +   P +K    L  +        +++   RV L    LPS+ F
Sbjct:   399 P--NAPPQ------NRIPL-PELKDSDKLDKVMN------MKEAARRVRLGPECLPSICF 443

Query:   345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG-----LQGENDTT 399
             YTF+N + GL    I+ D S++ GGF+DS+++VW +     ++V +      +  E+D  
Sbjct:   444 YTFLNAYQGLTAVDITDDSSMIVGGFADSTVRVWSVTPKKLRSVKAAADLSLIDKESDDV 503

Query:   400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY 459
               E I+          LY GHSGPVY  SFSP  +++LS S D T+RLWS +    LV Y
Sbjct:   504 -LERIMDEKTASELKILY-GHSGPVYGTSFSPDRNYLLSCSEDGTVRLWSLQTFTCLVGY 561

Query:   460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
             KGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV C R+H N NY
Sbjct:   562 KGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNY 621

Query:   520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
             IATGS+D+TVRLWDV +G CVRIF GH+  I SLA SP+GR++A+G  DG +++WD+  G
Sbjct:   622 IATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGRFLATGATDGRVLLWDIGHG 681

Query:   580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS 638
               V  L GHT  ++ L +S +G +LASGS D TV+LWD   + + L+T++  + T  +  
Sbjct:   682 LMVGELKGHTDTIYALRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINL 741

Query:   639 --------LKTLPTKSTPVYSLQFSRRNLLFAAGALS 667
                     L T  TKSTPV  L F+RRNLL AAGA S
Sbjct:   742 PENSQDLLLGTYMTKSTPVVHLHFTRRNLLLAAGAYS 778

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-051120-180 taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]

 Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
 Identities = 247/635 (38%), Positives = 364/635 (57%)

Query:    46 NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLV 105
             + P++S     +S+  D P+ Y+  YS L+ +  S LD ++ EL  + YP+F+H +++LV
Sbjct:   150 DQPDVSVVLSAYSQQGD-PSLYKVYYSDLKKFIESVLDCHRAELSQLFYPLFVHMYLELV 208

Query:   106 AKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQY 165
                H  EA+ FF+ F  D E  +  DL+ L G+    H++  E     R S+  ++I + 
Sbjct:   209 YNNHESEAKAFFDKFSGDQECYYEDDLRVLCGLTKKEHMKGNEALLDFRTSRFVLRISRD 268

Query:   166 SYELLLQYLHKTQSTKMLGIINERINFQVSPGQPSSISD-DAEIVTLIGSNQDAANQINQ 224
             SY+LL ++L + Q+ ++  II E +   +  G P S S  D+   +L G   +A  ++N+
Sbjct:   269 SYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAG---EARREVNK 325

Query:   225 KEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLKKD 284
              +V +GLL+   E  +E   +  D E  E EN+E +    KK+  +    G+  KK  +D
Sbjct:   326 VKVFYGLLK---EPEIE---VPLDDEDEEAENEEGK---PKKKKTKKDSMGSKSKK--QD 374

Query:   285 KAINATAKTSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSF 344
                NA       + N +   P +K    L  +        +++   R+ L    LPS+ F
Sbjct:   375 P--NAP------QQNRIPL-PELKDSDKLDKI------MYMKESTKRIRLGPETLPSICF 419

Query:   345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG-----LQGENDTT 399
             YTF+N + GL     + D SL+AGGF+DS+++VW +     + V S      +  E+D  
Sbjct:   420 YTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDV 479

Query:   400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY 459
               E I+       S  L+ GHSGPVY  SFSP  +++LSSS D TIRLWS +    LV Y
Sbjct:   480 -LERIMDEKTSSESKILH-GHSGPVYGVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGY 537

Query:   460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
             KGHNYPVWD QF+P G+YF S  HDR AR+W+ D  QPLRI AGHL+DV C R+H N NY
Sbjct:   538 KGHNYPVWDTQFSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNY 597

Query:   520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
             +ATGSSD+TVRLWDV +G CVRIF GH+  I SLA SP+G+++ASG  DG +++WD+  G
Sbjct:   598 VATGSSDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWDIGHG 657

Query:   580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-KSGTNRLRS 638
               +  L GHT  ++ L +S +G ++ASGS D TV+LWDV  +   ++T++  + T  +  
Sbjct:   658 LMIAELKGHTGTIYALKFSRDGEIIASGSIDNTVRLWDVMRAIDDVETDDFTAATGHIHL 717

Query:   639 --------LKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                     L T  +KST V  L F+RRNLL AAG+
Sbjct:   718 PDNSQELLLGTYHSKSTAVIHLHFTRRNLLLAAGS 752

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

CGD|CAL0000165 orf19.536 [Candida albicans (taxid:5476)]

 Score = 789 (282.8 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
 Identities = 166/387 (42%), Positives = 241/387 (62%)

Query:   266 KRPVEG--GKQGASIKKLKKDKAINATAKTSRLEANTVSTAPR---VKPDLALPVMPT-E 319
             K P++    K+  +  K+K +K      KT   E   ++   +   V+  L LP+    +
Sbjct:   366 KLPIDPDVAKEVEAELKIKDEKIEPVNNKTLTKEFQDMTKPDQDSPVRESLPLPLKDAND 425

Query:   320 VEQSIL--EDLRNRVHLSS--AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSL 375
             +++ I+  ED R+++ L +  A+LPSV  YTF NT+N + C   + D +LVA GF DS +
Sbjct:   426 IKKMIIQVEDSRSKIKLGAIQASLPSVCMYTFHNTNNNMTCIEFNDDSTLVAAGFQDSYI 485

Query:   376 KVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435
             K+W    L  + + S L+ +    P+E     N RK       GHSGPVY  SFSP   +
Sbjct:   486 KLWS---LDGKPLKSVLKRDRHK-PQE-----NTRKLI-----GHSGPVYGVSFSPDNKY 531

Query:   436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495
             +LS S D T+RLWS      LV YKGH  PVWDV+F+P GHYF ++SHD+TAR+W+ D I
Sbjct:   532 LLSCSEDKTVRLWSLDTYTALVSYKGHTQPVWDVKFSPLGHYFVTASHDQTARLWATDHI 591

Query:   496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555
              PLRI AGH++DVDCV +H N NY+ TGSSDKT R+WDV +G CVR+F+GH + +  LA+
Sbjct:   592 YPLRIFAGHINDVDCVEFHPNSNYVFTGSSDKTCRMWDVHTGNCVRVFLGHTNSVNCLAV 651

Query:   556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVK 614
             SPDGR++ASG EDG I +WD+ SGR +  + GH  + +++LA+S +G++L SG AD +V+
Sbjct:   652 SPDGRWLASGGEDGIICVWDIGSGRRLKSMRGHARASLYSLAFSRDGTVLVSGCADNSVR 711

Query:   615 LWDVTTSTKVLKTEEKSGTNRLRSLKT 641
             +WDV  +T     E ++  N +   +T
Sbjct:   712 VWDVKKNTNDAGPEPEAFNNNVNGNET 738

GO:0000124 "SAGA complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046695 "SLIK (SAGA-like) complex" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

POMBASE|SPCC5E4.03c taf5 "SAGA complex subunit/TATA-binding protein associated factor/transcription factor TFIID complex subunit Taf5" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 717 (257.5 bits), Expect = 9.8e-97, Sum P(2) = 9.8e-97
 Identities = 141/302 (46%), Positives = 195/302 (64%)

Query:   318 TEVEQSILEDLRNRVHLSS-AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLK 376
             +EVE   ++D   R+HL   A+LPSV  YTF +T+N +NCA  S D +++A GF +S ++
Sbjct:   292 SEVEA--VKDWSKRLHLGPRASLPSVCMYTFHHTNNNMNCAEFSPDSTMIACGFQESYIR 349

Query:   377 VWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436
             +W + K  ++++         +T  ED  G      S  L   HSGPVY  +FSP   ++
Sbjct:   350 LWSI-KADKKSLPK-------STSVEDSDG------SVRLLS-HSGPVYGTTFSPDNKYL 394

Query:   437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496
             LS S D + RLWS      LV YKGH  PVWDV F P GHYFA++SHD+TA++WS D I 
Sbjct:   395 LSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSCDHIY 454

Query:   497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
             PLR+ AGHLSDVDCV +H N  Y+ TGSSDKT RLWDV  G  VR+F GH   + ++A++
Sbjct:   455 PLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIA 514

Query:   557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
             PDG  MAS D +G I +WD+ +GR +  + GH   +++L++S E ++L SG +DCTV+ W
Sbjct:   515 PDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAW 574

Query:   617 DV 618
             DV
Sbjct:   575 DV 576

GO:0000124 "SAGA complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IC

GO:0016573 "histone acetylation" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P38129	TAF5_YEAST	No assigned EC number	0.3240	0.9537	0.8007	yes	no
O13282	TAF5_SCHPO	No assigned EC number	0.3386	0.8776	0.9144	yes	no
P49846	TAF5_DROME	No assigned EC number	0.3380	0.8746	0.8323	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032691001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (676 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024845001	RecName- Full=TATA-box-binding protein; (211 aa)				•	•	•	•		0.903
	GSVIVG00034077001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (177 aa)					•	•	•		0.848
	GSVIVG00015071001	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (106 aa)					•	•	•		0.749
	GSVIVG00014940001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (712 aa)					•	•	•		0.747
	GSVIVG00025841001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (515 aa)					•	•	•		0.738
	GSVIVG00027245001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (523 aa)					•	•	•		0.738
	GSVIVG00032894001	SubName- Full=Chromosome undetermined scaffold_62, whole genome shotgun sequence; (136 aa)					•	•	•		0.662
	GSVIVG00032897001	SubName- Full=Chromosome undetermined scaffold_62, whole genome shotgun sequence; (136 aa)					•	•	•		0.645
	GSVIVG00021654001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (351 aa)					•	•	•		0.640
	GSVIVG00018562001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (1798 aa)					•	•			0.597

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	670
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-69
pfam04494	141	pfam04494, TFIID_90kDa, WD40 associated region in	3e-56
cd08044	133	cd08044, TAF5_NTD2, TAF5_NTD2 is the second conser	4e-49
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-40
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-38
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-37
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-30
smart00320	40	smart00320, WD40, WD40 repeats	5e-10
smart00320	40	smart00320, WD40, WD40 repeats	3e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-09
smart00320	40	smart00320, WD40, WD40 repeats	3e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-08
smart00320	40	smart00320, WD40, WD40 repeats	7e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	5e-07
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	6e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	7e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	5e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  227 bits (582), Expect = 1e-69
 Identities = 102/323 (31%), Positives = 160/323 (49%), Gaps = 44/323 (13%)

Query: 348 INTHNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406
           +  H G + C + S DG L+A G  D ++KVWD+                          
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-------------------- 44

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
                      +GH+GPV   + S  G ++ S S+D TIRLW  +    +    GH   V
Sbjct: 45  --------RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV 96

Query: 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
             V F+P G   +SSS D+T ++W ++  + L  + GH   V+ V +  +  ++A+ S D
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156

Query: 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
            T++LWD+ +G+CV    GH   + S+A SPDG  + S   DGTI +WDL++G+C+  L 
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Query: 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646
           GH + V ++A+S +G LLASGS D T+++WD+ T                  ++TL   +
Sbjct: 217 GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT---------------GECVQTLSGHT 261

Query: 647 TPVYSLQFSRRNLLFAAGALSKT 669
             V SL +S      A+G+   T
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGT 284

Length = 289

>gnl|CDD|203028 pfam04494, TFIID_90kDa, WD40 associated region in TFIID subunit

 Score =  187 bits (476), Expect = 3e-56
 Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 3/137 (2%)

Query: 58  SESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFF 117
           S  E  P +Y+  YS LR+W   SLD+YK EL  +LYP+F+H ++DLVAKGH  EAR+FF
Sbjct: 5   SPEESDPEQYERAYSLLRNWIEDSLDIYKPELSRLLYPLFVHSYLDLVAKGHPSEARSFF 64

Query: 118 NNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKT 177
           + F  D E +H  D++KL  +  P HL+E E A + R +K  I++ + S+ LLL++L + 
Sbjct: 65  DKFHGDFEQLHGEDIEKLRSISLPEHLKENELARAFRDNKYRIRLSRDSFSLLLRFLQEN 124

Query: 178 QST---KMLGIINERIN 191
           ++T    +L I+N+ + 
Sbjct: 125 ENTGGSLLLRILNQHLQ 141

This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown. Length = 141

>gnl|CDD|176269 cd08044, TAF5_NTD2, TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

 Score =  167 bits (426), Expect = 4e-49
 Identities = 58/133 (43%), Positives = 86/133 (64%)

Query: 64  PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED 123
           P  Y+  YSKLR W  SSLD+YK+EL  +LYP+F+H ++DLVA GH++EA++FF  F  D
Sbjct: 1   PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGD 60

Query: 124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKML 183
            E  H  D++KL  + +P HL+E E A   R +K  I++ + +Y LLL++L     + +L
Sbjct: 61  FEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLL 120

Query: 184 GIINERINFQVSP 196
            I+NE I+  V  
Sbjct: 121 KILNEHIDIDVRD 133

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. TAF5 has a paralog gene (TAF5L) which has a redundant function. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. C-terminus of TAF5 contains six WD40 repeats that likely form a closed beta propeller structure and may be involved in protein-protein interaction. The first part of the TAF5 N-terminal (TAF5_NTD1) homodimerizes in the absence of other TAFs. The second conserved N-terminal part of TAF5 (TAF5_NTD2) has an alpha-helical domain. One study has shown that TAF5_NTD2 homodimerizes only at high concentration of calcium but not any other metals. No dimerization was observed in other structural studies of TAF_NTD2. Several TAFs interact via histone-fold (HFD) motifs; HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamer. However, TAF5 does not have a HFD motif. Length = 133

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  154 bits (388), Expect = 2e-40
 Identities = 98/292 (33%), Positives = 155/292 (53%), Gaps = 34/292 (11%)

Query: 345 YTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
            T     + ++  + S DG  L+A G SD ++++WD++                      
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST--------------------- 230

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGH 462
                  K   +   GHS  V S SFSP G  + S S+D TIRLW  + +++L+    GH
Sbjct: 231 ------GKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINCNYI 520
           +  V  V F+P G   AS S D T R+W ++  ++     + GH   V  + +  + + +
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343

Query: 521 ATG-SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
            +G S D T+RLWD+ +G+ ++   GH S +LS++ SPDGR ++SG  DGT+ +WDL++G
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402

Query: 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS 631
             +  L GHTS V +L +S +G  LASGS+D T++LWD+ TS K +      
Sbjct: 403 SLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  146 bits (369), Expect = 8e-38
 Identities = 108/328 (32%), Positives = 158/328 (48%), Gaps = 35/328 (10%)

Query: 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397
           +LP +S        + +   + S DG L+  G SD ++K+WD+                 
Sbjct: 52  SLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDL----------------- 94

Query: 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-SPLGDFILS--SSADTTIRLWSTKLNA 454
                     NG K   +L   H   V   +  SP G+ IL   SS D T++LW      
Sbjct: 95  ---------DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145

Query: 455 NLV-CYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
            L+   +GH+  V  + F+P G   AS S  D T ++W +   +PL  +AGH   V  + 
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205

Query: 513 WHINCN-YIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGT 570
           +  +    IA+GSSD T+RLWD+S+G+ +R    GH   ++S + SPDG  +ASG  DGT
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGT 264

Query: 571 IMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629
           I +WDL S    +  L GH+S V ++A+S +G LLASGS+D TV+LWD+ T   +     
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324

Query: 630 KSGTNRLRSLKTLPTKSTPVYSLQFSRR 657
           K     + SL   P  S  V        
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGT 352

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  139 bits (351), Expect = 9e-37
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 29/187 (15%)

Query: 348 INTHNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406
           +  H   +N  + S DG+ VA    D ++K+WD+                          
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG----------------------- 167

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
                +      GH+G V S +FSP G+ +LSSS+D TI+LW       L   +GH   V
Sbjct: 168 -----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV 222

Query: 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
             V F+P G+  AS S D T R+W +   + ++ ++GH + V  + W  +   +A+GS+D
Sbjct: 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282

Query: 527 KTVRLWD 533
            T+R+WD
Sbjct: 283 GTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  130 bits (330), Expect = 6e-34
 Identities = 63/173 (36%), Positives = 91/173 (52%), Gaps = 15/173 (8%)

Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
             R + GH   V CV +  +   +ATGS D T+++WD+ +GE +R   GH   +  +A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
            DG Y+ASG  D TI +WDL +G CV  L GHTS V ++A+S +G +L+S S D T+K+W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 617 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
           DV T   +                TL   +  V S+ FS      A+ +   T
Sbjct: 121 DVETGKCL---------------TTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  125 bits (315), Expect = 8e-31
 Identities = 81/242 (33%), Positives = 119/242 (49%), Gaps = 31/242 (12%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
             + ++ H+    +S S DGSL+A G SD ++++WD+                       
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS------------------ 275

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKG 461
                          GHS  V S +FSP G  + S S+D T+RLW  +    L     KG
Sbjct: 276 ---------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326

Query: 462 HNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
           H  PV  + F+P G    S  S D T R+W +   +PL+ + GH S+V  V +  +   +
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVV 385

Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
           ++GS+D TVRLWD+S+G  +R   GH S + SL  SPDG+ +ASG  D TI +WDL +  
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL 445

Query: 581 CV 582
             
Sbjct: 446 KS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  124 bits (312), Expect = 2e-30
 Identities = 92/274 (33%), Positives = 144/274 (52%), Gaps = 24/274 (8%)

Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGH 462
              +    S  L +GH   + S +FSP G+ +LS S+D TI+LW       L+      H
Sbjct: 49  SLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH 108

Query: 463 NYPVWDVQF-NPQGHYFAS--SSHDRTARIWS-MDRIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V  +   +P G+      SS D T ++W      + +R + GH   V  + +  +  
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK 168

Query: 519 YIATGSS-DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDL 576
            +A+GSS D T++LWD+ +G+ +    GH   + SLA SPDG  + ASG  DGTI +WDL
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 577 ASGRCVTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR 635
           ++G+ +   L GH+  V + ++S +GSLLASGS+D T++LWD+ +S+             
Sbjct: 229 STGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSS------------ 275

Query: 636 LRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
              L+TL   S+ V S+ FS    L A+G+   T
Sbjct: 276 --LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           SGE ++   GH   + S+A SPDG+Y+ASG +DGTI +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 21/40 (52%), Positives = 27/40 (67%)

Query: 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           SG  +  L GHT  V ++A+S +G  LASGS D T+KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           G+ +R   GH   + S+A SPDG  +ASG +DGT+ +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
           + LR + GH   V  V +  + N +A+GS D TVR+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           G+ +  L GHT  V ++A+S +G+LLASGS D TV++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
           + L+ + GH   V  V +  +  Y+A+GS D T++LWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
            KGH  PV  V F+P G+  AS S D T R+W 
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
            KGH  PV  V F+P G Y AS S D T ++W 
Sbjct: 8   LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
            +GH+GPV S +FSP G+ + S S D T+R+W 
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 53.6 bits (128), Expect = 3e-07
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 11/149 (7%)

Query: 479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-----YIATGSSDKTVRLWD 533
           ASS+ +   ++W + R Q +  M  H   V    W I+ +      +A+GS D +V+LW 
Sbjct: 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRV----WSIDYSSADPTLLASGSDDGSVKLWS 604

Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-VTPLMGHTSCV 592
           ++ G  +       ++      S  GR +A G  D  +  +DL + +  +  ++GH+  V
Sbjct: 605 INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664

Query: 593 WTLAYSCEGSLLASGSADCTVKLWDVTTS 621
             + +  + S L S S D T+KLWD++ S
Sbjct: 665 SYVRF-VDSSTLVSSSTDNTLKLWDLSMS 692

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
            +GH+GPV S +FSP G ++ S S D TI+LW 
Sbjct: 8   LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 52.3 bits (125), Expect = 6e-07
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 445 IRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW-------SMDRIQ 496
           IRL +      ++  KGH   + D+QFNP      AS S D T R+W       S+  I+
Sbjct: 56  IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK 115

Query: 497 -PLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDV 534
            P  I+ GH   +  + W+    YI   S  D  V +WD+
Sbjct: 116 DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 58/152 (38%), Positives = 74/152 (48%), Gaps = 23/152 (15%)

Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
            SD  V L D+SS     +  GH   I S+A SPDG  + SG  DGTI +WDL +G  + 
Sbjct: 46  LSDSLVSLPDLSS----LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI 101

Query: 584 P--LMGHTSCVWTLAY-SCEGS--LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638
                 H S V  LA  S +G+  LLAS S D TVKLWD++T  K               
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK--------------L 147

Query: 639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS 670
           ++TL   S  V SL FS    L A+G+    +
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.9 bits (116), Expect = 7e-06
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASGSADCTVKLWDVTT 620
           +AS + +G + +WD+A  + VT +  H   VW++ Y S + +LLASGS D +VKLW +  
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 621 STKVLKTEEKS 631
              +   + K+
Sbjct: 608 GVSIGTIKTKA 618

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 14/183 (7%)

Query: 461 GHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM-------DRIQPLRIMAGHLSDVDCVR 512
           G   P+ DV FNP       ++S D T   W +       +   P+  + GH   V  V 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 513 WHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571
           +H +  N +A+  +D  V +WDV  G+ V +   H   I SL  + DG  + +  +D  +
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 572 MMWDLASGRCVTPLMGHTS-----CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626
            + D   G  V+ +  H S     C+W        +L  S S    + LWD         
Sbjct: 193 NIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252

Query: 627 TEE 629
           T +
Sbjct: 253 TVD 255

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 20/176 (11%)

Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--------QPLRIMAGH 504
           ++NLVC  G         F+  G +FA++  ++  +I+  + I         P+  +A  
Sbjct: 482 SSNLVCAIG---------FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR 532

Query: 505 LSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM-SPDGRYM 562
            S +  + W+    + +A+ + +  V++WDV+  + V     H   + S+   S D   +
Sbjct: 533 -SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591

Query: 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           ASG +DG++ +W +  G  +  +    +       S  G  LA GSAD  V  +D+
Sbjct: 592 ASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDL 647

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.0 bits (111), Expect = 3e-05
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 17/185 (9%)

Query: 436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDR 494
           + SS+ +  +++W    +  +   K H   VW + ++       AS S D + ++WS+++
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 495 ---IQPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGEC-VRIFIGHRSM 549
              I  ++  A    ++ CV++       +A GS+D  V  +D+ + +  +   IGH S 
Sbjct: 608 GVSIGTIKTKA----NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SK 662

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDL---ASGRCVTPL---MGHTSCVWTLAYSCEGSL 603
            +S     D   + S   D T+ +WDL    SG   TPL   MGHT+    +  S     
Sbjct: 663 TVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722

Query: 604 LASGS 608
           +A+GS
Sbjct: 723 IATGS 727

Length = 793

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 15/141 (10%)

Query: 418 QGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLV-------C-YKGHNYPVWD 468
           +GH+  +    F+P    IL+S S D TIR+W    N   V       C  KGH   +  
Sbjct: 71  KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130

Query: 469 VQFNPQGHY-FASSSHDRTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGSS 525
           + +NP  +Y   SS  D    IW ++  +      M   LS    ++W+I  N ++    
Sbjct: 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSS---LKWNIKGNLLSGTCV 187

Query: 526 DKTVRLWDVSSGECVRIFIGH 546
            K + + D    E    F  H
Sbjct: 188 GKHMHIIDPRKQEIASSFHIH 208

Length = 568

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 522 TGSSDKTVRLWDV--------SSGECVRIFIGHRSMILSLAMSPDGR-YMASGDEDGTIM 572
           T S D T+  W +         S   V +  GH   +  ++  P     +AS   D  + 
Sbjct: 93  TASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVN 151

Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           +WD+  G+ V  +  H+  + +L ++ +GSLL + S D  + + D    T V   E  + 
Sbjct: 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211

Query: 633 TNRLRSL 639
               R L
Sbjct: 212 AKSQRCL 218

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	670
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	100.0
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.65
PRK03629	429	tolB translocation protein TolB; Provisional	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG2139	445	consensus WD40 repeat protein [General function pr	99.64
KOG1310	758	consensus WD40 repeat protein [General function pr	99.63
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
KOG1334	559	consensus WD40 repeat protein [General function pr	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
KOG1310	758	consensus WD40 repeat protein [General function pr	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.58
KOG4227	609	consensus WD40 repeat protein [General function pr	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.52
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
KOG1334	559	consensus WD40 repeat protein [General function pr	99.45
KOG2321	703	consensus WD40 repeat protein [General function pr	99.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.44
PRK00178	430	tolB translocation protein TolB; Provisional	99.43
PRK04792	448	tolB translocation protein TolB; Provisional	99.43
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.38
KOG4547	541	consensus WD40 repeat-containing protein [General	99.36
KOG2315	566	consensus Predicted translation initiation factor	99.33
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.32
KOG4547	541	consensus WD40 repeat-containing protein [General	99.31
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.3
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.29
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.28
KOG2314	698	consensus Translation initiation factor 3, subunit	99.27
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.25
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.24
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.24
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.24
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.23
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.21
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.19
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.19
KOG2315	566	consensus Predicted translation initiation factor	99.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.19
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.15
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.14
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.11
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.09
COG4946	668	Uncharacterized protein related to the periplasmic	99.07
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.06
KOG2314	698	consensus Translation initiation factor 3, subunit	99.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.03
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
COG4946	668	Uncharacterized protein related to the periplasmic	99.01
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.98
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.97
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.97
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.95
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.94
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.94
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.94
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.92
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
KOG2695	425	consensus WD40 repeat protein [General function pr	98.87
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.86
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.86
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.82
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.81
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.78
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.78
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.75
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.75
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.74
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.73
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.67
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.66
KOG2695	425	consensus WD40 repeat protein [General function pr	98.61
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.59
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.58
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.58
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.56
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.54
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.49
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.48
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.43
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.41
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.4
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.38
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.37
PRK02888	635	nitrous-oxide reductase; Validated	98.35
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.35
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.35
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.33
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.25
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.24
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.18
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.16
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.11
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.09
KOG1333	241	consensus Uncharacterized conserved protein [Funct	98.08
PRK02888	635	nitrous-oxide reductase; Validated	98.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.06
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.05
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.02
KOG3621	726	consensus WD40 repeat-containing protein [General	98.02
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.0
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.0
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.99
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.93
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.9
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.87
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.87
KOG3621	726	consensus WD40 repeat-containing protein [General	97.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.86
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.79
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.78
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.73
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.72
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.7
COG3391	381	Uncharacterized conserved protein [Function unknow	97.68
COG3391	381	Uncharacterized conserved protein [Function unknow	97.66
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.61
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.59
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.54
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.54
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.52
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.51
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.44
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.43
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.42
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.32
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.28
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.27
PRK13616	591	lipoprotein LpqB; Provisional	97.27
PHA02713	557	hypothetical protein; Provisional	97.24
PRK10115	686	protease 2; Provisional	97.23
PRK13616	591	lipoprotein LpqB; Provisional	97.22
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.21
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.19
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.15
PHA02713	557	hypothetical protein; Provisional	97.12
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.11
KOG2444	238	consensus WD40 repeat protein [General function pr	97.09
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.07
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.06
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.97
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.94
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	96.89
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.88
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.85
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.79
KOG2395	644	consensus Protein involved in vacuole import and d	96.78
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.74
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.72
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.71
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.71
PHA03098	534	kelch-like protein; Provisional	96.7
PRK10115	686	protease 2; Provisional	96.7
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.65
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.63
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.61
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.59
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.59
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.55
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.48
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.47
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.41
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.32
KOG2444	238	consensus WD40 repeat protein [General function pr	96.26
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.23
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.2
KOG2395	644	consensus Protein involved in vacuole import and d	96.15
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.14
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.12
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.06
PRK13684	334	Ycf48-like protein; Provisional	96.02
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.0
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.92
PHA03098	534	kelch-like protein; Provisional	95.84
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.76
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.69
PHA02790	480	Kelch-like protein; Provisional	95.5
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.5
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.48
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.36
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.34
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.31
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.3
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.27
PHA02790	480	Kelch-like protein; Provisional	95.21
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.12
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.02
PRK13684	334	Ycf48-like protein; Provisional	94.88
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.79
KOG0396	389	consensus Uncharacterized conserved protein [Funct	94.68
PLN02153	341	epithiospecifier protein	94.51
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.4
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.33
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.05
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	93.99
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.98
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.86
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.58
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.54
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.33
PLN02193	470	nitrile-specifier protein	93.31
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.31
COG5167	776	VID27 Protein involved in vacuole import and degra	92.92
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.57
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.48
COG5276	370	Uncharacterized conserved protein [Function unknow	92.45
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.42
COG5167	776	VID27 Protein involved in vacuole import and degra	92.36
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.27
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.9
KOG2247	615	consensus WD40 repeat-containing protein [General	91.71
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.67
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.29
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.07
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.92
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.91
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.82
KOG2247	615	consensus WD40 repeat-containing protein [General	90.59
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.46
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.41
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.0
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.93
COG5276	370	Uncharacterized conserved protein [Function unknow	89.69
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.44
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.18
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.91
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.84
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.77
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.65
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.21
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.96
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.94
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.86
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.63
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.39
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.22
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	87.07
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.59
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.43
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	85.63
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.38
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.57
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	84.06
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	83.71
COG4590	733	ABC-type uncharacterized transport system, permeas	83.57
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.12
PRK13613	599	lipoprotein LpqB; Provisional	82.87
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.86
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.53
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	82.47
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	82.41
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	81.35
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.11
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	81.08
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.03
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.52
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	80.18

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9e-102  Score=821.26  Aligned_cols=634  Identities=40%  Similarity=0.692  Sum_probs=507.6

Q ss_pred             CChHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCC-CCCC------------------CCCCc--------hhhccc
Q 005913            1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNN-TNPI------------------DILND--------PELSKF   53 (670)
Q Consensus         1 ~~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~-~~~~------------------~~~~~--------~~~~~~   53 (670)
                      +.+++++++|++||+|+||++||++||+|+.+.+++.. ++..                  ++..+        .++...
T Consensus        19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   98 (707)
T KOG0263|consen   19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE   98 (707)
T ss_pred             cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence            35789999999999999999999999999987665311 1100                  00000        011111


Q ss_pred             ccccccccC--ChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHH
Q 005913           54 FRTFSESED--GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRD  131 (670)
Q Consensus        54 ~~~~~~~~~--~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~  131 (670)
                      .   .....  -|+.|+.+|..||+||+.|||+||+||.+||||+|||+||+|+++++.+.||.||++|+.||..+|.++
T Consensus        99 ~---~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~  175 (707)
T KOG0263|consen   99 K---ALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSPILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSES  175 (707)
T ss_pred             h---ccccccCCChhHhhhhhhcchhhhCcchhhhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHH
Confidence            0   01123  488899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCc---chHhHhhcceeEEEEcCCC-CCCCCcccc
Q 005913          132 LQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVSPGQ-PSSISDDAE  207 (670)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~~~~  207 (670)
                      |++|..+..++||++|+.++.||+|||+|+|++.+|++|++||++.+.   .+|++|||+||.|+++.+. ++....+.+
T Consensus       176 i~~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s~~lL~~~l~~~~~~~g~~i~~ii~~hldi~v~~~~~~r~~~~~~~  255 (707)
T KOG0263|consen  176 IFQLLSLETIKHIKENETARAFRKNKYVIRLSRDSFDLLLRFLQEDNNIGGTIIIKIINQHLDIDVFDGVMARRTTKPTA  255 (707)
T ss_pred             HHHHHhhhhHHHHhhhhhHHHHhhCcEEEEecHHHHHHHHHHhhhhccccchHHHHHHHHHhCccccccccccccccchh
Confidence            999999999999999999999999999999999999999999999877   8999999999999999873 222222222


Q ss_pred             h-----hhcccCCchhhhcccccceeecCCcchhhhhhhhcccccchhhhhcccchhhhhcccCCCCCCCCCcchhhhhh
Q 005913          208 I-----VTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLK  282 (670)
Q Consensus       208 ~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (670)
                      .     ..++|.   +..+.|+.++++|+++.+.+  ++++....      .+.+|.        +.++..+  ..++.+
T Consensus       256 ~~g~~~~~i~g~---~~~e~~~~~~~l~~~~~e~~--~~~~~~~~------~e~~D~--------~~~~~~~--~~~~~~  314 (707)
T KOG0263|consen  256 MVGSEQESIAGE---AKREINKQKVQLGLLLKEEE--IEKKLPIL------LEVEDD--------PNEPDNE--KLKKPK  314 (707)
T ss_pred             hccccccccccc---chhhcccceeeecccccchh--hhhccccc------ccCccc--------ccccccc--ccccch
Confidence            1     135553   34567789999999998443  54432110      011111        1111100  011111


Q ss_pred             hhhhhhhccccccccccccCCCCCCCCCCCCCCCCh---HHHHHHHHHcccceecCCCCCCceeEEEeecCCCCEEEEEE
Q 005913          283 KDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPT---EVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI  359 (670)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lp~~~~---~~~~~~~~~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~f  359 (670)
                      +.+.....   .+.+++    +|. .+.+|+|+...   ..+.+.+.+.++++.+....+|++|+||++++..+++|+.|
T Consensus       315 ~~~~~~~~---k~~d~~----~ps-~d~iPlPp~~~~d~~~~~~~l~d~~kr~~l~~~~lpSic~YT~~nt~~~v~ca~f  386 (707)
T KOG0263|consen  315 KKKLLSEE---KKRDPN----APS-RDRIPLPPLKQVDKLAELEALKDEQKRVKLGRNSLPSICMYTFHNTYQGVTCAEF  386 (707)
T ss_pred             hhhhhhhh---hccccC----CCc-cccCCCCcccchhHHHHHHHHHHHHHHhhcCCCCCCcEEEEEEEEcCCcceeEee
Confidence            11111000   111112    333 67888887655   56667889999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCccccccCCCC-CCC--CC-CCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913          360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQG-END--TT-PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (670)
Q Consensus       360 s~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (670)
                      |+|+++||.|+.|++|++|.+...+.......... ..+  .. ....+. ........+.+.||+++|++++|+|+.++
T Consensus       387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~-D~~~~~~~~~L~GH~GPVyg~sFsPd~rf  465 (707)
T KOG0263|consen  387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDML-DDDSSGTSRTLYGHSGPVYGCSFSPDRRF  465 (707)
T ss_pred             cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhc-cccCCceeEEeecCCCceeeeeecccccc
Confidence            99999999999999999999985432221111100 000  00 011122 22334456679999999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcC
Q 005913          436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI  515 (670)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p  515 (670)
                      |++||+|++||+|++.+..+++.|+||..|||++.|+|.|.||||||.|++.++|..+..+|++++.+|.++|.|+.|||
T Consensus       466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP  545 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP  545 (707)
T ss_pred             eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEE
Q 005913          516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL  595 (670)
Q Consensus       516 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl  595 (670)
                      |++|+++||.|.+||+||+.+|..++.|.||.++|++++|||+|++|++|+.||.|.+||+.+++.+..+.+|++.|+++
T Consensus       546 Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl  625 (707)
T KOG0263|consen  546 NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL  625 (707)
T ss_pred             cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCccccccc---------cccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          596 AYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE---------EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       596 ~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      .||.+|.+||+||.|++|++||+..........         .........++.++.++.+||.+|.|+++|.+||+|..
T Consensus       626 sFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~~  705 (707)
T KOG0263|consen  626 SFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGPF  705 (707)
T ss_pred             EEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEeccc
Confidence            999999999999999999999997755431110         01122344578899999999999999999999999875


Q ss_pred             C
Q 005913          667 S  667 (670)
Q Consensus       667 d  667 (670)
                      .
T Consensus       706 ~  706 (707)
T KOG0263|consen  706 E  706 (707)
T ss_pred             C
Confidence            3

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-46  Score=369.23  Aligned_cols=282  Identities=31%  Similarity=0.587  Sum_probs=255.7

Q ss_pred             eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      |--.+.+|.+.|.|+.|+|+|..||+|+.|.++|+||+.+                            .....+.++|..
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T----------------------------eTp~~t~KgH~~  158 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT----------------------------ETPLFTCKGHKN  158 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC----------------------------CCcceeecCCcc
Confidence            3446788999999999999999999999999999999986                            345677899999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeeCCCccEeEEEEec-----CCCEEEEEECCCcEEEEECCCCc
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ  496 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp-----~g~~l~s~s~dg~v~lwd~~~~~  496 (670)
                      .|.|++|+|||+.||+|+.||+|++||..+++++ ..+.+|...|++++|.|     ..++|++++.||+++|||+..+.
T Consensus       159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~  238 (480)
T KOG0271|consen  159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT  238 (480)
T ss_pred             EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence            9999999999999999999999999999988765 67899999999999987     56799999999999999999999


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-----------------------------------
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-----------------------------------  541 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-----------------------------------  541 (670)
                      ++..+.+|..+|+|+.|--+ .+|++|+.|++|++|+...|.+.+                                   
T Consensus       239 ~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  239 CVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            99999999999999999644 489999999999999975543322                                   


Q ss_pred             --------------------------------------------EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          542 --------------------------------------------IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       542 --------------------------------------------~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                                                                  .+.+|..-|..+.||||++++|+++.|..|++||.+
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~  397 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR  397 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC
Confidence                                                        223777889999999999999999999999999999


Q ss_pred             CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913          578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  657 (670)
Q Consensus       578 ~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~  657 (670)
                      +|+.+..+++|-++|+.++|+.|.++|++|+.|.+++||++.+..               +...+++|...|+++.|+||
T Consensus       398 tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---------------l~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  398 TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---------------LKQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             CcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---------------ecccCCCCCceEEEEEecCC
Confidence            999999999999999999999999999999999999999998853               35578899999999999999


Q ss_pred             CcEEEEeeCCC
Q 005913          658 NLLFAAGALSK  668 (670)
Q Consensus       658 ~~~La~gs~dg  668 (670)
                      |..+|+|+.|.
T Consensus       463 G~rV~sggkdk  473 (480)
T KOG0271|consen  463 GQRVASGGKDK  473 (480)
T ss_pred             CceeecCCCce
Confidence            99999999885

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.1e-45  Score=362.23  Aligned_cols=280  Identities=30%  Similarity=0.504  Sum_probs=265.6

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      -.+...+|..+.||.|+..||+|+.+|.++||+...                            .....++.||.+.|.+
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----------------------------~~~~~~l~gH~~~v~~  222 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----------------------------CNLLQTLRGHTSRVGA  222 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEeecCCceeEeecCC----------------------------cceeEEEeccccceee
Confidence            345677899999999999999999999999999875                            2467789999999999


Q ss_pred             EEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          427 ASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       427 l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      +.|+|.  +..++||+.||++++|++.+...+..+.+|...|..++|+|+|++|+|+|.|.+-++||+++++.+....||
T Consensus       223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH  302 (459)
T KOG0272|consen  223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH  302 (459)
T ss_pred             EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc
Confidence            999997  558999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~  584 (670)
                      ...|.+++|+|+|..+++|+.|..-||||+++|.++..+.+|..+|.+++|+|+|..||||+.|++++|||++..+.+..
T Consensus       303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~  382 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT  382 (459)
T ss_pred             ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913          585 LMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       585 ~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~  663 (670)
                      +.+|.+-|+.+.|+| .|.+|+|++.|++++||.-.+.               .++.++.+|.+.|.++..++++.++++
T Consensus       383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---------------~~~ksLaGHe~kV~s~Dis~d~~~i~t  447 (459)
T KOG0272|consen  383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---------------SPLKSLAGHEGKVISLDISPDSQAIAT  447 (459)
T ss_pred             cccccchhhheEecccCCeEEEEcccCcceeeecCCCc---------------ccchhhcCCccceEEEEeccCCceEEE
Confidence            999999999999999 7899999999999999998775               457888999999999999999999999


Q ss_pred             eeCCCC
Q 005913          664 GALSKT  669 (670)
Q Consensus       664 gs~dgs  669 (670)
                      +++|.|
T Consensus       448 ~s~DRT  453 (459)
T KOG0272|consen  448 SSFDRT  453 (459)
T ss_pred             eccCce
Confidence            999976

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.9e-39  Score=307.58  Aligned_cols=281  Identities=25%  Similarity=0.394  Sum_probs=255.4

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .++.+|.+.|.|+.|++|++++++++.||.+.|||.-+.                            .....+.-.+..|
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt----------------------------nK~haipl~s~WV  100 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT----------------------------NKVHAIPLPSSWV  100 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc----------------------------cceeEEecCceeE
Confidence            578999999999999999999999999999999997652                            2233344467899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      ..++|+|.|+++|+|+.|+...||++.+.      .....+.+|++-+.++.|.+|+ .|+|++.|.++.+||+++++.+
T Consensus       101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~  179 (343)
T KOG0286|consen  101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQT  179 (343)
T ss_pred             EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEE
Confidence            99999999999999999999999999865      2345688999999999999855 6899999999999999999999


Q ss_pred             EEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          499 RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                      ..|.+|.++|.+++++| +++.+++|+.|+..++||++.+.+++.|.+|...|.+++|.|+|.-+++|++|+++++||++
T Consensus       180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913          578 SGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS  655 (670)
Q Consensus       578 ~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs  655 (670)
                      ..+.+..+...  ..+|++++||..|++|++|..|.++.+||.-.++.               +..+.+|.+.|.++..+
T Consensus       260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~---------------vg~L~GHeNRvScl~~s  324 (343)
T KOG0286|consen  260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER---------------VGVLAGHENRVSCLGVS  324 (343)
T ss_pred             CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce---------------EEEeeccCCeeEEEEEC
Confidence            99988887643  36899999999999999999999999999877643               45677999999999999


Q ss_pred             cCCcEEEEeeCCCC
Q 005913          656 RRNLLFAAGALSKT  669 (670)
Q Consensus       656 ~~~~~La~gs~dgs  669 (670)
                      |||..+++|+.|.+
T Consensus       325 ~DG~av~TgSWDs~  338 (343)
T KOG0286|consen  325 PDGMAVATGSWDST  338 (343)
T ss_pred             CCCcEEEecchhHh
Confidence            99999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.2e-41  Score=332.68  Aligned_cols=261  Identities=25%  Similarity=0.453  Sum_probs=244.3

Q ss_pred             cccceecCCCCCCceeEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (670)
Q Consensus       328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (670)
                      ....+++|+...- ....+|.+|...|.++.|+|.  +..||+|+.||++++|++++                       
T Consensus       195 wsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-----------------------  250 (459)
T KOG0272|consen  195 WSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-----------------------  250 (459)
T ss_pred             cCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-----------------------
Confidence            3455677765443 345589999999999999997  66899999999999999875                       


Q ss_pred             CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                           ...+..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++..+....||...|.+++|.|||..+++||.|.
T Consensus       251 -----e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~  325 (459)
T KOG0272|consen  251 -----ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS  325 (459)
T ss_pred             -----CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence                 235566889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEE
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMAS  564 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~s  564 (670)
                      .-+|||++++.++..+.+|..+|.+|+|+|+|..||||+.|++++|||++..+++.++.+|..-|+.+.|+| .|.+|+|
T Consensus       326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T  405 (459)
T KOG0272|consen  326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVT  405 (459)
T ss_pred             hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 7899999


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      ++.|++++||...++.+++.+.||.+.|.+++.++++..++|++.|.++++|.
T Consensus       406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999999999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-40  Score=322.62  Aligned_cols=259  Identities=31%  Similarity=0.524  Sum_probs=234.1

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (670)
                      ..+++|+.... .+.+|..+|..-|.|++|||||+.||+|+.||.|++||-.+..                         
T Consensus       137 ~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-------------------------  190 (480)
T KOG0271|consen  137 TTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-------------------------  190 (480)
T ss_pred             ceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-------------------------
Confidence            47788876543 3456889999999999999999999999999999999976522                         


Q ss_pred             CccceeeeecCccCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913          410 RKRSYTLYQGHSGPVYSASFSP-----LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (670)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp-----~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d  484 (670)
                        ..-+.+.+|...|++++|.|     ..++|+++|.||+|+|||+..+.++..+.+|+.+|+|+.|..+| ++++|+.|
T Consensus       191 --~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~D  267 (480)
T KOG0271|consen  191 --QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQD  267 (480)
T ss_pred             --cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCC
Confidence              24456889999999999976     56789999999999999999999999999999999999998666 89999999


Q ss_pred             CcEEEEECCCCc--------------------------------------------------------------------
Q 005913          485 RTARIWSMDRIQ--------------------------------------------------------------------  496 (670)
Q Consensus       485 g~v~lwd~~~~~--------------------------------------------------------------------  496 (670)
                      ++|++|+...+.                                                                    
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t  347 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT  347 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence            999999865321                                                                    


Q ss_pred             -----------eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          497 -----------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       497 -----------~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                                 ++..+.+|..-|+.+.|+||++++|+++-|+.|++||.++|+.+..|++|-++|+.++|+.|.++|++|
T Consensus       348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~  427 (480)
T KOG0271|consen  348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG  427 (480)
T ss_pred             EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEc
Confidence                       333456788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       566 ~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      +.|.++++||+++.+....+.+|...|+++.|+|||..+++|+.|..+++|.
T Consensus       428 SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  428 SKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999999999999999999999999999995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3e-39  Score=319.70  Aligned_cols=277  Identities=26%  Similarity=0.506  Sum_probs=250.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      .-+|..+.|.|+|+.|++|+..|.+.+|+...                            ...-..++.|..+|.++.|+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------------------fnFEtilQaHDs~Vr~m~ws  147 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------------------FNFETILQAHDSPVRTMKWS  147 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCce----------------------------eeHHHHhhhhcccceeEEEc
Confidence            45799999999999999999999999999653                            11224467899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCee
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD  509 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~  509 (670)
                      +++.+++||+.+|.|++|+..- ..+..+.. |...|++++|+|+...|++++.||+|+|||....+..+.+.+|.-.|.
T Consensus       148 ~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  148 HNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             cCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence            9999999999999999999874 44444554 558999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC
Q 005913          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (670)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~  589 (670)
                      |++|||....|++|+.|..|++||.++|.|+.++.+|...|..+.|+|++++|++++.|..++++|+++.+.+..+++|.
T Consensus       227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk  306 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK  306 (464)
T ss_pred             eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          590 SCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       590 ~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ..|+++.|+| ...+|.+|+.||.|..|.+....++              ...-..|.+.|.+++|+|=|.+||+|+.|.
T Consensus       307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~--------------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~  372 (464)
T KOG0284|consen  307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL--------------GEIPPAHDGEIWSLAYHPLGHILATGSNDR  372 (464)
T ss_pred             hhheeeccccccccceeeccCCCceEEEeccccccc--------------cCCCcccccceeeeeccccceeEeecCCCc
Confidence            9999999999 6679999999999999999843322              223347888999999999999999999998


Q ss_pred             CC
Q 005913          669 TS  670 (670)
Q Consensus       669 s~  670 (670)
                      ++
T Consensus       373 t~  374 (464)
T KOG0284|consen  373 TV  374 (464)
T ss_pred             ce
Confidence            64

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-37  Score=290.36  Aligned_cols=292  Identities=26%  Similarity=0.413  Sum_probs=248.9

Q ss_pred             EeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          346 TFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      ++.+|.+.|+.++..+. ...+.+++.|..|.+|++...                       ....+...+.+.||+..|
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------------d~~~G~~~r~~~GHsH~v   66 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------------DIKYGVPVRRLTGHSHFV   66 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------------ccccCceeeeeeccceEe
Confidence            67889999999999986 678889999999999999752                       112245778899999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ..+..+++|++.+++|.|+++++||+.+++..+.+.+|...|.+++|++|++.+++|+.|+++.+|++-...........
T Consensus        67 ~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~  146 (315)
T KOG0279|consen   67 SDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS  146 (315)
T ss_pred             cceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999765444433332


Q ss_pred             -CCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          505 -LSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       505 -~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                       ...|.|+.|+|+  ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++.
T Consensus       147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~  226 (315)
T KOG0279|consen  147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN  226 (315)
T ss_pred             CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce
Confidence             678999999998  67999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccc-cCCCCCCeEEEEEecCCcE
Q 005913          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT-LPTKSTPVYSLQFSRRNLL  660 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~fs~~~~~  660 (670)
                      +..+ .|...|.+++|+|+.-+|+.+. +..|+|||+.+...+.......       +.. .....-...+++|+++|..
T Consensus       227 lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~-------~g~s~~~~~~~clslaws~dG~t  297 (315)
T KOG0279|consen  227 LYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG-------IGPSSKAGDPICLSLAWSADGQT  297 (315)
T ss_pred             eEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccc-------cccccccCCcEEEEEEEcCCCcE
Confidence            8776 5788999999999976666665 4569999999877654432211       111 1222223567899999999


Q ss_pred             EEEeeCCCC
Q 005913          661 FAAGALSKT  669 (670)
Q Consensus       661 La~gs~dgs  669 (670)
                      |.+|-.|+.
T Consensus       298 Lf~g~td~~  306 (315)
T KOG0279|consen  298 LFAGYTDNV  306 (315)
T ss_pred             EEeeecCCc
Confidence            999988763

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.2e-37  Score=310.34  Aligned_cols=273  Identities=26%  Similarity=0.501  Sum_probs=251.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ...|+|++|+.+|++||+|+.||.++||+...                             .....+..|.+||.++.|+
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------------~l~~tl~~HkgPI~slKWn  285 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------------NLISTLGQHKGPIFSLKWN  285 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------------hhhhhhhccCCceEEEEEc
Confidence            46799999999999999999999999999763                             3556778899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeE
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~  510 (670)
                      ..|++|++++.|+++.+||..++...+.+.-|..+-.++.|-.+ .-|++++.|+.|+++.+....|+.++.+|.+.|.+
T Consensus       286 k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a  364 (524)
T KOG0273|consen  286 KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA  364 (524)
T ss_pred             CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence            99999999999999999999999999999999998888999854 46999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC---------CEEEEEECCCeEEEEeCCCCee
Q 005913          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---------RYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g---------~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      +.|+|.+..|++++.|++++||......++..+.+|...|+.+.|+|.|         ..+++++.|++|++||+..+.+
T Consensus       365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~  444 (524)
T KOG0273|consen  365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP  444 (524)
T ss_pred             EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence            9999999999999999999999999999999999999999999999964         4799999999999999999999


Q ss_pred             eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  661 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L  661 (670)
                      +..+..|..+|++++|+|+|+++|+|+.||.|.||++..+..               +..+ .....|+.|+|+.+|..|
T Consensus       445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l---------------~~s~-~~~~~Ifel~Wn~~G~kl  508 (524)
T KOG0273|consen  445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL---------------VKSY-QGTGGIFELCWNAAGDKL  508 (524)
T ss_pred             eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe---------------eEee-cCCCeEEEEEEcCCCCEE
Confidence            999999999999999999999999999999999999988753               2333 344569999999999999


Q ss_pred             EEeeCCCC
Q 005913          662 AAGALSKT  669 (670)
Q Consensus       662 a~gs~dgs  669 (670)
                      +++..||+
T Consensus       509 ~~~~sd~~  516 (524)
T KOG0273|consen  509 GACASDGS  516 (524)
T ss_pred             EEEecCCC
Confidence            99888875

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=100.00  E-value=8.2e-39  Score=287.45  Aligned_cols=132  Identities=44%  Similarity=0.815  Sum_probs=129.3

Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhh
Q 005913           64 PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSH  143 (670)
Q Consensus        64 ~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (670)
                      |..|+++|.+||+||+++||+||+||.++||||||||||+||++|+.++|++||++|+++|+..|+++|++|++|++|+|
T Consensus         1 ~~~y~~~y~~l~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~   80 (133)
T cd08044           1 PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEH   80 (133)
T ss_pred             ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEc
Q 005913          144 LEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS  195 (670)
Q Consensus       144 ~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~  195 (670)
                      +++|++++.||+|||+|+||+.++++|++||++.++.++++|||+|+.+++.
T Consensus        81 l~~n~~~~~~r~~Ky~i~ms~~s~~lL~~~L~~~~~~~~~~il~~~i~~~~~  132 (133)
T cd08044          81 LKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLLKILNEHIDIDVR  132 (133)
T ss_pred             HhhhHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcHHHHHHHHhccccccc
Confidence            9999999999999999999999999999999999999999999999888763

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=100.00  E-value=1.6e-38  Score=288.59  Aligned_cols=133  Identities=44%  Similarity=0.821  Sum_probs=123.8

Q ss_pred             cccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcC
Q 005913           59 ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGV  138 (670)
Q Consensus        59 ~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~  138 (670)
                      ..+.||..|+++|.+|++||++|||+||+||.++||||||||||+||.+|+.++|++||+||+++|...|.++|++|+.|
T Consensus         7 ~~~~~p~~y~~~y~~l~~wv~~sld~yK~EL~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i   86 (142)
T PF04494_consen    7 IEENDPDKYEQAYSRLRNWVDNSLDIYKPELSRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSI   86 (142)
T ss_dssp             SS---GCCHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT-
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcc---hHhHhhcceeE
Q 005913          139 LSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERIN  191 (670)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~  191 (670)
                      ++|+|+++|++++.||+|||+|+||+.++.+|+.||+++++.   +|++|||+||+
T Consensus        87 ~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~~fL~~~~~~g~~~ll~iin~~i~  142 (142)
T PF04494_consen   87 TSPEHLEENELARLFRSNKYVIRLSRDSFSLLLQFLQENENSGGSVLLRIINQHIQ  142 (142)
T ss_dssp             -SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHHHHHHHTTCHTHHHHHHHHHHHEE
T ss_pred             CcHHHHhccHHHHHHHhCCeeEEECHHHHHHHHHHHHhCCcchHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999998   99999999985

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-36  Score=295.27  Aligned_cols=281  Identities=27%  Similarity=0.480  Sum_probs=262.4

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+.++...|+.+-|+|+-.++++++.|++|++||..+                            +...+.+.||...|.
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t----------------------------g~~e~~LrGHt~sv~  154 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET----------------------------GELERSLRGHTDSVF  154 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccc----------------------------hhhhhhhhcccccee
Confidence            4567888999999999999999999999999999876                            234567889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      +++|+..|++|++|+.|-.+.+||..+ .+++....+|...|.++.|-|.|.++++++.|.+|+.|+++++.++..+.+|
T Consensus       155 di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  155 DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             EEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence            999999999999999999999999987 5778888899999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC---------------CCEEEEEECCC
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD---------------GRYMASGDEDG  569 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~---------------g~~l~sg~~dg  569 (670)
                      ..-|..++.+.||..+++++.|.+|++|-+.+++|...++.|..+|-|++|.|.               |.++++++.|+
T Consensus       235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence            999999999999999999999999999999999999999999999999999872               35899999999


Q ss_pred             eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV  649 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  649 (670)
                      +|++||+.++.++.++.+|...|..++|+|.|++|+++..|++++|||+.+..               ++.+++.|..-|
T Consensus       315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~---------------cmk~~~ah~hfv  379 (406)
T KOG0295|consen  315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ---------------CMKTLEAHEHFV  379 (406)
T ss_pred             eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce---------------eeeccCCCccee
Confidence            99999999999999999999999999999999999999999999999999864               466777888899


Q ss_pred             EEEEEecCCcEEEEeeCCCC
Q 005913          650 YSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       650 ~~l~fs~~~~~La~gs~dgs  669 (670)
                      .++.|+.+-.++++|+-|-+
T Consensus       380 t~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  380 TSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             EEEecCCCCceEEeccccce
Confidence            99999999999999998864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.1e-35  Score=281.27  Aligned_cols=264  Identities=27%  Similarity=0.436  Sum_probs=234.5

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (670)
                      .++.+|+....... ..+.-...-|..++|+|.|+++|+|+-|....||++.....                      .+
T Consensus        77 GklIvWDs~TtnK~-haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~----------------------~g  133 (343)
T KOG0286|consen   77 GKLIVWDSFTTNKV-HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA----------------------EG  133 (343)
T ss_pred             CeEEEEEcccccce-eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc----------------------cc
Confidence            36667765433322 22222344699999999999999999999999999975211                      11


Q ss_pred             CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEE
Q 005913          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR  488 (670)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~  488 (670)
                      ..+..+.+.+|.+-+.|+.|-+ ...|+++|.|.++.+||+++++.+..|.+|.+.|.++.++| +++.|++|+.|++.+
T Consensus       134 ~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  134 NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence            2345677899999999999997 56789999999999999999999999999999999999999 999999999999999


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEE
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~  566 (670)
                      +||++.+..++.|.+|.++|++++|+|+|.-+++|+.|+++|+||++..+.+..+...  ..+|++++||..|++|++|.
T Consensus       213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence            9999999999999999999999999999999999999999999999999999888633  34799999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      .|..+.+||.-.++.+..+.+|.+.|+++..+|||.-+++|+.|.+++||.
T Consensus       293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999999999999999999999999999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1e-35  Score=299.54  Aligned_cols=289  Identities=26%  Similarity=0.441  Sum_probs=251.1

Q ss_pred             EeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee----ecC
Q 005913          346 TFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY----QGH  420 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h  420 (670)
                      ...+|...|.+++|+|-.. ++|+|+.|...++|++..........                  ...+....+    ...
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q------------------~~lrh~~~~~~~s~~~  234 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ------------------LVLRHCIREGGKSVPS  234 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh------------------hhhhhhhhhhcccCCc
Confidence            4556889999999999766 99999999999999987411100000                  000001111    123


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      +..|++++|+.+|..|++|+.||.+++|+.. +..+.++..|.+||.++.|+..|.||++++.|+++.+||..++.....
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            4679999999999999999999999999987 777888889999999999999999999999999999999999999999


Q ss_pred             ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      +.-|..+-..|.|- +...+++++.|+.|+++-+....++.++.+|.++|.++.|+|.|.+|++++.|++++||.+....
T Consensus       314 f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  314 FEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             eeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence            99998887888885 44578899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeeCCCcceEEEEEcCCC---------CEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913          581 CVTPLMGHTSCVWTLAYSCEG---------SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS  651 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~~g---------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  651 (670)
                      +...+.+|+..|+.+.|+|.|         ..+++++.|++|++||+..+.               ++.++..|..||++
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---------------~i~~f~kH~~pVys  457 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---------------PIHTLMKHQEPVYS  457 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---------------eeEeeccCCCceEE
Confidence            999999999999999999965         489999999999999999875               46778899999999


Q ss_pred             EEEecCCcEEEEeeCCCC
Q 005913          652 LQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       652 l~fs~~~~~La~gs~dgs  669 (670)
                      |+|+|+|+++|+|+.||.
T Consensus       458 vafS~~g~ylAsGs~dg~  475 (524)
T KOG0273|consen  458 VAFSPNGRYLASGSLDGC  475 (524)
T ss_pred             EEecCCCcEEEecCCCCe
Confidence            999999999999999984

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2e-35  Score=282.47  Aligned_cols=281  Identities=25%  Similarity=0.447  Sum_probs=252.3

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+.+|.+.|.++.|+|+|.+||+|+.|..|.+|++...                           ......+++|+++|.
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd---------------------------ceN~~~lkgHsgAVM   94 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD---------------------------CENFWVLKGHSGAVM   94 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc---------------------------ccceeeeccccceeE
Confidence            46788899999999999999999999999999997641                           234556779999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      .+.|.+|++.|++++.|.+|+.||+++++++..+++|..-|.++.-+.-|. .+.+|+.||++++||+++..++..+. .
T Consensus        95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~  173 (338)
T KOG0265|consen   95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-N  173 (338)
T ss_pred             eeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-c
Confidence            999999999999999999999999999999999999999999998655554 56778899999999999988888775 4


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC----Ce
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----GR  580 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~----~~  580 (670)
                      ..+++++.|...+..+++|+-|+.|.+||++.+....++.||..+|+.+..+|+|.++.+-+.|.++++||++-    .+
T Consensus       174 kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  174 KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999974    35


Q ss_pred             eeEEeeCCCc----ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          581 CVTPLMGHTS----CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       581 ~~~~~~~h~~----~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                      ++..+.+|..    ....++|+|+++.+..|+.|..+++||....               ..++.+++|.+.|.++.|+|
T Consensus       254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---------------~~lyklpGh~gsvn~~~Fhp  318 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---------------RILYKLPGHYGSVNEVDFHP  318 (338)
T ss_pred             eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---------------cEEEEcCCcceeEEEeeecC
Confidence            5777877642    3457899999999999999999999998774               35788999999999999999


Q ss_pred             CCcEEEEeeCCCC
Q 005913          657 RNLLFAAGALSKT  669 (670)
Q Consensus       657 ~~~~La~gs~dgs  669 (670)
                      ...+|.+++.|++
T Consensus       319 ~e~iils~~sdk~  331 (338)
T KOG0265|consen  319 TEPIILSCSSDKT  331 (338)
T ss_pred             CCcEEEEeccCce
Confidence            9999999999876

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3e-34  Score=292.08  Aligned_cols=281  Identities=36%  Similarity=0.664  Sum_probs=254.7

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      ++.+|.+.|+|++|+|++++|++|+.+|.|++|++...                            .....+.+|...+.
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----------------------------~~~~~~~~~~~~i~   55 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------------------ELLRTLKGHTGPVR   55 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------CcEEEEecCCccee
Confidence            35578899999999999999999999999999998741                            23455678889999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      ++.|+|+++++++++.||.|++|++.+++.+..+..|...|.++.|++++.++++++.|+.+++||+.+++....+..|.
T Consensus        56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  135 (289)
T cd00200          56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT  135 (289)
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC
Confidence            99999999999999999999999999888888899999999999999998888888889999999999888888888999


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      ..+.+++|+|++.++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++.+|.|++||+.+++.+..+
T Consensus       136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence            99999999999999999888999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      ..|...|.++.|+|++.++++++.||.|++|++..+..               +..+..+..+|.+++|++++.+|++++
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC---------------VQTLSGHTNSVTSLAWSPDGKRLASGS  280 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee---------------EEEccccCCcEEEEEECCCCCEEEEec
Confidence            88999999999999998999888899999999986432               334456777899999999999999999


Q ss_pred             CCCC
Q 005913          666 LSKT  669 (670)
Q Consensus       666 ~dgs  669 (670)
                      .||.
T Consensus       281 ~d~~  284 (289)
T cd00200         281 ADGT  284 (289)
T ss_pred             CCCe
Confidence            9875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=270.08  Aligned_cols=284  Identities=20%  Similarity=0.405  Sum_probs=244.5

Q ss_pred             HcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       327 ~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      .+...+++|.. ...+|..|+....+.|+.+.+.||++.||+| ....||+||+++.                       
T Consensus        17 ~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~-----------------------   71 (311)
T KOG0315|consen   17 GYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAA-GNQHVRLYDLNSN-----------------------   71 (311)
T ss_pred             cCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhc-cCCeeEEEEccCC-----------------------
Confidence            45667888864 4567888888888899999999999999998 5678999999852                       


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~  486 (670)
                         +......+.+|...|+++.|..+|+++++||+||+++|||++...+.+.|+ |..+|.++..+|+...|++|..+|.
T Consensus        72 ---np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~  147 (311)
T KOG0315|consen   72 ---NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGN  147 (311)
T ss_pred             ---CCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCc
Confidence               233677889999999999999999999999999999999999877666666 7799999999999999999999999


Q ss_pred             EEEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC------cEEEEEecCCCCeEEEEEcCCC
Q 005913          487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG------ECVRIFIGHRSMILSLAMSPDG  559 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~------~~~~~~~~h~~~I~~l~~sp~g  559 (670)
                      |++||+....+...+. .....|.++...|+|.+++.+...|.+++|++-+.      .++..+..|.+.+..+.+||++
T Consensus       148 irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~  227 (311)
T KOG0315|consen  148 IRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV  227 (311)
T ss_pred             EEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence            9999998876555443 44567999999999999999999999999999764      3566788999999999999999


Q ss_pred             CEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          560 RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       560 ~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      ++||+++.|.+++||+..+. +.-..+.+|...++.++||.||.+|++|+.|+.+++|++..++.               
T Consensus       228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~---------------  292 (311)
T KOG0315|consen  228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE---------------  292 (311)
T ss_pred             cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce---------------
Confidence            99999999999999999887 55567889999999999999999999999999999999999764               


Q ss_pred             ccccCCCCCCeEEEEE
Q 005913          639 LKTLPTKSTPVYSLQF  654 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~f  654 (670)
                      +..+++|..+..|++.
T Consensus       293 v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  293 VRQYQGHHKAAVCVAL  308 (311)
T ss_pred             eeecCCcccccEEEEe
Confidence            3455566555555543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3e-35  Score=286.57  Aligned_cols=293  Identities=23%  Similarity=0.445  Sum_probs=261.5

Q ss_pred             CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      |-.....+.+|.+-|.|+++.|-..++++|+.|++|+|||+.+                            +.....+.|
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat----------------------------g~LkltltG  191 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT----------------------------GQLKLTLTG  191 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc----------------------------CeEEEeecc
Confidence            3333345667888999999999999999999999999999986                            345567889


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      |-..|..+++|+-..|+++++.|+.|+.||+...+.++.|.||-..|.+++.+|.-..+++|+.|.++++||+++...+.
T Consensus       192 hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~  271 (460)
T KOG0285|consen  192 HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH  271 (460)
T ss_pred             hhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      .+.||...|..+.+.|-...+++|+.|++|++||++.|+....+..|...+.+++.+|....+|+++.|. |+-|++..|
T Consensus       272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g  350 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG  350 (460)
T ss_pred             EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc
Confidence            9999999999999999899999999999999999999999999999999999999999999999998874 999999999


Q ss_pred             eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  659 (670)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~  659 (670)
                      ..+..+.+|+.-|.+++.+.|| ++++|+.+|.+.+||.+++...+..+....+      ..+ .....|++.+|...|.
T Consensus       351 ~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp------GSl-~sEagI~as~fDktg~  422 (460)
T KOG0285|consen  351 EFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP------GSL-ESEAGIFASCFDKTGS  422 (460)
T ss_pred             chhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccC------Ccc-ccccceeEEeecccCc
Confidence            9999999999999999988765 8999999999999999998654333211111      111 2345799999999999


Q ss_pred             EEEEeeCCCC
Q 005913          660 LFAAGALSKT  669 (670)
Q Consensus       660 ~La~gs~dgs  669 (670)
                      .|++|..|++
T Consensus       423 rlit~eadKt  432 (460)
T KOG0285|consen  423 RLITGEADKT  432 (460)
T ss_pred             eEEeccCCcc
Confidence            9999999876

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3e-34  Score=313.89  Aligned_cols=281  Identities=30%  Similarity=0.581  Sum_probs=250.1

Q ss_pred             EeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          346 TFINT-HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       346 t~~~~-~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      ++..+ ...|+|+.|+++|+++++++.++.+++|+......                          .....+.+|...|
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------~~~~~l~~h~~~v  206 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------NLLRELSGHTRGV  206 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------hhhccccccccce
Confidence            34343 67899999999999999999999999999854110                          1334447899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      ++++|+|++.++++|+.|++|++||+ ..+.+++++++|...|.+++|+|+|+.+++|+.|++|++||++++++++.+.+
T Consensus       207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~  286 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG  286 (456)
T ss_pred             eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence            99999999999999999999999999 55588999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCC--eEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~--I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      |...|.+++|++++++|++++.|+.|++||+.++.  ++..+.++...  +++++|+|+|.++++++.|+.+++||+..+
T Consensus       287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            99999999999999999999999999999999999  66777777665  999999999999999999999999999999


Q ss_pred             eeeEEeeCCCcc---eEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC-CCCeEEEEEe
Q 005913          580 RCVTPLMGHTSC---VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFS  655 (670)
Q Consensus       580 ~~~~~~~~h~~~---V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~fs  655 (670)
                      ..+..+.+|...   +.+...++.+.++++|+.|+.|.+|++.+...               +..+..| ...|..+.++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~---------------~~~l~~h~~~~~~~~~~~  431 (456)
T KOG0266|consen  367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI---------------LQRLEGHSKAAVSDLSSH  431 (456)
T ss_pred             cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch---------------hhhhcCCCCCceeccccC
Confidence            999999998864   45556678999999999999999999988542               4455666 7889999999


Q ss_pred             cCCcEEEEeeCC
Q 005913          656 RRNLLFAAGALS  667 (670)
Q Consensus       656 ~~~~~La~gs~d  667 (670)
                      +...++++++.+
T Consensus       432 ~~~~~~~s~s~~  443 (456)
T KOG0266|consen  432 PTENLIASSSFE  443 (456)
T ss_pred             CCcCeeeecCcC
Confidence            999999999853

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6e-35  Score=311.58  Aligned_cols=237  Identities=33%  Similarity=0.580  Sum_probs=221.6

Q ss_pred             ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------------------------------ceeEEeeCCCccE
Q 005913          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-------------------------------ANLVCYKGHNYPV  466 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~-------------------------------~~~~~~~~h~~~V  466 (670)
                      ..-...++|..|++++.+||.|..|..|++|.+...                               .....+.||.+||
T Consensus       375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            334467999999999999999999999999988621                               1124467899999


Q ss_pred             eEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC
Q 005913          467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH  546 (670)
Q Consensus       467 ~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h  546 (670)
                      ..+.|+|+.++|+++|.|+++|+|++++...+-.+.||..+|.++.|+|.|-|+|+++.|++-++|......+.+.|.+|
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh  534 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH  534 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccc
Q 005913          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (670)
Q Consensus       547 ~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~  626 (670)
                      -+.|.|+.|+|++.|+++|+.|.++++||..+|..+..|.||.++|.+++|||+|++|++|+.||.|.+||+.++.    
T Consensus       535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~----  610 (707)
T KOG0263|consen  535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS----  610 (707)
T ss_pred             ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999874    


Q ss_pred             cccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          627 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                                 ++..+.+|.+.|+++.||++|.+||+|+.|.+
T Consensus       611 -----------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  611 -----------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             -----------chhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence                       46677888999999999999999999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-34  Score=270.29  Aligned_cols=247  Identities=27%  Similarity=0.441  Sum_probs=217.4

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      ...+.+|.-.|+.+..++||++.++|+.|+.+++||+.+                            ....+.+.||...
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~----------------------------g~~t~~f~GH~~d  107 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT----------------------------GESTRRFVGHTKD  107 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecC----------------------------CcEEEEEEecCCc
Confidence            456778888899999999999999999999999999985                            3567889999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCceeEE
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      |.+++|++|++.+++||.|.+|++|++........... +..-|.|+.|+|+  ..+|++++.|++|++||+++.+....
T Consensus       108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~  187 (315)
T KOG0279|consen  108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT  187 (315)
T ss_pred             eEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence            99999999999999999999999999985444333333 3788999999997  78999999999999999999999999


Q ss_pred             ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      +.+|.+.++.++++|||..+++|+.||.+.+||++.++++..+ +|...|.+++|+|+..+|+.+.. ..|+|||+.++.
T Consensus       188 ~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~  265 (315)
T KOG0279|consen  188 FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKA  265 (315)
T ss_pred             cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeeccC-CceEEEeccchh
Confidence            9999999999999999999999999999999999999998877 57889999999999877776654 459999999998


Q ss_pred             eeEEeeC----C-----CcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          581 CVTPLMG----H-----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       581 ~~~~~~~----h-----~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ++..+..    .     .-...+++|+++|..|++|-.|+.|++|.+..
T Consensus       266 ~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  266 VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            8876642    1     22356789999999999999999999998753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-33  Score=297.25  Aligned_cols=303  Identities=25%  Similarity=0.443  Sum_probs=254.4

Q ss_pred             CCceeEEEeec-CCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee
Q 005913          339 LPSVSFYTFIN-THNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (670)
Q Consensus       339 ~ps~~~~t~~~-~~~~V~~l~fs~d~~~La~g~~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (670)
                      +|...+..... ....|..++|+..|.+||.|+.. |.+-||+++.                            ...+..
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----------------------------EsYVlK  345 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----------------------------ESYVLK  345 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec----------------------------cceeee
Confidence            45544433333 34789999999999999998765 8999999875                            234455


Q ss_pred             eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~  496 (670)
                      .++|...+++++++|||.++++|+.||.|+|||..++-|..++..|+..|+.++|+..|+.+++.|-||+|+.||+.+..
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeccc-CCCeeEEEEcCCCCEEEEEEcCC-cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913          497 PLRIMAGH-LSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       497 ~~~~~~~~-~~~v~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw  574 (670)
                      ..+++... .-...|++..|.|..+++|+.|. .|.+|++++|+.+-.+.||.+||.+++|+|+|..|++|+.|.+|++|
T Consensus       426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW  505 (893)
T ss_pred             eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence            99998754 34578999999999999999886 69999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc----cCCccccc-ccccCCCCCCe
Q 005913          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK----SGTNRLRS-LKTLPTKSTPV  649 (670)
Q Consensus       575 Dl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~V  649 (670)
                      |+-......+--.+.+.+..++|+|+|..|++++.||.|.+||+..+......+..    .+....+. .+.-..+..+.
T Consensus       506 ~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F  585 (893)
T KOG0291|consen  506 DIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF  585 (893)
T ss_pred             EeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence            99755433333356778999999999999999999999999999887665444321    12111111 22233455679


Q ss_pred             EEEEEecCCcEEEEeeCCCC
Q 005913          650 YSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       650 ~~l~fs~~~~~La~gs~dgs  669 (670)
                      +.+++|+||.++.+|+...+
T Consensus       586 tti~ySaDG~~IlAgG~sn~  605 (893)
T KOG0291|consen  586 TTICYSADGKCILAGGESNS  605 (893)
T ss_pred             EEEEEcCCCCEEEecCCccc
Confidence            99999999999999987654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=262.63  Aligned_cols=263  Identities=22%  Similarity=0.368  Sum_probs=232.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC
Q 005913          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (670)
Q Consensus       363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D  442 (670)
                      .-+||+++.|-+||+|...+                            +...+++....+.|+.+...|+++.|++++. 
T Consensus        10 ~viLvsA~YDhTIRfWqa~t----------------------------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-   60 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALT----------------------------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-   60 (311)
T ss_pred             ceEEEeccCcceeeeeehhc----------------------------CeEEEEEecCccceeeEEEcCCcchhhhccC-
Confidence            45789999999999999875                            4456666767789999999999999999886 


Q ss_pred             CeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE
Q 005913          443 TTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI  520 (670)
Q Consensus       443 g~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l  520 (670)
                      -.||+||++++.  ++..|.+|+..|..+.|..+|+.+++||.||+++|||++...+.+.+. |.++|+++..||+...|
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteL  139 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTEL  139 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceE
Confidence            469999999875  488999999999999999999999999999999999999987777776 66999999999999999


Q ss_pred             EEEEcCCcEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC------eeeEEeeCCCcceE
Q 005913          521 ATGSSDKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG------RCVTPLMGHTSCVW  593 (670)
Q Consensus       521 ~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~------~~~~~~~~h~~~V~  593 (670)
                      ++|..+|.|++||+.+..+...+... ..+|.++...|||.+|+.+...|..++|++-+.      .++..++.|.+-+.
T Consensus       140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il  219 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL  219 (311)
T ss_pred             EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence            99999999999999988777666543 457999999999999999999999999999764      45667889999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       594 sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .+.+||++++|+++|+|.+++||+.+..-              ..-..+..|...+..++||.+|.+|++|+.|+.
T Consensus       220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~--------------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~  281 (311)
T KOG0315|consen  220 RCLLSPDVKYLATCSSDKTVKIWNTDDFF--------------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHT  281 (311)
T ss_pred             EEEECCCCcEEEeecCCceEEEEecCCce--------------eeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence            99999999999999999999999988751              123456788889999999999999999999864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.1e-35  Score=290.36  Aligned_cols=263  Identities=24%  Similarity=0.455  Sum_probs=232.5

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+-||+...=... +....|...|+++.||++|.++++|..+|.|++|+.+-                          
T Consensus       117 SGEFtLWNg~~fnFE-tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--------------------------  169 (464)
T KOG0284|consen  117 SGEFTLWNGTSFNFE-TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--------------------------  169 (464)
T ss_pred             cccEEEecCceeeHH-HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--------------------------
Confidence            446667776321111 12356888999999999999999999999999999652                          


Q ss_pred             CCccceeeeecC-ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913          409 GRKRSYTLYQGH-SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (670)
Q Consensus       409 ~~~~~~~~~~~h-~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v  487 (670)
                         ..+....+| ...|.+++|+|+...+++||.||+|+|||....+.-..+.+|...|.+++|+|....+++||.|..|
T Consensus       170 ---nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlV  246 (464)
T KOG0284|consen  170 ---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLV  246 (464)
T ss_pred             ---hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCcee
Confidence               223334444 4999999999999999999999999999999888888889999999999999999999999999999


Q ss_pred             EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 005913          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD  566 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~  566 (670)
                      ++||.+++.++.++.+|...|..+.|+|++++|++++.|..++++|+++.+.++.+++|...+++++|+| ...+|.+|+
T Consensus       247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg  326 (464)
T KOG0284|consen  247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG  326 (464)
T ss_pred             EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 566888999


Q ss_pred             CCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          567 EDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .||.|..|.+...+++..+. +|...|++++|+|=|.+|++|+.|.++++|.-...
T Consensus       327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            99999999998667766654 79999999999999999999999999999986543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.8e-32  Score=319.78  Aligned_cols=298  Identities=17%  Similarity=0.304  Sum_probs=241.8

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +.+|.+.|++++|+|+|++||+|+.|+.|+||++........                    ........+ .+...|.+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~--------------------~~~~~~~~~-~~~~~v~~  537 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR--------------------DIHYPVVEL-ASRSKLSG  537 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc--------------------ccccceEEe-cccCceee
Confidence            345788899999999999999999999999999763100000                    000011122 23468999


Q ss_pred             EEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          427 ASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       427 l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ++|++. +.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+..+
T Consensus       538 l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~  617 (793)
T PLN00181        538 ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK  617 (793)
T ss_pred             EEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence            999874 68999999999999999999999999999999999999997 7899999999999999999999888888755


Q ss_pred             CCCeeEEEEc-CCCCEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC----
Q 005913          505 LSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----  578 (670)
Q Consensus       505 ~~~v~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~----  578 (670)
                       ..|.++.|+ +++++|++|+.||.|++||+++++ .+..+.+|...|.++.|. ++.+|++++.|+.|++||+..    
T Consensus       618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence             689999995 579999999999999999998876 567788999999999997 688999999999999999974    


Q ss_pred             --CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          579 --GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       579 --~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                        +.++..+.+|...+..++|++++.+|++|+.||.|++|+................ ... -.....+...|.+++|+|
T Consensus       696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~-~~~-~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTID-PVS-GLEVDDASQFISSVCWRG  773 (793)
T ss_pred             cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCC-ccc-ccccCCCCcEEEEEEEcC
Confidence              3577889999999999999999999999999999999998765432211100000 000 011234556799999999


Q ss_pred             CCcEEEEeeCCCC
Q 005913          657 RNLLFAAGALSKT  669 (670)
Q Consensus       657 ~~~~La~gs~dgs  669 (670)
                      ++.+|++|+.+|+
T Consensus       774 ~~~~lva~~~dG~  786 (793)
T PLN00181        774 QSSTLVAANSTGN  786 (793)
T ss_pred             CCCeEEEecCCCc
Confidence            9999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-33  Score=258.38  Aligned_cols=281  Identities=23%  Similarity=0.373  Sum_probs=248.7

Q ss_pred             CCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee
Q 005913          339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (670)
Q Consensus       339 ~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (670)
                      +|.....++..+.+.|.++.|+-||+|.++++.|.+|++|+...                            ...++++.
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r----------------------------g~liktYs   56 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR----------------------------GALIKTYS   56 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc----------------------------cceeeeec
Confidence            45555667788899999999999999999999999999999653                            45778899


Q ss_pred             cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC--Cc
Q 005913          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--IQ  496 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~--~~  496 (670)
                      +|...|..++.+.|+..+++|+.|..|.+||+.+++.+..+.+|...|..+.|+.+...+++|+.|.++++||.+.  .+
T Consensus        57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e  136 (307)
T KOG0316|consen   57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE  136 (307)
T ss_pred             CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999874  57


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      |++++......|.++..  .+..|++|+.||++|.||++.|+...-+.+  .+|+|+.|+++|++.++++.|+++++.|-
T Consensus       137 PiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk  212 (307)
T KOG0316|consen  137 PIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDK  212 (307)
T ss_pred             ccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeeccc
Confidence            88888888889999887  567899999999999999999988776655  57999999999999999999999999999


Q ss_pred             CCCeeeEEeeCCCcceE--EEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC-eEEEE
Q 005913          577 ASGRCVTPLMGHTSCVW--TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP-VYSLQ  653 (670)
Q Consensus       577 ~~~~~~~~~~~h~~~V~--sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-V~~l~  653 (670)
                      .+|+.++.+.+|...=+  .++++.....+++|+.||.|.+||+.....               +..++.+..+ |.+++
T Consensus       213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~---------------~sk~~~~~~v~v~dl~  277 (307)
T KOG0316|consen  213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ---------------ISKLSVVSTVIVTDLS  277 (307)
T ss_pred             chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee---------------eeeeccCCceeEEeee
Confidence            99999999999986544  456777778999999999999999988643               4556666666 89999


Q ss_pred             EecCCcEEEEeeC
Q 005913          654 FSRRNLLFAAGAL  666 (670)
Q Consensus       654 fs~~~~~La~gs~  666 (670)
                      ++|.-..+.+++.
T Consensus       278 ~hp~~~~f~~A~~  290 (307)
T KOG0316|consen  278 CHPTMDDFITATG  290 (307)
T ss_pred             cccCccceeEecC
Confidence            9998766665544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=289.72  Aligned_cols=277  Identities=24%  Similarity=0.437  Sum_probs=247.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ....|+|++|++..++||+|...|...+|.+..                            ...+..+.-...+|..++|
T Consensus       264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~----------------------------f~lih~LSis~~~I~t~~~  315 (893)
T KOG0291|consen  264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD----------------------------FNLIHSLSISDQKILTVSF  315 (893)
T ss_pred             cccceeeeeccCCceEEEEEecCCeeEEEecCC----------------------------ceEEEEeecccceeeEEEe
Confidence            347899999999999999999999999999875                            2244445555678999999


Q ss_pred             cCCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe
Q 005913          430 SPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (670)
Q Consensus       430 sp~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v  508 (670)
                      +..|++|+.|+. -|.+-||++.+...+...++|...+.+++++|||+++|+|+.||.|++||...+-++.+|..|.+.|
T Consensus       316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V  395 (893)
T KOG0291|consen  316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV  395 (893)
T ss_pred             cccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce
Confidence            999999998875 4899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEECCC-eEEEEeCCCCeeeEEee
Q 005913          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVTPLM  586 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~sg~~dg-~I~iwDl~~~~~~~~~~  586 (670)
                      +.+.|+..|+.+++.+-||+||.||+...++.++|.... ....|++..|.|..+.+|+.|. .|.+|++.+|+.+-.+.
T Consensus       396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence            999999999999999999999999999999999997643 3578899999999999998876 59999999999999999


Q ss_pred             CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       587 ~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      ||.++|.+++|+|++..|++||.|.+|++||+-....              .+.++ .....|..++|+|+|.-||+++.
T Consensus       476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--------------~vEtl-~i~sdvl~vsfrPdG~elaVaTl  540 (893)
T KOG0291|consen  476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--------------TVETL-EIRSDVLAVSFRPDGKELAVATL  540 (893)
T ss_pred             CCCCcceeeEEccccCeEEeccccceEEEEEeeccCc--------------eeeeE-eeccceeEEEEcCCCCeEEEEEe
Confidence            9999999999999999999999999999999976532              12222 23457999999999999999999


Q ss_pred             CCC
Q 005913          667 SKT  669 (670)
Q Consensus       667 dgs  669 (670)
                      ||.
T Consensus       541 dgq  543 (893)
T KOG0291|consen  541 DGQ  543 (893)
T ss_pred             cce
Confidence            873

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.7e-34  Score=298.58  Aligned_cols=296  Identities=26%  Similarity=0.416  Sum_probs=264.9

Q ss_pred             ccccccccCCCCCCCCCCCCCCCChHHHHHHHHHcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005913          294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDS  373 (670)
Q Consensus       294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg  373 (670)
                      .+..+.++.++|.+..++++..++|...+..+..+...+++|+.....+....-++ .+.|+++.|+++|++||+|..+|
T Consensus       161 ~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g  239 (484)
T KOG0305|consen  161 IPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDG  239 (484)
T ss_pred             ccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCC
Confidence            35567899999999999999999999888888899999999999888776665555 78899999999999999999999


Q ss_pred             cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec-CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 005913          374 SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL  452 (670)
Q Consensus       374 ~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~  452 (670)
                      .|.|||....                            +....+.+ |...|-+++|+  +..+.+|+.|+.|..+|++.
T Consensus       240 ~v~iwD~~~~----------------------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  240 TVQIWDVKEQ----------------------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             eEEEEehhhc----------------------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence            9999998752                            23334445 99999999999  77899999999999999998


Q ss_pred             CceeEE-eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcC-CCCEEEEE--EcCCc
Q 005913          453 NANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATG--SSDKT  528 (670)
Q Consensus       453 ~~~~~~-~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tg--s~dg~  528 (670)
                      .+.... +.+|...|+.+.|++++.++|+|+.|+.+.|||.....+...+..|.+.|.+++|+| ..+.||+|  +.|++
T Consensus       290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC  369 (484)
T ss_pred             chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence            876655 889999999999999999999999999999999998899999999999999999999 45678875  47999


Q ss_pred             EEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE--EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEE
Q 005913          529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS  606 (670)
Q Consensus       529 I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s--g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~s  606 (670)
                      |++||+.+|..+.... ..+.|.++.|++..+-|++  |..++.|.||+..+.+.+..+.+|...|..++++|||..+++
T Consensus       370 i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT  448 (484)
T ss_pred             EEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence            9999999999998775 5578999999999887776  456789999999999999999999999999999999999999


Q ss_pred             EECCCcEEEEeCCCC
Q 005913          607 GSADCTVKLWDVTTS  621 (670)
Q Consensus       607 gs~Dg~I~iwd~~~~  621 (670)
                      |+.|.++++|++...
T Consensus       449 ~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  449 GAADETLRFWNLFDE  463 (484)
T ss_pred             ecccCcEEeccccCC
Confidence            999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.7e-32  Score=256.73  Aligned_cols=288  Identities=23%  Similarity=0.418  Sum_probs=239.6

Q ss_pred             eEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          343 SFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      ...++.+|.+.+..++|+|- |..||+|+.|..|+||++.....                        -.-....-.+|+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s------------------------~~ck~vld~~hk   61 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS------------------------WTCKTVLDDGHK   61 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc------------------------EEEEEeccccch
Confidence            34567788889999999998 89999999999999999873100                        001112234799


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC---Cc
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---IQ  496 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~--~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~---~~  496 (670)
                      ..|.+++|+|.|++|+++|.|.++.||.-..  .+++..+.||...|.+++|+++|.+||+++.|+.|-||.+..   ..
T Consensus        62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe  141 (312)
T KOG0645|consen   62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE  141 (312)
T ss_pred             heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence            9999999999999999999999999998653  467889999999999999999999999999999999999874   35


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC---CCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                      +...+.+|...|..+.|||....|++++.|.+|++|+-.   ...++.++.+|...|.+++|++.|..|++++.|++++|
T Consensus       142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I  221 (312)
T KOG0645|consen  142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI  221 (312)
T ss_pred             EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence            677889999999999999999999999999999999866   34689999999999999999999999999999999999


Q ss_pred             EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccc-cccCCCCCCeEEE
Q 005913          574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL-KTLPTKSTPVYSL  652 (670)
Q Consensus       574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~l  652 (670)
                      |-..+.-.    ..|+..++.+.|.  ...|++++.|+.|++|.-......         ..+.++ ..-..|...|+++
T Consensus       222 w~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~---------p~~~l~~~~~~aHe~dVNsV  286 (312)
T KOG0645|consen  222 WRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE---------PSWNLLAKKEGAHEVDVNSV  286 (312)
T ss_pred             eeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC---------chHHHHHhhhcccccccceE
Confidence            98663221    2377899999998  558999999999999987643111         111222 2345677799999


Q ss_pred             EEecC-CcEEEEeeCCCC
Q 005913          653 QFSRR-NLLFAAGALSKT  669 (670)
Q Consensus       653 ~fs~~-~~~La~gs~dgs  669 (670)
                      +|.|. ..+|++|+.||.
T Consensus       287 ~w~p~~~~~L~s~~DDG~  304 (312)
T KOG0645|consen  287 QWNPKVSNRLASGGDDGI  304 (312)
T ss_pred             EEcCCCCCceeecCCCce
Confidence            99994 568899999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-33  Score=275.30  Aligned_cols=247  Identities=33%  Similarity=0.573  Sum_probs=232.9

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .++.+|.++|..++|+..|++||+++.|=.+++||..+.                           ....+.+.+|...|
T Consensus       144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---------------------------~~c~ks~~gh~h~v  196 (406)
T KOG0295|consen  144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---------------------------FRCIKSLIGHEHGV  196 (406)
T ss_pred             hhhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------------HHHHHHhcCcccce
Confidence            356788889999999999999999999999999998741                           24566778999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      .+++|-|.|+++++++.|.+|+.|++.++-++.++.+|..-|..++.+.||..+++++.|.++++|-+.++++...+..|
T Consensus       197 S~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h  276 (406)
T KOG0295|consen  197 SSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH  276 (406)
T ss_pred             eeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             CCCeeEEEEcCC---------------CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913          505 LSDVDCVRWHIN---------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       505 ~~~v~~v~~~p~---------------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg  569 (670)
                      .-+|.|++|-|.               +.++++++.|++|++||+.++.|+.++.+|...|..++|+|.|+||+++.+|+
T Consensus       277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk  356 (406)
T KOG0295|consen  277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK  356 (406)
T ss_pred             ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC
Confidence            999999999762               25899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      ++++||+.++++++.+..|...|++++|+.+..++++|+-|.++++|..
T Consensus       357 tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  357 TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999999999999999999999999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.8e-34  Score=278.58  Aligned_cols=270  Identities=28%  Similarity=0.559  Sum_probs=232.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ...+|.|+.+.  ...+++|..|.+|+|||.+.                            ....+.+.||++.|.|+.|
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------------~~c~~~L~GHtGSVLCLqy  245 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------------LECLKILTGHTGSVLCLQY  245 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEecccc----------------------------HHHHHhhhcCCCcEEeeec
Confidence            45679999985  55799999999999999875                            3466778999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecccCC
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHLS  506 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~---~~~~~~~~~  506 (670)
                      .  .+.+++||.|.+|++||+++++++.++-+|...|..+.|+  +.++++++.|+++.+||+.....   .+.+.||..
T Consensus       246 d--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA  321 (499)
T KOG0281|consen  246 D--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  321 (499)
T ss_pred             c--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence            7  6699999999999999999999999999999999999997  45899999999999999987653   356779999


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      .|+.+.|+  .+|+++++.|.+|++|++.++.+++++.+|...|-|+.+.  |+++++|+.|.+|++||+..|.++..+.
T Consensus       322 aVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe  397 (499)
T KOG0281|consen  322 AVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE  397 (499)
T ss_pred             heeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh
Confidence            99999984  5699999999999999999999999999999999998875  8999999999999999999999999999


Q ss_pred             CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       587 ~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      ||..-|.++.|.  ...+++|+.||+|+|||+..+.....      ...--++.++..|.+.|+.+.|...  .+++++.
T Consensus       398 GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra------~~~~~Cl~~lv~hsgRVFrLQFD~f--qIvsssH  467 (499)
T KOG0281|consen  398 GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA------PASTLCLRTLVEHSGRVFRLQFDEF--QIISSSH  467 (499)
T ss_pred             chHHhhhheeec--CceeeeccccceEEEEecccccCCcc------cccchHHHhhhhccceeEEEeecce--EEEeccC
Confidence            999999999995  66899999999999999988654211      1112345667778889999998643  3444444


Q ss_pred             C
Q 005913          667 S  667 (670)
Q Consensus       667 d  667 (670)
                      |
T Consensus       468 d  468 (499)
T KOG0281|consen  468 D  468 (499)
T ss_pred             C
Confidence            4

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-33  Score=278.22  Aligned_cols=292  Identities=22%  Similarity=0.365  Sum_probs=250.8

Q ss_pred             CCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcccee
Q 005913          336 SAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT  415 (670)
Q Consensus       336 ~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (670)
                      ...+|+....++..|.+.|+-+.||++|++||+++.|.+..||.+...                         ...+...
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-------------------------~~~kl~~  263 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-------------------------VHFKLKK  263 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-------------------------cceeeee
Confidence            345677777788999999999999999999999999999999997641                         2245678


Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      ++.+|..+|..+.||||.++|++|+.|..+.+||+.++.....|.. +...+.+++|.|||..|++|+.|+++..||++.
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG  343 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence            8999999999999999999999999999999999999998887763 468899999999999999999999999999975


Q ss_pred             CceeEEeccc-CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          495 IQPLRIMAGH-LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       495 ~~~~~~~~~~-~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                      .. .....+- ...|.+++..+||+++++.+.|..|++++..+........ ...+|+++++|.+|+++++.-.+..|++
T Consensus       344 n~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~L  421 (519)
T KOG0293|consen  344 NI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHL  421 (519)
T ss_pred             ch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence            43 3333322 2458999999999999999999999999988776665444 4578999999999999999999999999


Q ss_pred             EeCCCCeeeEEeeCCCc--ceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913          574 WDLASGRCVTPLMGHTS--CVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  650 (670)
Q Consensus       574 wDl~~~~~~~~~~~h~~--~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  650 (670)
                      ||+...+.+..+.||..  .|..-+|.- +..++++||.|+.|+||+..++.               ++..+++|...|.
T Consensus       422 WDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---------------ll~~LsGHs~~vN  486 (519)
T KOG0293|consen  422 WDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---------------LLAVLSGHSKTVN  486 (519)
T ss_pred             eecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---------------eeEeecCCcceee
Confidence            99998888999999974  344555654 55899999999999999998874               5778899999999


Q ss_pred             EEEEecCC-cEEEEeeCCCC
Q 005913          651 SLQFSRRN-LLFAAGALSKT  669 (670)
Q Consensus       651 ~l~fs~~~-~~La~gs~dgs  669 (670)
                      +|+|+|.+ .++|+|++||+
T Consensus       487 cVswNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  487 CVSWNPADPEMFASASDDGT  506 (519)
T ss_pred             EEecCCCCHHHhhccCCCCe
Confidence            99999976 67899999997

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.8e-32  Score=265.52  Aligned_cols=280  Identities=21%  Similarity=0.303  Sum_probs=243.7

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .+|..|...|.+++.+|+.+++|+|+.|-.-.||++.+                            ......+.+|...|
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~----------------------------ge~~~eltgHKDSV  109 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST----------------------------GEFAGELTGHKDSV  109 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC----------------------------CcceeEecCCCCce
Confidence            47899999999999999999999999999999999875                            23556788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      +++.|+.+|.+||+|..+|.|+||...++.....+......|.=+.|+|.++.|+.|+.||.+-+|.+.+....+.+.||
T Consensus       110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh  189 (399)
T KOG0296|consen  110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH  189 (399)
T ss_pred             EEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence            99999999999999999999999999999888877655566777899999999999999999999999998889999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec---------------------------------------
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---------------------------------------  545 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---------------------------------------  545 (670)
                      ..+++|-.|.|+|+.+++|..||+|++||+.+++++..+..                                       
T Consensus       190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence            99999999999999999999999999999999987765430                                       


Q ss_pred             ------------CCCCeEEEEEcC---CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913          546 ------------HRSMILSLAMSP---DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (670)
Q Consensus       546 ------------h~~~I~~l~~sp---~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D  610 (670)
                                  +...+.|+.+.|   .-.+.|+|+-||+|.|||+.+.+....+ .|..+|+.+.|-+ ..+|++++.|
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~  347 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACAN  347 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccC
Confidence                        111122223222   3346788999999999999887665544 5888899999998 7899999999


Q ss_pred             CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          611 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       611 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      |.|+.||.+++.               ++.++.+|.-+|.+++.+|+.++++++|.|++
T Consensus       348 g~v~~wDaRtG~---------------l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  348 GKVRQWDARTGQ---------------LKFTYTGHQMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             ceEEeeeccccc---------------eEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence            999999999974               46788999999999999999999999999975

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=284.74  Aligned_cols=288  Identities=22%  Similarity=0.376  Sum_probs=253.5

Q ss_pred             CCceeEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913          339 LPSVSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (670)
Q Consensus       339 ~ps~~~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (670)
                      +|....+++.+|..+|+++.|.| .+.+|++|+.|+.|+||++-.                           ....++++
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------------------------~~~~lrtf  254 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------------------------DRRCLRTF  254 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------Ccceehhh
Confidence            46666788999999999999999 899999999999999999864                           24578899


Q ss_pred             ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCc
Q 005913          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQ  496 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~  496 (670)
                      .||..+|.+++|+++|..++++|.|++|++||+++|+++..+.. ...+.|+.|.|++ +.|++|+.|+.|+.||+++++
T Consensus       255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k  333 (503)
T KOG0282|consen  255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK  333 (503)
T ss_pred             hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence            99999999999999999999999999999999999999998874 5578999999988 889999999999999999999


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                      .++.+..|.+.|..+.|-++|.++++.+.|++++||+.+.+-.+.... .+.....|+..+|++.++++-+.|+.|.++.
T Consensus       334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence            999999999999999999999999999999999999998876654432 2334567899999999999999999999999


Q ss_pred             CCCC---eeeEEeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913          576 LASG---RCVTPLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  650 (670)
Q Consensus       576 l~~~---~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  650 (670)
                      +...   ..-+.+.+|.  +.-..+.|||||.+|++|+.||.+.+||..+..               ++..+..|..++.
T Consensus       414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---------------l~~~lkah~~~ci  478 (503)
T KOG0282|consen  414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---------------LVSKLKAHDQPCI  478 (503)
T ss_pred             cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---------------hhhccccCCcceE
Confidence            7543   2334567886  455678999999999999999999999998853               5678889999999


Q ss_pred             EEEEecCC-cEEEEeeCCCC
Q 005913          651 SLQFSRRN-LLFAAGALSKT  669 (670)
Q Consensus       651 ~l~fs~~~-~~La~gs~dgs  669 (670)
                      .+.|+|.. ..+|+++.+|-
T Consensus       479 ~v~wHP~e~Skvat~~w~G~  498 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGL  498 (503)
T ss_pred             EEEecCCCcceeEecccCce
Confidence            99999975 57888888884

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-32  Score=289.47  Aligned_cols=280  Identities=24%  Similarity=0.423  Sum_probs=249.6

Q ss_pred             EeecCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          346 TFINTHNGLNCASI-SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       346 t~~~~~~~V~~l~f-s~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .+.+.++.|..++| .|+.++||+++..+.+|+|++.+.                             ....+.||+..|
T Consensus       318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-----------------------------~c~ii~GH~e~v  368 (775)
T KOG0319|consen  318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS-----------------------------YCQIIPGHTEAV  368 (775)
T ss_pred             hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC-----------------------------ceEEEeCchhhe
Confidence            35677888998887 578899999999999999987752                             233788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCCce--
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQP--  497 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~~~--  497 (670)
                      .++....+|.+|+|||.|.++++|.++.+.    ++....+|+..|.+++++.. ..+|+++|.|+++++|++...+.  
T Consensus       369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~  448 (775)
T KOG0319|consen  369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA  448 (775)
T ss_pred             eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence            999966678899999999999999885433    45567899999999999774 46799999999999999976221  


Q ss_pred             ---e----EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913          498 ---L----RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       498 ---~----~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                         .    .....|..+|+|++.+|+...++|||.|++.+||++.......++.+|...|.|+.|+|..+.++|++.|++
T Consensus       449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T  528 (775)
T KOG0319|consen  449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT  528 (775)
T ss_pred             ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence               1    123479999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  650 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  650 (670)
                      |+||.+.+..|++++.||+..|..+.|-.+|..|+|++.||-|++|+++++.               ++.++..|...|+
T Consensus       529 vKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e---------------C~~tlD~H~DrvW  593 (775)
T KOG0319|consen  529 VKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE---------------CEMTLDAHNDRVW  593 (775)
T ss_pred             EEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh---------------hhhhhhhccceeE
Confidence            9999999999999999999999999999999999999999999999999975               5678899999999


Q ss_pred             EEEEecCCcEEEEeeCCCC
Q 005913          651 SLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       651 ~l~fs~~~~~La~gs~dgs  669 (670)
                      +++.+|...++++|+.||.
T Consensus       594 aL~~~~~~~~~~tgg~Dg~  612 (775)
T KOG0319|consen  594 ALSVSPLLDMFVTGGGDGR  612 (775)
T ss_pred             EEeecCccceeEecCCCeE
Confidence            9999999999999999984

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.6e-31  Score=269.81  Aligned_cols=281  Identities=24%  Similarity=0.369  Sum_probs=233.4

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee---eecCc
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL---YQGHS  421 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~  421 (670)
                      .++..|..-|.|+.|||||.++|+.+.||.|.|||=.+..                            .+..   -.+|.
T Consensus       184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----------------------------~vg~l~~~~aHk  235 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----------------------------KVGELEDSDAHK  235 (603)
T ss_pred             ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----------------------------EEEEecCCCCcc
Confidence            4566777889999999999999999999999999965422                            2222   23899


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCc---cEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~---~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      +.|++++|+||+..++++|.|.+++|||+.+..++.++.....   .-..+.|-  +..|++.+.+|++.+++.....++
T Consensus       236 GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~  313 (603)
T KOG0318|consen  236 GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVL  313 (603)
T ss_pred             ccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChh
Confidence            9999999999999999999999999999999988887764322   23345565  668999999999999999999999


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-------------------------------E----
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-------------------------------F----  543 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-------------------------------~----  543 (670)
                      ..+.||...|+++..+|++.+|++|+.||.|.-||..+|..-+.                               +    
T Consensus       314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~  393 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKD  393 (603)
T ss_pred             heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence            99999999999999999999999999999999999865532111                               0    


Q ss_pred             --------------------------------------ecC--------CCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          544 --------------------------------------IGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       544 --------------------------------------~~h--------~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                                                            ..+        .-...+++++|++..++.|+.||.|++|.+.
T Consensus       394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~  473 (603)
T KOG0318|consen  394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS  473 (603)
T ss_pred             CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEec
Confidence                                                  001        1124578999999999999999999999998


Q ss_pred             CCeee--EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913          578 SGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS  655 (670)
Q Consensus       578 ~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs  655 (670)
                      .+...  .....|.++|++++||||+.+||+|...+.|.+||+.+....              ...+.-|...|.+++|+
T Consensus       474 g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~--------------~~~w~FHtakI~~~aWs  539 (603)
T KOG0318|consen  474 GDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK--------------TNRWAFHTAKINCVAWS  539 (603)
T ss_pred             CCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee--------------cceeeeeeeeEEEEEeC
Confidence            76533  345689999999999999999999999999999999886531              23444578889999999


Q ss_pred             cCCcEEEEeeCCCC
Q 005913          656 RRNLLFAAGALSKT  669 (670)
Q Consensus       656 ~~~~~La~gs~dgs  669 (670)
                      |++.++|+|+.|-+
T Consensus       540 P~n~~vATGSlDt~  553 (603)
T KOG0318|consen  540 PNNKLVATGSLDTN  553 (603)
T ss_pred             CCceEEEeccccce
Confidence            99999999998853

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-32  Score=279.63  Aligned_cols=281  Identities=23%  Similarity=0.378  Sum_probs=252.1

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      ++..+...|-|+.|+|...+++++-.+|.|.||+.++.                            ..++.+.-..-||.
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq----------------------------tmVksfeV~~~PvR   59 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ----------------------------TMVKSFEVSEVPVR   59 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc----------------------------eeeeeeeecccchh
Confidence            34557788999999999999999999999999998862                            23344555667899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEeccc
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGH  504 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~  504 (670)
                      +..|-+..+++++|+.|..|++|+.++++.+..+..|..-|.+++.+|...+++++|.|-+|++||.+.. .+.+++.||
T Consensus        60 a~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH  139 (794)
T KOG0276|consen   60 AAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH  139 (794)
T ss_pred             hheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864 577899999


Q ss_pred             CCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC--CEEEEEECCCeEEEEeCCCCee
Q 005913          505 LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG--RYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       505 ~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g--~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      ..-|.+++|+| |.+.+++++-|++|++|.+.+..+..++.+|...|.|+.+-+-|  .+|++|++|..|+|||..+..|
T Consensus       140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C  219 (794)
T KOG0276|consen  140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC  219 (794)
T ss_pred             ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence            99999999998 56799999999999999999999999999999999999998854  5999999999999999999999


Q ss_pred             eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  661 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L  661 (670)
                      +.++.||...|..+.|+|.-.+++|||.||+|+||+-.+-.               +..++.-.-..|.|++-.+.+..+
T Consensus       220 V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~---------------lE~tLn~gleRvW~I~~~k~~~~i  284 (794)
T KOG0276|consen  220 VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK---------------LEKTLNYGLERVWCIAAHKGDGKI  284 (794)
T ss_pred             HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee---------------hhhhhhcCCceEEEEeecCCCCeE
Confidence            99999999999999999999999999999999999977643               234455556678888888888888


Q ss_pred             EEeeCCCC
Q 005913          662 AAGALSKT  669 (670)
Q Consensus       662 a~gs~dgs  669 (670)
                      +.|.+.|+
T Consensus       285 ~vG~Deg~  292 (794)
T KOG0276|consen  285 AVGFDEGS  292 (794)
T ss_pred             EEeccCCc
Confidence            88887765

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.8e-32  Score=267.16  Aligned_cols=242  Identities=26%  Similarity=0.501  Sum_probs=226.8

Q ss_pred             ccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEE
Q 005913          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (670)
Q Consensus       411 ~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lw  490 (670)
                      .+..+.+.+|.+.|.|+++.|.+.++++|+.|++|+|||+.+++...++.||-..|..+++|+...|+++++.|+.|+.|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       491 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                      |++..+.++.+.||.+.|.|++.||.-..|++|+.|.++|+||+++...+..+.+|..+|.++.+.|-...+++|+.|++
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t  300 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST  300 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  650 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  650 (670)
                      |++||++.|+.+..+..|...|.+++.+|....+|+++.| .|+-|++..+..               +..+..|...|.
T Consensus       301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f---------------~~nlsgh~~iin  364 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF---------------LQNLSGHNAIIN  364 (460)
T ss_pred             EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccch---------------hhccccccceee
Confidence            9999999999999999999999999999999999999988 589999988653               445778888999


Q ss_pred             EEEEecCCcEEEEeeCCCC
Q 005913          651 SLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       651 ~l~fs~~~~~La~gs~dgs  669 (670)
                      +++...|| ++++|++.|+
T Consensus       365 tl~~nsD~-v~~~G~dng~  382 (460)
T KOG0285|consen  365 TLSVNSDG-VLVSGGDNGS  382 (460)
T ss_pred             eeeeccCc-eEEEcCCceE
Confidence            99999888 5666777664

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-31  Score=291.86  Aligned_cols=250  Identities=32%  Similarity=0.615  Sum_probs=228.8

Q ss_pred             eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ...++.+|...|++++|+||++++++|+.|++|+|||+..                           ....++++.+|..
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---------------------------~~~~~~~l~gH~~  247 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---------------------------DGRNLKTLKGHST  247 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC---------------------------CCeEEEEecCCCC
Confidence            3445577889999999999999999999999999999842                           1356788899999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc--eeEE
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRI  500 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~--~~~~  500 (670)
                      .|++++|+|+++++++|+.|++|+|||+++++++..+.+|..+|.+++|++++++|++++.|+.|++||+.++.  +...
T Consensus       248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~  327 (456)
T KOG0266|consen  248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL  327 (456)
T ss_pred             ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998  5677


Q ss_pred             ecccCCC--eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC---eEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          501 MAGHLSD--VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM---ILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       501 ~~~~~~~--v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~---I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                      +.++...  +.++.|+|++.++++++.|+.+++||++.+.++..+.+|...   +.+...++.|.++++|+.|+.|.+||
T Consensus       328 ~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  328 LSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD  407 (456)
T ss_pred             ccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence            7777666  999999999999999999999999999999999999999874   44455678999999999999999999


Q ss_pred             CCCCeeeEEeeCC-CcceEEEEEcCCCCEEEEEE--CCCcEEEEeCC
Q 005913          576 LASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGS--ADCTVKLWDVT  619 (670)
Q Consensus       576 l~~~~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~  619 (670)
                      +.++..+..+.+| ...+..+.|+|..+++++++  .|+.+++|...
T Consensus       408 ~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  408 SSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999999999 89999999999999999998  78999999754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-31  Score=285.44  Aligned_cols=276  Identities=25%  Similarity=0.446  Sum_probs=248.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ....|-.++|+|...++.++-..|.|++||..-                            ...+..+..|.++|.+++|
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM----------------------------~tli~rFdeHdGpVRgv~F   59 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM----------------------------GTLIDRFDEHDGPVRGVDF   59 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhh----------------------------hhHHhhhhccCCccceeee
Confidence            345789999999999999999999999999863                            2355668899999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCee
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD  509 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~  509 (670)
                      +|.+.+++||+.|-.|++|+..+.+++.++.||-.-|..+.|++.-.+++++|.|.+|+||+..+.+++..+.||...|.
T Consensus        60 H~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM  139 (1202)
T KOG0292|consen   60 HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM  139 (1202)
T ss_pred             cCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCC--------C-------------------c--EEEEEecCCCCeEEEEEcCCCC
Q 005913          510 CVRWHINCNYIATGSSDKTVRLWDVSS--------G-------------------E--CVRIFIGHRSMILSLAMSPDGR  560 (670)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~--------~-------------------~--~~~~~~~h~~~I~~l~~sp~g~  560 (670)
                      |..|||....++++|-|.+||+||+..        +                   .  ....+.||...|.-++|+|.-.
T Consensus       140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP  219 (1202)
T ss_pred             eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence            999999999999999999999999842        1                   0  1235679999999999999999


Q ss_pred             EEEEEECCCeEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          561 YMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      .|++|++|..|++|.+...+  .+-++++|.+.|.++-|+|..++++|.|.|++|+|||+...+.               
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~---------------  284 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS---------------  284 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc---------------
Confidence            99999999999999987543  4567889999999999999999999999999999999988653               


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      +.++.......+.++-+|...++|+|-+.|
T Consensus       285 v~tfrrendRFW~laahP~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  285 VQTFRRENDRFWILAAHPELNLFAAGHDSG  314 (1202)
T ss_pred             eeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence            456666667789999999999999887765

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=283.33  Aligned_cols=254  Identities=27%  Similarity=0.528  Sum_probs=227.3

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      +..+.+|.+.|.++....+|-+||+|+.|.++++|.++...                        .....+....||++.
T Consensus       358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------------~~~~~~a~~~gH~~s  413 (775)
T KOG0319|consen  358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------------SKSLCVAQANGHTNS  413 (775)
T ss_pred             eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------------chhhhhhhhcccccc
Confidence            33567888999999977788999999999999999984311                        112345566799999


Q ss_pred             EEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce-----eE----EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          424 VYSASFSPLG-DFILSSSADTTIRLWSTKLNAN-----LV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       424 V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~-----~~----~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      |.+++++..+ .+|+++|.|+++++|++...+.     ..    ....|...|.+++.+|+...|||||.|+++++|+++
T Consensus       414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE  493 (775)
T ss_pred             cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence            9999998765 4899999999999999976221     11    234699999999999999999999999999999999


Q ss_pred             CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                      +.....++.||...|.||.|+|+.+.++|+|.|++|+||.+.+..|+.+|.||...|..+.|-.+|..|++++.||.|++
T Consensus       494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl  573 (775)
T KOG0319|consen  494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL  573 (775)
T ss_pred             CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      |++.++.|+.++..|...|++++.++.+.+++||+.||.|.+|.=.+.
T Consensus       574 Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  574 WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            999999999999999999999999999999999999999999975543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5e-30  Score=260.89  Aligned_cols=260  Identities=37%  Similarity=0.642  Sum_probs=232.9

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+..... ....+..+...+.++.|+|+++++++++.+|.|++|++...                         
T Consensus        30 ~g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------------------------   83 (289)
T cd00200          30 DGTIKVWDLETGE-LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-------------------------   83 (289)
T ss_pred             CcEEEEEEeeCCC-cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------------------------
Confidence            3466677554332 34456677788999999999999999999999999998741                         


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                         .....+..|...|.++.|++++.++++++.||.|++|++.+++....+..|...|.++.|+|++.++++++.|+.++
T Consensus        84 ---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          84 ---ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             ---cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence               23445668888999999999988999888899999999998888888889999999999999999998888899999


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                      +||+++++.+..+..|...+.++.|+|+++.+++++.++.|++||+++++.+..+..|...+.+++|+|++.++++++.|
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence            99999999999999998899999999999999999999999999999999998888899999999999999899988889


Q ss_pred             CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      |.|++||+.+++.+..+..|...|.+++|++++.+|++++.||.|++|+
T Consensus       241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999999999999999999999999999999999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.7e-30  Score=261.11  Aligned_cols=309  Identities=25%  Similarity=0.366  Sum_probs=237.2

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcccccc--CCCC----CCCCCCCccccC-CC-----------
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSS--GLQG----ENDTTPREDIIG-PN-----------  408 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~--~~~~----~~~~~~~~~~~~-~~-----------  408 (670)
                      +.+|...++-..|||.|-|+|+|...|.||||+...........  .+.+    .........+.. ..           
T Consensus        55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~  134 (603)
T KOG0318|consen   55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW  134 (603)
T ss_pred             eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence            45666779999999999999999999999999987532211111  0110    001111111110 01           


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v  487 (670)
                      ..+...-.+.||+..|.++.|-|... .+++|+.|++|.+|.=.-.+-...+..|..-|.|+.|+|||..|++++.||++
T Consensus       135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki  214 (603)
T KOG0318|consen  135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI  214 (603)
T ss_pred             cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence            12234455789999999999999877 58999999999999976666677788899999999999999999999999999


Q ss_pred             EEEECCCCceeEEec---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE---------------------
Q 005913          488 RIWSMDRIQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---------------------  543 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~---------------------  543 (670)
                      .+||-.+++.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+.++++++                     
T Consensus       215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI  294 (603)
T KOG0318|consen  215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI  294 (603)
T ss_pred             EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence            999999999999988   89999999999999999999999999999999877665443                     


Q ss_pred             ----------------------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe-eCCCcc---------
Q 005913          544 ----------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL-MGHTSC---------  591 (670)
Q Consensus       544 ----------------------~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~-~~h~~~---------  591 (670)
                                            .+|...|+++..+|++.+|++|+.||.|.-||..+|..-... .+|...         
T Consensus       295 tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~  374 (603)
T KOG0318|consen  295 TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES  374 (603)
T ss_pred             EEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence                                  389999999999999999999999999999998765322111 112222         


Q ss_pred             -----------------------------------------------------------------------eEEEEEcCC
Q 005913          592 -----------------------------------------------------------------------VWTLAYSCE  600 (670)
Q Consensus       592 -----------------------------------------------------------------------V~sl~~s~~  600 (670)
                                                                                             ..+++++|+
T Consensus       375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~  454 (603)
T KOG0318|consen  375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD  454 (603)
T ss_pred             CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence                                                                                   345667777


Q ss_pred             CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          601 GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       601 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      +..++.|+.||.|+||.+......             .......|..+|++++|||++.+||+|...+
T Consensus       455 ~~~vaVGG~Dgkvhvysl~g~~l~-------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~r  509 (603)
T KOG0318|consen  455 GSEVAVGGQDGKVHVYSLSGDELK-------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASR  509 (603)
T ss_pred             CCEEEEecccceEEEEEecCCccc-------------ceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence            777777777777777777664321             1223456888999999999999999997654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.2e-31  Score=283.97  Aligned_cols=270  Identities=24%  Similarity=0.360  Sum_probs=214.1

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCC------------------CCC-----------CCCC
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL------------------QGE-----------NDTT  399 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~------------------~~~-----------~~~~  399 (670)
                      .|.+.|+|+.||+||+|||+|+.||.|+||.+............                  ...           ....
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            67889999999999999999999999999998752110000000                  000           0000


Q ss_pred             -CC--ccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CC
Q 005913          400 -PR--EDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QG  475 (670)
Q Consensus       400 -~~--~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g  475 (670)
                       ..  .......-....+..+.||.+.|..++||. +++|+++|.|.|||||++....|+.+|. |..-|+||+|+| |.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence             00  000011112456677899999999999995 5689999999999999999999999988 899999999999 88


Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--C------C
Q 005913          476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H------R  547 (670)
Q Consensus       476 ~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h------~  547 (670)
                      +||++|+-||.||||++...+.+.....+ .-|++++|.|+|++.++|+-+|.+++|+....+.+..+.-  |      .
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            99999999999999999887776665544 7899999999999999999999999999987776654431  1      2


Q ss_pred             CCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCeeeEEeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          548 SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       548 ~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      ..|+.+.|.|. ...+++.+.|..|+|+|.+...++..++++.  ..-....|+.||++|++++.|..|+||++...
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            27999999984 3357778889999999999989998888754  33456789999999999999999999998543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=7.6e-30  Score=241.15  Aligned_cols=235  Identities=31%  Similarity=0.567  Sum_probs=206.4

Q ss_pred             ceeeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC---ceeEEe-eCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913          413 SYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLN---ANLVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~---~~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~dg~v  487 (670)
                      ....+.+|.+.|..++|+|- |..|++|+.|..|++|+...+   .+...+ .+|...|.+++|+|.|++|++||.|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            55678899999999999998 889999999999999999852   333333 3699999999999999999999999999


Q ss_pred             EEEECCC--CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC---cEEEEEecCCCCeEEEEEcCCCCEE
Q 005913          488 RIWSMDR--IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPDGRYM  562 (670)
Q Consensus       488 ~lwd~~~--~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~sp~g~~l  562 (670)
                      .||.-..  .+++..+.||.+.|.|++|+++|++||+++.|+.|.||.+..+   .+...+++|...|-.+.|+|...+|
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence            9997653  4678899999999999999999999999999999999998744   5788899999999999999999999


Q ss_pred             EEEECCCeEEEEeCC---CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccc
Q 005913          563 ASGDEDGTIMMWDLA---SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL  639 (670)
Q Consensus       563 ~sg~~dg~I~iwDl~---~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  639 (670)
                      ++++.|.+|++|+-.   ...++.++.+|.+.|++++|++.|..|++++.|++|+||.....                  
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------------------  227 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------------------  227 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC------------------
Confidence            999999999999866   45789999999999999999999999999999999999986532                  


Q ss_pred             cccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          640 KTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       640 ~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                       .-..|..+++.+.|.  +-.+|+|+.|+
T Consensus       228 -~~~~~sr~~Y~v~W~--~~~IaS~ggD~  253 (312)
T KOG0645|consen  228 -LSGMHSRALYDVPWD--NGVIASGGGDD  253 (312)
T ss_pred             -cchhcccceEeeeec--ccceEeccCCC
Confidence             112466789999999  55778887765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=3e-30  Score=252.97  Aligned_cols=260  Identities=20%  Similarity=0.300  Sum_probs=220.1

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      .++.++|..+... ..+.+.+|...|+|+.||.||.+||+|..+|.|+||...+..                        
T Consensus        85 DD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~------------------------  139 (399)
T KOG0296|consen   85 DDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG------------------------  139 (399)
T ss_pred             CceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc------------------------
Confidence            4567888776665 566889999999999999999999999999999999988632                        


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                          ....+...-..+--+.|+|-+..|+.|+.||.+..|.+......+.+.||+.++++-.|.|+|+.++++..||+|+
T Consensus       140 ----~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  140 ----EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             ----eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence                2222334456777899999999999999999999999998888999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecc---------------------------------------------------cCCCeeEEEEcC--
Q 005913          489 IWSMDRIQPLRIMAG---------------------------------------------------HLSDVDCVRWHI--  515 (670)
Q Consensus       489 lwd~~~~~~~~~~~~---------------------------------------------------~~~~v~~v~~~p--  515 (670)
                      +|+..+++++..+.+                                                   +...+.|+.+.|  
T Consensus       216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s  295 (399)
T KOG0296|consen  216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS  295 (399)
T ss_pred             EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence            999998887765541                                                   011122222222  


Q ss_pred             -CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEE
Q 005913          516 -NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT  594 (670)
Q Consensus       516 -~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~s  594 (670)
                       .=.+.|+|+-||+|.|||+...+... ...|..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.+|...|..
T Consensus       296 s~lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~  373 (399)
T KOG0296|consen  296 SKLPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD  373 (399)
T ss_pred             cccchhhcccccceEEEEecccchhhe-eccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence             22457889999999999987666544 446888999999998 789999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          595 LAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       595 l~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      ++++|+.++++|+|.|++.+||++.
T Consensus       374 f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  374 FALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999999999999874

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=2.9e-30  Score=242.63  Aligned_cols=279  Identities=22%  Similarity=0.382  Sum_probs=243.4

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +.+|...|.+++|+-+|..||+|+.|+++.+|++....                          ...-....+|.+.|-.
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--------------------------~~~~~~~~gh~~svdq   69 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--------------------------FRKELVYRGHTDSVDQ   69 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--------------------------hhhhhcccCCCcchhh
Confidence            45667789999999999999999999999999988531                          1122345689999999


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913          427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       427 l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      ++|+|.. +.+++++.|.+|++||++.++++.........| -+.|+|+|.++++++.|..|.+.|.++.+...... ..
T Consensus        70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~  147 (313)
T KOG1407|consen   70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FK  147 (313)
T ss_pred             heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cc
Confidence            9999854 589999999999999999999998887655555 48899999999999999999999999887766554 44


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      ..+.-++|+-+++.++..+..|+|.|.....-+++..+..|.....||.|+|+|+++|+|+.|-.+.+||+..--|+..+
T Consensus       148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i  227 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI  227 (313)
T ss_pred             ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence            56788899977777777777899999999999999999999999999999999999999999999999999998899999


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      ..+.-+|..++||.+|++||+||.|..|-|=++.++.+..+.                ...++-+.|+|+|...+||.++
T Consensus       228 sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----------------~~~~~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  228 SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----------------PCEGPTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----------------eccCCceeEEecCCCceeeEEe
Confidence            999999999999999999999999999999999998764322                3567899999999999999998


Q ss_pred             CCCC
Q 005913          666 LSKT  669 (670)
Q Consensus       666 ~dgs  669 (670)
                      .|+.
T Consensus       292 ddk~  295 (313)
T KOG1407|consen  292 DDKD  295 (313)
T ss_pred             cCCC
Confidence            8763

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=5.5e-32  Score=262.65  Aligned_cols=258  Identities=27%  Similarity=0.567  Sum_probs=226.2

Q ss_pred             HHHcc-cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcc
Q 005913          325 LEDLR-NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED  403 (670)
Q Consensus       325 ~~~~~-~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~  403 (670)
                      +..++ +.+.+|+... -.|.+.+.+|.+.|.|+.|.  .+.+++|++|++|+|||+++                     
T Consensus       211 VSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t---------------------  266 (499)
T KOG0281|consen  211 VSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT---------------------  266 (499)
T ss_pred             hcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC---------------------
Confidence            44444 3678887543 34667889999999999996  45999999999999999986                     


Q ss_pred             ccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEecCCCEEEE
Q 005913          404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFAS  480 (670)
Q Consensus       404 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s  480 (670)
                             +..+.++.+|...|..+.|+  ..+++++|.|.+|.+||+.....   ...+.||...|..+.|+  .+|+++
T Consensus       267 -------ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVs  335 (499)
T KOG0281|consen  267 -------GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVS  335 (499)
T ss_pred             -------CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEE
Confidence                   45667788999999999998  67999999999999999987653   34577999999999996  559999


Q ss_pred             EECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 005913          481 SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR  560 (670)
Q Consensus       481 ~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~  560 (670)
                      ++.|++|++|++.+.+.++++.+|...|.|+.+  .++++++|++|.+|++||+..|.+++.+.||..-|.|+.|.  .+
T Consensus       336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~k  411 (499)
T KOG0281|consen  336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NK  411 (499)
T ss_pred             ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cc
Confidence            999999999999999999999999999999987  78999999999999999999999999999999999999996  67


Q ss_pred             EEEEEECCCeEEEEeCCCCe---------eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          561 YMASGDEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~---------~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      .+++|+.||+|++||+.++.         ++..+..|++.|..+.|  |...+++++.|.+|-|||+..+.+
T Consensus       412 rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  412 RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence            89999999999999998763         44556679999999999  466899999999999999988654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3e-30  Score=267.48  Aligned_cols=259  Identities=25%  Similarity=0.450  Sum_probs=232.6

Q ss_pred             cccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      +...+++|+-..... ...|.-..-+|.++.|-...+++++|+.|..|+||+.++                         
T Consensus        33 ynG~V~IWnyetqtm-VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-------------------------   86 (794)
T KOG0276|consen   33 YNGDVQIWNYETQTM-VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-------------------------   86 (794)
T ss_pred             ecCeeEEEeccccee-eeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-------------------------
Confidence            456788887544322 224555667899999999999999999999999999986                         


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeeCCCccEeEEEEec-CCCEEEEEECCC
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR  485 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg  485 (670)
                         ...+..+..|+.-|.|++.+|...+++++|.|-+|++||.+. ..+.++|.||..-|.+++|+| |.+.|+++|-|+
T Consensus        87 ---~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   87 ---GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ---ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence               457788999999999999999999999999999999999975 467889999999999999999 788999999999


Q ss_pred             cEEEEECCCCceeEEecccCCCeeEEEEcCCC--CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~  563 (670)
                      +|++|.+.+..+..++.+|...|+|+.|-+-|  .||++|+.|.+|++||.++..|++++.||...|.++.|+|.-..++
T Consensus       164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii  243 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII  243 (794)
T ss_pred             cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence            99999999999999999999999999998644  6999999999999999999999999999999999999999999999


Q ss_pred             EEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (670)
Q Consensus       564 sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i  615 (670)
                      +|+.||+++||.-.+-+....+.-.-..|++++-.+.++.++.|...|.|.|
T Consensus       244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            9999999999999998888888777789999999998888888888777643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3.2e-31  Score=255.06  Aligned_cols=286  Identities=21%  Similarity=0.297  Sum_probs=246.2

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      ++..+.+-|..|||||++|++|+.||.|.+|+..+.+...-.                    .......+.-+..+|.|+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL--------------------kYQAqd~fMMmd~aVlci  269 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL--------------------KYQAQDNFMMMDDAVLCI  269 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh--------------------hhhhhcceeecccceEEE
Confidence            345667899999999999999999999999998764432210                    111223355688999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS  506 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~  506 (670)
                      +||.|...|++|+.||.|++|.+.++.|+..+. .|...|+|+.|+.|+..+++++.|.++++--+..++++..+.||.+
T Consensus       270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS  349 (508)
T KOG0275|consen  270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS  349 (508)
T ss_pred             eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc
Confidence            999999999999999999999999999999987 7999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--CCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      .|+...|.++|++++++++||+|++|+..+..|+.+|..  ...+|.++..-| +...+++|...++|+|.++ .|+.+.
T Consensus       350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVr  428 (508)
T KOG0275|consen  350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVR  428 (508)
T ss_pred             cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEe
Confidence            999999999999999999999999999999999998874  345788888777 4568888889999999997 577777


Q ss_pred             EeeCC---CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913          584 PLMGH---TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL  660 (670)
Q Consensus       584 ~~~~h---~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~  660 (670)
                      .+...   .+...+++.||.|.++.+.+.|+.++.|.+.++..               -.+++.|...|..++-+|...+
T Consensus       429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L---------------E~tl~VhEkdvIGl~HHPHqNl  493 (508)
T KOG0275|consen  429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL---------------ERTLPVHEKDVIGLTHHPHQNL  493 (508)
T ss_pred             eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce---------------eeeeecccccccccccCcccch
Confidence            77532   35667788999999999999999999999988753               3466677778889999999999


Q ss_pred             EEEeeCCCC
Q 005913          661 FAAGALSKT  669 (670)
Q Consensus       661 La~gs~dgs  669 (670)
                      ||+-+.||.
T Consensus       494 lAsYsEDgl  502 (508)
T KOG0275|consen  494 LASYSEDGL  502 (508)
T ss_pred             hhhhcccch
Confidence            999888874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=4.8e-30  Score=252.54  Aligned_cols=274  Identities=28%  Similarity=0.502  Sum_probs=235.4

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      +-|.+-|.++...  +.++++|+.||.++||+..+                             .......||+++|.++
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-----------------------------k~~~~~~Ght~~ik~v  150 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-----------------------------KSIKTIVGHTGPIKSV  150 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCC-----------------------------ceEEEEecCCcceeee
Confidence            3456678888877  78999999999999999763                             5667889999999999


Q ss_pred             EEcCCCC---EEEEEeCCCeEEEEeCCCCce----eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC-------
Q 005913          428 SFSPLGD---FILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-------  493 (670)
Q Consensus       428 ~~sp~~~---~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-------  493 (670)
                      +|.-.+.   .++++|.|.++++|.++.+..    +...+||..+|-++...++|..|++|+.|.++.+|+..       
T Consensus       151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~  230 (423)
T KOG0313|consen  151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDEL  230 (423)
T ss_pred             EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccc
Confidence            9865444   599999999999999887654    34456999999999999999999999999999999932       


Q ss_pred             ------------------CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913          494 ------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (670)
Q Consensus       494 ------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~  555 (670)
                                        +..|+..+.||...|.+|.|++ ...+++++.|.+|+.||+.++.++..+.+ ...+.|+..
T Consensus       231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~  308 (423)
T KOG0313|consen  231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISY  308 (423)
T ss_pred             cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeec
Confidence                              2346778899999999999987 67899999999999999999999988765 467999999


Q ss_pred             cCCCCEEEEEECCCeEEEEeCCCCe---eeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcccccccccc
Q 005913          556 SPDGRYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKS  631 (670)
Q Consensus       556 sp~g~~l~sg~~dg~I~iwDl~~~~---~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~  631 (670)
                      +|..++|++|+.|..|++||.+++.   ...++.+|.+.|.++.|+|. ..+|++|+.||++++||+++..         
T Consensus       309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---------  379 (423)
T KOG0313|consen  309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---------  379 (423)
T ss_pred             ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---------
Confidence            9999999999999999999998763   45678899999999999995 4579999999999999999864         


Q ss_pred             CCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          632 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       632 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                           .+++.+.+|...|.++.|...+ ++++|+.|.+
T Consensus       380 -----~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~  411 (423)
T KOG0313|consen  380 -----APLYDIAGHNDKVLSVDWNEGG-LIVSGGADNK  411 (423)
T ss_pred             -----CcceeeccCCceEEEEeccCCc-eEEeccCcce
Confidence                 2477888999999999998654 6788888764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=5.8e-30  Score=282.21  Aligned_cols=294  Identities=23%  Similarity=0.402  Sum_probs=244.3

Q ss_pred             EeecCC-CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          346 TFINTH-NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       346 t~~~~~-~~V~~l~fs~d~~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ++.+|+ ..|.+++.+|||..+|+|+  .||.++||+..........          .+      ............|.+
T Consensus         7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------~~------~~l~k~l~~m~~h~~   70 (942)
T KOG0973|consen    7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------KN------ENLPKHLCTMDDHDG   70 (942)
T ss_pred             cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhh----------hh------cccchhheeeccccC
Confidence            345554 4599999999999999999  8999999998742111000          00      002345667788999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------------------CceeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKL------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~------------------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d  484 (670)
                      .|+|+.|+|||.+||+||.|+.|.||....                  ++++..+.+|...|.+++|+|++.++++++.|
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D  150 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD  150 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence            999999999999999999999999998762                  23567788999999999999999999999999


Q ss_pred             CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC------CCeEEEEEcCC
Q 005913          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------SMILSLAMSPD  558 (670)
Q Consensus       485 g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------~~I~~l~~sp~  558 (670)
                      ++|.+|+..+.+.+..+.+|.+.|..+.|.|-|+||++-+.|++|++|++.+......+..+-      ..+..+.||||
T Consensus       151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD  230 (942)
T KOG0973|consen  151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD  230 (942)
T ss_pred             ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence            999999999999999999999999999999999999999999999999988877777665543      34788999999


Q ss_pred             CCEEEEEE----CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcC------CC-------C----EEEEEECCCcEEEEe
Q 005913          559 GRYMASGD----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC------EG-------S----LLASGSADCTVKLWD  617 (670)
Q Consensus       559 g~~l~sg~----~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~------~g-------~----~l~sgs~Dg~I~iwd  617 (670)
                      |.+|++..    .-..+.|.+-.+++.-..+-||.+++.++.|+|      ..       +    .+|+|+.|++|.||.
T Consensus       231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence            99999853    335688999888888889999999999999998      11       1    789999999999999


Q ss_pred             CCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          618 VTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .....+.              +-...-...+|..++|+|||..|.++|.||+
T Consensus       311 T~~~RPl--------------~vi~~lf~~SI~DmsWspdG~~LfacS~DGt  348 (942)
T KOG0973|consen  311 TALPRPL--------------FVIHNLFNKSIVDMSWSPDGFSLFACSLDGT  348 (942)
T ss_pred             cCCCCch--------------hhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence            8665432              1222334568999999999999999999997

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-30  Score=242.81  Aligned_cols=261  Identities=26%  Similarity=0.438  Sum_probs=224.2

Q ss_pred             ceecCCC-CCCceeEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          331 RVHLSSA-ALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       331 ~~~l~~~-~~ps~~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ++++-.. ..+.+.........+++..++||++ .+.+++++.||+++|||+...                         
T Consensus        39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-------------------------   93 (311)
T KOG0277|consen   39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-------------------------   93 (311)
T ss_pred             eEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-------------------------
Confidence            4444333 4567777777888899999999986 677889999999999996531                         


Q ss_pred             CCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCc
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT  486 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~  486 (670)
                        ..++..++.|...|+++.|++.. ..++++|.|++|++|+......+.++.+|+..|....|+| .+..|+++|.|++
T Consensus        94 --s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   94 --SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             --CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence              23567788999999999999855 4678889999999999999999999999999999999999 6789999999999


Q ss_pred             EEEEECCCCceeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCC-CCEEE
Q 005913          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMA  563 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~-g~~l~  563 (670)
                      +++||++..-....+..|...+.|+.|+. +.+.++||+.|+.||.||+++- .++..+.+|.-.|+.++|||. ...|+
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa  251 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA  251 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence            99999987655555888999999999985 6788999999999999999964 467788999999999999995 45899


Q ss_pred             EEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeC
Q 005913          564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       564 sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~  618 (670)
                      +++.|-+++|||...+ ..+.+...|+..|..+.||+ ++.++|+++.|+.+.||+-
T Consensus       252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999999999999854 45566678999999999998 6779999999999999983

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=9.5e-30  Score=268.83  Aligned_cols=280  Identities=20%  Similarity=0.409  Sum_probs=249.4

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      -+++.+|...|.+++||.|...+++| ..+.|+||+..+..                            ..+++.  .+-
T Consensus       366 ~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~k----------------------------ciRTi~--~~y  414 (888)
T KOG0306|consen  366 NIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLK----------------------------CIRTIT--CGY  414 (888)
T ss_pred             eeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcc----------------------------eeEEec--ccc
Confidence            47888999999999999999888888 67789999988633                            223332  247


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-----Ccee
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQPL  498 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-----~~~~  498 (670)
                      +.+..|.|.++++++|...|.+.+||+.+...+..++.|.+.||+++.+||+..+++||.|.+|++||..-     +...
T Consensus       415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~  494 (888)
T KOG0306|consen  415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK  494 (888)
T ss_pred             EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999741     1111


Q ss_pred             EEec-------ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          499 RIMA-------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       499 ~~~~-------~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                      +.+.       .-...|.|++++|||++|+++--|.+|.+|-+.+-+..-.+.||.-||.|+.+|||++.++||+.|..|
T Consensus       495 k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnV  574 (888)
T KOG0306|consen  495 KVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNV  574 (888)
T ss_pred             eeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCce
Confidence            1111       234789999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             EEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913          572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS  651 (670)
Q Consensus       572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  651 (670)
                      +||-+.-|.|-+.+.+|...|.++.|-|+...+.++|.|+.|+-||-..-               ..+..+++|...|+|
T Consensus       575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF---------------e~iq~L~~H~~ev~c  639 (888)
T KOG0306|consen  575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF---------------EEIQKLDGHHSEVWC  639 (888)
T ss_pred             EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh---------------hhheeeccchheeee
Confidence            99999999999999999999999999999999999999999999997664               357788999999999


Q ss_pred             EEEecCCcEEEEeeCCCC
Q 005913          652 LQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       652 l~fs~~~~~La~gs~dgs  669 (670)
                      ++.+|+|.++++++.|.|
T Consensus       640 Lav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  640 LAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             eEEcCCCCeEEeccCCce
Confidence            999999999999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-29  Score=237.23  Aligned_cols=292  Identities=20%  Similarity=0.273  Sum_probs=242.8

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      -+.+|..+++-+.++.+|.+|.+++.|..+.||-...                            +..+-.+.||++.|+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n----------------------------GerlGty~GHtGavW   56 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN----------------------------GERLGTYDGHTGAVW   56 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecC----------------------------CceeeeecCCCceEE
Confidence            4678999999999999999999999999999997532                            456778899999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-----CCCcEEEEECC-------
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARIWSMD-------  493 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-----~dg~v~lwd~~-------  493 (670)
                      |+..+.+.+.+++|+.|.++++||+.+++++..++. ..+|+.+.|+++|++++.+.     ..+.|.++|++       
T Consensus        57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~  135 (327)
T KOG0643|consen   57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID  135 (327)
T ss_pred             EEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence            999999999999999999999999999999999884 67899999999999888775     34789999987       


Q ss_pred             CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (670)
Q Consensus       494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~  572 (670)
                      ...|...+..+.+.++.+-|.|-+.+|++|..||.|.+||+++|+ .+..-..|...|+.++++||..++++++.|.+-+
T Consensus       136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak  215 (327)
T KOG0643|consen  136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK  215 (327)
T ss_pred             ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence            456788888899999999999999999999999999999999984 4556678999999999999999999999999999


Q ss_pred             EEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc-cCCcccccccccCCCCCCeEE
Q 005913          573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK-SGTNRLRSLKTLPTKSTPVYS  651 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~  651 (670)
                      +||..+-.+++++. ...+|++.+++|-...++.|+.....-|=-...  +..+.+.. -....-..+..+.+|-+||++
T Consensus       216 l~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~--r~GKFEArFyh~i~eEEigrvkGHFGPINs  292 (327)
T KOG0643|consen  216 LVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTST--RAGKFEARFYHLIFEEEIGRVKGHFGPINS  292 (327)
T ss_pred             eeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecc--cccchhhhHHHHHHHHHhccccccccCcce
Confidence            99999999998886 446899999999877777776543322211111  11111100 000011335678899999999


Q ss_pred             EEEecCCcEEEEeeCCCC
Q 005913          652 LQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       652 l~fs~~~~~La~gs~dgs  669 (670)
                      |+|+|+|+..++|+.||.
T Consensus       293 vAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  293 VAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             eEECCCCcccccCCCCce
Confidence            999999999999999984

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.4e-28  Score=268.45  Aligned_cols=257  Identities=18%  Similarity=0.282  Sum_probs=206.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..|++...++|+..+++++.+.....|+......  ......             ..........+.+|.+.|++++|+|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~~~-------------~G~~~~~~~~l~GH~~~V~~v~fsP   85 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA--VLKHTD-------------YGKLASNPPILLGQEGPIIDVAFNP   85 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceE--Eeeccc-------------cccCCCCCceEeCCCCCEEEEEEcC
Confidence            3567777888877778887888888898654221  100000             0000112234789999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEec
Q 005913          432 -LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       432 -~~~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                       ++++|++|+.|++|++||+.++       ..+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++++.+..+.
T Consensus        86 ~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~  165 (493)
T PTZ00421         86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK  165 (493)
T ss_pred             CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence             7889999999999999999764       3467788999999999999975 699999999999999999999999999


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEE----CCCeEEEEeCC
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGD----EDGTIMMWDLA  577 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~sg~----~dg~I~iwDl~  577 (670)
                      +|...|.+++|+|++++|++|+.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++||++
T Consensus       166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            99999999999999999999999999999999999999999888765 45678999888887754    47999999998


Q ss_pred             CCe-eeEEeeCCC-cceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCcc
Q 005913          578 SGR-CVTPLMGHT-SCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTK  623 (670)
Q Consensus       578 ~~~-~~~~~~~h~-~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~  623 (670)
                      +.. ++.....+. ..+....|++++++|++|+ .||.|++||+..+..
T Consensus       246 ~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        246 KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence            754 444333333 4566678999999999888 599999999988654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.9e-29  Score=250.59  Aligned_cols=276  Identities=22%  Similarity=0.393  Sum_probs=245.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      .+++++...|..+.+++|+.|..+.++|...                            .+.+..+.||...|+.+.|+|
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s----------------------------~q~l~~~~Gh~kki~~v~~~~  271 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS----------------------------NQILATLKGHTKKITSVKFHK  271 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecch----------------------------hhhhhhccCcceEEEEEEecc
Confidence            3578888888888999999999999999764                            456778999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc--CCCee
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH--LSDVD  509 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~--~~~v~  509 (670)
                      +...+++++.|..|++|.............|..+|+.+..+|.|.||++++.||+..+.|++++..+......  .-.++
T Consensus       272 ~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t  351 (506)
T KOG0289|consen  272 DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT  351 (506)
T ss_pred             chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence            9999999999999999999988888888999999999999999999999999999999999999888776642  23589


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC
Q 005913          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (670)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~  589 (670)
                      +.+|||||..|.+|+.||.|++||+.++..+..|.+|.++|..++|+.+|.||+++++|+.|++||++.-+..+++.-..
T Consensus       352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~  431 (506)
T KOG0289|consen  352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE  431 (506)
T ss_pred             EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988777776433


Q ss_pred             -cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          590 -SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       590 -~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                       ..|.+++|.+.|.+|+.++.|=.|++++-.+             ..|..+..+..+.+..+++.|....+++++|+.|.
T Consensus       432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~  498 (506)
T KOG0289|consen  432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-------------KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA  498 (506)
T ss_pred             cccceeEEEcCCCCeEEeecceeEEEEEeccc-------------ccceeeehhhhcccccceeeecccceEEeeccchh
Confidence             4799999999999999997775555554322             34667788888888999999999999999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.1e-28  Score=287.01  Aligned_cols=239  Identities=23%  Similarity=0.380  Sum_probs=208.6

Q ss_pred             CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          350 THNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       350 ~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      ++..|.+++|++ ++.+||+|+.||.|+|||+.+                            ......+.+|.+.|++++
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------------------------~~~~~~~~~H~~~V~~l~  582 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------------------------SQLVTEMKEHEKRVWSID  582 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------------------------CeEEEEecCCCCCEEEEE
Confidence            456799999987 478999999999999999874                            234556778999999999


Q ss_pred             EcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc-eeEEecccC
Q 005913          429 FSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ-PLRIMAGHL  505 (670)
Q Consensus       429 ~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~-~~~~~~~~~  505 (670)
                      |+| ++.+|++|+.||+|++||+.++..+..+..+ ..|.++.|++ +|.+|++|+.||.|++||+++.. ++..+.+|.
T Consensus       583 ~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~  661 (793)
T PLN00181        583 YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS  661 (793)
T ss_pred             EcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC
Confidence            997 7889999999999999999999888888755 5799999954 79999999999999999998765 567788999


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~------~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      ..|.++.|. ++.+|++++.|++|++||++.      +.++..+.+|...+.+++|+|++.+|++|+.||.|++|+....
T Consensus       662 ~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        662 KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999997 788999999999999999974      3578889999999999999999999999999999999998765


Q ss_pred             eeeEEe-------------eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          580 RCVTPL-------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       580 ~~~~~~-------------~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      .++..+             ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus       741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            443222             234567999999999999999999999999996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=255.60  Aligned_cols=275  Identities=23%  Similarity=0.364  Sum_probs=230.3

Q ss_pred             ecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      ...++.|++++|||...+ +|+. ..-.+.||+..+..                            ..+.+......|++
T Consensus        23 ~ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~----------------------------~~k~~srFk~~v~s   73 (487)
T KOG0310|consen   23 HKEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRS----------------------------VRKTFSRFKDVVYS   73 (487)
T ss_pred             ccccCcceeEecCCCCCCceEEe-cccEEEEEecchhh----------------------------hhhhHHhhccceeE
Confidence            455678999999996554 4444 45578999976521                            22233445678999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      +.|-.||++|++|...|.|+++|+.+...+..+.+|+.||..+.|+| ++..|++|+.|+.+++||+.+......+.+|.
T Consensus        74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht  153 (487)
T KOG0310|consen   74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT  153 (487)
T ss_pred             EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc
Confidence            99999999999999999999999887777888999999999999999 56678889999999999999988766889999


Q ss_pred             CCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-ee
Q 005913          506 SDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CV  582 (670)
Q Consensus       506 ~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-~~  582 (670)
                      ..|.|.+|+|- +..+++|+.||.|++||+++. ..+..+ .|..+|.++.+-|.|..+++++. ..|++||+.+|. .+
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL  231 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence            99999999985 558899999999999999987 555555 69999999999999999999875 579999999664 44


Q ss_pred             EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEE
Q 005913          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA  662 (670)
Q Consensus       583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La  662 (670)
                      ..+..|...|+|+.+..++..|++||-|+.|+|||+.+-+.               +..+ ...+||.+++.+|+++.++
T Consensus       232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv---------------v~s~-~~~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV---------------VHSW-KYPGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE---------------EEee-ecccceeeEEecCCCceEE
Confidence            55556999999999999999999999999999999766432               2233 4567999999999999999


Q ss_pred             EeeCCCC
Q 005913          663 AGALSKT  669 (670)
Q Consensus       663 ~gs~dgs  669 (670)
                      +|..+|.
T Consensus       296 iGmsnGl  302 (487)
T KOG0310|consen  296 IGMSNGL  302 (487)
T ss_pred             Eecccce
Confidence            9999874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.8e-29  Score=265.42  Aligned_cols=263  Identities=25%  Similarity=0.421  Sum_probs=230.6

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      +..+++|+-... .++-.|..|.++|..++|+|++.++++|+.|-.|+||+...                          
T Consensus        30 sG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--------------------------   82 (1202)
T KOG0292|consen   30 SGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--------------------------   82 (1202)
T ss_pred             Cceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc--------------------------
Confidence            346677764332 23446889999999999999999999999999999999875                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                        .+...++.||-.-|..+.|++.-.+++|+|.|.||+||++.+..++.++.||+.-|.|.+|+|....++++|-|.+||
T Consensus        83 --rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             --ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence              456677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCc-----------------------------eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-
Q 005913          489 IWSMDRIQ-----------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-  538 (670)
Q Consensus       489 lwd~~~~~-----------------------------~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-  538 (670)
                      +||+..-+                             ....+.||...|+-++|||.-..|++|+.|+.|++|.+..-+ 
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence            99985210                             124567999999999999999999999999999999987543 


Q ss_pred             -EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          539 -CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       539 -~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                       .+-+..+|.+.|+|+-|+|....+++.+.|++|+|||+.....+.+++.....-|.++-+|..++++.|- |+-+.||.
T Consensus       241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFk  319 (1202)
T KOG0292|consen  241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFK  319 (1202)
T ss_pred             eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEE
Confidence             4567789999999999999999999999999999999999999999988888999999999999777665 55566887


Q ss_pred             CCCC
Q 005913          618 VTTS  621 (670)
Q Consensus       618 ~~~~  621 (670)
                      +...
T Consensus       320 leRE  323 (1202)
T KOG0292|consen  320 LERE  323 (1202)
T ss_pred             Eccc
Confidence            7643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.4e-28  Score=234.11  Aligned_cols=275  Identities=24%  Similarity=0.358  Sum_probs=232.5

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      |....+.|+++.|+++|.+|++++.|-+++|||...                            ....+....+.-.|..
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------------g~~~~ti~skkyG~~~   61 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------------GKQVKTINSKKYGVDL   61 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------------CceeeEeecccccccE
Confidence            334567899999999999999999999999999875                            2344555566678888


Q ss_pred             EEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          427 ASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       427 l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ++|......++.++.  |.+||..++.+.+.++.+.||...|.+++.+|-+..|++++.|++|++||++..++...+.. 
T Consensus        62 ~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-  140 (311)
T KOG1446|consen   62 ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-  140 (311)
T ss_pred             EEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-
Confidence            899877777777766  88999999999999999999999999999999999999999999999999998777766653 


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--cEEEEEe---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~---~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                       ..-..++|.|.|-++|++.....|++||++.-  .+..+|.   +.....+.+.|||||++|+.++..+.+++.|.-+|
T Consensus       141 -~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G  219 (311)
T KOG1446|consen  141 -SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG  219 (311)
T ss_pred             -CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence             33456789999999999988889999999853  4444443   33567899999999999999999999999999999


Q ss_pred             eeeEEeeCCCcce---EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC-CCCCeEEEEEe
Q 005913          580 RCVTPLMGHTSCV---WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFS  655 (670)
Q Consensus       580 ~~~~~~~~h~~~V---~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fs  655 (670)
                      ..+..+..+...-   -+.+|+||++++++|+.||+|.+|+++++...               ..+.+ +.+++.++.|+
T Consensus       220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v---------------~~~~~~~~~~~~~~~fn  284 (311)
T KOG1446|consen  220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV---------------AVLRGPNGGPVSCVRFN  284 (311)
T ss_pred             cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe---------------eEecCCCCCCccccccC
Confidence            9998888776432   57889999999999999999999999887653               23333 67889999999


Q ss_pred             cCCcEEEEeeC
Q 005913          656 RRNLLFAAGAL  666 (670)
Q Consensus       656 ~~~~~La~gs~  666 (670)
                      |.-.++|+++.
T Consensus       285 P~~~mf~sa~s  295 (311)
T KOG1446|consen  285 PRYAMFVSASS  295 (311)
T ss_pred             CceeeeeecCc
Confidence            99999998874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=8.6e-29  Score=249.38  Aligned_cols=302  Identities=24%  Similarity=0.390  Sum_probs=247.6

Q ss_pred             ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (670)
Q Consensus       341 s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (670)
                      +..+.....|+-+|+|++++||+++.++++.+|+|.=|++.+.....-.         .+...+............ .+|
T Consensus       132 s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i---------~~~~ev~k~~~~~~k~~r-~~h  201 (479)
T KOG0299|consen  132 SSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYI---------IERDEVLKSHGNPLKESR-KGH  201 (479)
T ss_pred             cccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccc---------cccchhhhhccCCCCccc-ccc
Confidence            3335566778889999999999999999999999999998764322100         000000000011111111 489


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      ...+.+++.|+||++|++|+.|..|.||+.++.+.+..+++|...|.+++|-...+.+++++.|+++++|+++....+.+
T Consensus       202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             cceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      +.+|.+.|..+....-++.+-+|+.|+++++|++. .....+|.+|.+.+.|++|-.+ ..+++|+.+|.|.+|++.+.+
T Consensus       282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             HhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC
Confidence            99999999999988888888889999999999994 4445568899999999999854 578999999999999999998


Q ss_pred             eeEEee-CC-----------CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913          581 CVTPLM-GH-----------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP  648 (670)
Q Consensus       581 ~~~~~~-~h-----------~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (670)
                      ++.... +|           ...|++++..|...++++|+.+|.|++|-+..+-.           .+.++..++ -.+-
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-----------~i~~l~~ls-~~Gf  427 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-----------AINLLYSLS-LVGF  427 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc-----------ccceeeecc-cccE
Confidence            887654 22           12789999999999999999999999999988643           224455554 5678


Q ss_pred             eEEEEEecCCcEEEEeeC
Q 005913          649 VYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       649 V~~l~fs~~~~~La~gs~  666 (670)
                      |++++|+++|..+++|..
T Consensus       428 VNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  428 VNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             EEEEEEccCCCEEEEecc
Confidence            999999999998777753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=7.3e-30  Score=238.22  Aligned_cols=279  Identities=23%  Similarity=0.357  Sum_probs=244.1

Q ss_pred             EEeecCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          345 YTFINTHNGLNCASIS---QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs---~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      ++-.+|..+|..++||   |+|-+|++++.||.-.+-+=+                            .+..+-++.||.
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~----------------------------tgdwigtfeghk   59 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD----------------------------TGDWIGTFEGHK   59 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC----------------------------CCCcEEeeeccC
Confidence            3568899999999998   589999999998875443322                            234667899999


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc-eeEE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLRI  500 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~-~~~~  500 (670)
                      +.|++...+.+...-++++.|-+-++||.-++..+..+. |..-|..++|+.|.++|++|+.+..+|++|+++.+ +...
T Consensus        60 gavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E  138 (334)
T KOG0278|consen   60 GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE  138 (334)
T ss_pred             cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh
Confidence            999999999888889999999999999999999988887 88889999999999999999999999999998754 5677


Q ss_pred             ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      +.+|.+.|..+-|....+.|++.+.|++||+||.+++..+..+. ...+|+++.++++|++|.++. .+.|.+||..+-.
T Consensus       139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~  216 (334)
T KOG0278|consen  139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG  216 (334)
T ss_pred             hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEecccccc
Confidence            88999999999999999999999999999999999999999886 457899999999999887764 5779999999988


Q ss_pred             eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL  660 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~  660 (670)
                      .++.+.. ...|.+.+.+|+...+++|+.|+.++.||..++..+.              .....|.+||.||.|+|+|.+
T Consensus       217 ~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~--------------~~nkgh~gpVhcVrFSPdGE~  281 (334)
T KOG0278|consen  217 LLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG--------------SYNKGHFGPVHCVRFSPDGEL  281 (334)
T ss_pred             ceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceee--------------ecccCCCCceEEEEECCCCce
Confidence            8887753 3468899999999999999999999999999986431              113688999999999999999


Q ss_pred             EEEeeCCCC
Q 005913          661 FAAGALSKT  669 (670)
Q Consensus       661 La~gs~dgs  669 (670)
                      .|+||.|||
T Consensus       282 yAsGSEDGT  290 (334)
T KOG0278|consen  282 YASGSEDGT  290 (334)
T ss_pred             eeccCCCce
Confidence            999999997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.3e-29  Score=231.36  Aligned_cols=237  Identities=25%  Similarity=0.441  Sum_probs=214.3

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      ....+..|.++|..+.|+-+|+|.++|+.|.+|++|+...+.++++|.+|...|.+++.+.|+..|++|+.|+.+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC--CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                      ++++.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.++  .++++++......|.++..+  +..|++|+.||+
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt  166 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT  166 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence            99999999999999999999999999999999999999999985  46788888888899999887  668999999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  650 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  650 (670)
                      ++.||++.|+......+  .+|++++|+++++....++-|+++++.|-.+++               ++..+.+|.+.-+
T Consensus       167 vRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk---------------lL~sYkGhkn~ey  229 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGK---------------LLKSYKGHKNMEY  229 (307)
T ss_pred             EEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhH---------------HHHHhccccccee
Confidence            99999999988766655  479999999999999999999999999988875               4566667665544


Q ss_pred             --EEEEecCCcEEEEeeCCC
Q 005913          651 --SLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       651 --~l~fs~~~~~La~gs~dg  668 (670)
                        .++++.....+++|+.||
T Consensus       230 kldc~l~qsdthV~sgSEDG  249 (307)
T KOG0316|consen  230 KLDCCLNQSDTHVFSGSEDG  249 (307)
T ss_pred             eeeeeecccceeEEeccCCc
Confidence              446677778888998887

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.6e-30  Score=255.80  Aligned_cols=291  Identities=23%  Similarity=0.327  Sum_probs=248.5

Q ss_pred             CCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcccee
Q 005913          336 SAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT  415 (670)
Q Consensus       336 ~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (670)
                      ...+|+.+.+.+..|.+.+..+.|-++...|++|+.|..|++|++...+                          .....
T Consensus       160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--------------------------~~~~~  213 (459)
T KOG0288|consen  160 EDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--------------------------SELIS  213 (459)
T ss_pred             hcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch--------------------------hhhhh
Confidence            3467888888889999999999999999999999999999999987522                          12445


Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~  495 (670)
                      .+.|..++|+++.|.+++.++++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.++++||+...
T Consensus       214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~  293 (459)
T KOG0288|consen  214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA  293 (459)
T ss_pred             hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence            67778899999999999999999999999999999999999999999999999999987777999999999999999998


Q ss_pred             ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                      .+.+.+. ..+.+..|..+  ...+++|..|+.||+||++++.+.+....+. .|+++..+++|..|.+++.|..+.+.|
T Consensus       294 ~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viD  369 (459)
T KOG0288|consen  294 YCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVID  369 (459)
T ss_pred             heecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeee
Confidence            8777654 23555566554  5678899999999999999999999887764 899999999999999999999999999


Q ss_pred             CCCCeeeEEeeCC----CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913          576 LASGRCVTPLMGH----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS  651 (670)
Q Consensus       576 l~~~~~~~~~~~h----~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  651 (670)
                      +++......+.+.    ....+.+.|||++.|+++||.||.|+||++.+++...             +....+....|++
T Consensus       370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~-------------~l~~s~s~~aI~s  436 (459)
T KOG0288|consen  370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK-------------VLSLSTSNAAITS  436 (459)
T ss_pred             cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE-------------EeccCCCCcceEE
Confidence            9999888777642    2447889999999999999999999999999876421             1122233336999


Q ss_pred             EEEecCCcEEEEeeCCCC
Q 005913          652 LQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       652 l~fs~~~~~La~gs~dgs  669 (670)
                      ++|+|.|..|++++.++.
T Consensus       437 ~~W~~sG~~Llsadk~~~  454 (459)
T KOG0288|consen  437 LSWNPSGSGLLSADKQKA  454 (459)
T ss_pred             EEEcCCCchhhcccCCcc
Confidence            999999999999887753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=8.5e-29  Score=237.17  Aligned_cols=262  Identities=24%  Similarity=0.409  Sum_probs=235.2

Q ss_pred             HcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       327 ~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      .....+.||+..--.-.+.++.+|.+.|..+.|.+|++.+++++.|.+|+.||..+                        
T Consensus        66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t------------------------  121 (338)
T KOG0265|consen   66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET------------------------  121 (338)
T ss_pred             CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc------------------------
Confidence            34567889998777777888889999999999999999999999999999999986                        


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                          ++..+.+++|.+-|+++.-+.-|. ++.+++.||++++||+++...++.+. ...+++++.|...+..+.+|+-|+
T Consensus       122 ----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  122 ----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             ----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence                456677889999999998555554 56689999999999999888888776 366899999999999999999999


Q ss_pred             cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC----CcEEEEEecCCC----CeEEEEEcC
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----GECVRIFIGHRS----MILSLAMSP  557 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~----~~~~~~~~~h~~----~I~~l~~sp  557 (670)
                      .|++||++......++.||...|+.+..+|+|.++.+-+.|.++++||++.    .+++..+.+|..    ....++|+|
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp  276 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP  276 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence            999999999999999999999999999999999999999999999999984    456888887754    356788999


Q ss_pred             CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       558 ~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      ++..+.+|+.|..+++||..+...+..+.+|.+.|.+++|+|...+|.+++.|.+|.+=.
T Consensus       277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            999999999999999999999899999999999999999999999999999999998643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=3.7e-29  Score=239.93  Aligned_cols=264  Identities=25%  Similarity=0.458  Sum_probs=218.0

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC-CCCCccceeeeecCccC
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-PNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~  423 (670)
                      .++..|.+.+.|.+||+||.++|+|+.|..|+|.|+...-...           .+.+.+.. .......++++..|..+
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks-----------~~~em~~~~~qa~hPvIRTlYDH~de  174 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS-----------KPKEMISGDTQARHPVIRTLYDHVDE  174 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc-----------chhhhccCCcccCCceEeehhhccCc
Confidence            3567789999999999999999999999999999987421100           00001111 11224678889999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      |+++.|+|....|++|+.|++|+++|.......+.++  ....+|.++.|+|.|.++++|..-.++++||+++.++...-
T Consensus       175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa  254 (430)
T KOG0640|consen  175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA  254 (430)
T ss_pred             ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence            9999999999999999999999999987554333222  35678999999999999999999999999999998776543


Q ss_pred             ---cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          502 ---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       502 ---~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                         ..|.+.|+++.+++.++..++|+.||.|++||--+++|++++. .|. ..|.+..|..+|+++++.+.|..+++|.+
T Consensus       255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI  334 (430)
T ss_pred             CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence               3688999999999999999999999999999999999998874 454 46899999999999999999999999999


Q ss_pred             CCCeeeEEe-------------------------------------------------eCCCcceEEEEEcCCCCEEEEE
Q 005913          577 ASGRCVTPL-------------------------------------------------MGHTSCVWTLAYSCEGSLLASG  607 (670)
Q Consensus       577 ~~~~~~~~~-------------------------------------------------~~h~~~V~sl~~s~~g~~l~sg  607 (670)
                      .+++++..+                                                 .+|++.+..+..||.+.-+++|
T Consensus       335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTc  414 (430)
T KOG0640|consen  335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTC  414 (430)
T ss_pred             cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeee
Confidence            988877654                                                 2567778888888888889999


Q ss_pred             ECCCcEEEEeCC
Q 005913          608 SADCTVKLWDVT  619 (670)
Q Consensus       608 s~Dg~I~iwd~~  619 (670)
                      +.|-.+|+|--.
T Consensus       415 sdD~raRFWyrr  426 (430)
T KOG0640|consen  415 SDDFRARFWYRR  426 (430)
T ss_pred             cccceeeeeeec
Confidence            999999999643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.1e-27  Score=218.55  Aligned_cols=305  Identities=22%  Similarity=0.366  Sum_probs=243.6

Q ss_pred             CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      |.....+.+.....|.+++|+|.|.+.|+|+...+.+|............  .  +....         ......+..+.
T Consensus        21 ~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~--h--ea~~~---------pp~v~~kr~kh   87 (350)
T KOG0641|consen   21 KHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA--H--EAAKQ---------PPSVLCKRNKH   87 (350)
T ss_pred             cceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccc--c--ccccC---------CCeEEeeeccc
Confidence            33445566777788999999999999999999999999876531111000  0  00000         00123445567


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----eEEeeCCCccEeEEEEec----CCCEEEEEE-CCCcEEE
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----LVCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARI  489 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-----~~~~~~h~~~V~~l~~sp----~g~~l~s~s-~dg~v~l  489 (670)
                      |.+.|+|.+|+|+|.+|++|+.|.+|++.-.+...+     -..+..|.+.|.+++|-.    .|..+++++ .|..|++
T Consensus        88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~  167 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI  167 (350)
T ss_pred             cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence            999999999999999999999999999987765443     245677999999999965    355677765 5778888


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--C-----CCCeEEEEEcCCCCEE
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H-----RSMILSLAMSPDGRYM  562 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h-----~~~I~~l~~sp~g~~l  562 (670)
                      -|..+++....+.+|.+.|.++ ++-++-.+++|+.|.+||+||++-..+++++..  |     ...|.+++..|.|++|
T Consensus       168 tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll  246 (350)
T KOG0641|consen  168 TDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL  246 (350)
T ss_pred             eecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence            8999999999999999999886 345788999999999999999999999987642  2     2569999999999999


Q ss_pred             EEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913          563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL  642 (670)
Q Consensus       563 ~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  642 (670)
                      ++|..|....+||++.++.++.+..|+..|.++.|||...++.+|+.|..|++-|+...-..           .-.+...
T Consensus       247 ~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~-----------el~~~vv  315 (350)
T KOG0641|consen  247 ASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH-----------ELPIMVV  315 (350)
T ss_pred             eeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh-----------cCceEEE
Confidence            99999999999999999999999999999999999999999999999999999998763210           0122334


Q ss_pred             CCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          643 PTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       643 ~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ..|...+..+.|+|...-+.+.+.|.+
T Consensus       316 ~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  316 AEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             EeccCceEEEEecCccceeeeccCcce
Confidence            457777889999999999999888875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=4.6e-30  Score=259.93  Aligned_cols=261  Identities=25%  Similarity=0.396  Sum_probs=227.2

Q ss_pred             cccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      +...++||+.-.-..|+.||.+|..+|..++|+++|..+.+++.|++|++||+.++..                      
T Consensus       235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~----------------------  292 (503)
T KOG0282|consen  235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV----------------------  292 (503)
T ss_pred             CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE----------------------
Confidence            4457888888777889999999999999999999999999999999999999987322                      


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~  486 (670)
                            ...+ .-...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.|..|-++|..+.|-++|.+|++.+.|++
T Consensus       293 ------~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks  365 (503)
T KOG0282|consen  293 ------LSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS  365 (503)
T ss_pred             ------EEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence                  1111 123568999999999 78999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC---cEEEEEecCCC--CeEEEEEcCCCC
Q 005913          487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRS--MILSLAMSPDGR  560 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~--~I~~l~~sp~g~  560 (670)
                      ++||+.+.+.++..+. .+.-...|+..+|+++++++-+.|..|.++.+...   .....|.+|..  .-..+.|||||+
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence            9999999887776544 23345778999999999999999999999987532   23345777763  466789999999


Q ss_pred             EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEe
Q 005913          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWD  617 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd  617 (670)
                      +|++|+.||.+.+||.++.+.+..+..|.+++..+.|+|. ...+|+|+.||.|++|+
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999999999999999999999999999994 56899999999999996

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.3e-27  Score=262.10  Aligned_cols=247  Identities=19%  Similarity=0.329  Sum_probs=195.5

Q ss_pred             EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 005913          369 GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRL  447 (670)
Q Consensus       369 g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~l  447 (670)
                      |+.++.|++|+...                            ......+.+|.++|.+++|+|+ +.+|++|+.||+|++
T Consensus        50 GG~~gvI~L~~~~r----------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI  101 (568)
T PTZ00420         50 GGLIGAIRLENQMR----------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV  101 (568)
T ss_pred             CCceeEEEeeecCC----------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence            56778899998653                            2345678899999999999997 789999999999999


Q ss_pred             EeCCCCc--------eeEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC
Q 005913          448 WSTKLNA--------NLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN  518 (670)
Q Consensus       448 wd~~~~~--------~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  518 (670)
                      ||+.++.        .+..+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+|+|+
T Consensus       102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~  180 (568)
T PTZ00420        102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN  180 (568)
T ss_pred             EECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC
Confidence            9997642        34467889999999999998876 5789999999999999988777765 567899999999999


Q ss_pred             EEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEE-----EEcCCCCEEEEEECCC----eEEEEeCCC-CeeeEEeeC-
Q 005913          519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL-----AMSPDGRYMASGDEDG----TIMMWDLAS-GRCVTPLMG-  587 (670)
Q Consensus       519 ~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l-----~~sp~g~~l~sg~~dg----~I~iwDl~~-~~~~~~~~~-  587 (670)
                      +|++++.|+.|++||+++++.+..+.+|.+.+.+.     .|++++.+|++++.|+    .|+|||+++ +.++..+.. 
T Consensus       181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld  260 (568)
T PTZ00420        181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID  260 (568)
T ss_pred             EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence            99999999999999999999999999998765432     3568999999988774    799999995 566655433 


Q ss_pred             -CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          588 -HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       588 -h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                       +.+.+......++|.++++|+.|++|++|++..+..             ..+..+. +..|+.+++|.|..
T Consensus       261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-------------~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-------------RKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-------------Eeecccc-cCCCccceEEcccc
Confidence             334444444456788999999999999999976531             1222332 44566677777653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8e-29  Score=232.07  Aligned_cols=236  Identities=26%  Similarity=0.395  Sum_probs=205.3

Q ss_pred             CccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC-CceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc
Q 005913          420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ  496 (670)
Q Consensus       420 h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~  496 (670)
                      -...++.++|+++. +.+++++.||+++|||+.. ..++..++.|...|.++.|++ ++..++++|.|++|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            45789999999976 4788999999999999653 346888999999999999999 66778999999999999999999


Q ss_pred             eeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 005913          497 PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMW  574 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~iw  574 (670)
                      .++++.+|.+-|...+|+| ..+.+++++.|+++++||++.......+..|...|.|+.|+. +.+.|+||+.|+.|++|
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            9999999999999999998 468999999999999999986544444889999999999998 66789999999999999


Q ss_pred             eCCCC-eeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913          575 DLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL  652 (670)
Q Consensus       575 Dl~~~-~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  652 (670)
                      |+++- .++..+.+|.-.|..+.|||. ..+|++++.|-+++|||.....              ..+.++..|..-|..+
T Consensus       219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------------s~~e~~~~HtEFv~g~  284 (311)
T KOG0277|consen  219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--------------SAIETVDHHTEFVCGL  284 (311)
T ss_pred             ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--------------hhhhhhhccceEEecc
Confidence            99875 577888999999999999995 5689999999999999988654              2355667788889999


Q ss_pred             EEec-CCcEEEEeeCCCC
Q 005913          653 QFSR-RNLLFAAGALSKT  669 (670)
Q Consensus       653 ~fs~-~~~~La~gs~dgs  669 (670)
                      .||+ +...+|..+.|++
T Consensus       285 Dws~~~~~~vAs~gWDe~  302 (311)
T KOG0277|consen  285 DWSLFDPGQVASTGWDEL  302 (311)
T ss_pred             ccccccCceeeecccccc
Confidence            9998 4678888888864

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.8e-28  Score=241.58  Aligned_cols=264  Identities=24%  Similarity=0.460  Sum_probs=221.4

Q ss_pred             cccceecCCCCCCceeEEEeecCCCCEEEEEEcC-C--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccc
Q 005913          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQ-D--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (670)
Q Consensus       328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~-d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (670)
                      +....++|...  ..+.++..+|.++|.+++|-- +  ...+++++.|.++++|.++....                   
T Consensus       123 YDg~~riWd~~--Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~-------------------  181 (423)
T KOG0313|consen  123 YDGTSRIWDLK--GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN-------------------  181 (423)
T ss_pred             cCCeeEEEecC--CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh-------------------
Confidence            34455666544  445567899999999888743 2  34699999999999999875221                   


Q ss_pred             cCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-------------------------CCceeEEe
Q 005913          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-------------------------LNANLVCY  459 (670)
Q Consensus       405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~-------------------------~~~~~~~~  459 (670)
                           .........||.++|-+++..++|..+++||.|.+|.||+..                         +..++..+
T Consensus       182 -----~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  182 -----KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             -----hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence                 112333445999999999999999999999999999999932                         12346778


Q ss_pred             eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-
Q 005913          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-  538 (670)
Q Consensus       460 ~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-  538 (670)
                      .||..+|.++.|++ ...+++++.|.+|+.||+.++.....+.+. ..+.|+..+|..++|++|+.|..||+||.+++. 
T Consensus       257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            89999999999998 668999999999999999999988887754 679999999999999999999999999999764 


Q ss_pred             --EEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913          539 --CVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (670)
Q Consensus       539 --~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~  614 (670)
                        ....|.+|.+.|.++.|+|. ...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..|++||.|++|+
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR  413 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence              45678899999999999995 4578899999999999999887 999999999999999997 567899999999999


Q ss_pred             EEeCCC
Q 005913          615 LWDVTT  620 (670)
Q Consensus       615 iwd~~~  620 (670)
                      |+.-..
T Consensus       414 i~~~~~  419 (423)
T KOG0313|consen  414 IFKGSP  419 (423)
T ss_pred             Eecccc
Confidence            987543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=6.1e-28  Score=263.83  Aligned_cols=266  Identities=29%  Similarity=0.526  Sum_probs=233.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee-eecCccCEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSAS  428 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~  428 (670)
                      +...+.|..|.  ..++++|+.+++|++|+...                            ...... +.||.+.|.+++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~----------------------------~~~i~~~l~GH~g~V~~l~  256 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN----------------------------GYLILTRLVGHFGGVWGLA  256 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeeccc----------------------------ceEEEeeccCCCCCceeEE
Confidence            45679999998  66899999999999999875                            223344 889999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe
Q 005913          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v  508 (670)
                      +..-+..|++|+.|.++++||..++.+...+.+|...|.++...  +.++++|+.|.+|++|++.++..+..+.+|..+|
T Consensus       257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V  334 (537)
T KOG0274|consen  257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV  334 (537)
T ss_pred             EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccE
Confidence            99878899999999999999999999999999999999888775  5578889999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeC
Q 005913          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG  587 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~  587 (670)
                      .|+..+  +.++++|+.|++|++||+.+++++..+.+|.+.|+++.+.+. ..+++|+.|+.|++||+.+. +++..+.+
T Consensus       335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence            999987  889999999999999999999999999999999999988865 89999999999999999999 99999999


Q ss_pred             CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC-CCCCeEEEEEecCCcEEEEeeC
Q 005913          588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       588 h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      |.+-|.++.+  .+++|++++.||+|++||...++.               +.++.+ +...|..+++.  ...+++++.
T Consensus       412 h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~---------------~~~~~~~~~~~v~~l~~~--~~~il~s~~  472 (537)
T KOG0274|consen  412 HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGEC---------------LRTLEGRHVGGVSALALG--KEEILCSSD  472 (537)
T ss_pred             Cccccccccc--ccceeEeccccccEEEeecccCce---------------eeeeccCCcccEEEeecC--cceEEEEec
Confidence            9998877665  578999999999999999988764               334444 56778888877  345666666


Q ss_pred             CCC
Q 005913          667 SKT  669 (670)
Q Consensus       667 dgs  669 (670)
                      +|+
T Consensus       473 ~~~  475 (537)
T KOG0274|consen  473 DGS  475 (537)
T ss_pred             CCe
Confidence            664

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.7e-28  Score=247.07  Aligned_cols=292  Identities=22%  Similarity=0.321  Sum_probs=228.4

Q ss_pred             CCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-
Q 005913          339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-  417 (670)
Q Consensus       339 ~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  417 (670)
                      +|..+...+.++...|+++++.|.|..|++|+-|-+|++||+..+..                        ..+..+.+ 
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda------------------------s~~~fr~l~  210 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA------------------------SMRSFRQLQ  210 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccc------------------------cchhhhccC
Confidence            45566677888888999999999999999999999999999986321                        11122222 


Q ss_pred             ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE------------EeeCCCccEeEEEEecC-CCEEEEEECC
Q 005913          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV------------CYKGHNYPVWDVQFNPQ-GHYFASSSHD  484 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~------------~~~~h~~~V~~l~~sp~-g~~l~s~s~d  484 (670)
                      ......|.++.|++.|..|++.+.....+|+|-.......            ..+||...++|.+|+|. ...|++++.|
T Consensus       211 P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D  290 (641)
T KOG0772|consen  211 PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD  290 (641)
T ss_pred             cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC
Confidence            2344679999999999999999888999999977554433            23579999999999995 4579999999


Q ss_pred             CcEEEEECCCCce-eEEec-----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc---EEEEEecCCC--CeEEE
Q 005913          485 RTARIWSMDRIQP-LRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRS--MILSL  553 (670)
Q Consensus       485 g~v~lwd~~~~~~-~~~~~-----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~--~I~~l  553 (670)
                      |++|+|++++.+. ..++.     +..-.++.++|+|+|+.||+|+.||.|.+|+.....   ....-..|..  .|+||
T Consensus       291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi  370 (641)
T KOG0772|consen  291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI  370 (641)
T ss_pred             CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE
Confidence            9999999986543 33332     233468899999999999999999999999975432   1233346766  89999


Q ss_pred             EEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCC--cceEEEEEcCCCCEEEEEEC------CCcEEEEeCCCCccc
Q 005913          554 AMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHT--SCVWTLAYSCEGSLLASGSA------DCTVKLWDVTTSTKV  624 (670)
Q Consensus       554 ~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs~------Dg~I~iwd~~~~~~~  624 (670)
                      .||++|++|++-+.|+++++||++.. +++....+-.  -+-+.++|||+.++|++|+.      .|++.+||-.+..  
T Consensus       371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d--  448 (641)
T KOG0772|consen  371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD--  448 (641)
T ss_pred             EeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee--
Confidence            99999999999999999999999865 4555554432  34578999999999999863      4789999977653  


Q ss_pred             cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                                   .++.+.-....|..+.|+|.-.-+.+|+.||+
T Consensus       449 -------------~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~  480 (641)
T KOG0772|consen  449 -------------TVYKIDISTASVVRCLWHPKLNQIFAGSGDGT  480 (641)
T ss_pred             -------------eEEEecCCCceEEEEeecchhhheeeecCCCc
Confidence                         34455555778999999999777788888886

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.3e-27  Score=229.12  Aligned_cols=269  Identities=20%  Similarity=0.316  Sum_probs=218.6

Q ss_pred             CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          351 HNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       351 ~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      .+.|.+++||| ...++++|+.||+||+|+++..+..                          .-+....|.++|.+++|
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~--------------------------~~ka~~~~~~PvL~v~W   80 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL--------------------------VPKAQQSHDGPVLDVCW   80 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcc--------------------------cchhhhccCCCeEEEEE
Confidence            46799999999 5677779999999999999852111                          11334568999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC--EEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~--~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~  507 (670)
                      +.+|..+++|+.|+.+++||+.++ .+..+..|..+|..+.|-+...  .|+|||.|++|+.||++...++..+.-. ..
T Consensus        81 sddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eR  158 (347)
T KOG0647|consen   81 SDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ER  158 (347)
T ss_pred             ccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ce
Confidence            999999999999999999999988 5556677999999999988655  7999999999999999999998887743 55


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE--EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe--eeE
Q 005913          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVT  583 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~--~~~  583 (670)
                      +.++..  -...++++..++.|.+|+++++.....  ...-.-.++|+++.++....+.|+-+|.+-|..+..+.  .-.
T Consensus       159 vYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF  236 (347)
T KOG0647|consen  159 VYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF  236 (347)
T ss_pred             eeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence            666554  345788899999999999987654321  11223468999999998888999999999999998763  333


Q ss_pred             EeeCCC---------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEE
Q 005913          584 PLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF  654 (670)
Q Consensus       584 ~~~~h~---------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f  654 (670)
                      .++-|.         -.|.+++|+|.-..|+|+|.||++.+||-....+               +.+.+++..||.+.+|
T Consensus       237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k---------------Lk~s~~~~qpItcc~f  301 (347)
T KOG0647|consen  237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK---------------LKTSETHPQPITCCSF  301 (347)
T ss_pred             eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh---------------hhccCcCCCccceeEe
Confidence            445554         2477899999999999999999999999776543               5677889999999999


Q ss_pred             ecCCcEEEEe
Q 005913          655 SRRNLLFAAG  664 (670)
Q Consensus       655 s~~~~~La~g  664 (670)
                      +.+|.++|-+
T Consensus       302 n~~G~ifaYA  311 (347)
T KOG0647|consen  302 NRNGSIFAYA  311 (347)
T ss_pred             cCCCCEEEEE
Confidence            9999998754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-28  Score=242.51  Aligned_cols=249  Identities=21%  Similarity=0.374  Sum_probs=211.4

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      ..|+.+|..+|..+.||||.++|++++.+..+.+||+.+.....                           .--.+|...
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~---------------------------~y~~~~~~S  314 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH---------------------------LYPSGLGFS  314 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh---------------------------hcccCcCCC
Confidence            56889999999999999999999999999999999998632211                           111235688


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                      +.+++|.|||..+++|+.|++|..||++. ..+...++- ...|++++.++||.++++.+.|..+++++.++......+.
T Consensus       315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis  393 (519)
T KOG0293|consen  315 VSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS  393 (519)
T ss_pred             cceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc
Confidence            99999999999999999999999999984 444444443 3569999999999999999999999999998766555555


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC--eEEEEEcC-CCCEEEEEECCCeEEEEeCCCC
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM--ILSLAMSP-DGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~--I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      . ..+|++.+.+.+++++++.-.+..|++||+...+.++.+.||...  |-.-+|-- +..++++|++|+.|+||+..+|
T Consensus       394 e-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg  472 (519)
T KOG0293|consen  394 E-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG  472 (519)
T ss_pred             c-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence            3 478999999999999999999999999999999999999998764  33334443 5579999999999999999999


Q ss_pred             eeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCC
Q 005913          580 RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      +++..+.||...|.+++|+| +..++|++|.||+||||-....
T Consensus       473 kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  473 KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999999999999999999 5568999999999999987653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.2e-27  Score=230.55  Aligned_cols=242  Identities=28%  Similarity=0.396  Sum_probs=216.5

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ecCccCEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QGHSGPVY  425 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~  425 (670)
                      |.-+...|.|+.||.|..+||+|+.||.|+||.+.+.                            ...+.+ ..|+..|+
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG----------------------------~ClRrFdrAHtkGvt  310 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG----------------------------QCLRRFDRAHTKGVT  310 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecc----------------------------hHHHHhhhhhccCee
Confidence            5567789999999999999999999999999998863                            233333 38999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc--
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--  503 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~--  503 (670)
                      |+.||.|+..+++++.|.++++.-+.++++++.++||.+-|+...|.++|+++++++.||+|++|+..+..++.+++.  
T Consensus       311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~  390 (508)
T KOG0275|consen  311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG  390 (508)
T ss_pred             EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988874  


Q ss_pred             cCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecC---CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGH---RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       504 ~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      ...+|+.+-.-| +...++++....+|++.++ .|+.++.|...   .+...+.+.||.|.++++.+.|+.++.|...+|
T Consensus       391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG  469 (508)
T KOG0275|consen  391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG  469 (508)
T ss_pred             CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence            345677776666 4568888889999999997 58888888642   356778889999999999999999999999999


Q ss_pred             eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      +....+..|...|..++.+|..+.|++-+.||.+++|.
T Consensus       470 ~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  470 KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999999999999999999995

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.2e-28  Score=241.33  Aligned_cols=273  Identities=18%  Similarity=0.352  Sum_probs=232.9

Q ss_pred             eecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          347 FINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +.+|.++|.|++=+|.. ..+|+|+.||.|+|||+..                            ......+..|.+.|.
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq----------------------------R~~~~~f~AH~G~V~  113 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ----------------------------RECIRTFKAHEGLVR  113 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhh----------------------------hhhhheeecccCcee
Confidence            47899999999999987 8899999999999999975                            345677889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      +|++..  ..+++++.|.+|+.|.+.. ..+.++.+ ...+.++.-+..+..|+|||.  .|.|||.....|+..+.-..
T Consensus       114 Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~  187 (433)
T KOG0268|consen  114 GICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA  187 (433)
T ss_pred             eEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCC
Confidence            999986  7789999999999999885 46666664 445778888878888999986  59999999999999999888


Q ss_pred             CCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeE
Q 005913          506 SDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVT  583 (670)
Q Consensus       506 ~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~  583 (670)
                      ..|.++.|+|... .|++|.+|+.|.+||++++.++....- ...-..|+|+|.+-.+++|++|..++.||++.- .++.
T Consensus       188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~  266 (433)
T KOG0268|consen  188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLN  266 (433)
T ss_pred             CceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccch
Confidence            9999999999765 556677999999999999998876642 344578999998888999999999999999864 5677


Q ss_pred             EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC-CCCCeEEEEEecCCcEEE
Q 005913          584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFA  662 (670)
Q Consensus       584 ~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fs~~~~~La  662 (670)
                      ...+|.+.|.+++|||.|+-+++||.|.+|+||.+..+..-               ..+.+ .-..|.+|.||.|.+++.
T Consensus       267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR---------------diYhtkRMq~V~~Vk~S~Dskyi~  331 (433)
T KOG0268|consen  267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR---------------DIYHTKRMQHVFCVKYSMDSKYII  331 (433)
T ss_pred             hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcch---------------hhhhHhhhheeeEEEEeccccEEE
Confidence            78899999999999999999999999999999999875421               11222 235799999999999999


Q ss_pred             EeeCCCC
Q 005913          663 AGALSKT  669 (670)
Q Consensus       663 ~gs~dgs  669 (670)
                      +||+|++
T Consensus       332 SGSdd~n  338 (433)
T KOG0268|consen  332 SGSDDGN  338 (433)
T ss_pred             ecCCCcc
Confidence            9999986

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3e-27  Score=227.93  Aligned_cols=246  Identities=23%  Similarity=0.395  Sum_probs=210.9

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      .|.+..|.+.|+|++.+  +.++|+|+.|-+|+|||+..                            ......+..|.+.
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k----------------------------~~qlg~ll~Hags   85 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK----------------------------RKQLGILLSHAGS   85 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccc----------------------------hhhhcceeccccc
Confidence            45778899999999996  89999999999999999975                            2344556779999


Q ss_pred             EEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          424 VYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       424 V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      |+++.|.++-.  .|++|+.||.|.+|+...+.++..+++|.+.|+.++.+|.|+.-++.+.|+.++.|++-+++.-...
T Consensus        86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~  165 (362)
T KOG0294|consen   86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL  165 (362)
T ss_pred             eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence            99999998775  8999999999999999999999999999999999999999999999999999999999888766555


Q ss_pred             cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      .-. .....+.|+|.|.+++.++.+ .|-+|.+.+....+.+.. ...+.|+.|- ++..|++|++|+.|.+||..+..+
T Consensus       166 ~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~  241 (362)
T KOG0294|consen  166 NLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP  241 (362)
T ss_pred             ccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence            422 233449999999999988766 488999887766655443 2456677765 567899999999999999999999


Q ss_pred             eEEeeCCCcceEEEEE--cCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          582 VTPLMGHTSCVWTLAY--SCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~--s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      ...+.+|...|.++.+  .|++.+|+|+|+||.|+|||++...+
T Consensus       242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence            9999999999999884  56789999999999999999988643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.3e-27  Score=261.75  Aligned_cols=266  Identities=23%  Similarity=0.411  Sum_probs=223.1

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +...|.+.|+|+.|||||++||+|+.|+.|.||.......... ....+         ........+.+..+.+|.+.|.
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~-fgs~g---------~~~~vE~wk~~~~l~~H~~DV~  133 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTV-FGSTG---------GAKNVESWKVVSILRGHDSDVL  133 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccc-ccccc---------cccccceeeEEEEEecCCCccc
Confidence            5678889999999999999999999999999999874110000 00000         0001123567888999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      .++|+|++.+|++++.|++|.+|+..+...+.++.+|.+.|..+.|.|-|+|||+-+.|++|++|++.+....+.+.++.
T Consensus       134 Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  134 DVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             eeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999988877777776554


Q ss_pred             C------CeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-----CCC----------
Q 005913          506 S------DVDCVRWHINCNYIATGSS----DKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-----DGR----------  560 (670)
Q Consensus       506 ~------~v~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-----~g~----------  560 (670)
                      .      .+..+.|+|||.+|+++..    -.++.|.+-.+.+.-..+.||.+++.+++|+|     ...          
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence            3      4678999999999998542    34788999888888889999999999999998     111          


Q ss_pred             --EEEEEECCCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          561 --YMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       561 --~l~sg~~dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                        .+|+|+.|++|.||.....+++..+.. ...+|..++|+|||..|+.+|.||+|.+..+...
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence              678899999999999988888765542 3578999999999999999999999999998764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.4e-27  Score=239.30  Aligned_cols=264  Identities=27%  Similarity=0.424  Sum_probs=218.2

Q ss_pred             CCceeEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913          339 LPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (670)
Q Consensus       339 ~ps~~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (670)
                      .+.+.....+.|.+.|+.+..-|. ..++|+++..+.|.|||..+......                  ..+....-..+
T Consensus       112 ~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~------------------~~~~~~Pdl~L  173 (422)
T KOG0264|consen  112 SGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK------------------ASGECRPDLRL  173 (422)
T ss_pred             ccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc------------------ccccCCCceEE
Confidence            345556667889999999999885 56778889999999999875322111                  00123445678


Q ss_pred             ecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-------eeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEE
Q 005913          418 QGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR  488 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~  488 (670)
                      .||.+.-++++|++... .|++|+.|++|.+||+....       ....+.+|...|.+++|++ +...|++++.|+.+.
T Consensus       174 ~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~  253 (422)
T KOG0264|consen  174 KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM  253 (422)
T ss_pred             EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence            89999899999999765 78999999999999997543       3567889999999999999 667899999999999


Q ss_pred             EEECC--CCceeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCC-CCEEE
Q 005913          489 IWSMD--RIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMA  563 (670)
Q Consensus       489 lwd~~--~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~-g~~l~  563 (670)
                      |||++  +.++.....+|.+.|.|++|+| ++..||+|+.|++|.+||+|+- +++..+.+|...|.++.|||+ ...||
T Consensus       254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA  333 (422)
T KOG0264|consen  254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA  333 (422)
T ss_pred             EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence            99999  6677778889999999999998 5677889999999999999974 578889999999999999995 56889


Q ss_pred             EEECCCeEEEEeCCCC--------------eeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCC
Q 005913          564 SGDEDGTIMMWDLASG--------------RCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTT  620 (670)
Q Consensus       564 sg~~dg~I~iwDl~~~--------------~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~  620 (670)
                      +++.|+.+.+||+..-              +++..-.||+..|..++|+|+.. .|+|.+.|+.+.||....
T Consensus       334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9999999999999642              22345568999999999999766 577888999999999864

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.2e-26  Score=251.37  Aligned_cols=233  Identities=16%  Similarity=0.219  Sum_probs=192.9

Q ss_pred             eecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +.+|.+.|++++|+| ++++||+|+.||+|+||++.......                     ........+.+|...|.
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---------------------~~~~~l~~L~gH~~~V~  129 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---------------------NISDPIVHLQGHTKKVG  129 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---------------------ccCcceEEecCCCCcEE
Confidence            578899999999999 89999999999999999987521100                     01124566889999999


Q ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       426 ~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      +++|+|++ ++|++|+.|++|+|||+.++..+..+.+|...|.+++|+|+|.+|++++.|++|++||+++++.+..+.+|
T Consensus       130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence            99999986 68999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             CCC-eeEEEEcCCCCEEEEEE----cCCcEEEEECCCCc-EEEEEecC-CCCeEEEEEcCCCCEEEEEE-CCCeEEEEeC
Q 005913          505 LSD-VDCVRWHINCNYIATGS----SDKTVRLWDVSSGE-CVRIFIGH-RSMILSLAMSPDGRYMASGD-EDGTIMMWDL  576 (670)
Q Consensus       505 ~~~-v~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~-~~~~~~~h-~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl  576 (670)
                      .+. +..+.|++++..+++++    .|+.|++||+++.. ++.....+ ...+....|++++++|++|+ .||.|++||+
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            765 45678999888887754    47899999998754 34333323 34566678999999999887 5999999999


Q ss_pred             CCCeeeEEeeC-CCcceEEEEEcCC
Q 005913          577 ASGRCVTPLMG-HTSCVWTLAYSCE  600 (670)
Q Consensus       577 ~~~~~~~~~~~-h~~~V~sl~~s~~  600 (670)
                      .++..+..... +..++..++|.|.
T Consensus       290 ~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        290 MNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             eCCceEEEeeccCCCCCcceEeccc
Confidence            99987766543 4456788888874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=9.2e-27  Score=254.57  Aligned_cols=260  Identities=27%  Similarity=0.493  Sum_probs=232.2

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+....-...-.+.+|.++|.+++|..-+.+|++|+.|.+++|||+.+                          
T Consensus       227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--------------------------  280 (537)
T KOG0274|consen  227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--------------------------  280 (537)
T ss_pred             CceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--------------------------
Confidence            345567776555555445999999999999998889999999999999999775                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                        +.....+.+|.+.|.++...  ...+++||.|.+|++|++.++..+..+.+|..+|.++..+  +.++++|+.|++|+
T Consensus       281 --g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~  354 (537)
T KOG0274|consen  281 --GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVK  354 (537)
T ss_pred             --CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEE
Confidence              45677888999999998886  5678889999999999999999999999999999999997  88999999999999


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      +||+.+++++..+.+|...|.++.+.+. +.+++|+.|++|++||++++ +++..+.+|..-+.++.+.  +++|++++.
T Consensus       355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~a  431 (537)
T KOG0274|consen  355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSA  431 (537)
T ss_pred             EEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccc
Confidence            9999999999999999999999988665 89999999999999999999 9999999999988766654  789999999


Q ss_pred             CCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccc
Q 005913          568 DGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~  625 (670)
                      ||.|++||..+++++..+.+ |.+.|+.+++.  ...+++++.||++++||+.++....
T Consensus       432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence            99999999999999999998 67899999886  4679999999999999999987654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.3e-27  Score=238.90  Aligned_cols=244  Identities=21%  Similarity=0.346  Sum_probs=212.3

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +......|.+++|-.||++||+|...|.|+|||+.+                            ...++.+.+|+.+|..
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----------------------------r~iLR~~~ah~apv~~  115 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----------------------------RVILRQLYAHQAPVHV  115 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----------------------------HHHHHHHhhccCceeE
Confidence            445567899999999999999999999999999653                            3456778899999999


Q ss_pred             EEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC-ceeEEecc
Q 005913          427 ASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAG  503 (670)
Q Consensus       427 l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~  503 (670)
                      +.|+|.++ .+++|+.|+.+++||+.+......+.+|+..|.|.+|+| +++.++|||.||+|++||++.. ..+..+. 
T Consensus       116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-  194 (487)
T KOG0310|consen  116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-  194 (487)
T ss_pred             EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-
Confidence            99999765 677899999999999998887668899999999999999 5678999999999999999876 5555554 


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                      |..+|..+.+-|.|..|++++ ...|++||+.+|.. +..+..|...|+|+++..++..|++|+-||.+++||+.+.+.+
T Consensus       195 hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv  273 (487)
T KOG0310|consen  195 HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV  273 (487)
T ss_pred             CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence            889999999999999999986 56899999996554 4445559999999999999999999999999999999888888


Q ss_pred             EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      ..+. ..++|.+++.+|+++.++.|..||.+.+-+....
T Consensus       274 ~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  274 HSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             Eeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence            7775 6689999999999999999999999888755443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=5.7e-27  Score=247.96  Aligned_cols=263  Identities=25%  Similarity=0.426  Sum_probs=228.4

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+.+|+... ..|..|+..  +-+.|..|-|.++++++|...|.+.+||+..                          
T Consensus       393 ~~SikiWn~~t-~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS--------------------------  443 (888)
T KOG0306|consen  393 GESIKIWNRDT-LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS--------------------------  443 (888)
T ss_pred             CCcEEEEEccC-cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh--------------------------
Confidence            34566665432 223334332  3799999999999999999999999999874                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CceeEEee-------CCCccEeEEEEecCCC
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-----NANLVCYK-------GHNYPVWDVQFNPQGH  476 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~-------~h~~~V~~l~~sp~g~  476 (670)
                        ...+.....|.+.|++++.+||+..+++||.|.+|++||...     +...+.++       .-...|.|+.+||||.
T Consensus       444 --~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  444 --ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             --hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence              123444568999999999999999999999999999999642     11111111       1346799999999999


Q ss_pred             EEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEc
Q 005913          477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS  556 (670)
Q Consensus       477 ~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s  556 (670)
                      +++++--|.+|++|-+++.+-.-.+.||.-+|.||..+|+++.++||+.|+.|++|-+.=|.|-+.+.+|...|+++.|-
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL  601 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence            99999999999999999999888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       557 p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      |....++++|.||.|+-||-.+-..+..+.+|...|++++.+|+|.+++++|.|.+|++|.-....
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence            999999999999999999999999999999999999999999999999999999999999976643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.6e-26  Score=243.76  Aligned_cols=268  Identities=24%  Similarity=0.346  Sum_probs=230.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      .+-+.|| ..+.||+| ....|.+|+....                            ........+...|+++.|+++|
T Consensus       180 ~nlldWs-s~n~laVa-lg~~vylW~~~s~----------------------------~v~~l~~~~~~~vtSv~ws~~G  229 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVA-LGQSVYLWSASSG----------------------------SVTELCSFGEELVTSVKWSPDG  229 (484)
T ss_pred             hhHhhcc-cCCeEEEE-ecceEEEEecCCC----------------------------ceEEeEecCCCceEEEEECCCC
Confidence            4456788 56678888 4567999997642                            1222233347899999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecccCCCeeEE
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSDVDCV  511 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~-~~~~~~~v~~v  511 (670)
                      .+|++|..+|.|.|||....+.+..+.+ |...|-+++|.  +..+.+|+.|+.|..+|++..+.... +.+|...|..+
T Consensus       230 ~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL  307 (484)
T KOG0305|consen  230 SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL  307 (484)
T ss_pred             CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence            9999999999999999999999999998 99999999998  67899999999999999998766555 88999999999


Q ss_pred             EEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEE--ECCCeEEEEeCCCCeeeEEeeCC
Q 005913          512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASG--DEDGTIMMWDLASGRCVTPLMGH  588 (670)
Q Consensus       512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg--~~dg~I~iwDl~~~~~~~~~~~h  588 (670)
                      +|+++++++|+|+.|+.+.|||.....++..+..|.+.|.+++|+| ....||+|  +.|+.|++||..+|..+..+. -
T Consensus       308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-t  386 (484)
T KOG0305|consen  308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-T  386 (484)
T ss_pred             EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-c
Confidence            9999999999999999999999988899999999999999999999 56688886  479999999999999887764 3


Q ss_pred             CcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          589 TSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       589 ~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      .+.|.+|.|++..+-|+++.  .++.|.||++.+.               ..+..+.+|...|..++++|+|..+++|+.
T Consensus       387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~  451 (484)
T KOG0305|consen  387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---------------KLVAELLGHTSRVLYLALSPDGETIVTGAA  451 (484)
T ss_pred             CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---------------ceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence            46799999999887666553  5678999999874               346678899999999999999999999999


Q ss_pred             CCC
Q 005913          667 SKT  669 (670)
Q Consensus       667 dgs  669 (670)
                      |.|
T Consensus       452 DET  454 (484)
T KOG0305|consen  452 DET  454 (484)
T ss_pred             cCc
Confidence            875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1.7e-26  Score=218.02  Aligned_cols=234  Identities=28%  Similarity=0.390  Sum_probs=209.8

Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~  495 (670)
                      .++||..+++.+.++.+|++|.+|+.|.++.+|-...++.+-+|.||.+.|||+....+..++++|+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46799999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             ceeEEecccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECC-------CCcEEEEEecCCCCeEEEEEcCCCCEEE
Q 005913          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~-------~~~~~~~~~~h~~~I~~l~~sp~g~~l~  563 (670)
                      +.+..+. ...+|..+.|+++|++++..+.+     +.|.++|++       ...+...+..+...++.+.|+|-+.+|+
T Consensus        85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            9999887 45889999999999999887654     579999998       4566777888889999999999999999


Q ss_pred             EEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913          564 SGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL  642 (670)
Q Consensus       564 sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  642 (670)
                      +|..||.|.+||+++|. .+.....|...|+.++++++..++++++.|.+-++||+.+.+               .++++
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~---------------v~Kty  228 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE---------------VLKTY  228 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee---------------eEEEe
Confidence            99999999999999985 455567899999999999999999999999999999998854               34555


Q ss_pred             CCCCCCeEEEEEecCCcEEEEeeC
Q 005913          643 PTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       643 ~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      .+ ..||++.+++|-...++.|+-
T Consensus       229 ~t-e~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  229 TT-ERPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             ee-cccccceecccccceEEecCC
Confidence            44 469999999998777776654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=206.18  Aligned_cols=258  Identities=22%  Similarity=0.320  Sum_probs=216.9

Q ss_pred             CCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (670)
Q Consensus       338 ~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (670)
                      ..|++.+..-..|.+.|.|.+|||+|.++|+|+.|.+|++.-.+......+                       ..-..+
T Consensus        76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~-----------------------g~dle~  132 (350)
T KOG0641|consen   76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT-----------------------GHDLEF  132 (350)
T ss_pred             CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc-----------------------Ccceee
Confidence            446777767778889999999999999999999999999988764322211                       122346


Q ss_pred             ecCccCEEEEEEcCC----CCEEEEEe-CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          418 QGHSGPVYSASFSPL----GDFILSSS-ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~----~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      .-|.+.|..++|-.+    +..|++++ .|..|++-|..+++....+.+|++.|.++ ++-+|-.|++|+.|.+|++||+
T Consensus       133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdl  211 (350)
T KOG0641|consen  133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDL  211 (350)
T ss_pred             eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEee
Confidence            679999999999653    34666654 57788888999999999999999999765 4447889999999999999999


Q ss_pred             CCCceeEEecc-------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          493 DRIQPLRIMAG-------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       493 ~~~~~~~~~~~-------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      +-..++..+..       ..+.|.+++..|.|+.|++|..|..+.+||++.++.++.|..|...|.|+.|||...|+++|
T Consensus       212 rv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~  291 (350)
T KOG0641|consen  212 RVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC  291 (350)
T ss_pred             eccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence            98888877642       23568999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCeEEEEeCCCC----eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          566 DEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       566 ~~dg~I~iwDl~~~----~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      +.|..|++-|+...    -++.....|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999998632    2334455799999999999999999999999999999764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-27  Score=247.89  Aligned_cols=239  Identities=22%  Similarity=0.396  Sum_probs=213.3

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe
Q 005913          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (670)
Q Consensus       361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s  440 (670)
                      |.+++|.+|+.||.|++|+.........                      ......+..|+..|..+....+++.|+++|
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s----------------------~~~~asme~HsDWVNDiiL~~~~~tlIS~S   92 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPS----------------------TPYIASMEHHSDWVNDIILCGNGKTLISAS   92 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcc----------------------cchhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence            5678899999999999999875221110                      113445678999999999999999999999


Q ss_pred             CCCeEEEEeCCCC--ceeEEeeCCCccEeEEEE-ecCCCEEEEEECCCcEEEEECCCCce----------eEEec-ccCC
Q 005913          441 ADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQF-NPQGHYFASSSHDRTARIWSMDRIQP----------LRIMA-GHLS  506 (670)
Q Consensus       441 ~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~-sp~g~~l~s~s~dg~v~lwd~~~~~~----------~~~~~-~~~~  506 (670)
                      .|.+|++|+....  -+..++..|..-|.|+++ .++...+|+||-|+.|.+||++++..          ...+. |+..
T Consensus        93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            9999999999877  577788899999999999 77889999999999999999997622          22233 7888


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      .|.+++.+++|..|++|+..+.+++||.++++.+..+.||+..|.++..++||..+++++.||+|++||+...+|+.++.
T Consensus       173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       587 ~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .|...|+++..+|+=..+++|+.||.|..=|+.+.
T Consensus       253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999999999999999885

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.7e-26  Score=222.01  Aligned_cols=281  Identities=22%  Similarity=0.378  Sum_probs=236.6

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+.+|.++|+.++.......+.+++.|.+-+||.+..                            +..+..+.||.+.|+
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es----------------------------g~CL~~Y~GH~GSVN  194 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES----------------------------GACLATYTGHTGSVN  194 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeecc----------------------------ccceeeeccccccee
Confidence            4678999999999988888999999999999999986                            456778899999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeC------CC----------------------------------CceeEEeeCCCcc
Q 005913          426 SASFSPLGDFILSSSADTTIRLWST------KL----------------------------------NANLVCYKGHNYP  465 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~------~~----------------------------------~~~~~~~~~h~~~  465 (670)
                      ++.|++.+.+++++|.|++-.||..      ..                                  ..++..+.+|...
T Consensus       195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v  274 (481)
T KOG0300|consen  195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV  274 (481)
T ss_pred             eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc
Confidence            9999999999999999999999961      10                                  0134567889999


Q ss_pred             EeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEe
Q 005913          466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFI  544 (670)
Q Consensus       466 V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~  544 (670)
                      |.+..|...|+.+++++.|++..+||++++.++..+.||....+.++-||..+++++.+.|.+.++||++. -..+..|.
T Consensus       275 V~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  275 VSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             eEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999984 35688999


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       545 ~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +|...|+++.|..+. .+++|++|.+|++||+++.+ ++.+++ -.+++..++.+..+.+|+.--.+..|++||+.....
T Consensus       355 GHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl  432 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL  432 (481)
T ss_pred             ccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence            999999999999764 68899999999999998764 566665 456889999998888999999999999999987432


Q ss_pred             ccccccccCCcccccccccCCCCCCeEEEEEecCCc--EEEEeeCC
Q 005913          624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL--LFAAGALS  667 (670)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~--~La~gs~d  667 (670)
                      .. .          +-..-.+|..-|.|++|..+-.  -|.++++|
T Consensus       433 aR-l----------PrtsRqgHrRMV~c~AW~eehp~cnLftcGFD  467 (481)
T KOG0300|consen  433 AR-L----------PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD  467 (481)
T ss_pred             cc-C----------CcccccccceeeeeeeccccCccccccccccc
Confidence            10 0          0113346777899999975432  24455554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=5.1e-27  Score=219.26  Aligned_cols=247  Identities=21%  Similarity=0.350  Sum_probs=219.3

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      =||.+|.+.|++..++.+....|++..|-+-+|||.-+...                            +. --.|..-|
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde----------------------------lh-sf~hkhiv  103 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE----------------------------LH-SFEHKHIV  103 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh----------------------------hh-hhhhhhee
Confidence            37999999999999999999999999999999999764211                            11 12478899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      .+++|+.|.++|++|+.+..+||||++..+ ....+.+|.+.|..+.|....+.|++.+.|++||+||.+++..+..+. 
T Consensus       104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-  182 (334)
T KOG0278|consen  104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-  182 (334)
T ss_pred             eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-
Confidence            999999999999999999999999998764 467789999999999999988999999999999999999999998887 


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      ...+|+++..+++|.+|.++ ..+.|.+||..+...+..+.. ...|.+..++|+...+++|+.|+.++.||..+|..+.
T Consensus       183 ~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~  260 (334)
T KOG0278|consen  183 FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG  260 (334)
T ss_pred             cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence            45789999999999887765 467899999999988887754 3568999999999999999999999999999999998


Q ss_pred             Ee-eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          584 PL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       584 ~~-~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      .+ .+|-++|.++.|+|+|...++||.||+|++|....++.
T Consensus       261 ~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  261 SYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            86 89999999999999999999999999999999877654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.5e-25  Score=214.48  Aligned_cols=267  Identities=19%  Similarity=0.271  Sum_probs=217.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ...|+.+.|+|.++.|++++.||++++|+....                             ..+..-.|.+++.+++|.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-----------------------------~l~~~~~~~~plL~c~F~   63 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-----------------------------SLKLKFKHGAPLLDCAFA   63 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-----------------------------hhhhheecCCceeeeecc
Confidence            567999999999999999999999999998752                             223334588999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeE
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~  510 (670)
                      + ...+++|+.||.|+.+|+.++.... +..|..+|.|+.+++....+++||+|++|++||.+.......+.. ...|.|
T Consensus        64 d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~  140 (323)
T KOG1036|consen   64 D-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC  140 (323)
T ss_pred             C-CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence            6 5678999999999999999775544 556999999999999888999999999999999997555555543 347887


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC----eeeEE
Q 005913          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----RCVTP  584 (670)
Q Consensus       511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~--~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~----~~~~~  584 (670)
                      +..  .++.|++|+.|..|.+||+++.......  ..-.-.+.|+++-|++.-.++++-||+|.+=.+...    ..-..
T Consensus       141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya  218 (323)
T KOG1036|consen  141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA  218 (323)
T ss_pred             Eec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence            765  6889999999999999999986554322  223457899999999888999999999998777655    23334


Q ss_pred             eeCCC---------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913          585 LMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS  655 (670)
Q Consensus       585 ~~~h~---------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs  655 (670)
                      |+.|.         -+|.+++|+|-...|+||+.||.|.+||..+.+.               +..+....+.|.+++|+
T Consensus       219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr---------------l~q~~~~~~SI~slsfs  283 (323)
T KOG1036|consen  219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR---------------LKQLAKYETSISSLSFS  283 (323)
T ss_pred             EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh---------------hhhccCCCCceEEEEec
Confidence            55553         3799999999989999999999999999988643               44555557789999999


Q ss_pred             cCCcEEEEeeC
Q 005913          656 RRNLLFAAGAL  666 (670)
Q Consensus       656 ~~~~~La~gs~  666 (670)
                      .+|.+||+|+.
T Consensus       284 ~dG~~LAia~s  294 (323)
T KOG1036|consen  284 MDGSLLAIASS  294 (323)
T ss_pred             cCCCeEEEEec
Confidence            99999999875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3e-26  Score=247.33  Aligned_cols=232  Identities=24%  Similarity=0.418  Sum_probs=191.1

Q ss_pred             cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------------C-------------
Q 005913          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--------------------------------N-------------  453 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~--------------------------------~-------------  453 (670)
                      .|.+.|+++.||+||+|||+|+.||.|+||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            8999999999999999999999999999997654                                0             


Q ss_pred             ---------------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcC-CC
Q 005913          454 ---------------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NC  517 (670)
Q Consensus       454 ---------------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~  517 (670)
                                     +++..|.||...|.++.||.++ +|++++.|.||++|++....++..|. |..-|+||+|+| |.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence                           1123467899999999999665 89999999999999999999999997 999999999999 67


Q ss_pred             CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee--CC------C
Q 005913          518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM--GH------T  589 (670)
Q Consensus       518 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~--~h------~  589 (670)
                      +|+++|+-||.||||++...+.+.-. .-..-|++++|+|||++.+.|+.+|.+++|+....+....+.  .|      .
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            99999999999999999877766543 444789999999999999999999999999998776665442  11      2


Q ss_pred             cceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC--CCCeEEEEEecCCcEEEEeeC
Q 005913          590 SCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK--STPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       590 ~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~V~~l~fs~~~~~La~gs~  666 (670)
                      ..|+.+.|.|. ...+++.+.|..|||+|......+               ..|.+.  ...-....|+.+|+++++|+.
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv---------------~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se  566 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV---------------HKFKGFRNTSSQISASFSSDGKHIVSASE  566 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh---------------hhhcccccCCcceeeeEccCCCEEEEeec
Confidence            27999999874 346778889999999998664332               222221  223456689999999999997


Q ss_pred             CC
Q 005913          667 SK  668 (670)
Q Consensus       667 dg  668 (670)
                      |.
T Consensus       567 Ds  568 (712)
T KOG0283|consen  567 DS  568 (712)
T ss_pred             Cc
Confidence            74

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=3.4e-25  Score=243.01  Aligned_cols=218  Identities=21%  Similarity=0.321  Sum_probs=180.9

Q ss_pred             EeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC--------ceeEEecccCCCee
Q 005913          439 SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI--------QPLRIMAGHLSDVD  509 (670)
Q Consensus       439 ~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~--------~~~~~~~~~~~~v~  509 (670)
                      |+.++.|++|+......+..+.+|..+|++++|+|+ +.+|++|+.||+|++||+.++        .++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            667899999999887788889999999999999996 789999999999999999753        23456789999999


Q ss_pred             EEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC
Q 005913          510 CVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH  588 (670)
Q Consensus       510 ~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h  588 (670)
                      +++|+|++..+ ++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..+.+|
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            99999998765 688999999999999998877775 5678999999999999999999999999999999999999999


Q ss_pred             CcceEE-----EEEcCCCCEEEEEECCC----cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913          589 TSCVWT-----LAYSCEGSLLASGSADC----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  659 (670)
Q Consensus       589 ~~~V~s-----l~~s~~g~~l~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~  659 (670)
                      .+.+.+     ..|++++.+|++++.|+    +|+|||+.......            ....+....+.+......++|.
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl------------~~~~ld~~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL------------VTMSIDNASAPLIPHYDESTGL  276 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce------------EEEEecCCccceEEeeeCCCCC
Confidence            876543     34568999999988774    79999998643211            1123344455555666677799


Q ss_pred             EEEEeeCCCC
Q 005913          660 LFAAGALSKT  669 (670)
Q Consensus       660 ~La~gs~dgs  669 (670)
                      ++++|+.|++
T Consensus       277 l~lsGkGD~t  286 (568)
T PTZ00420        277 IYLIGKGDGN  286 (568)
T ss_pred             EEEEEECCCe
Confidence            9999998875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=4.9e-26  Score=239.44  Aligned_cols=270  Identities=23%  Similarity=0.430  Sum_probs=227.9

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+.+|...|..+++.++ ..+++|+.||++++|+-...                          .......+.+|.+-|.
T Consensus         9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~--------------------------~~l~~~~~~~~~g~i~   61 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGK--------------------------QYLETHAFEGPKGFIA   61 (745)
T ss_pred             EeccCccchheeEecCC-eEEeecCCCCceeeeeccCc--------------------------ccccceecccCcceee
Confidence            56788889988887654 47888999999999996431                          1123345667778777


Q ss_pred             E-EEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913          426 S-ASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       426 ~-l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      + +++.+ ++-.|++|+.|++|.+|...+..++..+++|...|+++....++. +++||.|.++++|...  +....+.+
T Consensus        62 ~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~g  138 (745)
T KOG0301|consen   62 NSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQG  138 (745)
T ss_pred             ccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCC
Confidence            7 88876 334599999999999999999999999999999999999888887 9999999999999864  45666899


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      |...|.+++.-|.+ .++||+.|++|++|.  .++++++|.+|...|+.+++-|++ .+++++.||.|+.|++ +|.++.
T Consensus       139 H~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~  213 (745)
T KOG0301|consen  139 HTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLL  213 (745)
T ss_pred             cchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceee
Confidence            99999999998887 899999999999997  488999999999999999999875 5779999999999998 899999


Q ss_pred             EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913          584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       584 ~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~  663 (670)
                      ++.+|++-|++++...++..+++++.|++++||+....                 ...+.-..+.|+++.+-++|.+ ++
T Consensus       214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~-----------------~q~I~lPttsiWsa~~L~NgDI-vv  275 (745)
T KOG0301|consen  214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDEC-----------------VQVITLPTTSIWSAKVLLNGDI-VV  275 (745)
T ss_pred             eeeccceEEEEEEecCCCCeEEEecCCceEEEeecCce-----------------EEEEecCccceEEEEEeeCCCE-EE
Confidence            99999999999998888999999999999999997632                 2233333457999999999985 45


Q ss_pred             eeCCC
Q 005913          664 GALSK  668 (670)
Q Consensus       664 gs~dg  668 (670)
                      |+.||
T Consensus       276 g~SDG  280 (745)
T KOG0301|consen  276 GGSDG  280 (745)
T ss_pred             eccCc
Confidence            56665

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.3e-26  Score=215.39  Aligned_cols=237  Identities=23%  Similarity=0.358  Sum_probs=209.1

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEE
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWS  491 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd  491 (670)
                      +.+.+|.+.|.+++|+.+|..|++|+.|+++.+|++.......  .+.+|...|-.++|+| +...|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5677899999999999999999999999999999998765443  4678999999999998 677899999999999999


Q ss_pred             CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                      ++.+++...+....+.+ -+.|+|+|+++++|+.|..|.+.|.++.+.+.... ....+..++|+-++.+++.....|.|
T Consensus        94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV  171 (313)
T ss_pred             eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence            99999998887554444 57899999999999999999999999988876654 34567788999888888877778999


Q ss_pred             EEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913          572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS  651 (670)
Q Consensus       572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  651 (670)
                      .|.....-+++..+.+|.....++.|+|+|+++|+|+.|..+.+||+...               -++..++.+.=||..
T Consensus       172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---------------iC~R~isRldwpVRT  236 (313)
T KOG1407|consen  172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---------------ICERCISRLDWPVRT  236 (313)
T ss_pred             EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---------------hhheeeccccCceEE
Confidence            99999999999999999999999999999999999999999999998763               345677778889999


Q ss_pred             EEEecCCcEEEEeeCCC
Q 005913          652 LQFSRRNLLFAAGALSK  668 (670)
Q Consensus       652 l~fs~~~~~La~gs~dg  668 (670)
                      ++||.+|++||+||.|-
T Consensus       237 lSFS~dg~~lASaSEDh  253 (313)
T KOG1407|consen  237 LSFSHDGRMLASASEDH  253 (313)
T ss_pred             EEeccCcceeeccCccc
Confidence            99999999999999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=3.7e-26  Score=219.38  Aligned_cols=256  Identities=23%  Similarity=0.374  Sum_probs=211.5

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------------ceeEEeeCCCccEeEEEEecC
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN------------------ANLVCYKGHNYPVWDVQFNPQ  474 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~------------------~~~~~~~~h~~~V~~l~~sp~  474 (670)
                      ....+..|.+++.+.+|+|||.++++||.|.+|+|.|++..                  -.++++-.|..+|.++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            44567789999999999999999999999999999998611                  134566679999999999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE---ecCCCC
Q 005913          475 GHYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSM  549 (670)
Q Consensus       475 g~~l~s~s~dg~v~lwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~---~~h~~~  549 (670)
                      ...|++|+.|++|+++|+......+-++  ....+|.++.|||.|.+|++|+...++++||+.+-+|...-   ..|.+.
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            9999999999999999998654433332  24468999999999999999999999999999998886543   368899


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      |+++.+|+.|++.++|+.||.|++||--+++|+.++. .|. ..|.+..|..+|+++.+.|.|..|++|.+.++..+...
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            9999999999999999999999999999999998885 566 57999999999999999999999999999987665433


Q ss_pred             ccc---------------------------cC-Cccc------ccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          628 EEK---------------------------SG-TNRL------RSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       628 ~~~---------------------------~~-~~~~------~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ...                           .. .-.|      +.-..--+|.+++..+.-||.+.-+.+++.|-
T Consensus       344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            110                           00 0000      01112236888999999999999999999874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=229.03  Aligned_cols=257  Identities=22%  Similarity=0.333  Sum_probs=219.3

Q ss_pred             cccceecCCCCCCce-eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          328 LRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       328 ~~~~~~l~~~~~ps~-~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      ....+++|+...... ..-++.+..++|+.+.|.+++.++++++.|+.+++|+++.                        
T Consensus       195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~------------------------  250 (459)
T KOG0288|consen  195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS------------------------  250 (459)
T ss_pred             hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc------------------------
Confidence            445677887654432 2235667778899999999999999999999999999875                        


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~  486 (670)
                          .+...++.||++.|+++.|......+++|+.|.+|++||+....|...+-. ...+.+|..+  ...+++|-.|++
T Consensus       251 ----~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  251 ----LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKK  323 (459)
T ss_pred             ----hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccc
Confidence                345677889999999999998777799999999999999998777765542 3345666665  567889999999


Q ss_pred             EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC----CCeEEEEEcCCCCEE
Q 005913          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR----SMILSLAMSPDGRYM  562 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~----~~I~~l~~sp~g~~l  562 (670)
                      |++||.+...+.+....+ +.|+++..++++..|.+++.|.++.+.|+++......+....    ...+.+.|||++.|+
T Consensus       324 vRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv  402 (459)
T KOG0288|consen  324 VRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV  402 (459)
T ss_pred             eEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence            999999999999999877 499999999999999999999999999999998887775422    347889999999999


Q ss_pred             EEEECCCeEEEEeCCCCeeeEEeeCCCc--ceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913          563 ASGDEDGTIMMWDLASGRCVTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLW  616 (670)
Q Consensus       563 ~sg~~dg~I~iwDl~~~~~~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~I~iw  616 (670)
                      ++|+.||.|+||++.++++...+.....  .|++++|+|.|..|++++.++.+.+|
T Consensus       403 aAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  403 AAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            9999999999999999999988876544  59999999999999999999999999

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.2e-27  Score=250.28  Aligned_cols=236  Identities=27%  Similarity=0.544  Sum_probs=218.6

Q ss_pred             eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~  496 (670)
                      +..|+..|.++..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.++.|++....+++|+.+|+|++||++..+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            34688889888887778899999999999999998888888899999999999999999999999999999999999999


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      .++.+.+|...+..+.|||-+.|.+.|+.|+.+.+||++...|...+.+|...+.++.|+|+|+++++|++|..++|||+
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~  183 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL  183 (825)
T ss_pred             hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                      ..|+.+..|..|.+.|.++.|+|..-++++||.|++|++||+++...               +....+....|.+++|+|
T Consensus       184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~---------------I~s~~~~~~~v~~~~fn~  248 (825)
T KOG0267|consen  184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV---------------ISSGKPETDGVRSLAFNP  248 (825)
T ss_pred             cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE---------------eeccCCccCCceeeeecC
Confidence            99999999999999999999999999999999999999999987543               334445567899999999


Q ss_pred             CCcEEEEeeCC
Q 005913          657 RNLLFAAGALS  667 (670)
Q Consensus       657 ~~~~La~gs~d  667 (670)
                      ++..+++|...
T Consensus       249 ~~~~~~~G~q~  259 (825)
T KOG0267|consen  249 DGKIVLSGEQI  259 (825)
T ss_pred             CceeeecCchh
Confidence            99999888653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=5.9e-26  Score=230.11  Aligned_cols=278  Identities=20%  Similarity=0.371  Sum_probs=230.6

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee--ecCccCE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGHSGPV  424 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V  424 (670)
                      .++|.+-|.++.+|...+++.+| ..|.|+|||+......                         ..+..+  .....-|
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k-------------------------~PvsqLdcl~rdnyi  468 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNK-------------------------SPVSQLDCLNRDNYI  468 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCC-------------------------CccccccccCcccce
Confidence            45666668888999999999999 6789999999853211                         111111  1234678


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                      .++..+|||+.|++|+.-.++.|||+........  +....-....++.+||.+..++++.||.|.|||+.+...++.|.
T Consensus       469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq  548 (705)
T KOG0639|consen  469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ  548 (705)
T ss_pred             eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc
Confidence            8999999999999999999999999987655432  33333456779999999999999999999999999999999999


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                      ||...+.||..+++|..|.||+-|.+||.||+++++.+... .....|.++..+|++.+|+.|-.++.+.+..... ...
T Consensus       549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~k  626 (705)
T KOG0639|consen  549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEK  626 (705)
T ss_pred             CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCC-ccc
Confidence            99999999999999999999999999999999999877543 2457899999999999999999999999888643 344


Q ss_pred             EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEE
Q 005913          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA  662 (670)
Q Consensus       583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La  662 (670)
                      ..+.-|.+.|.++.|++.|+++++.+.|+.+..|...-+..+...                ...++|.++..|.++++++
T Consensus       627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs----------------kE~SsVlsCDIS~ddkyIV  690 (705)
T KOG0639|consen  627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------------KESSSVLSCDISFDDKYIV  690 (705)
T ss_pred             eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec----------------cccCcceeeeeccCceEEE
Confidence            566779999999999999999999999999999998877543211                2356899999999999999


Q ss_pred             EeeCCC
Q 005913          663 AGALSK  668 (670)
Q Consensus       663 ~gs~dg  668 (670)
                      +|+-|+
T Consensus       691 TGSGdk  696 (705)
T KOG0639|consen  691 TGSGDK  696 (705)
T ss_pred             ecCCCc
Confidence            999874

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.2e-25  Score=222.90  Aligned_cols=232  Identities=27%  Similarity=0.380  Sum_probs=208.7

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      ..++++...|..+.+++|+.|.++.++|...++.+..++||...|+.+.++|+...+++++.|-.|++|...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            46778888888789999999999999999999999999999999999999999999999999999999999887777888


Q ss_pred             cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      ..|..+|+.+..||+|.||++++.||+..+.|++++.++......  .-.+++.+|+|||..|.+|..||.|+|||+.++
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence            899999999999999999999999999999999999988766542  245899999999999999999999999999999


Q ss_pred             eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  659 (670)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~  659 (670)
                      ..+..|.+|+++|..++|+.+|-+|++++.|+.|++||++......             ...++.+. +|.++.|.+.|.
T Consensus       380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k-------------t~~l~~~~-~v~s~~fD~SGt  445 (506)
T KOG0289|consen  380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK-------------TIQLDEKK-EVNSLSFDQSGT  445 (506)
T ss_pred             cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc-------------eeeccccc-cceeEEEcCCCC
Confidence            9999999999999999999999999999999999999998854321             11233333 799999999999


Q ss_pred             EEEEeeCC
Q 005913          660 LFAAGALS  667 (670)
Q Consensus       660 ~La~gs~d  667 (670)
                      +|++++.+
T Consensus       446 ~L~~~g~~  453 (506)
T KOG0289|consen  446 YLGIAGSD  453 (506)
T ss_pred             eEEeecce
Confidence            99998654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=2e-24  Score=218.29  Aligned_cols=255  Identities=20%  Similarity=0.348  Sum_probs=207.7

Q ss_pred             ceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce----------eEEeeCCCccEeEEEEec-CCCEEEE
Q 005913          413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN----------LVCYKGHNYPVWDVQFNP-QGHYFAS  480 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~----------~~~~~~h~~~V~~l~~sp-~g~~l~s  480 (670)
                      .......|.+.|+.+.+-|... .+++.+..+.|.|||......          -..+.+|...-.+++|++ ..-++++
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence            3444567999999999999776 566778889999999764322          236788988888899999 4457999


Q ss_pred             EECCCcEEEEECCCC-------ceeEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECC--CCcEEEEEecCCCCe
Q 005913          481 SSHDRTARIWSMDRI-------QPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVS--SGECVRIFIGHRSMI  550 (670)
Q Consensus       481 ~s~dg~v~lwd~~~~-------~~~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~I  550 (670)
                      |+.|++|++||+...       .+...+.+|...|..++||+-. ..+++++.|+.+.|||+|  +.++.....+|.++|
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            999999999999643       3456788999999999999854 577788999999999999  566677788999999


Q ss_pred             EEEEEcC-CCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          551 LSLAMSP-DGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       551 ~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      .|++|+| ++..||||+.|++|.+||+++- +++..+.+|...|.++.|||+ ..+|++++.|+.+.|||+..-......
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            9999999 5668889999999999999965 578899999999999999995 578999999999999999876544331


Q ss_pred             ccccCCcccccccccCCCCCCeEEEEEecCCcEEE-EeeCCC
Q 005913          628 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA-AGALSK  668 (670)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La-~gs~dg  668 (670)
                       .......+.++....+|...|..+.|+|+..+++ +.+.|+
T Consensus       356 -eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  356 -EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN  396 (422)
T ss_pred             -hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence             2223344567788889999999999999986654 445443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.8e-25  Score=227.55  Aligned_cols=242  Identities=24%  Similarity=0.383  Sum_probs=190.5

Q ss_pred             eeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EEe-eCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VCY-KGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~----~~~-~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                      -..+.+|+..|.++++.|.|-.|++||.|.+|++||+......    +.+ ......|.+++|++.|..|++.+....++
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            3567889999999999999999999999999999998854332    111 23456799999999999999999999999


Q ss_pred             EEECCCCceeEE------------ecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcE-EEEEe-----cCCCC
Q 005913          489 IWSMDRIQPLRI------------MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGEC-VRIFI-----GHRSM  549 (670)
Q Consensus       489 lwd~~~~~~~~~------------~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~-~~~~~-----~h~~~  549 (670)
                      ++|-+....+..            -+||...++|.+|||.. +.+++++.||++|+||+...+. ..++.     +..-+
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            999876544332            35899999999999965 5788999999999999986543 33332     23447


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEeCCCCee---eEEeeCCCc--ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~---~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      ++.++|+|+|.+||+|+.||.|.+||..+...   +..-.+|..  .|+|++||++|++|++-|.|+++++||+......
T Consensus       320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence            89999999999999999999999999865422   222346776  8999999999999999999999999999886543


Q ss_pred             cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      .....           -+ ...-+-+.++|||+.+++++|+.-
T Consensus       400 L~~~t-----------gL-~t~~~~tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  400 LNVRT-----------GL-PTPFPGTDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             hhhhc-----------CC-CccCCCCccccCCCceEEEecccc
Confidence            21110           11 112246788999999999999864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=219.10  Aligned_cols=278  Identities=17%  Similarity=0.271  Sum_probs=230.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      .+++|+|+.|+|...+|.+|+.||.++||.++....                          ..+..+.-...+|.+.+|
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------~~lqS~~l~~fPi~~a~f  265 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------PKLQSIHLEKFPIQKAEF  265 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------hhheeeeeccCccceeee
Confidence            457899999999999999999999999999986221                          223334445689999999


Q ss_pred             cCCCC-EEEEEeCCCeEEEEeCCCCceeEE--eeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913          430 SPLGD-FILSSSADTTIRLWSTKLNANLVC--YKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       430 sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      .|+|. .+++++.-..++.||+.+.+....  ..++ ...+..+..++++++++..|..|.|.+.-..+++.+..++ -.
T Consensus       266 ~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ie  344 (514)
T KOG2055|consen  266 APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE  344 (514)
T ss_pred             cCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ec
Confidence            99999 888999999999999987765432  2333 3357788899999999999999999999999998888887 45


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEECCCeEEEEeCCC------
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS------  578 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~------  578 (670)
                      +.|..++|+.+++.|++++.+|.|++||++...+++.+....+ .-++++.|++|.|||+|+..|.|.|||..+      
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN  424 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence            7899999999999999999999999999999999999975433 346788889999999999999999999753      


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccC---CCCCCeEEEE
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP---TKSTPVYSLQ  653 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~V~~l~  653 (670)
                      .+++..+..-...|+++.|++++++||.+|  .+..+++-.+.+.+..               ..+|   +.-+.|+|++
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF---------------sNfP~~n~~vg~vtc~a  489 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF---------------SNFPTSNTKVGHVTCMA  489 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee---------------ccCCCCCCcccceEEEE
Confidence            356777777778999999999999998887  4578999998876532               2333   3445699999


Q ss_pred             EecCCcEEEEeeCCCC
Q 005913          654 FSRRNLLFAAGALSKT  669 (670)
Q Consensus       654 fs~~~~~La~gs~dgs  669 (670)
                      |||.+-+||.|..+|-
T Consensus       490 FSP~sG~lAvGNe~gr  505 (514)
T KOG2055|consen  490 FSPNSGYLAVGNEAGR  505 (514)
T ss_pred             ecCCCceEEeecCCCc
Confidence            9999999999998873

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=7.6e-24  Score=227.00  Aligned_cols=295  Identities=21%  Similarity=0.371  Sum_probs=228.5

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ..++++|+..... ..|+|.++...|+|+.-+|--..+|+|..+|+|.|+++..                          
T Consensus       181 ~G~lql~Nvrt~K-~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~--------------------------  233 (910)
T KOG1539|consen  181 QGRLQLWNVRTGK-VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF--------------------------  233 (910)
T ss_pred             CCcEEEEEeccCc-EEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc--------------------------
Confidence            4578888866543 4678899999999999999999999999999999999875                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCc
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRT  486 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~  486 (670)
                        .+.+..++...+.|++++|..||+. +++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..
T Consensus       234 --dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS  311 (910)
T KOG1539|consen  234 --DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS  311 (910)
T ss_pred             --CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCc
Confidence              2344455544699999999999985 5677778999999998766554433 45555555556555555555555555


Q ss_pred             EEEEECCCCc----------------------------------------------------------------------
Q 005913          487 ARIWSMDRIQ----------------------------------------------------------------------  496 (670)
Q Consensus       487 v~lwd~~~~~----------------------------------------------------------------------  496 (670)
                      +++|-.+++.                                                                      
T Consensus       312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~  391 (910)
T KOG1539|consen  312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE  391 (910)
T ss_pred             eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence            5555222000                                                                      


Q ss_pred             -----ee--------------------------------------EEec-----ccCCCeeEEEEcCCCCEEEEEEcCCc
Q 005913          497 -----PL--------------------------------------RIMA-----GHLSDVDCVRWHINCNYIATGSSDKT  528 (670)
Q Consensus       497 -----~~--------------------------------------~~~~-----~~~~~v~~v~~~p~~~~l~tgs~dg~  528 (670)
                           ++                                      ..+.     .....+.+++.++.||+.+.|++.|+
T Consensus       392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~  471 (910)
T KOG1539|consen  392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT  471 (910)
T ss_pred             hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence                 00                                      0000     01245788899999999999999999


Q ss_pred             EEEEECCCCcEEEEE---ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee------------------------
Q 005913          529 VRLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC------------------------  581 (670)
Q Consensus       529 I~iwd~~~~~~~~~~---~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~------------------------  581 (670)
                      |-+|++++|-....|   ..|.++|+.++..--++.+++++.+|.+.+||..+...                        
T Consensus       472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI  551 (910)
T ss_pred             EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence            999999999888888   48999999999999999999999999999999865432                        


Q ss_pred             -----------------eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          582 -----------------VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       582 -----------------~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                                       +..+.+|.+.|++++|||||++|++++.|++|++||+.++..+               -.+ .
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI---------------D~~-~  615 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI---------------DGL-L  615 (910)
T ss_pred             hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee---------------eeE-e
Confidence                             2234589999999999999999999999999999999997643               111 2


Q ss_pred             CCCCeEEEEEecCCcEEEEeeCCC
Q 005913          645 KSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       645 ~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      -..+..++.|||+|.+||+...|.
T Consensus       616 vd~~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  616 VDSPCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             cCCcceeeEECCCCCEEEEEEecC
Confidence            356899999999999999998774

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.2e-24  Score=206.13  Aligned_cols=282  Identities=18%  Similarity=0.236  Sum_probs=211.9

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      ++.+|.+.|+|++||.||++||+++.|+.|+||++.......                       .+.++.. -.-+.-+
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-----------------------Hr~~R~n-ve~dhpT  136 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-----------------------HRCIRQN-VEYDHPT  136 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-----------------------hhHhhcc-ccCCCce
Confidence            467899999999999999999999999999999987521110                       0111111 1123457


Q ss_pred             EEEEcCCCCEEE-EEeCCCeEEEEeCCCCce------------eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          426 SASFSPLGDFIL-SSSADTTIRLWSTKLNAN------------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       426 ~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~------------~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      .+.|+||-+.++ ++-...++++|.+...+.            ...-+.|.-+|.++-....+.++++++.|..|.+|++
T Consensus       137 ~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l  216 (420)
T KOG2096|consen  137 RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL  216 (420)
T ss_pred             EEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence            789999987554 555566899997653211            1112236667777777778999999999999999999


Q ss_pred             CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC---CC-----cEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SG-----ECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~-----~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      . |+.+..+......-...+.+|+|+++++++-.--|.+|.+-   .|     ..+..+.+|...|..++||++...+++
T Consensus       217 k-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt  295 (420)
T KOG2096|consen  217 K-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT  295 (420)
T ss_pred             C-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence            8 88888888777777888999999999999999999999873   22     234567899999999999999999999


Q ss_pred             EECCCeEEEEeCCCC-------eeeEEe----eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCC
Q 005913          565 GDEDGTIMMWDLASG-------RCVTPL----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT  633 (670)
Q Consensus       565 g~~dg~I~iwDl~~~-------~~~~~~----~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~  633 (670)
                      .+.||++++||+.-.       +.++..    ....+....+..+|+|..|+.+. ..+++++..+.+.....       
T Consensus       296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~-------  367 (420)
T KOG2096|consen  296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPE-------  367 (420)
T ss_pred             EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchh-------
Confidence            999999999998522       122222    11223344899999999888765 44799999888654211       


Q ss_pred             cccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       634 ~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                             .-..|.+.|.+++|+++|+++|+++..
T Consensus       368 -------~e~~h~~~Is~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  368 -------LEDIHSTTISSISYSSDGKYIATCGDR  394 (420)
T ss_pred             -------HHHhhcCceeeEEecCCCcEEeeecce
Confidence                   123577889999999999999998763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.1e-24  Score=229.73  Aligned_cols=270  Identities=18%  Similarity=0.271  Sum_probs=225.5

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      ..|..+.+.++|.|+|.+|.+++.||.|++|+......                           ......-+...|.++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e---------------------------~P~ti~~~g~~v~~i   62 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE---------------------------EPETIDISGELVSSI   62 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc---------------------------CCchhhccCceeEEE
Confidence            35677899999999999999999999999999764100                           000111166778777


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~  507 (670)
                      +..  +.+|++|+.+++|.+|.+..++.-..+...+-++.+++|+.+|.++|.||.|-.|++.++........+.+|.++
T Consensus        63 a~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap  140 (933)
T KOG1274|consen   63 ACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP  140 (933)
T ss_pred             eec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence            765  569999999999999999988776666667789999999999999999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--------CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--------~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      |.++.|+|++++||+.+.||.|++||+.++.+..++.+-        ...+..++|+|+|..++..+.|+.|.+|+...+
T Consensus       141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW  220 (933)
T ss_pred             eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence            999999999999999999999999999998876655431        345678999999999999999999999999999


Q ss_pred             eeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913          580 RCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  657 (670)
Q Consensus       580 ~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~  657 (670)
                      .....++.  +...+..++|+|+|.|||+++.||.|.|||+++...                   ......|.+++|.|+
T Consensus       221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------------------~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-------------------HEFKRAVCCEAWKPN  281 (933)
T ss_pred             eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-------------------ccccceeEEEecCCC
Confidence            98888764  345589999999999999999999999999987321                   234456889999888


Q ss_pred             CcEEEEee
Q 005913          658 NLLFAAGA  665 (670)
Q Consensus       658 ~~~La~gs  665 (670)
                      ..-+-.-.
T Consensus       282 ~n~it~~~  289 (933)
T KOG1274|consen  282 ANAITLIT  289 (933)
T ss_pred             CCeeEEEe
Confidence            76554433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.1e-24  Score=220.43  Aligned_cols=221  Identities=28%  Similarity=0.461  Sum_probs=195.4

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC------
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD------  493 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~------  493 (670)
                      -.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+|+.|+.||.+|++||.||.|.+|++.      
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999863      


Q ss_pred             ---CCceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913          494 ---RIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       494 ---~~~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                         +.++++.+..|.-+|+.+...+.  ..++++++.|.+|++||+..|..+..+. ....+.+++.+|-++.++.|+.+
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc
Confidence               46788999999999999988754  4689999999999999999999888775 45779999999999999999999


Q ss_pred             CeEEEEeCCCC----------------eeeEEeeCCCc--ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc
Q 005913          569 GTIMMWDLASG----------------RCVTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  630 (670)
Q Consensus       569 g~I~iwDl~~~----------------~~~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  630 (670)
                      |.|.+.++...                ..+..+.+|.+  .|+|++.+-||.+|++|+.||.|+|||+.+.+        
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q--------  310 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ--------  310 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH--------
Confidence            99999987532                23455678887  99999999999999999999999999998864        


Q ss_pred             cCCcccccccccCCCCCCeEEEEEec
Q 005913          631 SGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                             +++++.+..++|+.+.+.|
T Consensus       311 -------~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  311 -------CIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             -------HHHHHhhhccccceeEeec
Confidence                   4556655677888888854

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.5e-25  Score=212.33  Aligned_cols=209  Identities=31%  Similarity=0.535  Sum_probs=190.4

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      ..+.+.||...|+.++.......+.++|.|.+-+||.++++.|+..|.||.+.|.++.|++.+..+++++.|++..||..
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence            44567899999999999888888999999999999999999999999999999999999999999999999999999962


Q ss_pred             C------C----------------------------------CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEE
Q 005913          493 D------R----------------------------------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW  532 (670)
Q Consensus       493 ~------~----------------------------------~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iw  532 (670)
                      .      .                                  ..|+..+.+|.+.|.+..|-..|..+++++.|.+-.+|
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW  299 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence            1      0                                  01566788999999999999999999999999999999


Q ss_pred             ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913          533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADC  611 (670)
Q Consensus       533 d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg  611 (670)
                      |+.+|..+..+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|++|+..|++..|..+. .+++|+.|.
T Consensus       300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDr  378 (481)
T KOG0300|consen  300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDR  378 (481)
T ss_pred             eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCc
Confidence            99999999999999999999999999999999999999999999843 4577899999999999998765 589999999


Q ss_pred             cEEEEeCCCCc
Q 005913          612 TVKLWDVTTST  622 (670)
Q Consensus       612 ~I~iwd~~~~~  622 (670)
                      +|+|||+.+..
T Consensus       379 TvKvWdLrNMR  389 (481)
T KOG0300|consen  379 TVKVWDLRNMR  389 (481)
T ss_pred             eEEEeeecccc
Confidence            99999998754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=1.5e-24  Score=228.30  Aligned_cols=252  Identities=23%  Similarity=0.404  Sum_probs=214.0

Q ss_pred             ceecCCCCCCceeE-EEeecCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          331 RVHLSSAALPSVSF-YTFINTHNGLNC-ASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       331 ~~~l~~~~~ps~~~-~t~~~~~~~V~~-l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      .+++|......... ..+.++.+-|.+ +++-+ ++-.+++|+.|++|.+|.+..                         
T Consensus        36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-------------------------   90 (745)
T KOG0301|consen   36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-------------------------   90 (745)
T ss_pred             ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-------------------------
Confidence            45666553333332 345667777777 77775 555699999999999999875                         


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v  487 (670)
                         ...+..+.||...|.|++...++. +++||.|.++++|-.  +++...+.+|+.+||.+..-|.+ .++|||.|++|
T Consensus        91 ---~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI  163 (745)
T KOG0301|consen   91 ---AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI  163 (745)
T ss_pred             ---CCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence               346678999999999999887777 999999999999987  45566689999999999999988 89999999999


Q ss_pred             EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      ++|.-  ++.+++|.+|..-|+.+++-+++ .+++++.||.|++|++ +|.++..+.+|..-|+++...+++..++++++
T Consensus       164 klWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  164 KLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             eeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence            99975  67889999999999999998764 5778889999999999 89999999999999999998889999999999


Q ss_pred             CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      |++++||+..  .+.+.+.-....||++.+-++|. +++|++||.||||.....
T Consensus       240 DrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  240 DRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             CceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence            9999999976  77788876677999999888876 778889999999998743

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.1e-25  Score=205.57  Aligned_cols=248  Identities=25%  Similarity=0.445  Sum_probs=203.7

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      ..|.+.|..+...-.|++||++++|++|+|+.+.....                         ......+.||++||..+
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-------------------------s~ll~~L~Gh~GPVwqv   62 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-------------------------SKLLAELTGHSGPVWKV   62 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-------------------------ceeeeEecCCCCCeeEE
Confidence            34566677777777899999999999999999875211                         24667899999999999


Q ss_pred             EEcC--CCCEEEEEeCCCeEEEEeCCCCce--eEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCC---cee
Q 005913          428 SFSP--LGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI---QPL  498 (670)
Q Consensus       428 ~~sp--~~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~---~~~  498 (670)
                      +|..  .|.+|++|+.||.|.||.-..++-  ...+..|...|++++|.|.  |-.|++++.||.|.+.+.+..   ...
T Consensus        63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~  142 (299)
T KOG1332|consen   63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS  142 (299)
T ss_pred             eecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence            9976  789999999999999999887643  4556679999999999994  678999999999999998754   233


Q ss_pred             EEecccCCCeeEEEEcCC---C-----------CEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCCC---
Q 005913          499 RIMAGHLSDVDCVRWHIN---C-----------NYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDG---  559 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~---~-----------~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~g---  559 (670)
                      ++...|.-.|++++|.|.   |           +.|++|+.|..|+||+..++.  .-+.+.+|.+.|+.++|.|.-   
T Consensus       143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~  222 (299)
T KOG1332|consen  143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP  222 (299)
T ss_pred             hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence            456689999999999986   4           569999999999999998763  345588999999999999953   


Q ss_pred             -CEEEEEECCCeEEEEeCCCCe---eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          560 -RYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       560 -~~l~sg~~dg~I~iwDl~~~~---~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                       .+||+++.||++.||-.+...   ....+......+++++||..|++|+.++.|+.|.+|.-..
T Consensus       223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence             489999999999999876221   1122334567899999999999999999999999997544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.4e-25  Score=231.47  Aligned_cols=224  Identities=28%  Similarity=0.482  Sum_probs=200.9

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCc------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC--ceeEEec
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNA------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI--QPLRIMA  502 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~--~~~~~~~  502 (670)
                      |.+++|++|+.||.|++|++....      .+..+..|...|.++....+++.|+++|.|-+|++|+....  -+..++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            456789999999999999987543      35677889999999999999999999999999999999876  5778888


Q ss_pred             ccCCCeeEEEE-cCCCCEEEEEEcCCcEEEEECCCCc--EEEE--------Ee-cCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913          503 GHLSDVDCVRW-HINCNYIATGSSDKTVRLWDVSSGE--CVRI--------FI-GHRSMILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       503 ~~~~~v~~v~~-~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~--------~~-~h~~~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                      .|...|.|+++ -++...+|+|+-|+.|.+||+.++.  .+..        +. ++..+|++++.++.|..|++|+..+.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            99999999999 7888999999999999999999873  2222        22 78889999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  650 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  650 (670)
                      |++||.++++.+..++||+..|..+..++||+.++++|+||+|++||+...               +++.++..|...|+
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---------------rCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---------------RCLATYIVHKEGVW  259 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---------------ceeeeEEeccCceE
Confidence            999999999999999999999999999999999999999999999999764               45778888888999


Q ss_pred             EEEEecCCcEEEEeeCCCC
Q 005913          651 SLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       651 ~l~fs~~~~~La~gs~dgs  669 (670)
                      ++..+|+-..+.+|+.||.
T Consensus       260 aL~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  260 ALQSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             EEeeCCCcceEEecCCCCc
Confidence            9999999999999999885

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.2e-23  Score=202.50  Aligned_cols=248  Identities=22%  Similarity=0.405  Sum_probs=197.1

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      .+|.+-|+|+.|.+.|+.+|+|+.|++|+|||...                        ..+..........|.+.|..+
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~------------------------~s~~W~~Ts~Wrah~~Si~rV   65 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS------------------------DSGTWSCTSSWRAHDGSIWRV   65 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccC------------------------CCCceEEeeeEEecCCcEEEE
Confidence            35667799999999999999999999999999753                        223355667788999999999


Q ss_pred             EEcC--CCCEEEEEeCCCeEEEEeCC---------CCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEEECCC
Q 005913          428 SFSP--LGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       428 ~~sp--~~~~L~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      .|.+  -|+.+|+||.|+++.||.-.         ......++......|+++.|.|  -|-.+|+++.||.+|||+.-.
T Consensus        66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence            9976  47899999999999999752         1223445666778899999999  688899999999999998643


Q ss_pred             CceeE------Eec-------ccCCCeeEEEEcCC---CCEEEEEEcC-----CcEEEEECCCC----cEEEEEecCCCC
Q 005913          495 IQPLR------IMA-------GHLSDVDCVRWHIN---CNYIATGSSD-----KTVRLWDVSSG----ECVRIFIGHRSM  549 (670)
Q Consensus       495 ~~~~~------~~~-------~~~~~v~~v~~~p~---~~~l~tgs~d-----g~I~iwd~~~~----~~~~~~~~h~~~  549 (670)
                      .-.+.      .+.       .+.....|+.|+|.   ..+|++|+.+     +.+.||....+    ..+..+.+|..+
T Consensus       146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp  225 (361)
T KOG2445|consen  146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP  225 (361)
T ss_pred             ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence            32211      111       35567889999974   4678888766     47888876533    245567799999


Q ss_pred             eEEEEEcCC----CCEEEEEECCCeEEEEeCCCC--------------------eeeEEeeCCCcceEEEEEcCCCCEEE
Q 005913          550 ILSLAMSPD----GRYMASGDEDGTIMMWDLASG--------------------RCVTPLMGHTSCVWTLAYSCEGSLLA  605 (670)
Q Consensus       550 I~~l~~sp~----g~~l~sg~~dg~I~iwDl~~~--------------------~~~~~~~~h~~~V~sl~~s~~g~~l~  605 (670)
                      |+.|+|.|+    -..||+++.|| |+||.+...                    +.+..+..|.+.|+.+.|+-.|.+|+
T Consensus       226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs  304 (361)
T KOG2445|consen  226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS  304 (361)
T ss_pred             ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence            999999995    34799999999 999998731                    23456778999999999999999999


Q ss_pred             EEECCCcEEEEeCCC
Q 005913          606 SGSADCTVKLWDVTT  620 (670)
Q Consensus       606 sgs~Dg~I~iwd~~~  620 (670)
                      +.|.||+||+|...-
T Consensus       305 StGdDG~VRLWkany  319 (361)
T KOG2445|consen  305 STGDDGCVRLWKANY  319 (361)
T ss_pred             ecCCCceeeehhhhh
Confidence            999999999997543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.8e-24  Score=216.01  Aligned_cols=239  Identities=24%  Similarity=0.438  Sum_probs=202.2

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      .|...|.|++.|+||+|||+|+.|..|.||+..+                            ...+..+.+|.+.|.+++
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t----------------------------~ehv~~~~ghr~~V~~L~  251 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT----------------------------LEHVKVFKGHRGAVSSLA  251 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcc----------------------------cchhhcccccccceeeee
Confidence            7788899999999999999999999999999886                            234455889999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe
Q 005913          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v  508 (670)
                      |-.....|+++|.|++|++|+++....+.++.+|...|.+|.-...++.+-+|+.|+++++|++.. ....++.+|.+.+
T Consensus       252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~si  330 (479)
T KOG0299|consen  252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSI  330 (479)
T ss_pred             eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCe
Confidence            998888999999999999999999999999999999999999988888888888999999999943 3445677898999


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cC-----------CCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GH-----------RSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h-----------~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      .|++|- +...+++|+.+|.|.+|++.+.+++.+.. .|           ...|++++..|...++++|+.+|.|++|-+
T Consensus       331 dcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  331 DCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             eeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence            999995 66789999999999999999988876653 11           227999999999999999999999999999


Q ss_pred             CCC----eeeEEeeCCCcceEEEEEcCCCCEEEEE-ECCCcEEEEeC
Q 005913          577 ASG----RCVTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDV  618 (670)
Q Consensus       577 ~~~----~~~~~~~~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~  618 (670)
                      ..+    .++..+. -.+.|++++|+++|..|++| +....+--|-.
T Consensus       410 ~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  410 EDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             cCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence            877    3344443 56899999999999965555 44444444543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.8e-23  Score=215.65  Aligned_cols=277  Identities=20%  Similarity=0.296  Sum_probs=229.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec-CccCEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSAS  428 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~  428 (670)
                      ...+|+|++||.+.+.||+|-.+|.|.||++...                           ......+.+ ....|-+++
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---------------------------w~~~~vi~g~~drsIE~L~   76 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---------------------------WFLEPVIHGPEDRSIESLA   76 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCC---------------------------ceeeEEEecCCCCceeeEE
Confidence            3568999999999999999999999999998741                           112233333 457899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee--EEecccCC
Q 005913          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAGHLS  506 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~--~~~~~~~~  506 (670)
                      |+ ++..|++.+.+|.|.-||+.+.+....+....++||+++.+|.+..++.||.||.+..++...++..  +.+....+
T Consensus        77 W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s  155 (691)
T KOG2048|consen   77 WA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS  155 (691)
T ss_pred             Ec-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence            99 4667888889999999999999999999999999999999999999999999998888887766544  34455678


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--------CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      .|.+++|+|++..|++|+.||.|++||+.++..+.....        ...-|.++.|-.+ ..|++|...|.|.+||...
T Consensus       156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~  234 (691)
T KOG2048|consen  156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF  234 (691)
T ss_pred             eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC
Confidence            999999999999999999999999999999988763221        1223667777655 4899999999999999999


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      +..+..+..|.+.|.+++.++++++++++|.|+.|.-|...+....           +........|...|.+++..++ 
T Consensus       235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-----------wv~~~~r~~h~hdvrs~av~~~-  302 (691)
T KOG2048|consen  235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-----------WVINSRRDLHAHDVRSMAVIEN-  302 (691)
T ss_pred             cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-----------eeeeccccCCcccceeeeeecc-
Confidence            9999999999999999999999999999999999999988776431           2223344567778999988887 


Q ss_pred             cEEEEeeCCC
Q 005913          659 LLFAAGALSK  668 (670)
Q Consensus       659 ~~La~gs~dg  668 (670)
                       .+.+|+.|.
T Consensus       303 -~l~sgG~d~  311 (691)
T KOG2048|consen  303 -ALISGGRDF  311 (691)
T ss_pred             -eEEecceee
Confidence             777777765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=8.4e-23  Score=198.18  Aligned_cols=257  Identities=22%  Similarity=0.377  Sum_probs=213.5

Q ss_pred             ceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      .++|.+..-+. +..+....+-+|..++|-...+.+..++.  |.+||.-++.+                          
T Consensus        37 sl~LYd~~~g~-~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d--------------------------   89 (311)
T KOG1446|consen   37 SLRLYDSLSGK-QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD--------------------------   89 (311)
T ss_pred             eEEEEEcCCCc-eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec--------------------------
Confidence            45555443332 23345556668999999877777777766  88899999875                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                        .+.++.+.||...|.+++.+|-++.+++++.|++|++||++..++...+.....+|  ++|.|.|-+||++.....|+
T Consensus        90 --NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   90 --NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             --CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEE
Confidence              45788899999999999999999999999999999999999888887777655555  78999999999999888999


Q ss_pred             EEECCCC--ceeEEecc---cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCe---EEEEEcCCCC
Q 005913          489 IWSMDRI--QPLRIMAG---HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI---LSLAMSPDGR  560 (670)
Q Consensus       489 lwd~~~~--~~~~~~~~---~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I---~~l~~sp~g~  560 (670)
                      +||++..  .|...+.-   .....+.+.|+|+|++|+.++..+.+++.|.-+|.....+.++...-   -..+|+|||+
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            9999853  45555543   36778999999999999999999999999999999999988776543   5778999999


Q ss_pred             EEEEEECCCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          561 YMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ++++|+.||+|.+|++.+|..+..+++ +.+++.++.|+|.-.++++++  ..+.+|=...
T Consensus       246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~  304 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE  304 (311)
T ss_pred             EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence            999999999999999999999999998 689999999999877777664  4688886543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1e-24  Score=231.93  Aligned_cols=283  Identities=18%  Similarity=0.314  Sum_probs=221.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ....+++...++-..++++ ....++||.+...........                     ....-+.-.-.+..+.|+
T Consensus        39 k~~~nAIs~nr~~~qiv~A-Grs~lklyai~~~~~~~~~~~---------------------~~k~kqn~~~S~~DVkW~   96 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVA-GRSLLKLYAINPNDFSEKCNH---------------------RFKTKQNKFYSAADVKWG   96 (839)
T ss_pred             ccccceEeecCCcceeEEe-cccceeeEeeCcccCCcceee---------------------ecccccceeeehhhcccc
Confidence            4567788888988888877 456788888764211100000                     000000111234567776


Q ss_pred             C-CCCEEEEEeCCCeEEEEeCCC---CceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913          431 P-LGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       431 p-~~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      . +.++|++++..|.|.+||+..   ...+..|..|...+.++.|++ ...++++||.||+|++||++..+....+.+..
T Consensus        97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS  176 (839)
T KOG0269|consen   97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS  176 (839)
T ss_pred             cchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccc
Confidence            4 357899999999999999987   455678899999999999999 56789999999999999999998888898888


Q ss_pred             CCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       506 ~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      ..|+.|+|+| .+++++++...|.+++||+|. .++...+..|.++|.|+.|+|++.+|||||.|+.|+|||+.+++.-.
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP  256 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence            9999999998 478899999999999999985 46778899999999999999999999999999999999998765433


Q ss_pred             EeeCCC-cceEEEEEcCCCC-EEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec-CC
Q 005913          584 PLMGHT-SCVWTLAYSCEGS-LLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RN  658 (670)
Q Consensus       584 ~~~~h~-~~V~sl~~s~~g~-~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~-~~  658 (670)
                      ...-++ .+|.++.|-|+.. .|++++  .|-.|+|||+.....              +..++..|...++.++|.. +-
T Consensus       257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--------------P~~t~~eH~~~vt~i~W~~~d~  322 (839)
T KOG0269|consen  257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--------------PYATFLEHTDSVTGIAWDSGDR  322 (839)
T ss_pred             eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--------------cceeeeccCccccceeccCCCc
Confidence            333333 6899999999765 566665  577899999987642              3457778888899999965 55


Q ss_pred             cEEEEeeCCCC
Q 005913          659 LLFAAGALSKT  669 (670)
Q Consensus       659 ~~La~gs~dgs  669 (670)
                      .+|-+++.||+
T Consensus       323 ~~l~s~sKD~t  333 (839)
T KOG0269|consen  323 INLWSCSKDGT  333 (839)
T ss_pred             eeeEeecCccH
Confidence            67788888875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.9e-24  Score=201.83  Aligned_cols=240  Identities=25%  Similarity=0.355  Sum_probs=197.8

Q ss_pred             eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEEE
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS  491 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd  491 (670)
                      -..|...|..+...--|..|++||.|++|+|+.++...   .+..+.||.+|||.++|..  .|.+||+++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            45688888887777779999999999999999998654   4678899999999999976  899999999999999999


Q ss_pred             CCCCc--eeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC---cEEEEEecCCCCeEEEEEcCC---C--
Q 005913          492 MDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPD---G--  559 (670)
Q Consensus       492 ~~~~~--~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~sp~---g--  559 (670)
                      -.+++  .......|...|++++|.|.  |-.|+++++||.|.+.+.++.   ...+....|.-.|++++|.|-   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            88774  33455689999999999886  568999999999999988754   233456689999999999995   5  


Q ss_pred             ---------CEEEEEECCCeEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCC----CEEEEEECCCcEEEEeCCCCccc
Q 005913          560 ---------RYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       560 ---------~~l~sg~~dg~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g----~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                               +.|++|+.|..|+||+..++.  .-..+.+|+..|..++|.|.-    ..|++|+.||+|.||-.......
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                     569999999999999998763  334588999999999999954    48999999999999987743221


Q ss_pred             cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                               -.   ...+.....+++.++||..|.+|++++.|+
T Consensus       247 ---------wk---~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  247 ---------WK---KTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             ---------cc---ccccccCCcceEEEEEeccccEEEEecCCc
Confidence                     11   123334567899999999999999988775

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1e-23  Score=221.63  Aligned_cols=324  Identities=15%  Similarity=0.208  Sum_probs=246.8

Q ss_pred             cceecCCCCCC--ceeEEEeecCCCCEEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCCcccccc--CCC-
Q 005913          330 NRVHLSSAALP--SVSFYTFINTHNGLNCASISQD-----------GSLVAGGFSDSSLKVWDMAKLGQQAVSS--GLQ-  393 (670)
Q Consensus       330 ~~~~l~~~~~p--s~~~~t~~~~~~~V~~l~fs~d-----------~~~La~g~~dg~I~Iwdl~~~~~~~~~~--~~~-  393 (670)
                      ..+|+|+..-+  ...++.++-|...|+.+.--|.           ...+.+++.|++||+|++.......+..  ... 
T Consensus       346 hSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~  425 (1080)
T KOG1408|consen  346 HSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA  425 (1080)
T ss_pred             ceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh
Confidence            46778865433  3345677778888888776551           1247899999999999998622111100  000 


Q ss_pred             ---CCCCCCCCccccC---CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEe
Q 005913          394 ---GENDTTPREDIIG---PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW  467 (670)
Q Consensus       394 ---~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~  467 (670)
                         ..........++.   .....+.....-+....+.+++.+|+|++|++|..-|++++|++...+....+..|...|.
T Consensus       426 ~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil  505 (1080)
T KOG1408|consen  426 NLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL  505 (1080)
T ss_pred             hhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE
Confidence               0000000000000   0001111222334556899999999999999999999999999999888888999999999


Q ss_pred             EEEEec---CCCEEEEEECCCcEEEEECCC-CceeEEecccCCCeeEEEEcCCC--CEEEEEEcCCcEEEEECCCCcEEE
Q 005913          468 DVQFNP---QGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVR  541 (670)
Q Consensus       468 ~l~~sp---~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~  541 (670)
                      |+.|+.   ....||+++.|+-|++||+.. ..++..+.+|.+.|+++.|--+|  ..+++++.|+.|.+--.+.....+
T Consensus       506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~  585 (1080)
T KOG1408|consen  506 CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR  585 (1080)
T ss_pred             EEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence            999986   457899999999999999864 45677889999999999998877  678889999887654433322333


Q ss_pred             EEecC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC---CCcceEEEEEcCCCCEEEEEECCCcE
Q 005913          542 IFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTV  613 (670)
Q Consensus       542 ~~~~h-----~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~---h~~~V~sl~~s~~g~~l~sgs~Dg~I  613 (670)
                      .|..|     ...++.++..|..+++++++.|..|+|||+.+|+..+.|++   |.+....+...|.|.||++.+.|.++
T Consensus       586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl  665 (1080)
T KOG1408|consen  586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL  665 (1080)
T ss_pred             eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce
Confidence            34333     24689999999999999999999999999999999999874   66788899999999999999999999


Q ss_pred             EEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          614 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       614 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      .++|+.+++               ++....+|...|+.+.|++|-+.|++.+.||
T Consensus       666 ~~~Df~sgE---------------cvA~m~GHsE~VTG~kF~nDCkHlISvsgDg  705 (1080)
T KOG1408|consen  666 CFVDFVSGE---------------CVAQMTGHSEAVTGVKFLNDCKHLISVSGDG  705 (1080)
T ss_pred             EEEEeccch---------------hhhhhcCcchheeeeeecccchhheeecCCc
Confidence            999999975               5778889999999999999999999998887

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.4e-25  Score=236.69  Aligned_cols=237  Identities=26%  Similarity=0.501  Sum_probs=217.8

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +..|...|.|+..-..++.+++|+.|-.+-+|.+...                            .....+.+|..+|-+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp----------------------------~~i~S~~~hespIeS   75 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP----------------------------NAITSLTGHESPIES   75 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCC----------------------------chhheeeccCCccee
Confidence            4456667888888667889999999999999987641                            122348899999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS  506 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~  506 (670)
                      +.|+++..+|++|+.+|+|++||+.....++++.+|...+.++.|+|.+.|+++|+.|+.+.+||++...+...+.+|..
T Consensus        76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      .|.++.|+|+|.+++.|+.|.+++|||...|+....|.+|.+.+.++.|+|..-.+++|+.|+++++||+++...+....
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK  235 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             CCCcceEEEEEcCCCCEEEEEECCC
Q 005913          587 GHTSCVWTLAYSCEGSLLASGSADC  611 (670)
Q Consensus       587 ~h~~~V~sl~~s~~g~~l~sgs~Dg  611 (670)
                      .....|.++.|+|++..+.+|....
T Consensus       236 ~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CccCCceeeeecCCceeeecCchhh
Confidence            7888999999999999988886553

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.1e-24  Score=214.95  Aligned_cols=242  Identities=19%  Similarity=0.307  Sum_probs=204.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      -.+.|.|++-+|+|.+|+.|+..|.|.+|.+.+                            +.....+.+|-.+|+|+.|
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss----------------------------G~LL~v~~aHYQ~ITcL~f  131 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS----------------------------GILLNVLSAHYQSITCLKF  131 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEecc----------------------------ccHHHHHHhhccceeEEEE
Confidence            357899999999999999999999999999986                            3455667889999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCC---------CCceeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCcee
Q 005913          430 SPLGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      +-||.+|+|||.||.|.+|.+.         +-.....+..|+-+|+++...+.  ..+++|+|.|+++++||+..+..+
T Consensus       132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL  211 (476)
T KOG0646|consen  132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL  211 (476)
T ss_pred             eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence            9999999999999999999864         23467888999999999998774  568999999999999999999888


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC----------------cEEEEEecCCC--CeEEEEEcCCCC
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----------------ECVRIFIGHRS--MILSLAMSPDGR  560 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~----------------~~~~~~~~h~~--~I~~l~~sp~g~  560 (670)
                      ..+. ....+.+++..|-+..+++|+.+|.|.+.++.+.                ..+..+.+|.+  +|+|++++-||.
T Consensus       212 lti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt  290 (476)
T KOG0646|consen  212 LTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT  290 (476)
T ss_pred             EEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence            7776 5578999999999999999999999999887432                34567789988  999999999999


Q ss_pred             EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEE-EECCCcEEEEeCCC
Q 005913          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS-GSADCTVKLWDVTT  620 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~s-gs~Dg~I~iwd~~~  620 (670)
                      .|++|+.||.++|||+.+.++++++....++|+.+.+.|-.+-.+. -...-.+-.|++..
T Consensus       291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr  351 (476)
T KOG0646|consen  291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR  351 (476)
T ss_pred             EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence            9999999999999999999999988767799999999664332332 23334455565543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.2e-24  Score=231.42  Aligned_cols=245  Identities=22%  Similarity=0.395  Sum_probs=203.9

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          354 LNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       354 V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      +..+.|+. +.++||+++..|.|.+||+...                         ........+..|...|.++.|++.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------------------------~rnk~l~~f~EH~Rs~~~ldfh~t  144 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS-------------------------IRNKLLTVFNEHERSANKLDFHST  144 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcc-------------------------ccchhhhHhhhhccceeeeeeccC
Confidence            45567764 5889999999999999999852                         123455678899999999999986


Q ss_pred             C-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC-ceeEEecccCCCee
Q 005913          433 G-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVD  509 (670)
Q Consensus       433 ~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~~~v~  509 (670)
                      . .+|++||.||+|++||++......++.+....|.+|.|+| .+.+|+++...|.+++||++.. ++...+..|.++|.
T Consensus       145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~  224 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL  224 (839)
T ss_pred             CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence            5 5788999999999999999999999999899999999999 6788999999999999999875 45677889999999


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCC-EEEEEE--CCCeEEEEeCCCC-eeeEE
Q 005913          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG-RCVTP  584 (670)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~-~l~sg~--~dg~I~iwDl~~~-~~~~~  584 (670)
                      |+.|||++.+||||+.|++|+|||+.+++...... ....++.++.|-|... .|++++  .|-.|+|||++.. -+..+
T Consensus       225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t  304 (839)
T KOG0269|consen  225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT  304 (839)
T ss_pred             EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence            99999999999999999999999998665433332 2347899999999765 466554  6788999999754 45577


Q ss_pred             eeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCcc
Q 005913          585 LMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       585 ~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +..|+..++.++|.. |...+.+++.||+|..-.++....
T Consensus       305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  305 FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT  344 (839)
T ss_pred             eeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence            889999999999965 556899999999988776665543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.8e-23  Score=199.38  Aligned_cols=267  Identities=19%  Similarity=0.330  Sum_probs=201.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      -.|+.||+.|.+||+|+.||.|.|||+.+                            ...-+.+.+|..+|++++||++|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T----------------------------~~iar~lsaH~~pi~sl~WS~dg   77 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDT----------------------------FRIARMLSAHVRPITSLCWSRDG   77 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccc----------------------------cchhhhhhccccceeEEEecCCC
Confidence            88999999999999999999999999986                            23445678999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEecccC----CCe
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHL----SDV  508 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd~~~~~~~~~~~~~~----~~v  508 (670)
                      +.|+++|.|..|.+||+..+.++..+. ...+||.+.|+|.... +++.-.+....+.++..+.....-....    ...
T Consensus        78 r~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa  156 (405)
T KOG1273|consen   78 RKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA  156 (405)
T ss_pred             CEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence            999999999999999999999888877 5789999999995443 3333344456666665422211111111    123


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-------e
Q 005913          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLASG-------R  580 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-------~  580 (670)
                      .+..|++.|+|+++|+..|.+.++|..+-+++..++-.. ..|.++.++..|++|+..+.|..|+.|++..-       .
T Consensus       157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e  236 (405)
T KOG1273|consen  157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE  236 (405)
T ss_pred             ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence            345689999999999999999999999999998887666 78999999999999999999999999998621       1


Q ss_pred             e--eEEeeC--CCcceEEEEEcCCCCEEEEEECC-CcEEEEeCCCCccccccccccCCcccccccccCCCC-CCeEEEEE
Q 005913          581 C--VTPLMG--HTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS-TPVYSLQF  654 (670)
Q Consensus       581 ~--~~~~~~--h~~~V~sl~~s~~g~~l~sgs~D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~f  654 (670)
                      +  .+.++.  ....=.+++||.+|.+++.|+.. ..++||.-..+..               ++.+.+.. .....+.|
T Consensus       237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL---------------VKILhG~kgE~l~DV~w  301 (405)
T KOG1273|consen  237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL---------------VKILHGTKGEELLDVNW  301 (405)
T ss_pred             cChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcce---------------eeeecCCchhheeeccc
Confidence            1  111111  11233568899999999888743 6799999887753               33443333 45666677


Q ss_pred             ecCCcEEEEe
Q 005913          655 SRRNLLFAAG  664 (670)
Q Consensus       655 s~~~~~La~g  664 (670)
                      +|-..++++-
T Consensus       302 hp~rp~i~si  311 (405)
T KOG1273|consen  302 HPVRPIIASI  311 (405)
T ss_pred             ccceeeeeec
Confidence            7766655544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=9e-24  Score=221.96  Aligned_cols=246  Identities=23%  Similarity=0.412  Sum_probs=212.8

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      ..+...++.|++.||+|++||+|..-|.++||++...                            ........|...|.|
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----------------------------~~~~~~eAHesEilc  506 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL----------------------------EYTCFMEAHESEILC  506 (1080)
T ss_pred             hcCcccceEEEEECCCcceecccCccCceEEEEehhh----------------------------hhhhheecccceeEE
Confidence            3456678999999999999999999999999999852                            244456789999999


Q ss_pred             EEEcCC---CCEEEEEeCCCeEEEEeCCCC-ceeEEeeCCCccEeEEEEecCC--CEEEEEECCCcEEEEECCCCceeEE
Q 005913          427 ASFSPL---GDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQG--HYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       427 l~~sp~---~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~g--~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      +.|+..   .++|++++.|..|++||+... ..+.++.+|...|+++.|...|  ..+++++.|+.+.+-........+.
T Consensus       507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~  586 (1080)
T KOG1408|consen  507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL  586 (1080)
T ss_pred             EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence            999863   358999999999999998754 4567889999999999999877  6799999998876655443333344


Q ss_pred             eccc-----CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec---CCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913          501 MAGH-----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIM  572 (670)
Q Consensus       501 ~~~~-----~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~sg~~dg~I~  572 (670)
                      +..|     ...+..|+..|+.+++++++.|+.|+|||+.+|+.++.|.+   |.+....+...|.|.||++.+.|.++.
T Consensus       587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~  666 (1080)
T KOG1408|consen  587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC  666 (1080)
T ss_pred             ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence            4333     24578899999999999999999999999999999999975   556788899999999999999999999


Q ss_pred             EEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ++|..+|+++.++.+|...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus       667 ~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  667 FVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            999999999999999999999999999999999999999999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=5.3e-23  Score=216.59  Aligned_cols=314  Identities=24%  Similarity=0.362  Sum_probs=233.7

Q ss_pred             EEEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC----Cccceee
Q 005913          344 FYTFINTHNGLNCASISQDG---SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG----RKRSYTL  416 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~---~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  416 (670)
                      ...+.+|.+-|.+++|..-+   -+||+|++|.+||||.+........... ........+...+....    ....-..
T Consensus       184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~-e~~~t~~~~~~~f~~l~~i~~~is~eal  262 (764)
T KOG1063|consen  184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER-EDSLTTLSNLPVFMILEEIQYRISFEAL  262 (764)
T ss_pred             EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc-ccccccccCCceeeeeeeEEEEEehhhh
Confidence            34567888999999998644   4899999999999999864321110000 00000000000000000    0011134


Q ss_pred             eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EE---eeCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VC---YKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~----~~---~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l  489 (670)
                      +.||...|+++.|+|.+..|+++|.|.++.+|......-+    ..   ..+.....++..|+|++..+++-+..|..++
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            5699999999999999999999999999999987755322    11   2234556899999999999999999999999


Q ss_pred             EECCCC---ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------------------------------
Q 005913          490 WSMDRI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------------------------------  536 (670)
Q Consensus       490 wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~------------------------------  536 (670)
                      |.....   .+...+.||...|..++|+|.|.+|++.+.|.+-|++-.-.                              
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F  422 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF  422 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence            983321   23445679999999999999999999999998888864310                              


Q ss_pred             -----CcEEEEE--------------------------------------------------------------------
Q 005913          537 -----GECVRIF--------------------------------------------------------------------  543 (670)
Q Consensus       537 -----~~~~~~~--------------------------------------------------------------------  543 (670)
                           .+.++.|                                                                    
T Consensus       423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e  502 (764)
T KOG1063|consen  423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE  502 (764)
T ss_pred             eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence                 0011111                                                                    


Q ss_pred             -------------------ecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913          544 -------------------IGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (670)
Q Consensus       544 -------------------~~h~~~I~~l~~sp~g~~l~sg~~d-----g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~  599 (670)
                                         .||...|++++.+|+|+++|+++..     ..|++|+..+...+..+.+|+-.|+.++|||
T Consensus       503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP  582 (764)
T ss_pred             CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence                               1788899999999999999998754     4699999999999999999999999999999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          600 EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       600 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ||++|++.|.|.++.+|.........           ........|..-|.++.|+|++.++|++|.|++
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e-----------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDE-----------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKK  641 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchh-----------hhhccccccceEEEEcccCcccceeEEecCCce
Confidence            99999999999999999985543211           113346778889999999999999999999975

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.1e-22  Score=194.36  Aligned_cols=291  Identities=22%  Similarity=0.370  Sum_probs=212.8

Q ss_pred             cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          349 NTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       349 ~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      .|.++|+++.+.+ .|+++++|+.||.|.+||++.......             +.+..............+|.-.|.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-------------s~li~k~~c~v~~~h~~~Hky~iss~  107 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-------------SGLIAKHKCIVAKQHENGHKYAISSA  107 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-------------ccceeheeeeccccCCccceeeeeee
Confidence            4668899999987 599999999999999999986321100             00000000000111235788999999


Q ss_pred             EEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC---CCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913          428 SFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       428 ~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---g~~l~s~s~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      .|-|-.. .+.++|.|.++++||.++.+....|+- .+.|.+-+|+|-   ...+|+|..|-.|++.|+..+....++.|
T Consensus       108 ~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG  186 (397)
T KOG4283|consen  108 IWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG  186 (397)
T ss_pred             EEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence            9999554 778899999999999999988888874 567889999983   34678888889999999999999999999


Q ss_pred             cCCCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCC-cEEEEEe--------------cCCCCeEEEEEcCCCCEEEEEEC
Q 005913          504 HLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSG-ECVRIFI--------------GHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~-~~~~~~~--------------~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      |...|.++.|+|...+ |++|+.||.|++||++.. .|.+.+.              .|.+.+..++|+.+|.++++++.
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            9999999999998876 567999999999999864 4444443              56678999999999999999999


Q ss_pred             CCeEEEEeCCCCeee-EEee--CCCc---ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccc
Q 005913          568 DGTIMMWDLASGRCV-TPLM--GHTS---CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT  641 (670)
Q Consensus       568 dg~I~iwDl~~~~~~-~~~~--~h~~---~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  641 (670)
                      |..+++|+..+|+-- ..+-  .|..   .-..+. +.+...++---.++++.++++-.+..               +..
T Consensus       267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~---------------ir~  330 (397)
T KOG4283|consen  267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF---------------VRR  330 (397)
T ss_pred             ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE---------------EEe
Confidence            999999999887532 1110  1111   111122 33444455555567777777766542               445


Q ss_pred             cCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          642 LPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       642 ~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      +.+|...|.+..|.|+=+-+.+|..|++
T Consensus       331 l~~h~k~i~c~~~~~~fq~~~tg~~d~n  358 (397)
T KOG4283|consen  331 LSTHLKRINCAAYRPDFEQCFTGDMNGN  358 (397)
T ss_pred             eecccceeeEEeecCchhhhhccccCCc
Confidence            5566667888888887777777777664

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=7.2e-24  Score=215.05  Aligned_cols=259  Identities=20%  Similarity=0.312  Sum_probs=215.5

Q ss_pred             ceecCCCCCC----ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          331 RVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       331 ~~~l~~~~~p----s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      .+++|+..-|    .+..+-.++..+-|.++.++|||+.|++|+.-.++.|||+......                    
T Consensus       441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr--------------------  500 (705)
T KOG0639|consen  441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR--------------------  500 (705)
T ss_pred             eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc--------------------
Confidence            4556655433    1122233455667999999999999999999999999999752211                    


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~  486 (670)
                            ....+..-.-.+++++.+||.+..++|+.||.|.|||+.....+..+++|...+.||..+++|..|.+|+-|.+
T Consensus       501 ------ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  501 ------IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             ------hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence                  11112223356788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ||.||++.+..+.... ..+.|.++.++|++.++++|-.++.+.+.... +.....+.-|...|.++.|++.|+++++.+
T Consensus       575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecC
Confidence            9999999887665443 45789999999999999999999999998865 334445667899999999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      .|+.+..|...-|..+.... ..++|.++..|.|.++|+||+.|....||.+
T Consensus       653 kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999999998887654 4568999999999999999999998888875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=8.2e-23  Score=211.67  Aligned_cols=295  Identities=19%  Similarity=0.323  Sum_probs=232.4

Q ss_pred             CCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (670)
Q Consensus       338 ~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (670)
                      ..|..|-+.+.+|.+.|.|+...|.|.+||+|+.||+|+||.+.+..                            +++..
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR----------------------------cvr~~  438 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR----------------------------CVRTV  438 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce----------------------------EEEEE
Confidence            56888888999999999999999999999999999999999998733                            22222


Q ss_pred             ecCccCEEEEEEcCCCCE--EEEEeCCCeEEEEeCCCC-------------------------------------ceeEE
Q 005913          418 QGHSGPVYSASFSPLGDF--ILSSSADTTIRLWSTKLN-------------------------------------ANLVC  458 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~--L~s~s~Dg~I~lwd~~~~-------------------------------------~~~~~  458 (670)
                      . ..+.|.|++|+|.++.  ||++- ...+.|.+..-+                                     .-++.
T Consensus       439 ~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~  516 (733)
T KOG0650|consen  439 Q-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI  516 (733)
T ss_pred             e-ecceeEEEEecCCCCceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE
Confidence            2 3358999999997763  33333 333444332111                                     01223


Q ss_pred             eeCCCccEeEEEEecCCCEEEEEECC---CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC
Q 005913          459 YKGHNYPVWDVQFNPQGHYFASSSHD---RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS  535 (670)
Q Consensus       459 ~~~h~~~V~~l~~sp~g~~l~s~s~d---g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~  535 (670)
                      .-.|..+|..+.|+..|.||++.+.+   ..|.|.++.......-|....+.|.++.|||...+|++++ ...|++||+.
T Consensus       517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~  595 (733)
T KOG0650|consen  517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLS  595 (733)
T ss_pred             EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehh
Confidence            33578889999999999999998754   5789999987766666666678899999999999999986 5689999999


Q ss_pred             CCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913          536 SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (670)
Q Consensus       536 ~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~  614 (670)
                      .+..+..+......|..++++|.|..|+.|+.|+.+..||+.-+ ++.++++.|...|++++|++.-.++++|+.||++.
T Consensus       596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~  675 (733)
T KOG0650|consen  596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI  675 (733)
T ss_pred             HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence            88877777777788999999999999999999999999999754 67788889999999999999999999999999999


Q ss_pred             EEeCCCCccccccccccCCcccccccccCCCCCC----eEEEEEecCCcEEEEeeCCCC
Q 005913          615 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP----VYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       615 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----V~~l~fs~~~~~La~gs~dgs  669 (670)
                      |+.-.--.....      ...+.++..+++|...    |..+.|+|...+|.+++.||+
T Consensus       676 Vfhg~VY~Dl~q------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t  728 (733)
T KOG0650|consen  676 VFHGMVYNDLLQ------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT  728 (733)
T ss_pred             EEeeeeehhhhc------CCceEeeeeccCceeecccceEeecccCCCceEEecCCCce
Confidence            987433221111      1123345666676554    999999999999999999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.4e-23  Score=207.55  Aligned_cols=262  Identities=19%  Similarity=0.270  Sum_probs=195.6

Q ss_pred             EEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC--CCCccceeeeecCccCE
Q 005913          354 LNCASISQ-------DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP--NGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       354 V~~l~fs~-------d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V  424 (670)
                      -.|++|-.       -|+++|+|+.|..|.|||+.-.........+.         ...+.  .........-.+|+..|
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LG---------s~~sk~~~k~~k~~~~~~gHTdav  246 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLG---------SKASKKKKKKGKRSNSASGHTDAV  246 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeec---------hhhhhhhhhhcccccccccchHHH
Confidence            35777743       37899999999999999987422111000000         00000  00111222345799999


Q ss_pred             EEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913          425 YSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       425 ~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                      .+++|+..-+ .|++||.|.+|++||+.++++...+..|+..|.++.|+| ...++++|+.|++|.+.|++........-
T Consensus       247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w  326 (463)
T KOG0270|consen  247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW  326 (463)
T ss_pred             HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence            9999987654 788999999999999999999999999999999999999 57789999999999999998543333223


Q ss_pred             ccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCC
Q 005913          503 GHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      ...+.|..++|+|.. +.+++++.||+|+-+|+|+. +++.++..|.++|.++++++. -.+++|++.|+.+++|++...
T Consensus       327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            355789999999865 57788889999999999965 999999999999999999985 457889999999999998644


Q ss_pred             ee--eEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccc
Q 005913          580 RC--VTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       580 ~~--~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      ..  +..-.-.-+...|.++.|+- -+++.||..+.++|||+.+....
T Consensus       407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            33  21111112345666777754 46888888889999999886543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=2.2e-21  Score=200.98  Aligned_cols=260  Identities=14%  Similarity=0.144  Sum_probs=190.7

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ..+++|+..... +..++ .....+.+++|+|+++.+ ++++.++.|++||..+..                        
T Consensus        11 ~~v~~~d~~t~~-~~~~~-~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------------------------   64 (300)
T TIGR03866        11 NTISVIDTATLE-VTRTF-PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE------------------------   64 (300)
T ss_pred             CEEEEEECCCCc-eEEEE-ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc------------------------
Confidence            356666543332 22233 334557889999999976 567788999999986521                        


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC-c
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-T  486 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-~  486 (670)
                          ....+..+. .+..++|+|+++.++++ +.++.|++||+.+...+..+.. ...+.+++|+|+|.++++++.++ .
T Consensus        65 ----~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~  138 (300)
T TIGR03866        65 ----VIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM  138 (300)
T ss_pred             ----EEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCe
Confidence                111222232 24678999999977654 5689999999998777766653 33468899999999999988775 5


Q ss_pred             EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCC-------CCeEEEEEcCC
Q 005913          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPD  558 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~-------~~I~~l~~sp~  558 (670)
                      +.+||..+++....+.. ...+.+++|+|+++++++++ .++.|++||+.+++.+..+..+.       .....++|+|+
T Consensus       139 ~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  217 (300)
T TIGR03866       139 AHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD  217 (300)
T ss_pred             EEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence            67789988776655432 24567899999999886554 58999999999998877664321       12356889999


Q ss_pred             CCEEEE-EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcc
Q 005913          559 GRYMAS-GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTK  623 (670)
Q Consensus       559 g~~l~s-g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~~~~~~  623 (670)
                      |+++++ .+.++.|.+||+.+++.+..+. +...+.+++|+|+|.+|+++ +.+|.|+|||+.++..
T Consensus       218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       218 GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            998655 4567789999999888776553 44578999999999999886 4689999999998654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=7.1e-23  Score=201.92  Aligned_cols=254  Identities=21%  Similarity=0.383  Sum_probs=194.3

Q ss_pred             eeeeecCccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCC----------------CceeEEeeCCCccEeEEEEecC-
Q 005913          414 YTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKL----------------NANLVCYKGHNYPVWDVQFNPQ-  474 (670)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~----------------~~~~~~~~~h~~~V~~l~~sp~-  474 (670)
                      -....+|.+.+..+.-++-++  +.++-+..|.|+||++..                .+.+.++.+|...-..++|||- 
T Consensus       144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence            344567888888888877654  555667889999999752                3457788899999999999992 


Q ss_pred             CCEEEEEECCCcEEEEECCCCcee---EEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCC---cEEEEEecCC
Q 005913          475 GHYFASSSHDRTARIWSMDRIQPL---RIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSG---ECVRIFIGHR  547 (670)
Q Consensus       475 g~~l~s~s~dg~v~lwd~~~~~~~---~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~  547 (670)
                      ...+++|..-+.|++|...++.-.   +.+.+|...|..++|+|.. +.|++|+.||+|+|||+|.+   .++.+ ..|.
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~  302 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHN  302 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccC
Confidence            234888888889999998776432   3466899999999999965 57889999999999999988   44444 7899


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEeCCC---CeeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCcc
Q 005913          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~---~~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +.|..|.|+.+-.+||+|+.||+++|||+++   ++++..+..|..+|+++.|+| +...|+++|.|..|.|||+.....
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            9999999999888999999999999999984   578899999999999999999 456889999999999999976443


Q ss_pred             ccccccc--cC-CcccccccccCCCCCCeEEEEEecCC-cEEEEeeCCC
Q 005913          624 VLKTEEK--SG-TNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSK  668 (670)
Q Consensus       624 ~~~~~~~--~~-~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~gs~dg  668 (670)
                      .......  .+ ...+.++......+..|-.|+|++.. -++++.+.||
T Consensus       383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            2111110  00 11112222333345578899999974 4556655555

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.4e-22  Score=193.17  Aligned_cols=267  Identities=15%  Similarity=0.254  Sum_probs=214.6

Q ss_pred             EEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeE
Q 005913          366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTI  445 (670)
Q Consensus       366 La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I  445 (670)
                      +++|+....|.=+++........         ..       ..........+..|.+++++++.+  +.++++||.|-+|
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~---------~s-------~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI   65 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCT---------DS-------VKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETI   65 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccc---------cc-------cceeeeccccccccccceeEEEec--ceeEeccCCCCcE
Confidence            67788877777777654220000         00       001122345577899999999998  8999999999999


Q ss_pred             EEEeCCCCceeEEeeCCCccEeEEEEecCCC--EEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEE
Q 005913          446 RLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG  523 (670)
Q Consensus       446 ~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~--~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tg  523 (670)
                      +|||+.....+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+......+..+++|.+.|+.++.||.++.-++.
T Consensus        66 ~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsV  145 (362)
T KOG0294|consen   66 HIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSV  145 (362)
T ss_pred             EEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEE
Confidence            9999999999999999999999999999765  89999999999999999999999999999999999999999999999


Q ss_pred             EcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCE
Q 005913          524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL  603 (670)
Q Consensus       524 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~  603 (670)
                      +.|+.+++||+-+|+.-....- ....+.+.|+|.|.+++.++.+ .|-+|.+.+......+... ..+.++.|- ++..
T Consensus       146 g~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~  221 (362)
T KOG0294|consen  146 GGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSE  221 (362)
T ss_pred             cCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCce
Confidence            9999999999998876554432 2234459999999999888765 5899999887766555432 456667765 6778


Q ss_pred             EEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEE--ecCCcEEEEeeCCCC
Q 005913          604 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF--SRRNLLFAAGALSKT  669 (670)
Q Consensus       604 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f--s~~~~~La~gs~dgs  669 (670)
                      |++|+.|+.|.+||.+...               +...+..|...|-++.+  .|.+.+|++++.||.
T Consensus       222 L~vG~d~~~i~~~D~ds~~---------------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  222 LLVGGDNEWISLKDTDSDT---------------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             EEEecCCceEEEeccCCCc---------------cceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence            9999999999999988743               35567788889999884  456889999999984

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=5.2e-21  Score=198.21  Aligned_cols=258  Identities=13%  Similarity=0.114  Sum_probs=192.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE-EEEeC
Q 005913          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSA  441 (670)
Q Consensus       363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L-~s~s~  441 (670)
                      ++++++++.|+.|++||+.+.                            .....+.++. .+.+++|+|++..+ ++++.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~----------------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~   51 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL----------------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASD   51 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC----------------------------ceEEEEECCC-CCCceEECCCCCEEEEEECC
Confidence            357889999999999998642                            1233344443 36789999999976 56778


Q ss_pred             CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE
Q 005913          442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI  520 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l  520 (670)
                      ++.|++||+.+++....+..+.. +..+.|+|+++.++++ +.++.+++||+.+.+.+..+.. ...+.+++|+|+++++
T Consensus        52 ~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l  129 (300)
T TIGR03866        52 SDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV  129 (300)
T ss_pred             CCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence            89999999998887776665543 5678999999877655 5689999999998877776653 3457889999999999


Q ss_pred             EEEEcCC-cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCeeeEEeeCCC-----c--c
Q 005913          521 ATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLMGHT-----S--C  591 (670)
Q Consensus       521 ~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~~~~~~~~h~-----~--~  591 (670)
                      ++++.++ .+.+||..+++....... ...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+..+.     .  .
T Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  208 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ  208 (300)
T ss_pred             EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence            9988765 567789988877665433 3456789999999988654 469999999999998877664321     1  2


Q ss_pred             eEEEEEcCCCCEEEE-EECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee-CCC
Q 005913          592 VWTLAYSCEGSLLAS-GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA-LSK  668 (670)
Q Consensus       592 V~sl~~s~~g~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs-~dg  668 (670)
                      ...++|+|+++++++ .+.++.|.+||+.+....               ... .....+.+++|+|+|..|++++ .+|
T Consensus       209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~---------------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~  271 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL---------------DYL-LVGQRVWQLAFTPDEKYLLTTNGVSN  271 (300)
T ss_pred             ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE---------------EEE-EeCCCcceEEECCCCCEEEEEcCCCC
Confidence            346889999998554 455778999998765421               111 1234688999999999988764 344

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.4e-23  Score=205.79  Aligned_cols=234  Identities=21%  Similarity=0.314  Sum_probs=202.4

Q ss_pred             eeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          415 TLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      ..+.||...|+|++=+|.. ..+++|+.||.|+|||+....+...++.|.+.|.++++..  ..++++|.|.+|+.|.++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence            4467999999999999987 6799999999999999999999999999999999999986  679999999999999988


Q ss_pred             CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEE
Q 005913          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIM  572 (670)
Q Consensus       494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~  572 (670)
                      .. +.+++.+. +.+..+.-+..++.++|++.  .|.|||.....++..+.-....|.++.|+|.. ..|++|+.|+.|.
T Consensus       138 ~~-p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv  213 (433)
T KOG0268|consen  138 GP-PLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV  213 (433)
T ss_pred             CC-cceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence            64 77777643 56777777777788888865  49999999999999998777889999999965 4677788999999


Q ss_pred             EEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913          573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL  652 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  652 (670)
                      +||++++.+++.+.- ...-..++|+|++-.+++|+.|..++.||+....              .++..+..|.+.|.+|
T Consensus       214 LyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--------------~p~~v~~dhvsAV~dV  278 (433)
T KOG0268|consen  214 LYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--------------RPLNVHKDHVSAVMDV  278 (433)
T ss_pred             EEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhc--------------ccchhhcccceeEEEe
Confidence            999999998876532 2234679999988899999999999999998754              3466788999999999


Q ss_pred             EEecCCcEEEEeeCCCC
Q 005913          653 QFSRRNLLFAAGALSKT  669 (670)
Q Consensus       653 ~fs~~~~~La~gs~dgs  669 (670)
                      .|||.|+=+++||+|.|
T Consensus       279 dfsptG~EfvsgsyDks  295 (433)
T KOG0268|consen  279 DFSPTGQEFVSGSYDKS  295 (433)
T ss_pred             ccCCCcchhccccccce
Confidence            99999999999999986

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=2.4e-22  Score=198.19  Aligned_cols=256  Identities=27%  Similarity=0.437  Sum_probs=193.4

Q ss_pred             ecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          348 INTHNGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       348 ~~~~~~V~~l~fs~--d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      ..|.+.++-+.-++  +..+.|+=+..|.|+||++...-....            ...........+.+.++.+|.+.=+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~------------~~~~~~~~s~~~Pl~t~~ghk~EGy  215 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS------------EPGLEVKDSEFRPLFTFNGHKGEGY  215 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc------------CccccccccccCceEEecccCccce
Confidence            44555666666555  345566667889999999875211110            0111112245667888999999999


Q ss_pred             EEEEcCCCC-EEEEEeCCCeEEEEeCCCCcee---EEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc--ee
Q 005913          426 SASFSPLGD-FILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--PL  498 (670)
Q Consensus       426 ~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~--~~  498 (670)
                      +++|||-.. .|++|..-+.|++|...++.-.   ..+.+|+..|-+++||| ....|++||.||+|+|||++.+.  +.
T Consensus       216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence            999999443 4788877788999999887543   34678999999999999 45689999999999999999872  22


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC---CcEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEE
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMW  574 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~---~~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iw  574 (670)
                      ...+.|.+.|+.|.|+....+|++|+.||+++|||+++   ++++..|.-|..+|++|.|+|. ...|++++.|..|.+|
T Consensus       296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            33478999999999999888999999999999999984   6788999999999999999994 5688889999999999


Q ss_pred             eCCCCee----------------eEEeeCCC--cceEEEEEcCC-CCEEEEEECCCcEEEE
Q 005913          575 DLASGRC----------------VTPLMGHT--SCVWTLAYSCE-GSLLASGSADCTVKLW  616 (670)
Q Consensus       575 Dl~~~~~----------------~~~~~~h~--~~V~sl~~s~~-g~~l~sgs~Dg~I~iw  616 (670)
                      |+....-                .+-+.-|.  ..|..+.|++. ..+|++.+.|| +.||
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            9863211                11122343  46778899985 45788888887 4444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=1.7e-21  Score=188.75  Aligned_cols=286  Identities=21%  Similarity=0.318  Sum_probs=215.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc-
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-  430 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-  430 (670)
                      +-...+.|||||..|++-+.|..+++|++..........           .    +.........-......|+..+|- 
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~-----------~----~~~~~~~~~~r~~eg~tvydy~wYs  114 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD-----------G----PLNFSKHLSYRYQEGETVYDYCWYS  114 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCC-----------C----ccccccceeEEeccCCEEEEEEeee
Confidence            346678999999999999999999999986421110000           0    000011111222344678888886 


Q ss_pred             ------CCCCEEEEEeCCCeEEEEeCCCCceeEEeeC--CC---ccEeEEEEecCCCEEEEEECCCcEEEEECC-CCcee
Q 005913          431 ------PLGDFILSSSADTTIRLWSTKLNANLVCYKG--HN---YPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPL  498 (670)
Q Consensus       431 ------p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~---~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-~~~~~  498 (670)
                            |+..++++.+.+.-|++||.-+++....|.+  |.   ....+++|+|||.+|++|. .+.|+++|+. .+.-.
T Consensus       115 ~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c  193 (406)
T KOG2919|consen  115 RMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDC  193 (406)
T ss_pred             ccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCC
Confidence                  5678999999999999999999998877765  22   2456899999999998775 5899999994 33322


Q ss_pred             --EEe-----cccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCC
Q 005913          499 --RIM-----AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDG  569 (670)
Q Consensus       499 --~~~-----~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg  569 (670)
                        ...     .+..+-+.|++|+|-. ..+++|+-..++-||.-..+.++..+-+|.+.|+.++|.++|+.|++|. .|-
T Consensus       194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~d  273 (406)
T KOG2919|consen  194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDD  273 (406)
T ss_pred             cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCC
Confidence              111     1335678999999954 5899999999999998888999999999999999999999999999987 477


Q ss_pred             eEEEEeCCCC-eeeEEeeCCCc-ceEE--EEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913          570 TIMMWDLASG-RCVTPLMGHTS-CVWT--LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  645 (670)
Q Consensus       570 ~I~iwDl~~~-~~~~~~~~h~~-~V~s--l~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  645 (670)
                      .|..||++.. .++..+..|.+ .=..  ....|+|++|++|+.||.|++||++....              .+..+..+
T Consensus       274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--------------~~sv~~~~  339 (406)
T KOG2919|consen  274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--------------EVSVTGNY  339 (406)
T ss_pred             eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--------------cccccccc
Confidence            8999999854 56667777765 2223  44578999999999999999999988432              24455667


Q ss_pred             CCCeEEEEEecCCcEEEEeeCC
Q 005913          646 STPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       646 ~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      ..-|..|+++|--.++|+++-.
T Consensus       340 sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  340 SDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccccceecCcccceeeeccCc
Confidence            7789999999998888887643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=1.4e-20  Score=191.67  Aligned_cols=231  Identities=21%  Similarity=0.414  Sum_probs=188.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      .-|.|++|.++|. +++|.++|.|.||+..+                            .+..+....|.+.|++++...
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~----------------------------~~~~k~~~aH~ggv~~L~~lr  297 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGT----------------------------NRISKQVHAHDGGVFSLCMLR  297 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCC----------------------------ceEEeEeeecCCceEEEEEec
Confidence            4599999999987 67899999999999753                            223333448999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCc----------------------------------------eeEEeeCCCccEeEEEE
Q 005913          432 LGDFILSSSADTTIRLWSTKLNA----------------------------------------NLVCYKGHNYPVWDVQF  471 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~----------------------------------------~~~~~~~h~~~V~~l~~  471 (670)
                      +|.+|- |+.|..|..||-.-.+                                        -.....+|....|.++.
T Consensus       298 ~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~  376 (626)
T KOG2106|consen  298 DGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT  376 (626)
T ss_pred             CccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence            887555 9999999999832000                                        00123468888999999


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeE
Q 005913          472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL  551 (670)
Q Consensus       472 sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~  551 (670)
                      +|+...+++++.|+.+++|+  ..+++.... ...++.|+.|||.| .++.|+..|...+.|..+...+..-.. ..+++
T Consensus       377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls  451 (626)
T KOG2106|consen  377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS  451 (626)
T ss_pred             CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence            99999999999999999999  444544433 45789999999999 999999999999999999777765555 88999


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEeCCC-CeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          552 SLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      +++|+|+|.+||.|+.|+.|++|-+.. |+....... |.++|+.+.||+|+++|.+-+.|-.|-.|.
T Consensus       452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            999999999999999999999998864 444444332 338999999999999999999999999994

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.3e-21  Score=189.01  Aligned_cols=243  Identities=23%  Similarity=0.322  Sum_probs=181.8

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--E--eeCCCccEeEEEEecCCCEEEEEE-CCCcEEE
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--C--YKGHNYPVWDVQFNPQGHYFASSS-HDRTARI  489 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~--~--~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~l  489 (670)
                      ..+++|.+.|++++|+.||++|++++.|++|++|+++......  .  ..-.....+.+.|+||..-+++.. ...++++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            3478999999999999999999999999999999998643211  0  111122457899999887766655 4558999


Q ss_pred             EECCCCc---e-e--------EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC
Q 005913          490 WSMDRIQ---P-L--------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (670)
Q Consensus       490 wd~~~~~---~-~--------~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp  557 (670)
                      |.+...+   . .        ..-..|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.||
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            9764321   1 1        1112355566667777788999999999999999998 888888877777788899999


Q ss_pred             CCCEEEEEECCCeEEEEeCC---CC-----eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccc
Q 005913          558 DGRYMASGDEDGTIMMWDLA---SG-----RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (670)
Q Consensus       558 ~g~~l~sg~~dg~I~iwDl~---~~-----~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  629 (670)
                      +|+++++++..--|++|..-   .|     ..+..+.+|.+.|..++||+++..+++.+.||+++|||++-.....+.  
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD--  316 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD--  316 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC--
Confidence            99999999999999999873   22     345678899999999999999999999999999999998754321111  


Q ss_pred             ccCCccccccccc----CCCCCCeEEEEEecCCcEEEEeeC
Q 005913          630 KSGTNRLRSLKTL----PTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       630 ~~~~~~~~~~~~~----~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                            +..+...    ....+.-..++.+|.|..||++..
T Consensus       317 ------pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g  351 (420)
T KOG2096|consen  317 ------PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG  351 (420)
T ss_pred             ------chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC
Confidence                  1112211    122223338999999999987643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.4e-21  Score=186.74  Aligned_cols=252  Identities=17%  Similarity=0.317  Sum_probs=196.4

Q ss_pred             eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw  490 (670)
                      -.+|..-|.++.|.+.|+.+++|+.|++|+|||.+.    ..+....+.|.+.|+.+.|.+  -|+.+|+++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            347889999999999999999999999999999653    345667788999999999976  69999999999999999


Q ss_pred             ECCC---------CceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCc------EEEEEe-------cC
Q 005913          491 SMDR---------IQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE------CVRIFI-------GH  546 (670)
Q Consensus       491 d~~~---------~~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~------~~~~~~-------~h  546 (670)
                      .-..         -....++....+.|..|.|.|.  |-.+++++.||.+|||+.-..-      ....+.       .+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            7521         1123455667789999999984  6689999999999999875432      222222       35


Q ss_pred             CCCeEEEEEcC---CCCEEEEEECC-----CeEEEEeCCCC----eeeEEeeCCCcceEEEEEcCCC----CEEEEEECC
Q 005913          547 RSMILSLAMSP---DGRYMASGDED-----GTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCEG----SLLASGSAD  610 (670)
Q Consensus       547 ~~~I~~l~~sp---~g~~l~sg~~d-----g~I~iwDl~~~----~~~~~~~~h~~~V~sl~~s~~g----~~l~sgs~D  610 (670)
                      ..+..|+.|+|   ...+||.|+.+     +.+.||....+    ..+.++.+|+.+|+.++|.|+-    .+||+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            56788999998   34578888766     57889976543    3566778999999999999953    489999999


Q ss_pred             CcEEEEeCCCCcccccccc-----ccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          611 CTVKLWDVTTSTKVLKTEE-----KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       611 g~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      | |+||.+.........++     ....-....+..+..|.+.|..+.|.-.|.+|++.+.||.
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~  311 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC  311 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence            9 99999985332221111     1112234567788999999999999999999999999985

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2e-21  Score=210.92  Aligned_cols=236  Identities=24%  Similarity=0.333  Sum_probs=201.5

Q ss_pred             ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~  496 (670)
                      .+|...-+.++|.|+|.+|++|+.||.|++|+.... +....+.-+...|.+++..  +.+|++|+.+++|.+|.+..+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            468899999999999999999999999999998765 3334444367777777664  5599999999999999999988


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      .-..+....-++++++|+.+|++++.|++|-.|++.++........+.+|.++|.++.|+|++.+||+.+.||.|++||+
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence            87777777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeEEeeCC--------CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913          577 ASGRCVTPLMGH--------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP  648 (670)
Q Consensus       577 ~~~~~~~~~~~h--------~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (670)
                      .++.+...+.+-        ...+..++|+|+|..++..+.|++|++|+..........             ....+.+.
T Consensus       168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-------------r~~~~ss~  234 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-------------RDKLSSSK  234 (933)
T ss_pred             ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-------------cccccccc
Confidence            998877666431        345677999999999999999999999999886543211             11223344


Q ss_pred             eEEEEEecCCcEEEEeeCCC
Q 005913          649 VYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       649 V~~l~fs~~~~~La~gs~dg  668 (670)
                      +..+.|+|+|.+||+++.+|
T Consensus       235 ~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  235 FSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             eEEEEEcCCCcEEeeeccCC
Confidence            99999999999999999887

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=3.9e-21  Score=185.71  Aligned_cols=231  Identities=19%  Similarity=0.254  Sum_probs=189.8

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      ..+.|..++.+++|.+ ...+++|+.||.|+.+|+++.                             ....+..|..+|.
T Consensus        49 ~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~-----------------------------~~~~igth~~~i~   98 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG-----------------------------NEDQIGTHDEGIR   98 (323)
T ss_pred             hheecCCceeeeeccC-CceEEEeccCceEEEEEecCC-----------------------------cceeeccCCCceE
Confidence            4567888999999987 567889999999999999862                             2344567999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe--cc
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--AG  503 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~--~~  503 (670)
                      |+.+++-...+++||.|++|++||.+.......+.. ...|.++..  .|+.|++|+.|..+.+||+++.......  ..
T Consensus        99 ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~  175 (323)
T KOG1036|consen   99 CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS  175 (323)
T ss_pred             EEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhcccc
Confidence            999999999999999999999999987555555543 336777666  4778999999999999999876543322  23


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC----cEEEEEecCCC---------CeEEEEEcCCCCEEEEEECCCe
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRS---------MILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~---------~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                      -.-.+.|+++-|++.-+++++-||.|.+=.+...    .....|..|..         +|.+|+|+|-...|+||+.||.
T Consensus       176 lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~  255 (323)
T KOG1036|consen  176 LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI  255 (323)
T ss_pred             ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce
Confidence            3456899999999999999999999988666554    23344555542         7999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA  609 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~  609 (670)
                      |.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus       256 V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  256 VNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999888888999999999999999974

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=2.4e-21  Score=185.32  Aligned_cols=209  Identities=27%  Similarity=0.469  Sum_probs=175.5

Q ss_pred             eeecCccCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc------------ee---EEeeCCCccEeEEEEec-CCCEE
Q 005913          416 LYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNA------------NL---VCYKGHNYPVWDVQFNP-QGHYF  478 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~------------~~---~~~~~h~~~V~~l~~sp-~g~~l  478 (670)
                      ....|.+.|+++...+ .|+++++|+.||.|.+||++...            ++   ..-.+|...|.++.|-| |...|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3456889999999987 57899999999999999997543            11   01236889999999999 66789


Q ss_pred             EEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913          479 ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (670)
Q Consensus       479 ~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~  555 (670)
                      .+++.|.++++||.++.+....|. ..+.|.+-+|+|-   ..++|+|..|-.|++.|+.+|.+-.++.+|.+.|.++.|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            999999999999999988877776 4467777788873   457888999999999999999999999999999999999


Q ss_pred             cCCCC-EEEEEECCCeEEEEeCCCC-eeeEE--------------eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          556 SPDGR-YMASGDEDGTIMMWDLASG-RCVTP--------------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       556 sp~g~-~l~sg~~dg~I~iwDl~~~-~~~~~--------------~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      +|... .|++|+.||.|++||++.. .+...              -..|.+.|.+++|+.++.++++++.|..+++|+..
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            99766 5778999999999999754 22222              23577889999999999999999999999999999


Q ss_pred             CCcccc
Q 005913          620 TSTKVL  625 (670)
Q Consensus       620 ~~~~~~  625 (670)
                      ++....
T Consensus       277 ~G~ntl  282 (397)
T KOG4283|consen  277 SGRNTL  282 (397)
T ss_pred             cCcccc
Confidence            886543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=3.4e-21  Score=185.30  Aligned_cols=249  Identities=18%  Similarity=0.239  Sum_probs=198.1

Q ss_pred             cccceecCCCCC-CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          328 LRNRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       328 ~~~~~~l~~~~~-ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      ....+++|...- .........++.++|.|++|+.||+.+++|+.|+.+++||+..                        
T Consensus        48 WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S------------------------  103 (347)
T KOG0647|consen   48 WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS------------------------  103 (347)
T ss_pred             cCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC------------------------
Confidence            345677775432 1111234577889999999999999999999999999999985                        


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d  484 (670)
                           ........|.++|.++.|-+...  .|++||.|.+|+.||++....+.++.- ...+.++..  ....++++..+
T Consensus       104 -----~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~  175 (347)
T KOG0647|consen  104 -----GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAE  175 (347)
T ss_pred             -----CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecC
Confidence                 24556778999999999988766  899999999999999998887777664 334555444  34578888999


Q ss_pred             CcEEEEECCCCceeE--EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--cEEEEEecCCC---------CeE
Q 005913          485 RTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRS---------MIL  551 (670)
Q Consensus       485 g~v~lwd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~---------~I~  551 (670)
                      +.|.+|+++++....  ....-.-.++||+..++....+.|+-.|.+.+..+..+  +.-..|+.|..         .|.
T Consensus       176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN  255 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN  255 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence            999999997653321  11223346899999999888899999999999988876  33345556652         478


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE
Q 005913          552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs  608 (670)
                      +|+|+|.-..|+|+|.||++.+||-.....++....|..+|++++|+.+|.+++-+.
T Consensus       256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            899999999999999999999999988888999899999999999999999887653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=3.4e-20  Score=188.98  Aligned_cols=273  Identities=19%  Similarity=0.284  Sum_probs=213.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC-ccCEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSAS  428 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~  428 (670)
                      .++.|..+.|+|.+.-|.+.+..|.+..|++.+.....                         ....+..+ ..-|.|++
T Consensus       199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k-------------------------~~~~fek~ekk~Vl~v~  253 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVK-------------------------RQGIFEKREKKFVLCVT  253 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEE-------------------------EeeccccccceEEEEEE
Confidence            35668899999987777777789999999987633211                         11122222 26799999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc-----------e
Q 005913          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-----------P  497 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~-----------~  497 (670)
                      |.++|+ +++|..+|+|.||+..+.+..+....|.+.|.+++...+|. |++|+.|+.|..||-+-.+           +
T Consensus       254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~  331 (626)
T KOG2106|consen  254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGP  331 (626)
T ss_pred             EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCC
Confidence            999887 67899999999999988877777779999999999999996 5559999999999832000           0


Q ss_pred             e-----------------------------EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC
Q 005913          498 L-----------------------------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (670)
Q Consensus       498 ~-----------------------------~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  548 (670)
                      +                             ....+|......++.||+.+.++|++.|+.+++|+  ..+.+.... -..
T Consensus       332 iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d  408 (626)
T KOG2106|consen  332 IRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IED  408 (626)
T ss_pred             eeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecC
Confidence            1                             11235777788899999999999999999999999  445544332 347


Q ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccc
Q 005913          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (670)
Q Consensus       549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~  628 (670)
                      ++.|+.|+|.| .+|.|+..|...+.|..+...+..-. .+.+++.+.|+|+|.+||.|+.|+.|.||.+..+...... 
T Consensus       409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r-  485 (626)
T KOG2106|consen  409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR-  485 (626)
T ss_pred             ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE-
Confidence            78999999999 99999999999999999965554443 4889999999999999999999999999999886543211 


Q ss_pred             cccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          629 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                                +...  +.++|+.+.||+|+++|.+-+-|
T Consensus       486 ----------~~k~--~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  486 ----------VGKC--SGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             ----------eeee--cCceeEEeeecCCCceEEeccCc
Confidence                      1222  23899999999999999876544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=3.3e-21  Score=194.59  Aligned_cols=281  Identities=21%  Similarity=0.264  Sum_probs=212.6

Q ss_pred             ecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          348 INTHNGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~--~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .-+.+.|+|++|+|..  +++|+|...|.|-+||+.+..                        .....+..+..|+++|.
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------------------------~d~d~v~~f~~hs~~Vs  238 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------------------------KDKDGVYLFTPHSGPVS  238 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC------------------------CccCceEEeccCCcccc
Confidence            3467889999999964  589999999999999996311                        11235667889999999


Q ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEe
Q 005913          426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIM  501 (670)
Q Consensus       426 ~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~-~~~~  501 (670)
                      ++.|+|.+ ..+++.|.||+|++-|++....-..+..  ....+.++.|+.+...++.+..=|...+||+++... ...+
T Consensus       239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~  318 (498)
T KOG4328|consen  239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL  318 (498)
T ss_pred             ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh
Confidence            99999966 4789999999999999987654444433  555677888988888888888888999999987655 5666


Q ss_pred             cccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          502 AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      .-|...|..|+++|.. .+|+|++.|++.+|||++.-.    ++-....|...|.+..|||.|..|+|.+.|..|+|||.
T Consensus       319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            7788899999999965 578899999999999998532    22334579999999999999888999999999999998


Q ss_pred             C----CCeeeEEeeCCCc------ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCC
Q 005913          577 A----SGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS  646 (670)
Q Consensus       577 ~----~~~~~~~~~~h~~------~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (670)
                      .    .-.+...+. |..      ......|.|+.+++++|-.-..|-|+|-..+..+...              .....
T Consensus       399 s~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el--------------~~P~~  463 (498)
T KOG4328|consen  399 SCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL--------------HDPES  463 (498)
T ss_pred             ccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec--------------cCccc
Confidence            3    223333332 221      2345689999999999999999999997776432111              11222


Q ss_pred             CCeEEE-EEecCCcEEEEeeCC
Q 005913          647 TPVYSL-QFSRRNLLFAAGALS  667 (670)
Q Consensus       647 ~~V~~l-~fs~~~~~La~gs~d  667 (670)
                      ..|.++ +|+|.+..+++|+..
T Consensus       464 ~tI~~vn~~HP~~~~~~aG~~s  485 (498)
T KOG4328|consen  464 STIPSVNEFHPMRDTLAAGGNS  485 (498)
T ss_pred             cccccceeecccccceeccCCc
Confidence            234443 789998866666543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=3.8e-20  Score=198.82  Aligned_cols=314  Identities=18%  Similarity=0.296  Sum_probs=245.5

Q ss_pred             HcccceecCCCCCCceeE---EEeecCCC-CEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCC
Q 005913          327 DLRNRVHLSSAALPSVSF---YTFINTHN-GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP  400 (670)
Q Consensus       327 ~~~~~~~l~~~~~ps~~~---~t~~~~~~-~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~  400 (670)
                      +.++.+++|....+....   .++....+ .|+++. +|.  =+-++.|+..|.++||++.+                  
T Consensus       131 d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt------------------  191 (910)
T KOG1539|consen  131 DISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRT------------------  191 (910)
T ss_pred             EccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEecc------------------
Confidence            445677788766642221   23333333 376664 453  46689999999999999986                  


Q ss_pred             CccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE-EE
Q 005913          401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FA  479 (670)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~-l~  479 (670)
                                .+.+..+.++...|+++.=+|-=+.++.|..+|+|.+++++.++.+..++...++|++++|.-||.. ++
T Consensus       192 ----------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~la  261 (910)
T KOG1539|consen  192 ----------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLA  261 (910)
T ss_pred             ----------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEE
Confidence                      4577888899999999999999999999999999999999999999999966799999999999976 56


Q ss_pred             EEECCCcEEEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-----------------EEE
Q 005913          480 SSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-----------------CVR  541 (670)
Q Consensus       480 s~s~dg~v~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-----------------~~~  541 (670)
                      +|+..|.+.+||++..+.+..+. .|.+.|....|.|....+++.+.|..+++|=..++.                 +++
T Consensus       262 s~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ir  341 (910)
T KOG1539|consen  262 SGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIR  341 (910)
T ss_pred             eccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhee
Confidence            66677999999999887776665 787888888888888888888888877776322110                 000


Q ss_pred             EE------------------------------------------------------------------------------
Q 005913          542 IF------------------------------------------------------------------------------  543 (670)
Q Consensus       542 ~~------------------------------------------------------------------------------  543 (670)
                      .+                                                                              
T Consensus       342 fy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~  421 (910)
T KOG1539|consen  342 FYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK  421 (910)
T ss_pred             eeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence            00                                                                              


Q ss_pred             -----------------ecCC------CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe---eCCCcceEEEEE
Q 005913          544 -----------------IGHR------SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL---MGHTSCVWTLAY  597 (670)
Q Consensus       544 -----------------~~h~------~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~---~~h~~~V~sl~~  597 (670)
                                       -.+.      ..+++++.+++|++.+.|...|.|-+|++.+|-....+   ..|.++|++++.
T Consensus       422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~  501 (910)
T KOG1539|consen  422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV  501 (910)
T ss_pred             ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe
Confidence                             0122      56889999999999999999999999999999988888   489999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCcccccccccc--------------------------CCcccccccccCCCCCCeEE
Q 005913          598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS--------------------------GTNRLRSLKTLPTKSTPVYS  651 (670)
Q Consensus       598 s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~V~~  651 (670)
                      ..-++.+++++.+|.+++||+.............                          .......++.+.+|...|++
T Consensus       502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd  581 (910)
T KOG1539|consen  502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD  581 (910)
T ss_pred             cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence            9889999999999999999998866332221100                          01112345678899999999


Q ss_pred             EEEecCCcEEEEeeCCCC
Q 005913          652 LQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       652 l~fs~~~~~La~gs~dgs  669 (670)
                      +.|||+|++|++++.|++
T Consensus       582 ~~FS~DgrWlisasmD~t  599 (910)
T KOG1539|consen  582 MTFSPDGRWLISASMDST  599 (910)
T ss_pred             eEeCCCCcEEEEeecCCc
Confidence            999999999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=2.2e-21  Score=196.89  Aligned_cols=290  Identities=17%  Similarity=0.219  Sum_probs=224.2

Q ss_pred             cccceecCCCC-CCceeEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913          328 LRNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (670)
Q Consensus       328 ~~~~~~l~~~~-~ps~~~~t~~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (670)
                      ..+.+.||+.+ +....+|..+...-++.++.|+....++ |+.+.|..|++|.-....                     
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~---------------------   68 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT---------------------   68 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC---------------------
Confidence            34566777653 3344455555556679999999876432 334567889999865410                     


Q ss_pred             CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                         ..........|.  .-.|++......++++|+..++|+|||++...+.+.+++|...|+++.++....|||+++..|
T Consensus        69 ---~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG  143 (673)
T KOG4378|consen   69 ---PEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG  143 (673)
T ss_pred             ---Cccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC
Confidence               001122222232  334555555558999999999999999997778888999999999999999999999999999


Q ss_pred             cEEEEECCCCceeEEeccc-CCCeeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEE-ecCCCCeEEEEEcCC-CCE
Q 005913          486 TARIWSMDRIQPLRIMAGH-LSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPD-GRY  561 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp~-g~~  561 (670)
                      .|.|..+.++.....|... ...|.-+.|+|..+.+ .+++.+|.|.+||+....++..+ ..|..+...|+|+|. ..+
T Consensus       144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l  223 (673)
T KOG4378|consen  144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL  223 (673)
T ss_pred             cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence            9999999988777777644 3446689999987755 56888999999999877766544 579999999999994 567


Q ss_pred             EEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccc
Q 005913          562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT  641 (670)
Q Consensus       562 l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  641 (670)
                      |++.+.|..|.+||.++.+....+. ...+..+++|+++|.+|+.|+..|.|..||++...              .++..
T Consensus       224 ~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--------------~Pv~v  288 (673)
T KOG4378|consen  224 LVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--------------APVAV  288 (673)
T ss_pred             EEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--------------CCceE
Confidence            8899999999999999776665553 45678999999999999999999999999998854              35677


Q ss_pred             cCCCCCCeEEEEEecCC
Q 005913          642 LPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       642 ~~~~~~~V~~l~fs~~~  658 (670)
                      ...|...|++++|-|.-
T Consensus       289 ~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  289 RSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eeecccceeEEEeeecc
Confidence            78888899999998875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=1.9e-20  Score=197.48  Aligned_cols=290  Identities=22%  Similarity=0.336  Sum_probs=224.6

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +.+|.+-|.++.|+|.+..|.+++.|.++.||.-......-..                     .-.+-...|..+..++
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~---------------------~vRlGe~gg~a~GF~g  321 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD---------------------VVRLGEVGGSAGGFWG  321 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE---------------------EEEeecccccccceee
Confidence            3589999999999999999999999999999986542110000                     0011112245577899


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC---------
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---------  494 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~---------  494 (670)
                      .-|+|+++.+++-+..|..++|.....   .....+.||...|.+++|+|.|.+++++|.|.+-|++---.         
T Consensus       322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia  401 (764)
T KOG1063|consen  322 GLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA  401 (764)
T ss_pred             EEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec
Confidence            999999999999999999999983322   33456789999999999999999999999999888863210         


Q ss_pred             -Cc-----------------------------------------------------------------------------
Q 005913          495 -IQ-----------------------------------------------------------------------------  496 (670)
Q Consensus       495 -~~-----------------------------------------------------------------------------  496 (670)
                       ++                                                                             
T Consensus       402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~  481 (764)
T KOG1063|consen  402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT  481 (764)
T ss_pred             ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence             00                                                                             


Q ss_pred             -----------------------------------eeEEecccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCC
Q 005913          497 -----------------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSS  536 (670)
Q Consensus       497 -----------------------------------~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~  536 (670)
                                                         .+..+.||...|.|++.+|+++.+|+++..     ..|++|+..+
T Consensus       482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~  561 (764)
T KOG1063|consen  482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN  561 (764)
T ss_pred             ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence                                               012244788899999999999999998754     3699999999


Q ss_pred             CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCc
Q 005913          537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCT  612 (670)
Q Consensus       537 ~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~  612 (670)
                      ...+..+.+|.-.|+.++|||||++|++.+.|.++.+|......    .....+.|+.-|++++|+|++.+++|+|.|.+
T Consensus       562 W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  562 WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK  641 (764)
T ss_pred             hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence            99999999999999999999999999999999999999875432    22336789999999999999999999999999


Q ss_pred             EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC-----CcEEEEeeCCC
Q 005913          613 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR-----NLLFAAGALSK  668 (670)
Q Consensus       613 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~-----~~~La~gs~dg  668 (670)
                      |+||........          ....+ .......+|++++|.|-     +.++++|-..|
T Consensus       642 VkVW~~~~~~d~----------~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G  691 (764)
T KOG1063|consen  642 VKVWEEPDLRDK----------YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG  691 (764)
T ss_pred             EEEEeccCchhh----------hhhhh-chhccCCceeeEEeeccccccccceEEEEeccc
Confidence            999998876311          00111 23356678999988762     23677776554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=5.4e-22  Score=220.41  Aligned_cols=234  Identities=23%  Similarity=0.387  Sum_probs=192.6

Q ss_pred             ccCEEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC------ceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEE
Q 005913          421 SGPVYSASFSPLGDF----ILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARI  489 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~----L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~l  489 (670)
                      ....+.++|.+.+..    |+.|..||.|.+||...-      ..+..+..|.++|..+.|++.. +.+|+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            356788999998775    888999999999998752      2355677899999999999954 59999999999999


Q ss_pred             EECCCCceeEEec--ccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC--CeEEEEEcCCCC-EEE
Q 005913          490 WSMDRIQPLRIMA--GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGR-YMA  563 (670)
Q Consensus       490 wd~~~~~~~~~~~--~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~--~I~~l~~sp~g~-~l~  563 (670)
                      ||+.+.+.-....  ...+.|.|++|+. ....|++++.+|.+.|||++..+.+..+..+.+  .+..++|+|++. .|+
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            9998755443332  2457899999985 456788899999999999999988877766654  477899999764 555


Q ss_pred             EEECC---CeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          564 SGDED---GTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       564 sg~~d---g~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      +++.|   -.|.+||++.. .+++.+++|...|.++.|++.+ .+|++++.|+.|.+|+..+++               .
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE---------------v  288 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE---------------V  288 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce---------------E
Confidence            55544   36999999854 5778888999999999999965 899999999999999999975               3


Q ss_pred             ccccCCCCCCeEEEEEecCCc-EEEEeeCCCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT  669 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~-~La~gs~dgs  669 (670)
                      +..+++....++.+.|+|.+. +++++++||.
T Consensus       289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk  320 (1049)
T KOG0307|consen  289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGK  320 (1049)
T ss_pred             eeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence            667888888999999999987 8899999884

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.6e-21  Score=216.56  Aligned_cols=254  Identities=22%  Similarity=0.432  Sum_probs=209.4

Q ss_pred             ecCCCCEEEEEEcCCCCE----EEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          348 INTHNGLNCASISQDGSL----VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~----La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      +.....-+.++|++.|..    +|.|..||.|.+|+.....                      .+.....+.....|+++
T Consensus        61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----------------------~~~~~~~la~~~~h~G~  118 (1049)
T KOG0307|consen   61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----------------------ANASEEVLATKSKHTGP  118 (1049)
T ss_pred             ccccccceeeeecccCCCccceeeccccCCceEEecchhhc----------------------cCcchHHHhhhcccCCc
Confidence            344556788999987766    8999999999999976420                      11223456677889999


Q ss_pred             EEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeE
Q 005913          424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       424 V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      |.++.|++... .||+|+.||.|.|||+...+.-..+.  .....|.+++|+. ..+.|++++.+|.+.|||++..+++-
T Consensus       119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII  198 (1049)
T ss_pred             eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence            99999999776 99999999999999998755444442  2456799999998 46678999999999999999998888


Q ss_pred             EecccCC--CeeEEEEcCCC-CEEEEEEcCC---cEEEEECCC-CcEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeE
Q 005913          500 IMAGHLS--DVDCVRWHINC-NYIATGSSDK---TVRLWDVSS-GECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTI  571 (670)
Q Consensus       500 ~~~~~~~--~v~~v~~~p~~-~~l~tgs~dg---~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I  571 (670)
                      .+..+.+  .+..++|||+. ..|++++.|.   .|.+||+|. ..+++++++|...|.++.|++.+ .+|++++.|+.|
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i  278 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI  278 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence            8876655  36789999986 4566666543   699999985 45678889999999999999966 899999999999


Q ss_pred             EEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCcc
Q 005913          572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      .+|+..+++.+..+......+..+.|+|... .+++++.||.|.|+.+.....
T Consensus       279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence            9999999999999988888999999999654 899999999999999987653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=1.2e-20  Score=197.28  Aligned_cols=270  Identities=19%  Similarity=0.280  Sum_probs=201.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (670)
Q Consensus       362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~  441 (670)
                      ....||.+..||.|.++|.......                      .+...+.....|.+.|..+.|.|....|++++.
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr----------------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasG  120 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFR----------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASG  120 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcc----------------------hhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence            4567999999999999997642111                      123455677889999999999996668999999


Q ss_pred             CCeEEEEeCCCCceeEE--eeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc--------------------e-
Q 005913          442 DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--------------------P-  497 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~--------------------~-  497 (670)
                      |.++++||+.+.+.+..  +.+|.+.|.+++|.| +...|++|+.||.+.|||++-..                    + 
T Consensus       121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps  200 (720)
T KOG0321|consen  121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS  200 (720)
T ss_pred             CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence            99999999999888766  899999999999999 45679999999999999986211                    1 


Q ss_pred             ------eEEecccCCCeeE---EEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEE--------EecC---CCCeEEEEEc
Q 005913          498 ------LRIMAGHLSDVDC---VRWHINCNYIATGSS-DKTVRLWDVSSGECVRI--------FIGH---RSMILSLAMS  556 (670)
Q Consensus       498 ------~~~~~~~~~~v~~---v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~--------~~~h---~~~I~~l~~s  556 (670)
                            ++....+...|..   +.+..|...||+++. |+.|++||++...+...        +..|   ...++++...
T Consensus       201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD  280 (720)
T KOG0321|consen  201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD  280 (720)
T ss_pred             chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence                  1112234444444   555578888998877 99999999997654322        1222   2357888888


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCC--eeeEEeeCCCc-ce-EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccC
Q 005913          557 PDGRYMASGDEDGTIMMWDLASG--RCVTPLMGHTS-CV-WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG  632 (670)
Q Consensus       557 p~g~~l~sg~~dg~I~iwDl~~~--~~~~~~~~h~~-~V-~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  632 (670)
                      ..|.+|++.+.|+.|++|++.+-  .++..+.++.. .+ ..-..+|++.+|++|+.|....+|.+.+...         
T Consensus       281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~---------  351 (720)
T KOG0321|consen  281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA---------  351 (720)
T ss_pred             CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC---------
Confidence            88999999889999999999864  34444444432 11 1234589999999999999999999988653         


Q ss_pred             CcccccccccCCCCCCeEEEEEecC--CcEEEEeeCCC
Q 005913          633 TNRLRSLKTLPTKSTPVYSLQFSRR--NLLFAAGALSK  668 (670)
Q Consensus       633 ~~~~~~~~~~~~~~~~V~~l~fs~~--~~~La~gs~dg  668 (670)
                           ....+.+|...|++++|.|.  ..+ |+++.|-
T Consensus       352 -----~~~~l~Ght~eVt~V~w~pS~~t~v-~TcSdD~  383 (720)
T KOG0321|consen  352 -----PPALLLGHTREVTTVRWLPSATTPV-ATCSDDF  383 (720)
T ss_pred             -----ChhhhhCcceEEEEEeeccccCCCc-eeeccCc
Confidence                 24456678888999999774  444 4446653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.5e-20  Score=190.08  Aligned_cols=236  Identities=19%  Similarity=0.375  Sum_probs=198.7

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCce
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      .++|+++.|+|....|++|+.||+++||.+....  .+..+.-...||.+.+|.|+|+ .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4789999999999999999999999999887443  4555555688999999999999 899999999999999987764


Q ss_pred             eEE--ecccC-CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913          498 LRI--MAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       498 ~~~--~~~~~-~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw  574 (670)
                      ...  ..++. ..+.....+|++++|+..+..|.|.+....+++.+..+. -.+.|..++|+.+|+.|++++.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            432  33333 346778889999999999999999999999999998886 45789999999999999999999999999


Q ss_pred             eCCCCeeeEEeeCCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913          575 DLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ  653 (670)
Q Consensus       575 Dl~~~~~~~~~~~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  653 (670)
                      |++...++.++.... -.-++++.|++|.+||+|+..|.|.|||..+...         ...+.++.++..-.+.|.+++
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~---------s~~PkPik~~dNLtt~Itsl~  442 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA---------STNPKPIKTVDNLTTAITSLQ  442 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhc---------cCCCCchhhhhhhheeeeeee
Confidence            999999998886432 1235788889999999999999999999776432         123456778888888999999


Q ss_pred             EecCCcEEEEeeC
Q 005913          654 FSRRNLLFAAGAL  666 (670)
Q Consensus       654 fs~~~~~La~gs~  666 (670)
                      |+++.++||.+|.
T Consensus       443 Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  443 FNHDAQILAIASR  455 (514)
T ss_pred             eCcchhhhhhhhh
Confidence            9999999998875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=4.2e-20  Score=184.30  Aligned_cols=285  Identities=17%  Similarity=0.285  Sum_probs=212.3

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          350 THNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      .+.+|.++.|.+++. .+|+|+.|..|+||.+........                   .........+..|...|+++.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------------~~~V~y~s~Ls~H~~aVN~vR   72 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------------DMKVEYLSSLSRHTRAVNVVR   72 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------------ceeEEEeecccCCcceeEEEE
Confidence            456899999998766 999999999999999875211100                   012335567889999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCC--------C--------CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          429 FSPLGDFILSSSADTTIRLWSTK--------L--------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~--------~--------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      |+|+|+.|++|+.+|.|.+|-..        +        +...+...+|...|..++|+|++.++++++.|.++++||+
T Consensus        73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv  152 (434)
T KOG1009|consen   73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV  152 (434)
T ss_pred             EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence            99999999999999999999765        2        2234567789999999999999999999999999999999


Q ss_pred             CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-------------------cCCC----C
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-------------------GHRS----M  549 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------------------~h~~----~  549 (670)
                      ..++....+..|...|..++|.|-++++++-+.|...+.+++...+.+....                   -|..    -
T Consensus       153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF  232 (434)
T KOG1009|consen  153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF  232 (434)
T ss_pred             ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence            9999999999999999999999999999999999877777765433221110                   0111    2


Q ss_pred             eEEEEEcCCCCEEEEEEC----C-----CeEEEEeCC-CCeeeEEeeCCCcceEEEEEcC------------------CC
Q 005913          550 ILSLAMSPDGRYMASGDE----D-----GTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSC------------------EG  601 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~----d-----g~I~iwDl~-~~~~~~~~~~h~~~V~sl~~s~------------------~g  601 (670)
                      ...++|+|+|.+|++...    .     +..++|+-. ..++...+.....++..+.|+|                  -+
T Consensus       233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr  312 (434)
T KOG1009|consen  233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR  312 (434)
T ss_pred             hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence            456789999999988531    2     233455533 2244455555555555555554                  12


Q ss_pred             CEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          602 SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       602 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      -.++.++ .+.|.|||.....+..              ..-.-|-.+|+.++|+++|..|+..|.||
T Consensus       313 lvfaiAt-~~svyvydtq~~~P~~--------------~v~nihy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  313 LVFAIAT-KNSVYVYDTQTLEPLA--------------VVDNIHYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             eEEEEee-cceEEEeccccccceE--------------EEeeeeeeeecceeecCCCcEEEEeccCC
Confidence            2344554 4589999988755431              11234667899999999999999999997

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=4.3e-20  Score=193.11  Aligned_cols=266  Identities=23%  Similarity=0.365  Sum_probs=212.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      .|..++|-|||+.|+.+ .+..+.|||.+.                            +.....+++|...|+|++|+.+
T Consensus        14 ci~d~afkPDGsqL~lA-Ag~rlliyD~nd----------------------------G~llqtLKgHKDtVycVAys~d   64 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-AGSRLLVYDTSD----------------------------GTLLQPLKGHKDTVYCVAYAKD   64 (1081)
T ss_pred             chheeEECCCCceEEEe-cCCEEEEEeCCC----------------------------cccccccccccceEEEEEEccC
Confidence            68999999999999888 566899999875                            3466778999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~  512 (670)
                      |..+++|+.|..|.+|+-.... +..| +|+..|.|+.|+|-.+.+++++-. ..-+|+.+.......  .....+.+++
T Consensus        65 GkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~--kss~R~~~Cs  139 (1081)
T KOG1538|consen   65 GKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH--KSSSRIICCS  139 (1081)
T ss_pred             CceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh--hhheeEEEee
Confidence            9999999999999999976433 3334 489999999999999999999863 467898775433221  2346788999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCC-----CEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDG-----RYMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g-----~~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      |..||.+++.|-.+|+|.+-+-.....++.-.  +...+|.+++|+|..     ..+++.....++.++.+ +|+.+..-
T Consensus       140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~  218 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKD  218 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccc
Confidence            99999999999999999998754333333322  466799999999953     37788888888888886 45555443


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      +.-.-...++++.++|.++..||.|+.+++|--+.                -.+.+.....+.|+.++..|+++..+.|+
T Consensus       219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----------------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GC  282 (1081)
T KOG1538|consen  219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----------------VRLGTVGEQDSWIWTVQAKPNSQYVVVGC  282 (1081)
T ss_pred             ccCCCCchhheeccCCcEEEEccCCCceEEEeecC----------------eEEeeccccceeEEEEEEccCCceEEEEE
Confidence            43444557889999999999999999999996544                23456666788999999999999999999


Q ss_pred             CCCC
Q 005913          666 LSKT  669 (670)
Q Consensus       666 ~dgs  669 (670)
                      -|||
T Consensus       283 qDGT  286 (1081)
T KOG1538|consen  283 QDGT  286 (1081)
T ss_pred             ccCe
Confidence            9997

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.6e-20  Score=178.97  Aligned_cols=236  Identities=16%  Similarity=0.256  Sum_probs=183.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      ..|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..||++++||++|+.|+++|.|..+.+||+..+.++..+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            7899999999999999999999999999999889999999999999999999999999999999999999999988887 


Q ss_pred             cCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecCCC----CeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          504 HLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRS----MILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       504 ~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~----~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      ..++|..+.|||.. +..++.-.+..-.+.++..+.....-....+    .-.+..|.+.|+++++|...|.+.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            56899999999854 4444444455556666654322211111111    123346889999999999999999999999


Q ss_pred             CeeeEEeeCCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccC--CCCCCeEEEEEe
Q 005913          579 GRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP--TKSTPVYSLQFS  655 (670)
Q Consensus       579 ~~~~~~~~~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~V~~l~fs  655 (670)
                      -+++..++-.+ ..|.++-++..|+.|+.-+.|..||.|++..-....      ....+.+...+.  ....+-.++.||
T Consensus       185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~------r~~e~e~~~K~qDvVNk~~Wk~ccfs  258 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG------RDGEVEPEHKLQDVVNKLQWKKCCFS  258 (405)
T ss_pred             heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC------ccCCcChhHHHHHHHhhhhhhheeec
Confidence            99999887666 789999999999999999999999999987321110      000011111111  123345688999


Q ss_pred             cCCcEEEEeeC
Q 005913          656 RRNLLFAAGAL  666 (670)
Q Consensus       656 ~~~~~La~gs~  666 (670)
                      .+|.++++|+.
T Consensus       259 ~dgeYv~a~s~  269 (405)
T KOG1273|consen  259 GDGEYVCAGSA  269 (405)
T ss_pred             CCccEEEeccc
Confidence            99999999884

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.6e-20  Score=185.92  Aligned_cols=200  Identities=23%  Similarity=0.378  Sum_probs=163.5

Q ss_pred             EEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCce---eE------------------EeeCCCccEeEEEEecC-
Q 005913          424 VYSASFSP-------LGDFILSSSADTTIRLWSTKLNAN---LV------------------CYKGHNYPVWDVQFNPQ-  474 (670)
Q Consensus       424 V~~l~~sp-------~~~~L~s~s~Dg~I~lwd~~~~~~---~~------------------~~~~h~~~V~~l~~sp~-  474 (670)
                      -.|+.|..       -|+++|.|+.|..|.|||+.-...   ..                  .-.+|+..|.++.|+.. 
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            34666643       267999999999999999863211   01                  12368888889999874 


Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEE
Q 005913          475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL  553 (670)
Q Consensus       475 g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l  553 (670)
                      .+.||+||.|.+|.+||+.+++|..++..|...|.++.|||. ..+|++|+.|++|.+.|+|...+....-.-.+.|-.+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence            567999999999999999999999999999999999999985 5789999999999999999533332222345779999


Q ss_pred             EEcCCC-CEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcc
Q 005913          554 AMSPDG-RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       554 ~~sp~g-~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +|.|.. ..+++++.||+++-+|++.. +++.++..|.++|.++++++. ..++++++.|+.|++|++.....
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            999965 46777889999999999965 899999999999999999874 46899999999999999987543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=4.8e-20  Score=191.81  Aligned_cols=150  Identities=22%  Similarity=0.381  Sum_probs=120.5

Q ss_pred             eeEEEEcC-CCCEEEEEEcCCcEEEEECCCC-------cEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCC
Q 005913          508 VDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       508 v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      |+.+.|.| |...|++++.||.|++|.+..+       .+...+..|...|+++.|+| -...|++++.|.+|++||+++
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            34445554 3456999999999999998754       34567789999999999999 456899999999999999999


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      ++....+.+|++.|.+++|||+|+.+++.+.||+|+||+-.+........             -....+.--.+.|--+|
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg-------------~gpvgtRgARi~wacdg  776 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG-------------KGPVGTRGARILWACDG  776 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccC-------------CCCccCcceeEEEEecC
Confidence            99999999999999999999999999999999999999988765321110             00112334567889999


Q ss_pred             cEEEEeeCCCCC
Q 005913          659 LLFAAGALSKTS  670 (670)
Q Consensus       659 ~~La~gs~dgs~  670 (670)
                      +++++.++|+++
T Consensus       777 r~viv~Gfdk~S  788 (1012)
T KOG1445|consen  777 RIVIVVGFDKSS  788 (1012)
T ss_pred             cEEEEecccccc
Confidence            999999888753

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=5.1e-20  Score=192.60  Aligned_cols=253  Identities=21%  Similarity=0.328  Sum_probs=191.1

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      ++.+..|.+.|..+.|-|....|++++.|.++++||+......                          -...+.||.+.
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~--------------------------G~~~~~GH~~S  146 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV--------------------------GGRLNLGHTGS  146 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee--------------------------cceeecccccc
Confidence            4567788999999999997788999999999999999863221                          22357899999


Q ss_pred             EEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce---------------------------eEEeeCCCccEeE---EEEe
Q 005913          424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNAN---------------------------LVCYKGHNYPVWD---VQFN  472 (670)
Q Consensus       424 V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~---------------------------~~~~~~h~~~V~~---l~~s  472 (670)
                      |.+++|.|.+. .+++|+.||.|.|||++-...                           +...+.+...|.+   +.+.
T Consensus       147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f  226 (720)
T KOG0321|consen  147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF  226 (720)
T ss_pred             cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence            99999999776 678999999999999863320                           0111224444555   6666


Q ss_pred             cCCCEEEEEEC-CCcEEEEECCCCcee------EEe--ccc---CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--
Q 005913          473 PQGHYFASSSH-DRTARIWSMDRIQPL------RIM--AGH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--  538 (670)
Q Consensus       473 p~g~~l~s~s~-dg~v~lwd~~~~~~~------~~~--~~~---~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--  538 (670)
                      .|...||++|. |+.|++||+++....      ...  ..|   .-.+.++.....|++|++.+.|+.|++|++.+-.  
T Consensus       227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s  306 (720)
T KOG0321|consen  227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS  306 (720)
T ss_pred             eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence            78889999987 999999999865432      221  222   2346778878888999999999999999998543  


Q ss_pred             EEEEEecCCCC--eEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEE
Q 005913          539 CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVK  614 (670)
Q Consensus       539 ~~~~~~~h~~~--I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~  614 (670)
                      ++..+.++...  -..-..+|++.++++|+.|+..++|.+.+-. ....+.+|.-.|++++|.|. -.-+++++.|.+++
T Consensus       307 P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k  386 (720)
T KOG0321|consen  307 PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK  386 (720)
T ss_pred             chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence            34444443321  1223468999999999999999999998754 45567799999999999883 23477779999999


Q ss_pred             EEeCCCCc
Q 005913          615 LWDVTTST  622 (670)
Q Consensus       615 iwd~~~~~  622 (670)
                      ||++..+.
T Consensus       387 iW~l~~~l  394 (720)
T KOG0321|consen  387 IWRLSNGL  394 (720)
T ss_pred             EEeccCch
Confidence            99996653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.3e-20  Score=194.98  Aligned_cols=258  Identities=21%  Similarity=0.313  Sum_probs=201.8

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      +|+..|.+.|+.++|.|-...|++|+.||.|++|+++.....                    .......+..+.+|.++|
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--------------------~~~~~epi~tfraH~gPV  347 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--------------------AEKDVEPILTFRAHEGPV  347 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--------------------cccceeeeEEEecccCce
Confidence            378888999999999999999999999999999999531100                    112245778899999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      .|++..+++..+++|+.||+|+.|++...          ....++.||...||.+++|+....|++++.||++++|+...
T Consensus       348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence            99999999999999999999999966521          12356789999999999999999999999999999999887


Q ss_pred             CceeEEecccC--CCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecC-------CCCeEEEEEcCCCCEEEE
Q 005913          495 IQPLRIMAGHL--SDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH-------RSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       495 ~~~~~~~~~~~--~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------~~~I~~l~~sp~g~~l~s  564 (670)
                      ..+ ..+....  +....+.+-... ...++...-+.-.+++...+..+..+...       ...+..+.++|.+.+.++
T Consensus       428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~  506 (577)
T KOG0642|consen  428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT  506 (577)
T ss_pred             cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence            766 3333221  233444443222 12222223333444555555555554322       134677889999999999


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +..|+.|+++|..++..+..+..|...++++++.|+|.+|++|+.||.+++|.+.....
T Consensus       507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             cccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            99999999999999999999999999999999999999999999999999999876543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6e-19  Score=186.10  Aligned_cols=238  Identities=18%  Similarity=0.332  Sum_probs=199.7

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      +.+.-...+|.+++|+.+.+.||.+-.||+|-+|++...=. ...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+
T Consensus        19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL   97 (691)
T ss_pred             EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence            34445568999999999999999999999999999986533 3444544 6679999999 4556888889999999999


Q ss_pred             CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE--EEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV--RIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                      .++++...+....+.|.+++.+|.+..++.|+.||.+..++...++..  +.+....+.|.++.|+|++..|++|+.||.
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~  177 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV  177 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence            999999999999999999999999999999999998888888777654  445556689999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEee--------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913          571 IMMWDLASGRCVTPLM--------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL  642 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~--------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  642 (670)
                      |++||..++..+....        +...-|+++.|-.+ ..|++|.+-|+|.+||-..++               ++..+
T Consensus       178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gT---------------LiqS~  241 (691)
T KOG2048|consen  178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGT---------------LIQSH  241 (691)
T ss_pred             EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcc---------------hhhhh
Confidence            9999999988766221        12345788887755 479999999999999988875               45677


Q ss_pred             CCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          643 PTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       643 ~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ..|...|.+++.++++..+.+|+.|+.
T Consensus       242 ~~h~adVl~Lav~~~~d~vfsaGvd~~  268 (691)
T KOG2048|consen  242 SCHDADVLALAVADNEDRVFSAGVDPK  268 (691)
T ss_pred             hhhhcceeEEEEcCCCCeEEEccCCCc
Confidence            788899999999999999999998874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=6.7e-18  Score=180.94  Aligned_cols=281  Identities=36%  Similarity=0.633  Sum_probs=224.5

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPV  424 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V  424 (670)
                      ....+...+.++.|.+.+..++.++.|+.+.+|+.....                           .....+.++. ..+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~  112 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---------------------------KLIKSLEGLHDSSV  112 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---------------------------eeEEEEeccCCCce
Confidence            356678889999999999999999999999999987521                           1233333433 367


Q ss_pred             EEEEE-cCCCC-EEEEEeC-CCeEEEEeCCC-CceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCcEEEEECCCCceeE
Q 005913          425 YSASF-SPLGD-FILSSSA-DTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLR  499 (670)
Q Consensus       425 ~~l~~-sp~~~-~L~s~s~-Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~~~~~~~  499 (670)
                      ..+.+ ++++. .++.++. |+.+.+|+... ......+..|...|..+.|+|++.++++++. |+.+++|+...+..+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
T COG2319         113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS  192 (466)
T ss_pred             eeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence            77777 78787 5555444 99999999998 7788889999999999999999998888886 9999999999988999


Q ss_pred             EecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          500 IMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                      .+.+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+.+|.... ...|+|++.++++++.|+.+++||+.
T Consensus       193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            9999999999999999998 55555899999999999888888 688888775 44899999999999999999999998


Q ss_pred             CCee-eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          578 SGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       578 ~~~~-~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                      .... +..+.+|...|.++.|+|++..+++++.|+.+.+|+..........            . ...+...|..+.|.+
T Consensus       272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~  338 (466)
T COG2319         272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL------------T-LKGHEGPVSSLSFSP  338 (466)
T ss_pred             CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe------------e-ecccCCceEEEEECC
Confidence            7665 4445678899999999998888988999999999988775432111            1 224455788888843


Q ss_pred             CCcEEEEe-eCC
Q 005913          657 RNLLFAAG-ALS  667 (670)
Q Consensus       657 ~~~~La~g-s~d  667 (670)
                      ++..++.+ ..|
T Consensus       339 ~~~~~~~~~~~d  350 (466)
T COG2319         339 DGSLLVSGGSDD  350 (466)
T ss_pred             CCCEEEEeecCC
Confidence            32455544 444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=4.7e-20  Score=187.34  Aligned_cols=241  Identities=16%  Similarity=0.295  Sum_probs=196.8

Q ss_pred             ceecCC--CCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          331 RVHLSS--AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       331 ~~~l~~--~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      .+.+|.  ..+|.++.....+.. .-.|++......++++|+..++|+|||+..                          
T Consensus        58 ~~~~~~K~g~~~~Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--------------------------  110 (673)
T KOG4378|consen   58 VMRIKEKDGKTPEVPRVRKLTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRA--------------------------  110 (673)
T ss_pred             eEEEecccCCCCccceeeccccc-hHHHHhhhhcceeeeccCcCceeeehhhHH--------------------------
Confidence            444553  345555554444333 444555545558999999999999999874                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCC-EEEEEECCCc
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGH-YFASSSHDRT  486 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~-~l~s~s~dg~  486 (670)
                        ....+.+.+|...|+++.++....+||+++..|.|.|..+.++.....+... ...|.-+.|+|..+ .|.+++.+|.
T Consensus       111 --kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~  188 (673)
T KOG4378|consen  111 --KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA  188 (673)
T ss_pred             --HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCe
Confidence              3466778999999999999999999999999999999999998887777754 45567899999654 5677899999


Q ss_pred             EEEEECCCCceeEEe-cccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          487 ARIWSMDRIQPLRIM-AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       487 v~lwd~~~~~~~~~~-~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      |.+||+....++..+ ..|..+...|+|+|.. ..|++.+.|+.|.+||++..+....+. ...+.+.++|+++|.+|++
T Consensus       189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~a  267 (673)
T KOG4378|consen  189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCA  267 (673)
T ss_pred             EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEe
Confidence            999999988887665 4799999999999854 577889999999999999877776664 5578999999999999999


Q ss_pred             EECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCC
Q 005913          565 GDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEG  601 (670)
Q Consensus       565 g~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g  601 (670)
                      |...|.|..||++.. .++..+..|...|++++|-|..
T Consensus       268 G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  268 GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            999999999999854 6788889999999999997754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=1e-19  Score=188.98  Aligned_cols=240  Identities=25%  Similarity=0.373  Sum_probs=198.6

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE--EEEEECCCcEEEE
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY--FASSSHDRTARIW  490 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~--l~s~s~dg~v~lw  490 (670)
                      ....+.||++.|.+++..|.|.+|++|+.||+|+||.+.++.|+..+.- .+.|.||+|+|.+..  ||++-. ..+.|.
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~-~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVG-ECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEec-CceEEe
Confidence            4567889999999999999999999999999999999999999988874 457999999996543  444332 334444


Q ss_pred             ECCCC-------------------------------------ceeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEE
Q 005913          491 SMDRI-------------------------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVR  530 (670)
Q Consensus       491 d~~~~-------------------------------------~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~  530 (670)
                      +..-|                                     .-++....|...|..|.||..|.||++...+   ..|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            32100                                     0123444588899999999999999997653   5799


Q ss_pred             EEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913          531 LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (670)
Q Consensus       531 iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D  610 (670)
                      |.++.......-|....+.|.++.|+|...+|++++. ..|+|||+.....++.+......|.+++.+|.|.-|+.|+.|
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence            9999887777677667788999999999999988875 679999999988888887777889999999999999999999


Q ss_pred             CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          611 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       611 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      +.++.+|+.-+.+              ...++..|...|.+|+|++.-.++|+|+.||+
T Consensus       629 ~k~~WfDldlssk--------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  629 KKMCWFDLDLSSK--------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT  673 (733)
T ss_pred             CeeEEEEcccCcc--------------hhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence            9999999988653              35567788889999999999999999999986

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=3.4e-19  Score=170.34  Aligned_cols=255  Identities=21%  Similarity=0.364  Sum_probs=189.6

Q ss_pred             ceeeeecCccCEEEEEEcCCCC-EEEEEeCC-------CeEEEEeCCCC---------ceeEEee-CCCccEeEEEEecC
Q 005913          413 SYTLYQGHSGPVYSASFSPLGD-FILSSSAD-------TTIRLWSTKLN---------ANLVCYK-GHNYPVWDVQFNPQ  474 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~D-------g~I~lwd~~~~---------~~~~~~~-~h~~~V~~l~~sp~  474 (670)
                      ....+..|.+.|..++-+|-.. .|+++..+       ..+.||.+...         +++..+. .+-+.|.|+.|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            3445667889999999999665 45555432       24779987633         2233333 34558999999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCce-eEEec-----ccCCCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEE-ec
Q 005913          475 GHYFASSSHDRTARIWSMDRIQP-LRIMA-----GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIF-IG  545 (670)
Q Consensus       475 g~~l~s~s~dg~v~lwd~~~~~~-~~~~~-----~~~~~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~  545 (670)
                      +..+++-. |..|.+|+++.... +..+.     ++....++-+|+|  +|+.+++. .|++++.||+++.++...+ ..
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence            99988876 78999999987655 32222     3445677888987  77888776 5899999999988776554 46


Q ss_pred             CCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCC-CeeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCc
Q 005913          546 HRSMILSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       546 h~~~I~~l~~sp~g~-~l~sg~~dg~I~iwDl~~-~~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      |...|..+.|+|+-+ +|++|++||.|+|||.++ ..++..+.+|...|+++.|+| ..++|.+||.|..|.+|...+-.
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            778899999999755 788999999999999985 468899999999999999999 46789999999999999875533


Q ss_pred             cccccc--------------cccCCcccccccccCCCCCCeEEEEEecCCc-EEEEeeCCCC
Q 005913          623 KVLKTE--------------EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT  669 (670)
Q Consensus       623 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs~dgs  669 (670)
                      .....+              ++...-...++.++..|...|++++||.... ++|+-++||.
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR  354 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR  354 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence            211110              0111222345678899999999999987654 5677788873

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=3.4e-19  Score=173.31  Aligned_cols=284  Identities=17%  Similarity=0.283  Sum_probs=212.3

Q ss_pred             cCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          349 NTHNGLNCASISQ-----DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       349 ~~~~~V~~l~fs~-----d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      +|...|..++|++     +...+|+. ....+.||...........                       ....-..|...
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatv-G~~rvtiy~c~~d~~ir~l-----------------------q~y~D~d~~Es   91 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATV-GGNRVTIYECPGDGGIRLL-----------------------QSYADEDHDES   91 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEe-CCcEEEEEEECCccceeee-----------------------eeccCCCCCcc
Confidence            4556788888874     33455555 4557889987653211110                       00011136677


Q ss_pred             EEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCCcee
Q 005913          424 VYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       424 V~~l~~sp~----~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      .+.++|+-+    +.++|+|+.-|.|+|.|+.++++...+.+|...|..+.+.|+ .+++++||.|.+|++|++++..++
T Consensus        92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv  171 (385)
T KOG1034|consen   92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV  171 (385)
T ss_pred             eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE
Confidence            788888754    347899999999999999999999999999999999999995 578999999999999999999999


Q ss_pred             EEec---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE------E-------------------E---EEecCC
Q 005913          499 RIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------V-------------------R---IFIGHR  547 (670)
Q Consensus       499 ~~~~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~------~-------------------~---~~~~h~  547 (670)
                      .++.   +|...|.++.|+++|.+|++++.|.+|.+|++...+.      .                   .   +-.-|.
T Consensus       172 ~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr  251 (385)
T KOG1034|consen  172 AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR  251 (385)
T ss_pred             EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence            8875   7999999999999999999999999999999973211      0                   0   112466


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEeCC-CCe-------------eeEEeeCCCcceEEEEE--cCCCCEEEEEECCC
Q 005913          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLA-SGR-------------CVTPLMGHTSCVWTLAY--SCEGSLLASGSADC  611 (670)
Q Consensus       548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~-------------~~~~~~~h~~~V~sl~~--s~~g~~l~sgs~Dg  611 (670)
                      ..|.|+.|-  |.++++=+.++.|..|... -++             .+.++.-....|+-+.|  .|-+++||.|...|
T Consensus       252 nyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g  329 (385)
T KOG1034|consen  252 NYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG  329 (385)
T ss_pred             chHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence            677777776  6899999999999999872 111             22333344455666554  56678999999999


Q ss_pred             cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       612 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .|.+||++...+....           ..+-......|...+||.||.+|+..++|++
T Consensus       330 ~v~vwdL~~~ep~~~t-----------tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  330 KVYVWDLDNNEPPKCT-----------TLTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             cEEEEECCCCCCccCc-----------eEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            9999999987643110           1112233456999999999999999999886

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=1.3e-19  Score=176.16  Aligned_cols=241  Identities=27%  Similarity=0.464  Sum_probs=189.0

Q ss_pred             cCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          349 NTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       349 ~~~~~V~~l~fs~d----~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .+.+....++|+-|    ..+||+|+.-|.|+|.|+..                            ......+.+|.+.|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------------------------~~~~~~~~ghG~sI  138 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------------------------GQCSKNYRGHGGSI  138 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------------------------hhhccceeccCccc
Confidence            35566777888754    45899999999999999875                            33556688999999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc----
Q 005913          425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----  496 (670)
Q Consensus       425 ~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~----  496 (670)
                      +.+.|.|+. +++++||.|.+||+|++++..++..+-   +|...|.++.|+++|.+|+++|.|.++.+|++...+    
T Consensus       139 Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  139 NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence            999999976 588999999999999999999988865   699999999999999999999999999999997221    


Q ss_pred             -----------------------eeE-EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCc-------------
Q 005913          497 -----------------------PLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGE-------------  538 (670)
Q Consensus       497 -----------------------~~~-~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~-------------  538 (670)
                                             +.. +-.-|...|.|+.|-  |+++++-+.++.|..|-.. -++             
T Consensus       219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T  296 (385)
T KOG1034|consen  219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT  296 (385)
T ss_pred             hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence                                   000 123477778888884  5899998889999999872 111             


Q ss_pred             EEEEEecCCCCeEEE--EEcCCCCEEEEEECCCeEEEEeCCCCeee--EEeeC--CCcceEEEEEcCCCCEEEEEECCCc
Q 005913          539 CVRIFIGHRSMILSL--AMSPDGRYMASGDEDGTIMMWDLASGRCV--TPLMG--HTSCVWTLAYSCEGSLLASGSADCT  612 (670)
Q Consensus       539 ~~~~~~~h~~~I~~l--~~sp~g~~l~sg~~dg~I~iwDl~~~~~~--~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~  612 (670)
                      .+..+.-....|.-+  +|.|.+++||.|...|.|.+||++...+.  .++..  ....|...+||.||.+|+..+.|++
T Consensus       297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             eeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            122233333444444  55677899999999999999999987653  22222  2357899999999999999999999


Q ss_pred             EEEEeCC
Q 005913          613 VKLWDVT  619 (670)
Q Consensus       613 I~iwd~~  619 (670)
                      |.-||.-
T Consensus       377 Vwrwdrv  383 (385)
T KOG1034|consen  377 VWRWDRV  383 (385)
T ss_pred             EEEEEee
Confidence            9999853

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=4.1e-18  Score=163.18  Aligned_cols=292  Identities=20%  Similarity=0.248  Sum_probs=211.7

Q ss_pred             CCCceeEEEeecCCCCEEEEEEcC--C-CCEEEEEeC----CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCC
Q 005913          338 ALPSVSFYTFINTHNGLNCASISQ--D-GSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR  410 (670)
Q Consensus       338 ~~ps~~~~t~~~~~~~V~~l~fs~--d-~~~La~g~~----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (670)
                      ..+..+.++-.+.+-.+.++.||.  + +-+||.|+.    ...|.|-.+.......                       
T Consensus        31 ~~~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~-----------------------   87 (364)
T KOG0290|consen   31 GNPRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGEL-----------------------   87 (364)
T ss_pred             cCcccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCce-----------------------
Confidence            445555555566777899999993  3 557888863    4556666655311100                       


Q ss_pred             ccceeeeecCccCEEEEEEcCCCC-----EEEEEeCCCeEEEEeCCCCceeE---------EeeCCCccEeEEEEec-CC
Q 005913          411 KRSYTLYQGHSGPVYSASFSPLGD-----FILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNP-QG  475 (670)
Q Consensus       411 ~~~~~~~~~h~~~V~~l~~sp~~~-----~L~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~l~~sp-~g  475 (670)
                        ....-..|.-+++.+.|.|+..     +||+++ | .+|+|.+.......         .-..+..+++++.|+. +-
T Consensus        88 --~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp  163 (364)
T KOG0290|consen   88 --VEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP  163 (364)
T ss_pred             --eccCCCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc
Confidence              1111146889999999999863     455443 4 69999987432211         1123677999999998 77


Q ss_pred             CEEEEEECCCcEEEEECCCCce---eEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEe-cC--CC
Q 005913          476 HYFASSSHDRTARIWSMDRIQP---LRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI-GH--RS  548 (670)
Q Consensus       476 ~~l~s~s~dg~v~lwd~~~~~~---~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h--~~  548 (670)
                      +++.+.+-|-++.|||++++..   ...+-.|...|..++|...+ +.+++.+.||.||+||++....-..+. +.  ..
T Consensus       164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~  243 (364)
T KOG0290|consen  164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST  243 (364)
T ss_pred             ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence            8899999999999999998643   45667899999999999755 578889999999999999765443332 22  45


Q ss_pred             CeEEEEEcC-CCCEEEEEE-CCCeEEEEeCCC-CeeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCccc
Q 005913          549 MILSLAMSP-DGRYMASGD-EDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       549 ~I~~l~~sp-~g~~l~sg~-~dg~I~iwDl~~-~~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      +...++|++ |-+++|+-. ....|.|.|++. ..++.++++|.+.|..++|.|. +..|+++|.|..+-|||+......
T Consensus       244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~  323 (364)
T KOG0290|consen  244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE  323 (364)
T ss_pred             cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence            788899998 456777754 446799999985 5788999999999999999995 568999999999999999875431


Q ss_pred             cccccccCCcccccccccCCCCCCeEEEEEec-CCcEEEEeeC
Q 005913          625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGAL  666 (670)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~-~~~~La~gs~  666 (670)
                               ....++..+. ....|..++|++ .+..++++..
T Consensus       324 ---------~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  324 ---------NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             ---------CCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence                     1112333443 667899999995 5677777654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=7.7e-17  Score=172.69  Aligned_cols=294  Identities=37%  Similarity=0.617  Sum_probs=228.5

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ..+.+|....+......+..|...|.+++|+|++.++++++. ++.+++|++..                          
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  187 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--------------------------  187 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--------------------------
Confidence            356666655544556677888899999999999999998886 99999999874                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeE-EeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~dg~  486 (670)
                        ......+.+|...|.+++|+|++. .+++++.|++|++||...+.... .+.+|...+ ...|+|++.++++++.|+.
T Consensus       188 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~  264 (466)
T COG2319         188 --GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT  264 (466)
T ss_pred             --CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc
Confidence              234455666999999999999998 55566999999999988777777 688888775 4489999989999999999


Q ss_pred             EEEEECCCCce-eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEE
Q 005913          487 ARIWSMDRIQP-LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       487 v~lwd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~  563 (670)
                      +++|++..... ...+.+|...+.++.|+|++..+++++.|+.+.+||..+........  .|...+..+.|.+++..++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
T COG2319         265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV  344 (466)
T ss_pred             EEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence            99999987665 44446788999999999999999989999999999999888776665  7888899999943435566


Q ss_pred             EE-ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEE-EECCCcEEEEeCCCCccccccccccCCcccccccc
Q 005913          564 SG-DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS-GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT  641 (670)
Q Consensus       564 sg-~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  641 (670)
                      .+ ..|+.+.+|++............ ..+..+.+++ ...++. +..++.+.+|+..........              
T Consensus       345 ~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  408 (466)
T COG2319         345 SGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL--------------  408 (466)
T ss_pred             EeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec--------------
Confidence            55 68899999999888733333222 2288999988 544444 688999999999886532111              


Q ss_pred             cCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          642 LPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       642 ~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                       ......+....+++++..++.++.+++
T Consensus       409 -~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (466)
T COG2319         409 -DGHTSRVTSLDFSPDGKSLASGSSDNT  435 (466)
T ss_pred             -cCCCCcEEEEEECCCCcEEEEecCCCc
Confidence             111168899999999998888666543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=5.8e-19  Score=178.47  Aligned_cols=244  Identities=16%  Similarity=0.236  Sum_probs=185.0

Q ss_pred             ceeeeecCccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEec-CCCEEEEEECCC
Q 005913          413 SYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR  485 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg  485 (670)
                      ......-+.+.|++++|+|..+  .+++|..-|+|-+||+.+.    ..+..+..|..+|.++.|+| +-..+++.|.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            3345567899999999999765  7889999999999999633    23567788999999999999 557899999999


Q ss_pred             cEEEEECCCCceeEEecc--cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCCCCeEEEEEcCC-CCE
Q 005913          486 TARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPD-GRY  561 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~-g~~  561 (670)
                      +|++-|+++......+..  ....+..+.|+.+...+++|..=|...+||.+++.. ...+.-|...|.+++++|. ..+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            999999987643333332  344567788887777788887777999999998765 6667778889999999995 457


Q ss_pred             EEEEECCCeEEEEeCCCCe----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC----CCccccccccccCC
Q 005913          562 MASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT----TSTKVLKTEEKSGT  633 (670)
Q Consensus       562 l~sg~~dg~I~iwDl~~~~----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~----~~~~~~~~~~~~~~  633 (670)
                      |+|++.|++.+|||++.-.    ++-....|...|.+..|||.+..|++.+.|+.|+|||..    ...+.....+.   
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn---  414 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN---  414 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc---
Confidence            8999999999999998532    233445799999999999988889999999999999984    11111111000   


Q ss_pred             cccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       634 ~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                             .....-.......|.|+..++++|-.
T Consensus       415 -------~~t~RwlT~fKA~W~P~~~li~vg~~  440 (498)
T KOG4328|consen  415 -------NRTGRWLTPFKAAWDPDYNLIVVGRY  440 (498)
T ss_pred             -------CcccccccchhheeCCCccEEEEecc
Confidence                   00001123456678888888888754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=2.5e-18  Score=164.52  Aligned_cols=254  Identities=20%  Similarity=0.305  Sum_probs=191.7

Q ss_pred             EeecCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913          346 TFINTHNGLNCASISQ-DGSLVAGGFSD-------SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~-d~~~La~g~~d-------g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (670)
                      +|..+.+.|..++-+| |.++|+++..+       -.+.||.+.........                   .....+..+
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------------------~tlE~v~~L  118 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------------------STLECVASL  118 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-------------------chhhHhhcC
Confidence            5677788899999998 45667766542       23679998752221100                   011222233


Q ss_pred             e-cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEe-----eCCCccEeEEEEec--CCCEEEEEECCCcEE
Q 005913          418 Q-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCY-----KGHNYPVWDVQFNP--QGHYFASSSHDRTAR  488 (670)
Q Consensus       418 ~-~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~-~~~-----~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~  488 (670)
                      . .+-+.|.|+.|.|++..+++-. |..|.+|++..+..+ ...     .++....++-+|+|  +|+.+++. .|+++.
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~  196 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ  196 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence            3 4567999999999999988776 788999999877652 222     13566788899999  67777765 579999


Q ss_pred             EEECCCCceeEEec-ccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcC-CCCEEEE
Q 005913          489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSP-DGRYMAS  564 (670)
Q Consensus       489 lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp-~g~~l~s  564 (670)
                      .||+++.+....+. .|...|..+.|+|+-. +|++|+.||.|++||.+. ..++..+.+|...|.++.|+| ..++|++
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence            99999877766554 7888899999999875 577899999999999985 567888999999999999999 4568889


Q ss_pred             EECCCeEEEEeCCCC-----------------------------eeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEE
Q 005913          565 GDEDGTIMMWDLASG-----------------------------RCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVK  614 (670)
Q Consensus       565 g~~dg~I~iwDl~~~-----------------------------~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~  614 (670)
                      |+.|..|.+|-..+-                             ..+.++..|...|++++||.-.. ++|+-+.||.+.
T Consensus       277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence            999999999965321                             12345677999999999987444 678889999998


Q ss_pred             EEeCCC
Q 005913          615 LWDVTT  620 (670)
Q Consensus       615 iwd~~~  620 (670)
                      |=.+..
T Consensus       357 Is~V~r  362 (370)
T KOG1007|consen  357 ISSVPR  362 (370)
T ss_pred             eecCCh
Confidence            876654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=8.4e-18  Score=182.91  Aligned_cols=267  Identities=20%  Similarity=0.266  Sum_probs=203.3

Q ss_pred             ceecCCCCCCceeEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (670)
Q Consensus       331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (670)
                      .+++|+..-|..+.+. +.....|+|++|+| +.++||.|+.+|.|.+||+.......                      
T Consensus       223 ~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------------------  279 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------------------  279 (555)
T ss_pred             eEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------------
Confidence            5778888878655554 44577899999999 57888999999999999998643211                      


Q ss_pred             CccceeeeecCccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeE------Eee------CCCccEeEEEEec-C
Q 005913          410 RKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLV------CYK------GHNYPVWDVQFNP-Q  474 (670)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~~~------~~~------~h~~~V~~l~~sp-~  474 (670)
                      ..........|..+|+.+.|..+-.  -++++|.||.|..|+++.-....      ...      .....++++.|.+ +
T Consensus       280 ~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~  359 (555)
T KOG1587|consen  280 PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD  359 (555)
T ss_pred             CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence            0122334457999999999976544  49999999999999877433210      011      1234688999998 5


Q ss_pred             CCEEEEEECCCcEEEEECCCC--------ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEEEEec
Q 005913          475 GHYFASSSHDRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIG  545 (670)
Q Consensus       475 g~~l~s~s~dg~v~lwd~~~~--------~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~  545 (670)
                      ...|++|+.+|.|.--+-...        +....+..|.+.|.++.++|=+..++..+.|.+|+||... ...++..+..
T Consensus       360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~  439 (555)
T KOG1587|consen  360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS  439 (555)
T ss_pred             CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh
Confidence            667999999999887443322        2233556788999999999988777666669999999988 6677777777


Q ss_pred             CCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCC--eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          546 HRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       546 h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~--~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      +...+++++|||.. ..++++..||.|.+||+...  .++.....+....+.+.|++.|+.|++|...|++.+|++..
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            88889999999964 57788888999999999754  45555555566677888999999999999999999999964

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.9e-17  Score=152.16  Aligned_cols=241  Identities=19%  Similarity=0.240  Sum_probs=182.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      .|.+-++||.+++|++|..+|.|.++.+........                  .......+...++|.++|+.++|.  
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------~~~gk~~iv~eqahdgpiy~~~f~--   71 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------EPPGKLKIVPEQAHDGPIYYLAFH--   71 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------CCCCCcceeeccccCCCeeeeeee--
Confidence            356668999999999999999999999875211100                  011123445568999999999998  


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcee--------EEeeCC-----CccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANL--------VCYKGH-----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~--------~~~~~h-----~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      ..+|++|+ ||.|+-|..+.....        ....-|     -..|.++...|...-+++++.|+.++-||+++++..+
T Consensus        72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r  150 (325)
T KOG0649|consen   72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR  150 (325)
T ss_pred             hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence            56777776 599999987643220        001112     2357888899877777788899999999999999999


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC---------C-CCeEEEEEcCCCCEEEEEECCC
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH---------R-SMILSLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h---------~-~~I~~l~~sp~g~~l~sg~~dg  569 (670)
                      .+.+|...|.|+.-......+++|+.||++|+||.++++++..+...         . ..|.+++.+  ..+|++|+. .
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p  227 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-P  227 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-C
Confidence            99999999999998666668999999999999999999999877532         2 246666655  558877764 5


Q ss_pred             eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      .+.+|.+++.++...+. -...|..+.|..  ..+++++..+.|.-|.+..
T Consensus       228 ~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  228 KLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             ceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccceeeeeecc
Confidence            79999999988776664 345677788853  4677888888899998765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=1.2e-17  Score=166.07  Aligned_cols=209  Identities=24%  Similarity=0.388  Sum_probs=169.7

Q ss_pred             ceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEecC-CCEEEEEEC
Q 005913          413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSH  483 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~  483 (670)
                      .+-...||+++|..++|+|.++ .||+||.|.+|.||.+..+       +.+..+.+|...|-.++|+|. .+.|++++.
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            3345679999999999999654 6889999999999998643       457788999999999999994 567899999


Q ss_pred             CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEE
Q 005913          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYM  562 (670)
Q Consensus       484 dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l  562 (670)
                      |.+|.+|++.+++.+..+. |...|.++.|+.+|.+|++++.|+.|||||.++++.+..-.+|.+. -..+.|-.+|..+
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            9999999999999888877 9999999999999999999999999999999999999888788763 4556677888855


Q ss_pred             EEEE---CCCeEEEEeCCCCee---eEEeeCCCcceEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCcc
Q 005913          563 ASGD---EDGTIMMWDLASGRC---VTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTK  623 (670)
Q Consensus       563 ~sg~---~dg~I~iwDl~~~~~---~~~~~~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~~~~~~  623 (670)
                      .||.   .+..+-+||...-..   +..+. .++.|.---|.+|..+++.+ -.|+.||-|.+....+
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            5553   567899999765432   23332 23445555678887776554 5899999999987653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=1.7e-18  Score=163.81  Aligned_cols=249  Identities=17%  Similarity=0.281  Sum_probs=184.1

Q ss_pred             CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-
Q 005913          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-  418 (670)
Q Consensus       340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  418 (670)
                      |.-++|.+-+|.+.|+|+.|..+++ |.+|..-|.|.+|++++....                            ..+. 
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~----------------------------~~~r~   53 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL----------------------------PLIRL   53 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccc----------------------------hhhhh
Confidence            4445677789999999999988776 888999999999999863321                            1222 


Q ss_pred             cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE---------------------------e------------
Q 005913          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC---------------------------Y------------  459 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~---------------------------~------------  459 (670)
                      .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-...+..                           +            
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence            34556666666665 4566666777777776653111000                           0            


Q ss_pred             --------------eCCCccEeEEEEec-CCC--EEEEEECCCcEEEEECCCC----------ceeEEecccCCCeeEEE
Q 005913          460 --------------KGHNYPVWDVQFNP-QGH--YFASSSHDRTARIWSMDRI----------QPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       460 --------------~~h~~~V~~l~~sp-~g~--~l~s~s~dg~v~lwd~~~~----------~~~~~~~~~~~~v~~v~  512 (670)
                                    .+..+.+.+..|.- .+.  .+++|-.+|.+.+||+..+          +.+.....|..+|.++.
T Consensus       133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld  212 (323)
T KOG0322|consen  133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD  212 (323)
T ss_pred             cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence                          01123455555432 333  3566778999999999986          33344457889999999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCC--CcE-EEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSS--GEC-VRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH  588 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~--~~~-~~~-~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h  588 (670)
                      |.+..+.=++|+.+..+.+|++..  +.+ ++. ..-....|..+.+-||++.+||++.|++|+||..++.+++..+..|
T Consensus       213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH  292 (323)
T KOG0322|consen  213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH  292 (323)
T ss_pred             echhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence            998777778888888999998863  322 111 1222345888999999999999999999999999999999999999


Q ss_pred             CcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          589 TSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       589 ~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      .+.|.+++|+|+..++|+++.|++|.+|++
T Consensus       293 sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=4.8e-18  Score=174.37  Aligned_cols=204  Identities=19%  Similarity=0.300  Sum_probs=167.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~  512 (670)
                      .+.++.++.||.+.+.+-. ++.-.....|.+.|.+-.|+|+|.-+++++.||.|++|+-.. -...++.....+|.|++
T Consensus        75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEE
Confidence            3568888999999988744 556667788999999999999999999999999999998543 23333445667899999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcce
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV  592 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V  592 (670)
                      |.|+++.++.+. .+.+.|=.+.....+-.+..|.+-|.++.|+|....+++|++|-..++|| ..|..+..-..|..+|
T Consensus       153 W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  153 WAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD-AQGANLFTSAAEEYAI  230 (737)
T ss_pred             ECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeec-ccCcccccCChhccce
Confidence            999998777663 56788888877777778899999999999999999999999999999999 4677888888899999


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ++++|+|+ ..++.++.+ ++|   +.+                       ...+.|+.++||+||.-+++|+..|
T Consensus       231 TSva~npd-~~~~v~S~n-t~R---~~~-----------------------p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYN-TAR---FSS-----------------------PRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             eeeeeccc-cceeeeeee-eee---ecC-----------------------CCccceEEEEEcCCCceeeccccCc
Confidence            99999999 566655543 444   111                       3456799999999999999998876

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.78  E-value=7.7e-18  Score=176.43  Aligned_cols=259  Identities=18%  Similarity=0.316  Sum_probs=203.0

Q ss_pred             HcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       327 ~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      ...+++.+.+.+-.+. +.++.+|.+.|.|++||.||+++|+|+.|..|.||+-.-.+                      
T Consensus        30 AAg~rlliyD~ndG~l-lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG----------------------   86 (1081)
T KOG1538|consen   30 AAGSRLLVYDTSDGTL-LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG----------------------   86 (1081)
T ss_pred             ecCCEEEEEeCCCccc-ccccccccceEEEEEEccCCceeccCCCceeEEEecccccc----------------------
Confidence            4456777776554443 55889999999999999999999999999999999854211                      


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~  486 (670)
                              ..-..|...|.|+.|+|-...|++|+-. ..-+|+..... +..++ ....|.+++|..||+||+.|-.+|+
T Consensus        87 --------~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGT  155 (1081)
T KOG1538|consen   87 --------ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGT  155 (1081)
T ss_pred             --------eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCce
Confidence                    1223599999999999999999999864 47889877433 22222 2456889999999999999999999


Q ss_pred             EEEEECCCCceeEEe--cccCCCeeEEEEcCCC-----CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC
Q 005913          487 ARIWSMDRIQPLRIM--AGHLSDVDCVRWHINC-----NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (670)
Q Consensus       487 v~lwd~~~~~~~~~~--~~~~~~v~~v~~~p~~-----~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g  559 (670)
                      |.+-+-.....+++-  .|..++|.+++|+|+.     ..+++.....++.++.+. |+.+..-..-.-...|+.+-|+|
T Consensus       156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNG  234 (1081)
T ss_pred             EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCC
Confidence            999865433333322  2567889999999865     467777788888888764 44443322333345689999999


Q ss_pred             CEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          560 RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       560 ~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .++..|+.|+.+.+|- +.|-.+.++-.....|++++..|+++.++.|+.||+|-.|++-..
T Consensus       235 Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  235 EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            9999999999999997 678888888778889999999999999999999999999998654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7e-17  Score=175.68  Aligned_cols=289  Identities=18%  Similarity=0.254  Sum_probs=216.0

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      .|.-.++|.++||+++++|+|..||.|.+|.-...                        .......+.+.-|...|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------------------------~~~~~t~t~lHWH~~~V~~L~  258 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------------------------SDDSETCTLLHWHHDEVNSLS  258 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEecccc------------------------ccccccceEEEecccccceeE
Confidence            34445899999999999999999999999974320                        112346678889999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc-----
Q 005913          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-----  503 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~-----  503 (670)
                      |+++|.+|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|..|.+....+......+.+     
T Consensus       259 fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~  337 (792)
T KOG1963|consen  259 FSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT  337 (792)
T ss_pred             EecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence            99999999999999999999999988 444555688999999999999999999999999998755444333332     


Q ss_pred             ------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec-----------CCCCeEEEEEcCCCCEEEEEE
Q 005913          504 ------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-----------HRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       504 ------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-----------h~~~I~~l~~sp~g~~l~sg~  566 (670)
                            ..+-.+.++++|..+.++-.+..|.|.+||+.+...+..+..           +...+++++.+..|.+++|+-
T Consensus       338 ~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  338 PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             ccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence                  233456788899888888888999999999998877655531           223578888888999999964


Q ss_pred             --------CC--CeEEEEeCCCCe----eeEE-eeCCCcceEEEEEcC-C-CCEEEEEECCCcEEEEeCCCCcccccccc
Q 005913          567 --------ED--GTIMMWDLASGR----CVTP-LMGHTSCVWTLAYSC-E-GSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (670)
Q Consensus       567 --------~d--g~I~iwDl~~~~----~~~~-~~~h~~~V~sl~~s~-~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  629 (670)
                              .|  -.+++|-.....    .... ...|...+...++.+ . ....++++.||.++||-+.......+.. 
T Consensus       418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~-  496 (792)
T KOG1963|consen  418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS-  496 (792)
T ss_pred             eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc-
Confidence                    22  357889765332    2222 246876666555543 3 3389999999999999997655443221 


Q ss_pred             ccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          630 KSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                          ..+.+...-.-|..++.+++|+.||.+|++|..+
T Consensus       497 ----s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~  530 (792)
T KOG1963|consen  497 ----SNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD  530 (792)
T ss_pred             ----cceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence                1122222222378899999999999999887665

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.2e-18  Score=167.52  Aligned_cols=229  Identities=22%  Similarity=0.375  Sum_probs=174.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC--CCCEEEEEeC
Q 005913          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSA  441 (670)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~L~s~s~  441 (670)
                      +.+|++.+.|.|++||..+                            ...+..+++|...+..+.|..  ....+.+|+.
T Consensus        41 ~~vav~lSngsv~lyd~~t----------------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss   92 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT----------------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSS   92 (376)
T ss_pred             eeEEEEecCCeEEEEeccc----------------------------hhhhheecCCCCcccceEEecCCCCCeeEEecc
Confidence            6799999999999999875                            345667888999999999987  3567899999


Q ss_pred             CCeEEEEeCCCCceeE--EeeCCC-ccEeEEEEecCCCEEEEEE----CCCcEEEEECCCCce-eEEe-cccCCCeeEEE
Q 005913          442 DTTIRLWSTKLNANLV--CYKGHN-YPVWDVQFNPQGHYFASSS----HDRTARIWSMDRIQP-LRIM-AGHLSDVDCVR  512 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~--~~~~h~-~~V~~l~~sp~g~~l~s~s----~dg~v~lwd~~~~~~-~~~~-~~~~~~v~~v~  512 (670)
                      ||+|++||+++.....  .+..+. .+..+++....++.+++|.    .+-.|.+||++..+. ++.+ ..|..+|+++.
T Consensus        93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr  172 (376)
T KOG1188|consen   93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR  172 (376)
T ss_pred             CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence            9999999999876543  344454 4667777776788888885    567899999987665 5443 57999999999


Q ss_pred             EcCC-CCEEEEEEcCCcEEEEECCCCcE---EEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCeee-----
Q 005913          513 WHIN-CNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRCV-----  582 (670)
Q Consensus       513 ~~p~-~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~~~~-----  582 (670)
                      |||+ .+.|++|+.||-|.+||+.....   +.....|...|.++.|..++ +.|.+-+..+...+|++..+.+.     
T Consensus       173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~  252 (376)
T KOG1188|consen  173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN  252 (376)
T ss_pred             ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence            9985 57999999999999999975422   22233566778999998876 34777777888888887543221     


Q ss_pred             --------------------------------------------------------EEeeC-CCcceEEEEEcCCCCEEE
Q 005913          583 --------------------------------------------------------TPLMG-HTSCVWTLAYSCEGSLLA  605 (670)
Q Consensus       583 --------------------------------------------------------~~~~~-h~~~V~sl~~s~~g~~l~  605 (670)
                                                                              ..+.+ |..-|.++.|...+.++.
T Consensus       253 ~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~  332 (376)
T KOG1188|consen  253 PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLY  332 (376)
T ss_pred             ccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceee
Confidence                                                                    11122 334466677777788999


Q ss_pred             EEECCCcEEEEeCCC
Q 005913          606 SGSADCTVKLWDVTT  620 (670)
Q Consensus       606 sgs~Dg~I~iwd~~~  620 (670)
                      |||.||.+.+|....
T Consensus       333 TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  333 TGGEDGLLQAWKVED  347 (376)
T ss_pred             ccCCCceEEEEecCC
Confidence            999999999999644

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=2.3e-17  Score=164.89  Aligned_cols=265  Identities=20%  Similarity=0.265  Sum_probs=191.8

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+..|+..|+++.|+|+|.+||+|+.+|.|.+|........      ...     . ............+.+.+|...|+
T Consensus        60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~------~~d-----~-e~~~~ke~w~v~k~lr~h~~diy  127 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF------DAD-----T-EADLNKEKWVVKKVLRGHRDDIY  127 (434)
T ss_pred             cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc------ccc-----c-hhhhCccceEEEEEecccccchh
Confidence            35567889999999999999999999999999987631000      000     0 00001112345667889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec---
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA---  502 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~---  502 (670)
                      .++|+|++.++++++.|.++++||+..+........|..-+..++|.|.++++++-+.|+..+.+++...+.+....   
T Consensus       128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~  207 (434)
T KOG1009|consen  128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI  207 (434)
T ss_pred             hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE
Confidence            99999999999999999999999999999999999999999999999999999999999977777765332221111   


Q ss_pred             -----c-----------cC----CCeeEEEEcCCCCEEEEEEc----CC-----cEEEEECCC-CcEEEEEecCCCCeEE
Q 005913          503 -----G-----------HL----SDVDCVRWHINCNYIATGSS----DK-----TVRLWDVSS-GECVRIFIGHRSMILS  552 (670)
Q Consensus       503 -----~-----------~~----~~v~~v~~~p~~~~l~tgs~----dg-----~I~iwd~~~-~~~~~~~~~h~~~I~~  552 (670)
                           +           |.    .-...++|+|+|..+++...    ++     +.++++-.. .++...+.+...+...
T Consensus       208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~la  287 (434)
T KOG1009|consen  208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALA  287 (434)
T ss_pred             eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEE
Confidence                 0           11    12356789999999998542    22     234444321 2333344444455556


Q ss_pred             EEEcC------------------CCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECCCcE
Q 005913          553 LAMSP------------------DGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTV  613 (670)
Q Consensus       553 l~~sp------------------~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I  613 (670)
                      +.|+|                  .+-.+|.++ ...|++||..+-.++.... -|-..|+.++|+++|..|+..|.||..
T Consensus       288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC  366 (434)
T KOG1009|consen  288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC  366 (434)
T ss_pred             EEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence            66655                  122344444 5679999999888776654 477899999999999999999999988


Q ss_pred             EEEeCCCCcc
Q 005913          614 KLWDVTTSTK  623 (670)
Q Consensus       614 ~iwd~~~~~~  623 (670)
                      .+--+...+.
T Consensus       367 S~vtfe~~el  376 (434)
T KOG1009|consen  367 SLVTFEPWEL  376 (434)
T ss_pred             EEEEEcchhc
Confidence            8777666543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.7e-17  Score=162.85  Aligned_cols=299  Identities=15%  Similarity=0.231  Sum_probs=217.8

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcccee-eeecCccCE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT-LYQGHSGPV  424 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V  424 (670)
                      .+.+|.+.|+++.||.++++||+|+.|-.+++|++.......+                      .+.+. .-..|...|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------~KPI~~~~~~H~SNI  108 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------PKPIGVMEHPHRSNI  108 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------------------CCCceeccCccccce
Confidence            4577889999999999999999999999999999874211110                      01111 123466899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc-eeE--
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLR--  499 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~-~~~--  499 (670)
                      .|++|...+++|.+|..+++|.+.|+.+.+.+.++..  ..+.|..+..+|..+.|++.+.++.|.+||.+... ++.  
T Consensus       109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~  188 (609)
T KOG4227|consen  109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV  188 (609)
T ss_pred             EEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee
Confidence            9999999999999999999999999999888777653  23589999999999999999999999999997644 332  


Q ss_pred             EecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcE-EEE---EecC---CCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          500 IMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGEC-VRI---FIGH---RSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~-~~~---~~~h---~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                      ...........+.|+|.. .+|++.+..+-+-+||++.... +..   +.+-   ...-.++.|+|+|..|.+--....-
T Consensus       189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P  268 (609)
T KOG4227|consen  189 LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP  268 (609)
T ss_pred             eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence            223345567888999865 5777888889999999985432 211   1111   1223678899999999887666667


Q ss_pred             EEEeCCCCeeeEEeeCCC-------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccc--------ccCCccc
Q 005913          572 MMWDLASGRCVTPLMGHT-------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE--------KSGTNRL  636 (670)
Q Consensus       572 ~iwDl~~~~~~~~~~~h~-------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--------~~~~~~~  636 (670)
                      .+||+-+.++..--..|.       ..+.+++|.-|- -+++|+.+-.|++|.+...........        .+.....
T Consensus       269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~  347 (609)
T KOG4227|consen  269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE  347 (609)
T ss_pred             EEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence            788887765543222332       246778887554 499999999999999976543322111        0111112


Q ss_pred             ccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          637 RSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       637 ~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      ..+..+.+|.+-+..|.|+|.+.+|++.+..
T Consensus       348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE  378 (609)
T KOG4227|consen  348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGVE  378 (609)
T ss_pred             ceeEEEecccccccceeecCCcceEeccchh
Confidence            3455688999999999999999999887654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=4.5e-17  Score=178.83  Aligned_cols=283  Identities=20%  Similarity=0.280  Sum_probs=202.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      +.-..+.|+|-...++++.....|+|||.........                         +..-......|+.+.+-.
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~-------------------------F~n~~~~~t~Vs~l~liN 1119 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNG-------------------------FDNGAFPDTRVSDLELIN 1119 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceecc-------------------------ccCCCCCCCccceeeeec
Confidence            3466788999999999998888999999875322110                         000012346788888865


Q ss_pred             C--CCEEEEEeCCCeEEEEeCCC-----CceeEEeeC-------CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913          432 L--GDFILSSSADTTIRLWSTKL-----NANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       432 ~--~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~~-------h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      .  ..++++|+.||.|+||+--.     .+.+..+.+       ..+.-.-+.|.....+++++|.-+.|+|||.+....
T Consensus      1120 e~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1120 EQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV 1199 (1387)
T ss_pred             ccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee
Confidence            3  34789999999999997321     122222221       111123467888666777777789999999998777


Q ss_pred             eEEec-ccCCCeeEEEEc-CCCCEEEEEEcCCcEEEEECCCCc---EEEEEecCCCC--eEEEEEcCCCCE-EEEEECCC
Q 005913          498 LRIMA-GHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRSM--ILSLAMSPDGRY-MASGDEDG  569 (670)
Q Consensus       498 ~~~~~-~~~~~v~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~--I~~l~~sp~g~~-l~sg~~dg  569 (670)
                      +..+. +....|+++.-+ +.|+.+++|..||.||+||.+...   .+...+.|...  |..+.+.+.|-- |++|+.||
T Consensus      1200 ~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1200 VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred             EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence            66654 444556766554 457999999999999999998643   46777888887  999999997764 99999999


Q ss_pred             eEEEEeCCCCeee--EEeeCCC--c-ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          570 TIMMWDLASGRCV--TPLMGHT--S-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       570 ~I~iwDl~~~~~~--~~~~~h~--~-~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                      .|++||++.....  ..+..|.  + .++++..+++..++|+|+. +.|+||++..........         .-..+..
T Consensus      1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~---------n~~F~~q 1349 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKY---------NPGFMGQ 1349 (1387)
T ss_pred             eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccccc---------CcccccC
Confidence            9999999975222  2223343  3 5899999999999999999 999999987643221110         0112233


Q ss_pred             CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          645 KSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       645 ~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ..+++.|++|+|.-.+||+|+.|.+
T Consensus      1350 ~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred             cCCCcceeeecchhHhhhhccCCce
Confidence            4567899999999999999988764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=6e-17  Score=176.29  Aligned_cols=238  Identities=17%  Similarity=0.235  Sum_probs=182.5

Q ss_pred             CccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce--eE----EeeCCCccEeEEEEecCCC--EEEEEECCCcEEEE
Q 005913          420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNAN--LV----CYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIW  490 (670)
Q Consensus       420 h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~--~~----~~~~h~~~V~~l~~sp~g~--~l~s~s~dg~v~lw  490 (670)
                      -...|.|+.|+|.. .+++.|+.+|+|.+||++.+..  ..    ....|..+++.+.|..+..  -|++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            45789999999965 5677888999999999987655  22    2335899999999987544  49999999999999


Q ss_pred             ECCCCce-eE-----Eec------ccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC---CC-----cEEEEEecCCCC
Q 005913          491 SMDRIQP-LR-----IMA------GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS---SG-----ECVRIFIGHRSM  549 (670)
Q Consensus       491 d~~~~~~-~~-----~~~------~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~---~~-----~~~~~~~~h~~~  549 (670)
                      +++.... ..     ...      .....+++++|.+ +-+.+++|+.+|.|.--+..   .+     +.+..+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            9875332 11     111      1224588999987 45678899999998874332   22     223456678899


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEeCC-CCeeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          550 ILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      |+++.++|-+..++..+.|.+++||... ...++..+..+...|++++|||- ...++++..||.|.|||+.....    
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~----  476 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE----  476 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc----
Confidence            9999999987766666669999999988 77788888888888999999995 45788888999999999977542    


Q ss_pred             ccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCCC
Q 005913          628 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS  670 (670)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs~  670 (670)
                               .++.+.+......+.+.|+++|++|++|...|++
T Consensus       477 ---------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~  510 (555)
T KOG1587|consen  477 ---------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTT  510 (555)
T ss_pred             ---------CCcccccccccccceeecCCCCcEEEEecCCCcE
Confidence                     2344444456678888999999999999999863

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=1.1e-17  Score=162.52  Aligned_cols=232  Identities=23%  Similarity=0.354  Sum_probs=182.3

Q ss_pred             CCEEEEEEc-------CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc---
Q 005913          352 NGLNCASIS-------QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS---  421 (670)
Q Consensus       352 ~~V~~l~fs-------~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---  421 (670)
                      ..|...+|-       |+.+++|+.+.+.-|++||.-+.+..+...                          -..|.   
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~--------------------------~ydh~de~  158 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------------------------AYDHQDEY  158 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchh--------------------------hhhhHHhh
Confidence            345555553       788999999999999999987644332211                          11222   


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeEEe-------eCCCccEeEEEEecC-CCEEEEEECCCcEEEEEC
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWST-KLNANLVCY-------KGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSM  492 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~-~~~~~~~~~-------~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~  492 (670)
                      ....+++|+|||..|++|- ..+|+++|+ +.+.....+       .+..+-|.+++|+|. ...+++|+...++-||.-
T Consensus       159 taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~  237 (406)
T KOG2919|consen  159 TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND  237 (406)
T ss_pred             hhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence            2345899999999999875 568999999 444332221       123667899999994 458999999999999999


Q ss_pred             CCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCC-CcEEEEEecCCC-CeEE--EEEcCCCCEEEEEEC
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS-GECVRIFIGHRS-MILS--LAMSPDGRYMASGDE  567 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~-~~~~~~~~~h~~-~I~~--l~~sp~g~~l~sg~~  567 (670)
                      ....++..+-+|.+.|+.+.|+++|+.|++|.. |..|..||++. +.++..+..|.+ .-..  ....|+|++|++|+.
T Consensus       238 ~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t  317 (406)
T KOG2919|consen  238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT  317 (406)
T ss_pred             CCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence            999999999999999999999999999999885 67899999985 455555666654 2333  445789999999999


Q ss_pred             CCeEEEEeCCC-CeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913          568 DGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (670)
Q Consensus       568 dg~I~iwDl~~-~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D  610 (670)
                      ||.|++||+.. |..+..+..|+..|..++++|--.++++++..
T Consensus       318 dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  318 DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            99999999998 77788888899999999999998888888765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=7.6e-19  Score=188.33  Aligned_cols=264  Identities=24%  Similarity=0.409  Sum_probs=206.0

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +.+|.+.|.|+.|...|.++++|+.|..|+||...+                            ......+.||++.|+.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et----------------------------~~~lAs~rGhs~ditd  237 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET----------------------------ARCLASCRGHSGDITD  237 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccc----------------------------hhhhccCCCCccccch
Confidence            467888999999999999999999999999999765                            3355667899999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe----c
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM----A  502 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~----~  502 (670)
                      ++.+.+..+++++|.|..|++|.+..+..+..+.+|++.|++++|+|..    +.+.||++++||.+ ..+....    .
T Consensus       238 lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~  312 (1113)
T KOG0644|consen  238 LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLK  312 (1113)
T ss_pred             hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCC
Confidence            9999999999999999999999999999999999999999999999965    67889999999987 1111111    1


Q ss_pred             -ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCe
Q 005913          503 -GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       503 -~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                       ....-+.++.|..++.-++||+.|+.-+.|.+..-.      .+...+.-+.++.+ ..+.+++-.+-.+++|++.+|.
T Consensus       313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~  386 (1113)
T KOG0644|consen  313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ  386 (1113)
T ss_pred             cccccceeeeeccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch
Confidence             122456778888889999999999998888764211      11111111112211 2466777788899999999999


Q ss_pred             eeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913          581 CVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  659 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~  659 (670)
                      .++.+.+|...++.+.++| +..+..+++.||...|||+..+.++....               .....+...+||++|.
T Consensus       387 l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~---------------~gh~kl~d~kFSqdgt  451 (1113)
T KOG0644|consen  387 LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF---------------IGHGKLVDGKFSQDGT  451 (1113)
T ss_pred             hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee---------------cccceeeccccCCCCc
Confidence            9999999999999999999 45567789999999999998876543221               2244566677777776


Q ss_pred             EEEEe
Q 005913          660 LFAAG  664 (670)
Q Consensus       660 ~La~g  664 (670)
                      .++..
T Consensus       452 s~~ls  456 (1113)
T KOG0644|consen  452 SIALS  456 (1113)
T ss_pred             eEecC
Confidence            65543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=5.1e-16  Score=153.78  Aligned_cols=236  Identities=18%  Similarity=0.281  Sum_probs=182.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..+..+.|+.|...|.+|+.||+ ++|+......                            ..........|.-+-|+ 
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k----------------------------~~~~~~~~~~IvEmLFS-   55 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK----------------------------CFSKDTEGVSIVEMLFS-   55 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHH----------------------------hhcccCCCeEEEEeecc-
Confidence            34677779999999999999985 6777654211                            00011122345555666 


Q ss_pred             CCCEEEEEeCC--CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc---cCC
Q 005913          432 LGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---HLS  506 (670)
Q Consensus       432 ~~~~L~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~---~~~  506 (670)
                       ..++|..+.+  +.+++++++....+..+. ...+|.++.++.  +.++++-.+ .|+|||+++.+.+..+..   +..
T Consensus        56 -SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~  130 (391)
T KOG2110|consen   56 -SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPK  130 (391)
T ss_pred             -cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCcc
Confidence             5566655544  348899988777776655 455788888864  456666554 499999999998887753   444


Q ss_pred             CeeEEEEcCCCCEEEEEE--cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe-EEEEeCCCCeeeE
Q 005913          507 DVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASGRCVT  583 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~-I~iwDl~~~~~~~  583 (670)
                      .+.++++++.+.|++.-+  ..|.|.+||+.+-+.+..+..|.+++.|++|+++|.+|||+++.|+ ||||++.+|+.+.
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~  210 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY  210 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence            566666666677998743  4689999999999999999999999999999999999999999997 7899999999999


Q ss_pred             EeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          584 PLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       584 ~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      +++...  ..|++++|+|++++|++.|..++|+||.+....
T Consensus       211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            998544  568999999999999999999999999997654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=1.7e-15  Score=160.04  Aligned_cols=264  Identities=14%  Similarity=0.229  Sum_probs=173.8

Q ss_pred             cceecCCCCC-CceeEEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          330 NRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       330 ~~~~l~~~~~-ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~-~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      +.+.+|.... ............+....++++|++++|++++ .++.|.+|++...+..                     
T Consensus        12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l---------------------   70 (330)
T PRK11028         12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL---------------------   70 (330)
T ss_pred             CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---------------------
Confidence            3445544321 2223333444556788999999999987764 5788999998631110                     


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecCCCEEEEEE
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSS  482 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s  482 (670)
                          ..... ....+....++|+|++++|++++. ++.|.+|++.+..    .+..+. +.....+++++|+|+++++++
T Consensus        71 ----~~~~~-~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~  144 (330)
T PRK11028         71 ----TFAAE-SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPC  144 (330)
T ss_pred             ----EEeee-ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEee
Confidence                00010 112234568999999998887764 8899999997432    222222 223466788999999886655


Q ss_pred             -CCCcEEEEECCCCceeEE-----e-cccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCC--Cc--EEEEEecC----
Q 005913          483 -HDRTARIWSMDRIQPLRI-----M-AGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--GE--CVRIFIGH----  546 (670)
Q Consensus       483 -~dg~v~lwd~~~~~~~~~-----~-~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~--~~--~~~~~~~h----  546 (670)
                       .++.|.+||+++...+..     . .........++|+|+++++++++. +++|.+||+..  ++  .+..+..+    
T Consensus       145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~  224 (330)
T PRK11028        145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF  224 (330)
T ss_pred             CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence             569999999976332210     1 112345678999999999988876 89999999973  32  23333221    


Q ss_pred             --CCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCeeeEEeeCC---CcceEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 005913          547 --RSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGH---TSCVWTLAYSCEGSLLASGSA-DCTVKLWDVT  619 (670)
Q Consensus       547 --~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~~~~~~h---~~~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~  619 (670)
                        ......+.++|+|++++++. .++.|.+|++........+.++   ......+.|+|+|++|+++.. +++|.+|++.
T Consensus       225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence              11234688999999999885 4789999998654321122222   124567899999999998775 8999999986


Q ss_pred             C
Q 005913          620 T  620 (670)
Q Consensus       620 ~  620 (670)
                      .
T Consensus       305 ~  305 (330)
T PRK11028        305 G  305 (330)
T ss_pred             C
Confidence            4

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=8.2e-17  Score=156.51  Aligned_cols=232  Identities=21%  Similarity=0.304  Sum_probs=185.8

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC-CCC
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM-DRI  495 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~-~~~  495 (670)
                      -..+|+|.+|++|+..++++.....|.||......   ...+++.|...|++|+|+|..+.|++|+.|+..++|.. ..+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            45799999999999999999999999999987554   56788899999999999999999999999999999998 333


Q ss_pred             --ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE----EEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913          496 --QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       496 --~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~----~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg  569 (670)
                        ++.-.+..+...++||.|+|+++.|++|+.-+.|.+|-....+-    ..+-..+...|+++.|+|++-+|++|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence              45556667889999999999999999999999999998765432    123345678899999999999999999999


Q ss_pred             eEEEEeCC------------------CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccccc
Q 005913          570 TIMMWDLA------------------SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS  631 (670)
Q Consensus       570 ~I~iwDl~------------------~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~  631 (670)
                      ..++|..-                  -|..+.++....+.|..+.|+|+|..|+-.+.|+++.+=|......        
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--------  240 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--------  240 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--------
Confidence            99999741                  1234444445568899999999999999999999999998776532        


Q ss_pred             CCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          632 GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       632 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                            .+.+.....-|..++.|-..+..+++|-
T Consensus       241 ------~v~~~~~~~lP~ls~~~ise~~vv~ag~  268 (361)
T KOG1523|consen  241 ------RVQSVATAQLPLLSVSWISENSVVAAGY  268 (361)
T ss_pred             ------hccchhhccCCceeeEeecCCceeecCC
Confidence                  1222223335677777776666555443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=8.3e-17  Score=156.48  Aligned_cols=230  Identities=18%  Similarity=0.244  Sum_probs=182.1

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .++-...+|+|.+|++|++.+|++.....|.||......                         ......++..|...|+
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------~w~~~htls~Hd~~vt   59 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------LWEPAHTLSEHDKIVT   59 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------CceeceehhhhCccee
Confidence            444456789999999999999999999999999976421                         1345677889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee----
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----  498 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~----  498 (670)
                      ++.|+|..+.|++|+.|..-++|....   .+....+..++..++++.|+|.++.||+||..+.|.+|-++...--    
T Consensus        60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK  139 (361)
T KOG1523|consen   60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK  139 (361)
T ss_pred             EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence            999999999999999999999999833   2345556678999999999999999999999999999988753321    


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-----C-------------CcEEEEEecCCCCeEEEEEcCCCC
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----S-------------GECVRIFIGHRSMILSLAMSPDGR  560 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-----~-------------~~~~~~~~~h~~~I~~l~~sp~g~  560 (670)
                      .+-..+.+.|.+++|||++-.+++|+.|+.+|++..-     .             |+.+..+....+.+..+.|+|+|.
T Consensus       140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~  219 (361)
T KOG1523|consen  140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN  219 (361)
T ss_pred             hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence            1233567889999999999999999999999998642     1             122333435567899999999999


Q ss_pred             EEEEEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcCC
Q 005913          561 YMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCE  600 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~~  600 (670)
                      .|+-.+.|+.+.+-|..... .+.......-+..++.|-.+
T Consensus       220 ~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  220 RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE  260 (361)
T ss_pred             EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence            99999999999999987654 23333323356667777543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=9.4e-17  Score=175.31  Aligned_cols=220  Identities=19%  Similarity=0.233  Sum_probs=156.7

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCcee--EEeeCCCccEeEEEEecCCCEEEEEE-CCCcEE
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR  488 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~  488 (670)
                      ..+..|...+.+.+|+|+|+.|+.++.+   ..|++||+.++...  ..+.+|   ...++|+|+|+.|+.++ .+|.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            3455678889999999999999887653   47999999877543  223333   34689999999988765 678665


Q ss_pred             EE--ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          489 IW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       489 lw--d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      ||  |+.++. ...+..+...+.+..|+|+|+.|+.++ .+|...||++.. +.....+ .+.+  .+..|+|+|++|+.
T Consensus       274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~  349 (429)
T PRK01742        274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVM  349 (429)
T ss_pred             EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEE
Confidence            55  665554 445566767788999999999877655 567888887643 2223333 3443  46789999999998


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                      ++.++ +.+||+.++........+  ...++.|+|+|++|+.++.+|.+.+|++.....             ..+..+..
T Consensus       350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-------------~~~~~l~~  413 (429)
T PRK01742        350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-------------RFKARLPG  413 (429)
T ss_pred             EcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-------------CceEEccC
Confidence            87765 566999988654322222  335688999999999999999999888643110             12345556


Q ss_pred             CCCCeEEEEEecC
Q 005913          645 KSTPVYSLQFSRR  657 (670)
Q Consensus       645 ~~~~V~~l~fs~~  657 (670)
                      +...+...+|+|.
T Consensus       414 ~~g~~~~p~wsp~  426 (429)
T PRK01742        414 SDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCCcccCCC
Confidence            6677888899985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=1.9e-16  Score=157.64  Aligned_cols=212  Identities=17%  Similarity=0.279  Sum_probs=170.6

Q ss_pred             eecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +.+|.+.|..++|+| +...+|+|+.|.+|.||.+........                     .......+.||...|-
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---------------------ltepvv~L~gH~rrVg  135 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---------------------LTEPVVELYGHQRRVG  135 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---------------------cccceEEEeecceeEE
Confidence            568899999999998 577899999999999999875332211                     1246778999999999


Q ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       426 ~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      -++|+|.. +.|++++.|.+|.+|++.+++.+..+. |...|+++.|+.+|.+|++++.|+.|||||.++++.+..-.+|
T Consensus       136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence            99999976 478899999999999999999998888 9999999999999999999999999999999999999887777


Q ss_pred             CCC-eeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcEE---EEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeC
Q 005913          505 LSD-VDCVRWHINCNYIATGS---SDKTVRLWDVSSGECV---RIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL  576 (670)
Q Consensus       505 ~~~-v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~~---~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl  576 (670)
                      .+. -..+.|-.+|..+-||.   +++.+-+||..+-...   ..+. ....|.---|.|+.+.++.+ -.|+.|+-|.+
T Consensus       215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             cCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence            653 45566778888555554   4778999997654332   2232 33456666678888877654 57999999998


Q ss_pred             CCCee
Q 005913          577 ASGRC  581 (670)
Q Consensus       577 ~~~~~  581 (670)
                      ....+
T Consensus       294 t~d~P  298 (472)
T KOG0303|consen  294 TNEPP  298 (472)
T ss_pred             cCCCc
Confidence            76553

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=8.9e-17  Score=157.51  Aligned_cols=191  Identities=21%  Similarity=0.338  Sum_probs=155.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEEECCCCcee--EEecccC-CCe
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL--RIMAGHL-SDV  508 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~--~~~~~~~-~~v  508 (670)
                      ..+|++...|+|++||..+++.+..++++...+..+.|..  ..+.+.+|+.||+|++||++.....  ..+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888899999999999999999999999999999987  5678999999999999999875443  3344454 467


Q ss_pred             eEEEEcCCCCEEEEEE----cCCcEEEEECCCCcE-EEEE-ecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCe-
Q 005913          509 DCVRWHINCNYIATGS----SDKTVRLWDVSSGEC-VRIF-IGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGR-  580 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~~-~~~~-~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~-  580 (670)
                      .|++.+-+++.+++|+    .+-.|.+||+|..+. ++.+ ..|...|+++.|+| +.+.|++|+.||.|.+||+.... 
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7888777888999886    467899999998776 5544 57999999999999 56799999999999999997542 


Q ss_pred             --eeEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccc
Q 005913          581 --CVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       581 --~~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                        .+...-.|.+.|.++.|..++ ..|.+-+..++..+|+++.+...
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence              222233577789999998776 45888889999999999877643

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=3e-16  Score=150.49  Aligned_cols=245  Identities=18%  Similarity=0.285  Sum_probs=179.8

Q ss_pred             ecCCCCEEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          348 INTHNGLNCASISQDG-----SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~-----~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      +.|.-+++.+-|.|+.     .+||+.  +-.+|+|.+...........            .       -....-..+.+
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~------------~-------L~~~kns~~~a  151 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQS------------V-------LNNNKNSEFCA  151 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhh------------h-------hccCcccccCC
Confidence            5777889999999986     355554  45899999874211110000            0       00011234678


Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCce
Q 005913          423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       423 ~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      ++++..|+. +-++|.++|-|.++.|||++++..   ...+-.|...|.+++|...+ ..||++|.||.||++|++....
T Consensus       152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            999999987 446888999999999999998633   55677899999999999854 5699999999999999987665


Q ss_pred             eEEeccc---CCCeeEEEEcC-CCCEEEEEEcC-CcEEEEECCC-CcEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCe
Q 005913          498 LRIMAGH---LSDVDCVRWHI-NCNYIATGSSD-KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGT  570 (670)
Q Consensus       498 ~~~~~~~---~~~v~~v~~~p-~~~~l~tgs~d-g~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~  570 (670)
                      ..++...   ..+...++|++ +-+++|+-..| ..|.|.|++. ..++..+.+|.+.|..|+|.|. +..|+++|+|..
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q  311 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ  311 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence            5444322   35677889986 45788875554 5799999985 5678889999999999999995 568999999999


Q ss_pred             EEEEeCCCCee------eEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEE
Q 005913          571 IMMWDLASGRC------VTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKL  615 (670)
Q Consensus       571 I~iwDl~~~~~------~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~i  615 (670)
                      +.+||+.+.-.      +..+. -.+.|..+.|++ .+.+++.+... ++.|
T Consensus       312 aliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k-klei  361 (364)
T KOG0290|consen  312 ALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK-KLEI  361 (364)
T ss_pred             EEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence            99999975321      22222 457899999996 56677777643 4443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.72  E-value=1.6e-17  Score=168.30  Aligned_cols=271  Identities=19%  Similarity=0.229  Sum_probs=216.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      +-..+.++.+|++|+.|+..|.|..+|+.+.....                             ...-...|.++.|..+
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-----------------------------Ei~v~Etv~Dv~~LHn  181 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-----------------------------EINVMETVRDVTFLHN  181 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeee-----------------------------eeehhhhhhhhhhhcc
Confidence            44567889999999999999999999988633221                             1122357888999988


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~  512 (670)
                      ..++|++- ...++|||-. +..+.+++.|. .|..+.|.|..-.|++++..|.++.-|+.+|+.+..+....+.+..++
T Consensus       182 eq~~AVAQ-K~y~yvYD~~-GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~  258 (545)
T KOG1272|consen  182 EQFFAVAQ-KKYVYVYDNN-GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK  258 (545)
T ss_pred             hHHHHhhh-hceEEEecCC-CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh
Confidence            88888875 5689999966 77888888665 688999999998999999999999999999999999888888999999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcce
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV  592 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V  592 (670)
                      -+|-...+-+|...|+|.+|......++..+..|.++|.+|++.++|+|++|.|.|..++|||+++-..+.++.. ..+.
T Consensus       259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a  337 (545)
T KOG1272|consen  259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA  337 (545)
T ss_pred             cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence            999989999999999999999999998888889999999999999999999999999999999998877766654 4566


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ..+++|..| +||.+ ....|.||.=......       ..   ...+-......+|..+.|.|-..+|.+|-..|
T Consensus       338 ~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~-------~~---~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  338 SNLSLSQKG-LLALS-YGDHVQIWKDALKGSG-------HG---ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             ccccccccc-ceeee-cCCeeeeehhhhcCCC-------CC---CcchhhhccCcccccceeccHHHeeeccccCC
Confidence            788888665 34444 4447999963322110       00   11111122234899999999999998887655

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=8.8e-15  Score=154.56  Aligned_cols=260  Identities=15%  Similarity=0.216  Sum_probs=171.4

Q ss_pred             EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe-CCCeE
Q 005913          367 AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTTI  445 (670)
Q Consensus       367 a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s-~Dg~I  445 (670)
                      ++...++.|.+|++...+.                         ......+. +.+....++++|++++|++++ .++.|
T Consensus         6 ~~~~~~~~I~~~~~~~~g~-------------------------l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i   59 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGA-------------------------LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRV   59 (330)
T ss_pred             EEcCCCCCEEEEEECCCCc-------------------------eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcE
Confidence            3446789999999853111                         11222222 335567889999999887664 57889


Q ss_pred             EEEeCCC-Cce--eEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCC-C---ceeEEecccCCCeeEEEEcCCC
Q 005913          446 RLWSTKL-NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDR-I---QPLRIMAGHLSDVDCVRWHINC  517 (670)
Q Consensus       446 ~lwd~~~-~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~-~---~~~~~~~~~~~~v~~v~~~p~~  517 (670)
                      .+|++.. +..  ..... .......++|+|+++++++++ .++.|.+|+++. +   ..+..+. +.....+++++|++
T Consensus        60 ~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g  137 (330)
T PRK11028         60 LSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN  137 (330)
T ss_pred             EEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence            9999973 322  12222 233456899999999988876 478999999964 2   2223332 23456778999999


Q ss_pred             CEEEEEE-cCCcEEEEECCCCcEEEE-----Ee-cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCC--C--eeeEEe
Q 005913          518 NYIATGS-SDKTVRLWDVSSGECVRI-----FI-GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS--G--RCVTPL  585 (670)
Q Consensus       518 ~~l~tgs-~dg~I~iwd~~~~~~~~~-----~~-~h~~~I~~l~~sp~g~~l~sg~~-dg~I~iwDl~~--~--~~~~~~  585 (670)
                      +++++++ .++.|.+||+.+...+..     .. ........++|+|+|++++++.. ++.|.+||+..  +  +.+..+
T Consensus       138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~  217 (330)
T PRK11028        138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL  217 (330)
T ss_pred             CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence            9987655 568999999976432210     11 12234678999999999988876 89999999973  3  233333


Q ss_pred             eCC------CcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          586 MGH------TSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       586 ~~h------~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      ..+      ......+.++|+|++++++. .+++|.+|++.......           ..+...++. .....++|+|+|
T Consensus       218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----------~~~~~~~~~-~~p~~~~~~~dg  285 (330)
T PRK11028        218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----------SFEGHQPTE-TQPRGFNIDHSG  285 (330)
T ss_pred             ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----------EEeEEEecc-ccCCceEECCCC
Confidence            221      11233588999999998885 47899999997643211           112222222 234578999999


Q ss_pred             cEEEEeeC
Q 005913          659 LLFAAGAL  666 (670)
Q Consensus       659 ~~La~gs~  666 (670)
                      ++|+++..
T Consensus       286 ~~l~va~~  293 (330)
T PRK11028        286 KYLIAAGQ  293 (330)
T ss_pred             CEEEEEEc
Confidence            99988775

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=4.7e-16  Score=169.85  Aligned_cols=232  Identities=19%  Similarity=0.185  Sum_probs=163.3

Q ss_pred             ceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      .+++++.....  ...+..+...+.+.+|||||+.||.++.+   ..|.+||+.+...                      
T Consensus       185 ~i~i~d~dg~~--~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~----------------------  240 (429)
T PRK01742        185 EVRVADYDGFN--QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR----------------------  240 (429)
T ss_pred             EEEEECCCCCC--ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce----------------------
Confidence            44454433322  23455667789999999999999987643   4699999864211                      


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCCCEEEEEe-CCCeEEEE--eCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-C
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-H  483 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s-~Dg~I~lw--d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~  483 (670)
                          ..+..+.+|   ..+++|+|||+.|+.++ .+|.+.||  |+.++. ...+..+...+.+..|+|+|..++.++ .
T Consensus       241 ----~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~  312 (429)
T PRK01742        241 ----KVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDR  312 (429)
T ss_pred             ----EEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECC
Confidence                112222333   33679999999888764 67876555  665554 444556677788999999999877665 5


Q ss_pred             CCcEEEEECCCC-ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913          484 DRTARIWSMDRI-QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM  562 (670)
Q Consensus       484 dg~v~lwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l  562 (670)
                      ++...+|+++.. .....+ .+..  .+.+|+|+|++|++++.++ +.+||+.+++.......+  ...++.|+|+|++|
T Consensus       313 ~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i  386 (429)
T PRK01742        313 SGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMI  386 (429)
T ss_pred             CCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEE
Confidence            788888876532 222333 3433  4678999999999887765 666999988765433222  34567899999999


Q ss_pred             EEEECCCeEEEEeC--CCCeeeEEeeCCCcceEEEEEcCC
Q 005913          563 ASGDEDGTIMMWDL--ASGRCVTPLMGHTSCVWTLAYSCE  600 (670)
Q Consensus       563 ~sg~~dg~I~iwDl--~~~~~~~~~~~h~~~V~sl~~s~~  600 (670)
                      +.++.+|.+.+|++  .+|..+..+..|.+.+...+|+|-
T Consensus       387 ~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        387 IYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            99999998888876  368888888888888999999984

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.2e-16  Score=165.80  Aligned_cols=232  Identities=23%  Similarity=0.419  Sum_probs=175.7

Q ss_pred             CCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (670)
Q Consensus       338 ~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (670)
                      ..-..+.|+|.+|.++|.|+++++++..+.+|+.||+|+.|++.....         ..+.         .........+
T Consensus       331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d---------p~ds---------~dp~vl~~~l  392 (577)
T KOG0642|consen  331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD---------PDDS---------YDPSVLSGTL  392 (577)
T ss_pred             ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC---------cccc---------cCcchhccce
Confidence            445677899999999999999999999999999999999999762100         0000         0012344568


Q ss_pred             ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCC-CEEEEEECCCcEEEEECC
Q 005913          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD  493 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~  493 (670)
                      .||.+.|+.+++|+....|++|+.||++++|....... .++.   .|..| .++.+-... ...++...-+.-.+.+++
T Consensus       393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDME  470 (577)
T ss_pred             eccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhh
Confidence            89999999999999999999999999999999876655 3332   23332 344443222 222222233344444555


Q ss_pred             CCceeEEecc-------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          494 RIQPLRIMAG-------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       494 ~~~~~~~~~~-------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ..+.+..+..       ....+.-+.++|+....+++..|+.|+++|..++..+.....|...++++++.|+|.+|++++
T Consensus       471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s  550 (577)
T KOG0642|consen  471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS  550 (577)
T ss_pred             hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence            5555554432       124577889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCC
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHT  589 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~  589 (670)
                      .||.+++|.+....++.....|.
T Consensus       551 ~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  551 HDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             CCceeehhhccchheeecccccc
Confidence            99999999998888877766664

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=1.3e-14  Score=141.45  Aligned_cols=282  Identities=15%  Similarity=0.213  Sum_probs=189.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      ..+++|+.|...+++|..+| .+||+++..+......                          +....-.+.-+-|-  .
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~--------------------------~~~~G~~~veMLfR--~   58 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ--------------------------FIDGGFKIVEMLFR--S   58 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc--------------------------cccCchhhhhHhhh--h
Confidence            45599999999999997766 7999988633211110                          00000112222222  3


Q ss_pred             CEEE-EEeCC------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEecccC
Q 005913          434 DFIL-SSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMAGHL  505 (670)
Q Consensus       434 ~~L~-s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-~~~~~~~~~~~~  505 (670)
                      ++|+ +|+.+      ..|.|||=....++..+. ...+|.++.+.++  .+++. ..+.|++|... +.+.++.+....
T Consensus        59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~  134 (346)
T KOG2111|consen   59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRS  134 (346)
T ss_pred             ceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeeccc
Confidence            4443 33332      469999966566666665 5778999999866  45544 35789999987 666676665333


Q ss_pred             --CCeeEEEEcCCCCEEEE-EEcCCcEEEEECCCCcE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCe-EEEEeCCCC
Q 005913          506 --SDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASG  579 (670)
Q Consensus       506 --~~v~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~-I~iwDl~~~  579 (670)
                        ..+.+++-+.+..+|+. |-.-|.|.|-|+...+.  ...+..|.+.|.|++.+-+|..+||++..|+ |+|||..+|
T Consensus       135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g  214 (346)
T KOG2111|consen  135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG  214 (346)
T ss_pred             CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence              23333333334445555 55679999999986554  4677899999999999999999999999997 899999999


Q ss_pred             eeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccC-C--cc------cccccccCCCCCC
Q 005913          580 RCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG-T--NR------LRSLKTLPTKSTP  648 (670)
Q Consensus       580 ~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~--~~------~~~~~~~~~~~~~  648 (670)
                      ..+.+++..  ...|++++|||++.+|+++|..|+|+|+.+.............. .  ..      ...+..+.-..++
T Consensus       215 ~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~  294 (346)
T KOG2111|consen  215 TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGT  294 (346)
T ss_pred             cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCC
Confidence            999998743  36799999999999999999999999999987543322000000 0  00      0112233334667


Q ss_pred             eEEEEEecC-CcEEEEeeCCCC
Q 005913          649 VYSLQFSRR-NLLFAAGALSKT  669 (670)
Q Consensus       649 V~~l~fs~~-~~~La~gs~dgs  669 (670)
                      ..-++|..+ +.+++.+. ||+
T Consensus       295 ~~~~~fg~~~nsvi~i~~-Dgs  315 (346)
T KOG2111|consen  295 QCIIAFGSETNTVIAICA-DGS  315 (346)
T ss_pred             cEEEEecCCCCeEEEEEe-CCc
Confidence            888899888 55555544 353

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.2e-16  Score=160.90  Aligned_cols=196  Identities=26%  Similarity=0.347  Sum_probs=159.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc-
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-  503 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~-  503 (670)
                      .+++|+++|..|++|+.||++|+|++.....+.....|...|.++.|+|||..+++.+.| ..+||+.+++.++..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            679999999999999999999999988888888888899999999999999999999999 999999999977665542 


Q ss_pred             -cCCCeeEEEEcCCC---CEEEE--EEcCCcEEEEECCCCcE-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913          504 -HLSDVDCVRWHINC---NYIAT--GSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (670)
Q Consensus       504 -~~~~v~~v~~~p~~---~~l~t--gs~dg~I~iwd~~~~~~-----~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~  572 (670)
                       .......+.|+.++   .+.+.  ....+.|+.||+....-     .+........|++++.|++|++++.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             22346678888766   33332  33456777777653221     122222335699999999999999999999999


Q ss_pred             EEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          573 MWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       573 iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      |++..+-+++...+ .|...|+.+.|+|+.+++++.+.|....|..+.-.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            99999888776654 79999999999999999999999999999887663

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.69  E-value=2.7e-16  Score=148.97  Aligned_cols=240  Identities=19%  Similarity=0.276  Sum_probs=183.6

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      ....+.+|.+.|+++.|..+++ |.+|..-|.|++|++.+......++ .|...|+.+.--|+ ..+.+-+.|+.+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            3455679999999999987665 8999999999999999999888888 56788988888887 4688899999999999


Q ss_pred             CCCCceeEE-------------------------------------------------e----cccCCCeeEEEEcC-CC
Q 005913          492 MDRIQPLRI-------------------------------------------------M----AGHLSDVDCVRWHI-NC  517 (670)
Q Consensus       492 ~~~~~~~~~-------------------------------------------------~----~~~~~~v~~v~~~p-~~  517 (670)
                      +.-...+..                                                 .    .+..+.+.|..+.. .+
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence            864211000                                                 0    01123455555432 22


Q ss_pred             C--EEEEEEcCCcEEEEECCCCcE----------EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC--eee-
Q 005913          518 N--YIATGSSDKTVRLWDVSSGEC----------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCV-  582 (670)
Q Consensus       518 ~--~l~tgs~dg~I~iwd~~~~~~----------~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~--~~~-  582 (670)
                      .  ++++|..+|.|.+||+.++..          +.....|..+|.++.+.+.-..=++|+.+..+..|++...  .+. 
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            2  467788999999999998833          3334578899999999986666678888888999988633  221 


Q ss_pred             -EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913          583 -TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  661 (670)
Q Consensus       583 -~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L  661 (670)
                       ..+.--.-.|..+..-||++++||+|.|+.||||+..+..               ++..+..|...|++++|+|+..++
T Consensus       244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---------------pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---------------PLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC---------------chhhhhhhhcceeEEEeCCCCchh
Confidence             1222223457888999999999999999999999998864               466777888999999999999999


Q ss_pred             EEeeCCCC
Q 005913          662 AAGALSKT  669 (670)
Q Consensus       662 a~gs~dgs  669 (670)
                      |+|+.|+.
T Consensus       309 AaaskD~r  316 (323)
T KOG0322|consen  309 AAASKDAR  316 (323)
T ss_pred             hhccCCce
Confidence            99999874

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.2e-15  Score=140.09  Aligned_cols=197  Identities=20%  Similarity=0.355  Sum_probs=153.6

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      ..|.+-+|+|.+++|++|+.+|+|.+..+..          ...+...++|.++|..++|.  ..++++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            4566778999999999999999999998763          22456668999999999998  33566654 59999998


Q ss_pred             CCCCce------e-------EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC
Q 005913          492 MDRIQP------L-------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (670)
Q Consensus       492 ~~~~~~------~-------~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~  558 (670)
                      .+....      +       +.-......|+++-..|..+-+++++.|+.++.||+.+|+..+.+++|++.|.++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            653211      1       110112346899999999998888889999999999999999999999999999998555


Q ss_pred             CCEEEEEECCCeEEEEeCCCCeeeEEeeC---------CC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          559 GRYMASGDEDGTIMMWDLASGRCVTPLMG---------HT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       559 g~~l~sg~~dg~I~iwDl~~~~~~~~~~~---------h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      ...+++|++||++++||+++++++..+..         |. ..|-+++-  +..+|++|+. -.+.+|++.+.+..
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t  240 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSEST  240 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCce
Confidence            66789999999999999999999887743         22 23455554  5567887764 46899999987653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=9.6e-16  Score=157.62  Aligned_cols=210  Identities=16%  Similarity=0.232  Sum_probs=164.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC
Q 005913          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (670)
Q Consensus       363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D  442 (670)
                      ...++.++.||.+.|-+-..                             +.-+....|.+.|.+-.|+|+|.-|+++++|
T Consensus        75 ~d~~~i~s~DGkf~il~k~~-----------------------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GED  125 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSA-----------------------------RVERSISAHAAAISSGRWSPDGAGLLTAGED  125 (737)
T ss_pred             cceEEEEcCCceEEEecccc-----------------------------hhhhhhhhhhhhhhhcccCCCCceeeeecCC
Confidence            45677888999998887442                             2334456799999999999999999999999


Q ss_pred             CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE
Q 005913          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT  522 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t  522 (670)
                      |.|++|+-.. -...++-....+|.|++|.|+...++.+. .+.+.+=.+.....+-..+.|.+-|.|+.|++.++.+++
T Consensus       126 G~iKiWSrsG-MLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s  203 (737)
T KOG1524|consen  126 GVIKIWSRSG-MLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS  203 (737)
T ss_pred             ceEEEEeccc-hHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence            9999999653 22223333567899999999887766553 356777777666666677889999999999999999999


Q ss_pred             EEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913          523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (670)
Q Consensus       523 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~  602 (670)
                      |+.|-..++||.. |..+..-..|..+|++++|+|+ ..++.++. .++++           -....+.|..++||+||.
T Consensus       204 gGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~DGT  269 (737)
T KOG1524|consen  204 GGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSADGT  269 (737)
T ss_pred             cCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCCCc
Confidence            9999999999964 6666666789999999999999 55555543 23331           123457899999999999


Q ss_pred             EEEEEECCCcEEEEe
Q 005913          603 LLASGSADCTVKLWD  617 (670)
Q Consensus       603 ~l~sgs~Dg~I~iwd  617 (670)
                      .+++|+..|.+.+=.
T Consensus       270 Q~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  270 QATCGTSTGQLIVAY  284 (737)
T ss_pred             eeeccccCceEEEee
Confidence            999999999876644

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=8.6e-16  Score=154.88  Aligned_cols=195  Identities=25%  Similarity=0.367  Sum_probs=153.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC
Q 005913          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (670)
Q Consensus       355 ~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (670)
                      .+++|+.+|..||+|+.||++|||++...                            ........|.+.|.++.|+|||+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----------------------------~t~l~e~~~~~eV~DL~FS~dgk  199 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----------------------------LTILEEIAHHAEVKDLDFSPDGK  199 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc----------------------------hhhhhhHhhcCccccceeCCCCc
Confidence            78999999999999999999999997642                            23334567899999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCC---CE--EEEEECCCcEEEEECCCCc-----eeEEec
Q 005913          435 FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQG---HY--FASSSHDRTARIWSMDRIQ-----PLRIMA  502 (670)
Q Consensus       435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g---~~--l~s~s~dg~v~lwd~~~~~-----~~~~~~  502 (670)
                      +|++.+.| ..+||+++++..+....  ..+.....+.|+.++   .+  ++....-+.|+.|++....     +.+...
T Consensus       200 ~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~  278 (398)
T KOG0771|consen  200 FLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI  278 (398)
T ss_pred             EEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence            99999999 89999999986655443  234456678888776   33  3333445667776653221     122222


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      .....|.+++.+++|++++.|+.||.|-|++..+-+++... +.|...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus       279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            33467999999999999999999999999999988877655 47889999999999999999999888888877653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.67  E-value=1.2e-16  Score=162.06  Aligned_cols=221  Identities=19%  Similarity=0.255  Sum_probs=191.9

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      -.-+.+.++.+|++|+.|+.-|.|..+|+.++.....+.. ...|.++.|..+.++||++ ....++|||-. |..+..+
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHCl  206 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCL  206 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeeh
Confidence            3457899999999999999999999999999888777664 5579999999888888776 55789999965 4556666


Q ss_pred             cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      ..| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|...+..+
T Consensus       207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            655 6899999999999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  661 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L  661 (670)
                      +..+..|.++|.++++.++|++++|+|.|..|+|||+.....               +.++.+ ..+...++||..|.+.
T Consensus       286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q---------------l~t~~t-p~~a~~ls~SqkglLA  349 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ---------------LHTYRT-PHPASNLSLSQKGLLA  349 (545)
T ss_pred             HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc---------------cceeec-CCCcccccccccccee
Confidence            999999999999999999999999999999999999988542               233334 5678889999988644


Q ss_pred             E
Q 005913          662 A  662 (670)
Q Consensus       662 a  662 (670)
                      +
T Consensus       350 ~  350 (545)
T KOG1272|consen  350 L  350 (545)
T ss_pred             e
Confidence            3

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=2.1e-14  Score=142.41  Aligned_cols=228  Identities=17%  Similarity=0.253  Sum_probs=173.0

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC--CcEEEEECCCCceeE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLR  499 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--g~v~lwd~~~~~~~~  499 (670)
                      ..+..+.|+.+...|..|+.|| -++|+................|..+-|+  ...+|..+.+  +.++++++.....+.
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence            4566777999999999999998 6888877655433223334455556665  4456666544  459999998877776


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec---CCCCeEEEEEcCCCCEEEEE--ECCCeEEEE
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASG--DEDGTIMMW  574 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~sg--~~dg~I~iw  574 (670)
                      .+. ....|.+|.++.  +.|+++-.+ .|+|||+++.+.+.++..   +...+.++.+++.+.++|--  ...|.|.+|
T Consensus        83 e~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   83 EIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            655 457889998854  456665544 499999999998877654   33446666666667788863  356999999


Q ss_pred             eCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCc-EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT-VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ  653 (670)
Q Consensus       575 Dl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  653 (670)
                      |..+-+.+..+..|.+++-+++|+++|.+|||+|..|+ |||+.+..++...+..             -.+....|++++
T Consensus       159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR-------------RG~~~~~IySL~  225 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR-------------RGTYPVSIYSLS  225 (391)
T ss_pred             EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee-------------CCceeeEEEEEE
Confidence            99999999999999999999999999999999999997 7899999887654332             112355799999


Q ss_pred             EecCCcEEEEeeCCCC
Q 005913          654 FSRRNLLFAAGALSKT  669 (670)
Q Consensus       654 fs~~~~~La~gs~dgs  669 (670)
                      |+|++++|++.+..+|
T Consensus       226 Fs~ds~~L~~sS~TeT  241 (391)
T KOG2110|consen  226 FSPDSQFLAASSNTET  241 (391)
T ss_pred             ECCCCCeEEEecCCCe
Confidence            9999999999998776

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=3e-14  Score=159.36  Aligned_cols=260  Identities=18%  Similarity=0.241  Sum_probs=184.5

Q ss_pred             eEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          343 SFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      ..-.++.|...|..++.++. +.++++|+.||+|++|++......                     .+..+...++....
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------------------~~s~rS~ltys~~~ 1098 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------------------GGSARSELTYSPEG 1098 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------cceeeeeEEEeccC
Confidence            34566778888888888765 599999999999999998752211                     01122333444467


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ee-----EEeeCC-Ccc-EeEEEEec-CC-CEEEEEECCCcEEEE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NL-----VCYKGH-NYP-VWDVQFNP-QG-HYFASSSHDRTARIW  490 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~-----~~~~~h-~~~-V~~l~~sp-~g-~~l~s~s~dg~v~lw  490 (670)
                      +.+.++.+.+.++.+|.++.||.|++.+++...  ..     .....+ .+. |..-+|.. .+ ..++.+..-+.+..|
T Consensus      1099 sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1099 SRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred             CceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence            889999999999999999999999999988621  11     111112 122 33333333 23 367888888999999


Q ss_pred             ECCCCceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCC---CCEEEE
Q 005913          491 SMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPD---GRYMAS  564 (670)
Q Consensus       491 d~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~---g~~l~s  564 (670)
                      |++.......++  ...+.|++++.+|.++++++|+..|.+.+||+|=+.++..+. ++..+|+.+..+|-   ....++
T Consensus      1179 D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred             cchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEE
Confidence            998766554443  334789999999999999999999999999999888877664 45578888887773   245554


Q ss_pred             EE--CCCeEEEEeCCCCeeeEEeeCC-------------------CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          565 GD--EDGTIMMWDLASGRCVTPLMGH-------------------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       565 g~--~dg~I~iwDl~~~~~~~~~~~h-------------------~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      ++  ..+.|.+|++.+|.+...+...                   .-....+.+...+..+.+|+.|+.|+.||......
T Consensus      1259 ~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             ecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            44  5788999999998766555322                   11122334444556899999999999999876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.66  E-value=6.4e-15  Score=152.01  Aligned_cols=193  Identities=21%  Similarity=0.345  Sum_probs=153.6

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC----CCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC---------
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI---------  495 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~---------  495 (670)
                      .|.+--|+.|-..|.|.+.|....+..+.+..    ....|+++.|-| +...|+++-.+|.+++||....         
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            34556688888889999988765332221211    246799999999 4556777778999999976410         


Q ss_pred             -------------------ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEc
Q 005913          496 -------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS  556 (670)
Q Consensus       496 -------------------~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s  556 (670)
                                         .|+..+.-..+.|+..+|+|||++||+.+.||.+||+|..+.+.+..++..-+...|++||
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                               1222222234578889999999999999999999999999998888888888899999999


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcC-----------------------------------CC
Q 005913          557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-----------------------------------EG  601 (670)
Q Consensus       557 p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~-----------------------------------~g  601 (670)
                      |||+||++|++|.-|.||.+...+.+..-++|.+.|..++|.|                                   ++
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~  421 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEG  421 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCC
Confidence            9999999999999999999999999999999999999999983                                   01


Q ss_pred             -------------CEEEEEECCCcEEEEeCCCCc
Q 005913          602 -------------SLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       602 -------------~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                                   -.+.+.+.|-.+++||+....
T Consensus       422 ~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  422 CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             CcccccccccceEEEeecccccceEEEEecchhh
Confidence                         157788899999999997643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.65  E-value=3.8e-15  Score=155.73  Aligned_cols=240  Identities=20%  Similarity=0.264  Sum_probs=172.6

Q ss_pred             EcCCCCEEEE--EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC-CCCE
Q 005913          359 ISQDGSLVAG--GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDF  435 (670)
Q Consensus       359 fs~d~~~La~--g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~  435 (670)
                      |+-+..++|+  .+..|.|-||+++..+...-                    +.  .-..  .....|+.+.|.| |...
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD--------------------gv--~p~l--~Ngt~vtDl~WdPFD~~r  642 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD--------------------GV--MPGL--FNGTLVTDLHWDPFDDER  642 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCc--------------------cc--cccc--ccCceeeecccCCCChHH
Confidence            3444556664  45789999999986432210                    00  0001  1336799999999 5568


Q ss_pred             EEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913          436 ILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (670)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~  507 (670)
                      |++++.||.|++|.+..+       ..-..+..|...|+++.|+| -...+++++.|-+|++||+.+++....+.+|.+.
T Consensus       643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq  722 (1012)
T KOG1445|consen  643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ  722 (1012)
T ss_pred             eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence            999999999999998754       34567888999999999999 4568999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCC-CCeEEEEEcCCCCEEEEEECC----CeEEEEeCCCC--
Q 005913          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHR-SMILSLAMSPDGRYMASGDED----GTIMMWDLASG--  579 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~-~~I~~l~~sp~g~~l~sg~~d----g~I~iwDl~~~--  579 (670)
                      |..++|+|+|+.+++.+.||+|++|..+++.. ++.-.+.. ..--.|.|.-+|+++++.+.|    ..|.+||..+-  
T Consensus       723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~  802 (1012)
T KOG1445|consen  723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL  802 (1012)
T ss_pred             eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC
Confidence            99999999999999999999999999987643 32222111 223457788899999887765    46888887542  


Q ss_pred             eeeEEeeCCCc-ceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCc
Q 005913          580 RCVTPLMGHTS-CVWTLAYSCEGS-LLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       580 ~~~~~~~~h~~-~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      .++.+..-... .+.--.+.+|.+ ++++|-.|..|.+|.+-...
T Consensus       803 ~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  803 RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             CcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence            23332211110 011112344544 67788899999999986644

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=9.5e-14  Score=151.42  Aligned_cols=220  Identities=17%  Similarity=0.151  Sum_probs=153.8

Q ss_pred             eecCccCEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCC--cEEEE
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSS---ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TARIW  490 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg--~v~lw  490 (670)
                      +..+...+.+.+|||||+.|+..+   .+..|++|++.+++.... ......+....|+|||+.++.. +.+|  .|++|
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~  272 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  272 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence            345667899999999999988654   345799999987754332 2223334568999999988765 4444  58899


Q ss_pred             ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       491 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      |+++++..+.. .+...+....|+|+|+.|+.++.+ +  .|+++|+.++...+ +..+.....+..|+|||++|+..+.
T Consensus       273 d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        273 DLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             ECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEc
Confidence            99887665443 344567889999999999877754 3  45566777665543 3444455678899999999987654


Q ss_pred             C---CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCc---EEEEeCCCCccccccccccCCcccccccc
Q 005913          568 D---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTTSTKVLKTEEKSGTNRLRSLKT  641 (670)
Q Consensus       568 d---g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~---I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  641 (670)
                      +   ..|.+||+.++... .+... ....+..|+|||++|+.++.++.   +.+|++....                ...
T Consensus       351 ~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~----------------~~~  412 (429)
T PRK03629        351 NGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF----------------KAR  412 (429)
T ss_pred             cCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC----------------eEE
Confidence            3   45889999887643 33321 22356789999999999998865   6677765432                234


Q ss_pred             cCCCCCCeEEEEEecC
Q 005913          642 LPTKSTPVYSLQFSRR  657 (670)
Q Consensus       642 ~~~~~~~V~~l~fs~~  657 (670)
                      ++.+...+...+|+|-
T Consensus       413 l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        413 LPATDGQVKFPAWSPY  428 (429)
T ss_pred             CccCCCCcCCcccCCC
Confidence            4456667888888873

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=8.8e-15  Score=161.14  Aligned_cols=250  Identities=17%  Similarity=0.247  Sum_probs=178.4

Q ss_pred             CCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCC--ccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          352 NGLNCASIS--QDGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       352 ~~V~~l~fs--~d~~~La~g~~dg~I~Iwdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      ..|+.+.+-  .|..++.+|+.||.||||+--...  .........+                  ......+-.+.=.-+
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~------------------Ls~~~~~~r~~~~v~ 1171 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS------------------LSDQLPGARGTGLVV 1171 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc------------------ccccCccCCCCCeee
Confidence            458888875  367889999999999999843211  0000000000                  000011111111346


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCc---eeEEec
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ---PLRIMA  502 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~---~~~~~~  502 (670)
                      .|.....+|++++.-..|+|||......+..+.. ....|+++.-+- .|+.+++|..||.|++||.+...   .+....
T Consensus      1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred             ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence            7887777888777788999999997776665543 344566665443 57999999999999999987543   466777


Q ss_pred             ccCCC--eeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEE--EEecCC--C-CeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913          503 GHLSD--VDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHR--S-MILSLAMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       503 ~~~~~--v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~--~~~~h~--~-~I~~l~~sp~g~~l~sg~~dg~I~iw  574 (670)
                      .|...  |..+.+.++|-- |++|+.+|.|++||++......  ....|.  + ..+++..+++...+|+|+. +.|.||
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence            88877  999999887754 9999999999999999742222  222232  3 5999999999999999998 999999


Q ss_pred             eCCCCeeeEEeeC-------CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          575 DLASGRCVTPLMG-------HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       575 Dl~~~~~~~~~~~-------h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      ++. |+.+..++.       ..+.+.+++|+|..-++|+|+.|.+|.||.....
T Consensus      1331 ~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1331 SLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            975 444433332       2367899999999999999999999999998764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=6.4e-14  Score=152.88  Aligned_cols=276  Identities=18%  Similarity=0.267  Sum_probs=207.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC-
Q 005913          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-  434 (670)
Q Consensus       356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-  434 (670)
                      ...||+|+++++.. .+..|.||...+                            +...+.+.+|..+++++.+.|... 
T Consensus        21 ~avfSnD~k~l~~~-~~~~V~VyS~~T----------------------------g~~i~~l~~~~a~l~s~~~~~~~~~   71 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLC-TGNFVKVYSTAT----------------------------GECITSLEDHTAPLTSVIVLPSSEN   71 (792)
T ss_pred             ccccccCCcEEEEe-eCCEEEEEecch----------------------------HhhhhhcccccCccceeeecCCCcc
Confidence            45689999998877 567899999876                            335557888999999999988654 


Q ss_pred             --EEEEEeCCCeEEEEeCCCCceeEEe-----------------------------------------------------
Q 005913          435 --FILSSSADTTIRLWSTKLNANLVCY-----------------------------------------------------  459 (670)
Q Consensus       435 --~L~s~s~Dg~I~lwd~~~~~~~~~~-----------------------------------------------------  459 (670)
                        ++.+++.||+|++||...+..+.++                                                     
T Consensus        72 ~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~  151 (792)
T KOG1963|consen   72 ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS  151 (792)
T ss_pred             ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence              6779999999999986432211110                                                     


Q ss_pred             --------------------------------------------------eCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913          460 --------------------------------------------------KGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (670)
Q Consensus       460 --------------------------------------------------~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l  489 (670)
                                                                        ..|...+++.+++|+++++|+|..||.|.+
T Consensus       152 ~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v  231 (792)
T KOG1963|consen  152 AKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV  231 (792)
T ss_pred             cchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence                                                              013345678999999999999999999999


Q ss_pred             EECCC----CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          490 WSMDR----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       490 wd~~~----~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      |.--.    ....+.+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++ ...+..-.++|..+.+|||+.+.+..
T Consensus       232 w~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~  310 (792)
T KOG1963|consen  232 WRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV  310 (792)
T ss_pred             EeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE
Confidence            96322    22345667788999999999999999999999999999999998 33344456889999999999999999


Q ss_pred             ECCCeEEEEeCCCCeeeEEeeC-----------CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCc
Q 005913          566 DEDGTIMMWDLASGRCVTPLMG-----------HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTN  634 (670)
Q Consensus       566 ~~dg~I~iwDl~~~~~~~~~~~-----------h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~  634 (670)
                      ..|..|.+..+.+......+.+           ..+-.+.++++|..+.++-.+..|.|.+||+-+...+.+........
T Consensus       311 ~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~  390 (792)
T KOG1963|consen  311 LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY  390 (792)
T ss_pred             ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence            9999999998765544333322           13446778899987889999999999999998877665443210000


Q ss_pred             ccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          635 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       635 ~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                          ..-.....-+|++++++..|.+++++-
T Consensus       391 ----~~~~~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  391 ----SDGDVNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             ----cCCcceeEEeeeeehhhccceEEEEee
Confidence                000002334678888888899998864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=5.8e-14  Score=138.71  Aligned_cols=238  Identities=19%  Similarity=0.292  Sum_probs=169.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      .+.-++|++.-..+|++..|-.|+||+-.. ..                           ....-......|+|++|-|.
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~---------------------------pt~Lks~sQrnvtclawRPl  151 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TC---------------------------PTKLKSVSQRNVTCLAWRPL  151 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CC---------------------------CceecchhhcceeEEEeccC
Confidence            477889999877889999999999999653 11                           01111123467999999996


Q ss_pred             C-CEEEEEeCCCeEEEEeCCCCc--------------eeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCc
Q 005913          433 G-DFILSSSADTTIRLWSTKLNA--------------NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQ  496 (670)
Q Consensus       433 ~-~~L~s~s~Dg~I~lwd~~~~~--------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~  496 (670)
                      + ..|+.|+..| |.+|......              .+....+| .+|++++|.+||..+++++ .|..|.|||.+++.
T Consensus       152 saselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~  229 (445)
T KOG2139|consen  152 SASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ  229 (445)
T ss_pred             Ccceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence            5 4677887765 9999865221              12334455 6899999999999999998 45789999999988


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                      .+.......+.+.-+.|+|++.+|++++-|+..++|... +..+.+-.. ..+.|...+|+|+|++|+.+.. |.-++|.
T Consensus       230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lys  307 (445)
T KOG2139|consen  230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYS  307 (445)
T ss_pred             cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence            877765566889999999999999999999999999554 444444333 3458999999999997765442 3334444


Q ss_pred             CCCC------------e---eeEEe------eC---CCcceEEEEEcCCCCEEEEEECCC--------cEEEEeCCCCc
Q 005913          576 LASG------------R---CVTPL------MG---HTSCVWTLAYSCEGSLLASGSADC--------TVKLWDVTTST  622 (670)
Q Consensus       576 l~~~------------~---~~~~~------~~---h~~~V~sl~~s~~g~~l~sgs~Dg--------~I~iwd~~~~~  622 (670)
                      +...            +   .+..+      .+   ..+.+.+++|.|.|.+||+.-..+        .|.+||.....
T Consensus       308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence            3210            0   11111      11   246788999999999999876443        36667765543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.8e-15  Score=154.62  Aligned_cols=214  Identities=22%  Similarity=0.348  Sum_probs=166.2

Q ss_pred             eeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-eCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913          414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (670)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw  490 (670)
                      -..+.||++-|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.++.|-|  +...+++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3457899999999999999999999999999999999877776655 57999999999999  56789999999999999


Q ss_pred             ECCC----------CceeEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEE----------EEEecCCCC
Q 005913          491 SMDR----------IQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECV----------RIFIGHRSM  549 (670)
Q Consensus       491 d~~~----------~~~~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~----------~~~~~h~~~  549 (670)
                      |++.          ..+.+.+..|...|..++-.|++ +.+.+++.||+|+-+|++.....          ..+...--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            9984          33556677899999999999998 89999999999999999863211          111122235


Q ss_pred             eEEEEEcCC-CCEEEEEECCCeEEEEeCCC--------Ce----------eeEEee-CCC-----------cceEEEEEc
Q 005913          550 ILSLAMSPD-GRYMASGDEDGTIMMWDLAS--------GR----------CVTPLM-GHT-----------SCVWTLAYS  598 (670)
Q Consensus       550 I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~--------~~----------~~~~~~-~h~-----------~~V~sl~~s  598 (670)
                      ..|+.++|. ..+|++|+.|-..++||.+.        +.          ++..+. +|.           ..++-++|+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            678999995 56899999999999999431        11          122221 221           125668899


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          599 CEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       599 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      |+|.-|...-....|+++|+..++.....
T Consensus       283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  283 PNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            99986666655668999999887665433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=4.9e-14  Score=139.21  Aligned_cols=241  Identities=16%  Similarity=0.196  Sum_probs=169.1

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC----
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI----  495 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~----  495 (670)
                      ..+..++|++.-..++++..|-+|++|+-.. ++...++. ....|++++|-|. +.-|++|+. +-|.+|..+..    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence            4577899998777788999999999999876 44444443 4567999999995 456777776 56999986531    


Q ss_pred             ce----------eEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          496 QP----------LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       496 ~~----------~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      .+          +..-.+| ..|++++|.+||..+++++ .|..|+|||..++..+....-..+.++-+.|||||.+|++
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            11          1222345 6899999999999999977 4678999999999888766455577999999999999999


Q ss_pred             EECCCeEEEEeCC-CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccc---
Q 005913          565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLK---  640 (670)
Q Consensus       565 g~~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~---  640 (670)
                      ++-|+..++|... +.....-.. ..+.|...+|+|+|++|.-+.. |.-++|.+.............+.....++.   
T Consensus       256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence            9999999999544 444433333 3458999999999987665543 334566665443322221111111111111   


Q ss_pred             --ccCCC----CCCeEEEEEecCCcEEEEeeCC
Q 005913          641 --TLPTK----STPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       641 --~~~~~----~~~V~~l~fs~~~~~La~gs~d  667 (670)
                        +..+.    .+++.+++|.|.|.+||+.-..
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence              11122    5689999999999999986543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.63  E-value=2.6e-14  Score=140.22  Aligned_cols=293  Identities=21%  Similarity=0.326  Sum_probs=197.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC---------
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH---------  420 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------  420 (670)
                      ..+-|.|+.|..+|.+||+|..+|.|.+|.-.....                       +.......++.|         
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-----------------------~ey~~~t~fqshepEFDYLkS   80 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-----------------------GEYNFQTEFQSHEPEFDYLKS   80 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccc-----------------------cceeeeeeeeccCcccchhhh
Confidence            345699999999999999999999999997553211                       001112222222         


Q ss_pred             ---ccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce-----------------------------------eEEe-
Q 005913          421 ---SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN-----------------------------------LVCY-  459 (670)
Q Consensus       421 ---~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~-----------------------------------~~~~-  459 (670)
                         ...|..+.|.++++  .++..+.|.+|++|.+.....                                   .+.+ 
T Consensus        81 leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~a  160 (433)
T KOG1354|consen   81 LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYA  160 (433)
T ss_pred             hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecc
Confidence               34688899998775  566777899999998652210                                   0111 


Q ss_pred             eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE---eccc-----CCCeeEEEEcCC-CCEEEEEEcCCcEE
Q 005913          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI---MAGH-----LSDVDCVRWHIN-CNYIATGSSDKTVR  530 (670)
Q Consensus       460 ~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~---~~~~-----~~~v~~v~~~p~-~~~l~tgs~dg~I~  530 (670)
                      ..|...|.++.++.|+..++++ .|=.|.+|.++-......   ++.+     ...|++..|||. ++.++-.++.|+|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            2588999999999999988887 457899999864322211   2222     245788999985 67888899999999


Q ss_pred             EEECCCCcEE----EEE------------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-CCeeeEEeeCCC----
Q 005913          531 LWDVSSGECV----RIF------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHT----  589 (670)
Q Consensus       531 iwd~~~~~~~----~~~------------~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h~----  589 (670)
                      +.|++.....    ..|            ..--..|..+.|+++|+++++-+. -+|++||+. ..+++.++.-|.    
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence            9999853221    111            122246889999999999998754 689999994 556777776553    


Q ss_pred             --------cce---EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc---c----CCccccccccc---------
Q 005913          590 --------SCV---WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK---S----GTNRLRSLKTL---------  642 (670)
Q Consensus       590 --------~~V---~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~---~----~~~~~~~~~~~---------  642 (670)
                              ..|   ..++|+.++.+++||+..+.++++++..+.........   .    ....+..+..-         
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~  398 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEIS  398 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccc
Confidence                    223   35899999999999999999999997665432211110   0    00001111100         


Q ss_pred             ---CCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          643 ---PTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       643 ---~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                         -.....|...+|+|....+|++...
T Consensus       399 vd~ldf~kkilh~aWhp~en~ia~aatn  426 (433)
T KOG1354|consen  399 VDALDFRKKILHTAWHPKENSIAVAATN  426 (433)
T ss_pred             cchhhhhhHHHhhccCCccceeeeeecC
Confidence               0123347788999999998888754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=9e-14  Score=151.60  Aligned_cols=219  Identities=15%  Similarity=0.112  Sum_probs=152.9

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          347 FINTHNGLNCASISQDGSLVAGGF---SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~---~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      +..+...+.+.+|||||+.||..+   .+..|.+|++.+...                          ..+..+   .+.
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------------------------~~l~~~---~~~  244 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------------------RQVASF---PRH  244 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEccCC---CCC
Confidence            344566799999999999998654   245688888764211                          111112   233


Q ss_pred             EEEEEEcCCCCEEEEE-eCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-C--cEEEEECCCCce
Q 005913          424 VYSASFSPLGDFILSS-SADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R--TARIWSMDRIQP  497 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~-s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-g--~v~lwd~~~~~~  497 (670)
                      +...+|+|||+.|+.. +.+|  .|++||+.++..... ..+...+....|+|+|+.|+.++.+ +  .|+++++.++..
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            4467999999988754 4454  588999987765443 3344567889999999998877754 4  455557766654


Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe---E
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT---I  571 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~---I  571 (670)
                      . .+..+.....+..|+|+|++|+..+.+   ..|.+||+.++.... +... .......|+|||++|+.++.++.   +
T Consensus       324 ~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l  400 (429)
T PRK03629        324 Q-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL  400 (429)
T ss_pred             E-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence            3 333344456678999999999886644   358899998887543 3322 23456789999999999887764   6


Q ss_pred             EEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913          572 MMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (670)
Q Consensus       572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~  599 (670)
                      .++++ +|.....+.+|.+.+...+|+|
T Consensus       401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        401 NLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            77787 5666677778888899999987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.4e-13  Score=150.74  Aligned_cols=200  Identities=18%  Similarity=0.178  Sum_probs=142.5

Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECCC--cEEE
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDR--TARI  489 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~dg--~v~l  489 (670)
                      .+..|...+.+.+|+|+|+.|+.++.   +..|++||+.++.... +..+.....+..|+|+|+.++ +.+.+|  .|++
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV  276 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence            34456778999999999999988764   3469999998776543 333344456789999999775 445555  5999


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CC--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ||+.+++. ..+..+.......+|+|+|++|+.++. +|  .|+++|+.+++..+.. .+.......+|||+|++|+..+
T Consensus       277 ~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~  354 (433)
T PRK04922        277 MDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVH  354 (433)
T ss_pred             EECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEE
Confidence            99988764 344555555677899999999888764 34  4777788777654433 3334456789999999998765


Q ss_pred             CCC---eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC---CcEEEEeCCC
Q 005913          567 EDG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTT  620 (670)
Q Consensus       567 ~dg---~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D---g~I~iwd~~~  620 (670)
                      .++   .|.+||+.++... .+. +........|+|||++|+..+.+   +.|.++++..
T Consensus       355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            443   6999999887654 333 22345577999999988777653   3577777754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4.9e-15  Score=151.31  Aligned_cols=281  Identities=21%  Similarity=0.299  Sum_probs=213.9

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+..|.+.|+.+.|+..|..|++|+.|-.|.+||+....                           .......||...|.
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~---------------------------~~l~f~SGH~~Nvf  189 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS---------------------------PKLSFESGHCNNVF  189 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccC---------------------------cccccccccccchh
Confidence            566788999999999999999999999999999987522                           23344568888898


Q ss_pred             EEEEcCCC--CEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeE
Q 005913          426 SASFSPLG--DFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       426 ~l~~sp~~--~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      ...|-|..  .-+++++.||.|++=.+.....   ......|.++|..++.-|+. .-|.+++.|+.+.-+|++...+..
T Consensus       190 QaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~  269 (559)
T KOG1334|consen  190 QAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE  269 (559)
T ss_pred             hhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence            88898853  5799999999999877653332   34455699999999999965 459999999999999998876655


Q ss_pred             Eec---ccCC---CeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCc------EEEEEecC------CCCeEEEEEcCCCC
Q 005913          500 IMA---GHLS---DVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE------CVRIFIGH------RSMILSLAMSPDGR  560 (670)
Q Consensus       500 ~~~---~~~~---~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~------~~~~~~~h------~~~I~~l~~sp~g~  560 (670)
                      .+.   .+..   ....++.+|.. +.+++|+.|..+++||.+.-.      .+..|..|      ...|+|++|+.++.
T Consensus       270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence            443   2223   45678888854 589999999999999987432      12333322      24699999999888


Q ss_pred             EEEEEECCCeEEEEeCCC--C----------eeeEE-eeCCCc--ceEEEEE-cCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          561 YMASGDEDGTIMMWDLAS--G----------RCVTP-LMGHTS--CVWTLAY-SCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~--~----------~~~~~-~~~h~~--~V~sl~~-s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      -|.++-.|-.|+++.-..  |          ..+.. +++|..  .|..+-| .|...++++|+.=|.|.||+-.+++. 
T Consensus       350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei-  428 (559)
T KOG1334|consen  350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI-  428 (559)
T ss_pred             ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH-
Confidence            888888888999995432  2          22333 678863  5777765 78889999999999999999887653 


Q ss_pred             cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                                    +..+.+...-|.||.=+|--.+||+++.|.
T Consensus       429 --------------i~~MegDr~VVNCLEpHP~~PvLAsSGid~  458 (559)
T KOG1334|consen  429 --------------IRFMEGDRHVVNCLEPHPHLPVLASSGIDH  458 (559)
T ss_pred             --------------HHHhhcccceEeccCCCCCCchhhccCCcc
Confidence                          444555555788888899888999887663

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=3.6e-13  Score=147.57  Aligned_cols=202  Identities=13%  Similarity=0.033  Sum_probs=145.8

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECCCc--EE
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRT--AR  488 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~dg~--v~  488 (670)
                      +.+..|...+.+.+|+|||+.|+..+.   +..|++||+.++... .+..+...+....|+|+|..++ +.+.++.  |+
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            445577889999999999999887763   468999999877653 3445566778899999998875 4555554  77


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CC--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      +||+.++.. ..+..+........|+|+|+.|+..+. +|  .|++||+.++...+ +..+.+.+....|+|+|+.|+..
T Consensus       274 ~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        274 TMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEE
Confidence            778887755 445556666778999999999988764 33  68888987766544 33345567778999999999876


Q ss_pred             ECC---CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC------CcEEEEeCCCC
Q 005913          566 DED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD------CTVKLWDVTTS  621 (670)
Q Consensus       566 ~~d---g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D------g~I~iwd~~~~  621 (670)
                      +.+   ..|.+||+..+.. ..+. ....+.+..|+|||+.|+..+.+      ..+.++|+...
T Consensus       352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            643   3688999865543 3332 22346788999999988776543      24667776553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=4.9e-15  Score=152.90  Aligned_cols=213  Identities=27%  Similarity=0.481  Sum_probs=164.2

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+.+|.+-|+|++|+.||.+||+|+.|-.+.|||....                           +.....-.||.+.|.
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---------------------------KllhsI~TgHtaNIF   97 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---------------------------KLLHSISTGHTANIF   97 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhc---------------------------ceeeeeeccccccee
Confidence            36789999999999999999999999999999997531                           234455679999999


Q ss_pred             EEEEcCC--CCEEEEEeCCCeEEEEeCCC----------CceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEEC
Q 005913          426 SASFSPL--GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSM  492 (670)
Q Consensus       426 ~l~~sp~--~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~  492 (670)
                      ++.|-|.  ++.+++|+.|..|+++|+..          ......+..|...|..++..|++ +.|.+++.||+++-+|+
T Consensus        98 svKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDi  177 (758)
T KOG1310|consen   98 SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDI  177 (758)
T ss_pred             EEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecc
Confidence            9999984  46889999999999999984          23456677899999999999988 88999999999999999


Q ss_pred             CCCcee----------EEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCC--------C----------cEEEEE
Q 005913          493 DRIQPL----------RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSS--------G----------ECVRIF  543 (670)
Q Consensus       493 ~~~~~~----------~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~--------~----------~~~~~~  543 (670)
                      +.....          ..+....-...|+..+|. ..+|++|++|-..++||.+.        +          .|++-|
T Consensus       178 REph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf  257 (758)
T KOG1310|consen  178 REPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYF  257 (758)
T ss_pred             cCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhee
Confidence            863211          111122345678999985 46889999999999999531        1          123333


Q ss_pred             e-cCC-----------CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          544 I-GHR-----------SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       544 ~-~h~-----------~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      . +|-           ..++-++|+|+|.-|+..-..-.|+++|+..++....+
T Consensus       258 ~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  258 SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            2 121           12567889999998887766778999999887765443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2e-13  Score=149.47  Aligned_cols=221  Identities=18%  Similarity=0.121  Sum_probs=153.4

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      ..+..+...+.+.+|||||+.|+..+.+   ..|.+|++.+...                             ..+..+.
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----------------------------~~l~~~~  247 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----------------------------ELVASFR  247 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------EEeccCC
Confidence            3455667789999999999999987633   4689999864211                             1122233


Q ss_pred             cCEEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCc--EEEEECCCC
Q 005913          422 GPVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRT--ARIWSMDRI  495 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~--v~lwd~~~~  495 (670)
                      +...+.+|+|+|+.|+ +.+.+|  .|++||+.++.. ..+..+.......+|+|+|++++.++. +|.  |+++++.++
T Consensus       248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            4455789999999775 445555  599999987764 344455555667899999999887764 444  666777776


Q ss_pred             ceeEEecccCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---C
Q 005913          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---G  569 (670)
Q Consensus       496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g  569 (670)
                      +..+.. .+......++|+|+|++|+..+.++   .|.+||+.+++... +. +........|+|||++|+..+.+   +
T Consensus       327 ~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~  403 (433)
T PRK04922        327 SAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATREGGRG  403 (433)
T ss_pred             CeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEecCCce
Confidence            544433 2334455789999999998876443   69999998887653 33 32345567999999988876653   4


Q ss_pred             eEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~  599 (670)
                      .|.++|+. +.....+..+.+.+...+|+|
T Consensus       404 ~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        404 VLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            68888884 445556665667777888886

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.2e-13  Score=148.64  Aligned_cols=190  Identities=18%  Similarity=0.205  Sum_probs=132.5

Q ss_pred             eecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECCCcEEEEE-
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS-  491 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~dg~v~lwd-  491 (670)
                      +..+...+.+.+|+|||+.|+.++.+   ..|++||+.+++... +......+....|+|+|+.++ +.+.+|...+|. 
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            44567789999999999999877643   469999999876543 333344566899999999886 456778766665 


Q ss_pred             -CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CCcEEEE--ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          492 -MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLW--DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       492 -~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iw--d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                       +..+. ...+..+........|+|+|+.|+..+. +|...+|  ++.++...+.. .+.......+|||+|++|+..+.
T Consensus       270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEc
Confidence             44443 4455555555677899999998887654 4555555  54555443332 23334556889999999988765


Q ss_pred             CC---eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913          568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC  611 (670)
Q Consensus       568 dg---~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg  611 (670)
                      ++   .|.+||+.++... .+..+ .......|+|||+.|+.++.++
T Consensus       348 ~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        348 VGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             cCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence            54   6999999887644 33322 2346789999999888877554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=1e-15  Score=164.66  Aligned_cols=233  Identities=21%  Similarity=0.420  Sum_probs=185.1

Q ss_pred             cceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       412 ~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      +.++.+.||...|+|+.|...|.++++|+.|..|+||++.+..++....||.+.|++++.+.++..+++++.|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-----EEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-----IFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      +..+.++..+.+|.+.|++++|+|-.    +.+.||++++||.+-...+.     .+ ....-+.++.|-.++.-++||+
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc-ccccceeeeecccccccccccc
Confidence            99999999999999999999999954    77889999999988111111     11 1224577788888899999999


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  645 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  645 (670)
                      .|+.-..|.+..-.      .+...+.-+.++.+ ..+.+++-.+..+++|++..+.               ++.....|
T Consensus       336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---------------l~H~l~gh  394 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---------------LLHNLMGH  394 (1113)
T ss_pred             CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch---------------hhhhhccc
Confidence            99998888764321      12111111222212 2567778888899999998874               34455678


Q ss_pred             CCCeEEEEEecCCcEEE-EeeCCCCC
Q 005913          646 STPVYSLQFSRRNLLFA-AGALSKTS  670 (670)
Q Consensus       646 ~~~V~~l~fs~~~~~La-~gs~dgs~  670 (670)
                      ..+++.+.|+|-+..++ +++.||++
T Consensus       395 sd~~yvLd~Hpfn~ri~msag~dgst  420 (1113)
T KOG0644|consen  395 SDEVYVLDVHPFNPRIAMSAGYDGST  420 (1113)
T ss_pred             ccceeeeeecCCCcHhhhhccCCCce
Confidence            88899999999876554 56677753

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=2.2e-14  Score=148.14  Aligned_cols=173  Identities=22%  Similarity=0.398  Sum_probs=134.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC-EEEEE
Q 005913          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSS  439 (670)
Q Consensus       361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~  439 (670)
                      +++--|.+|...|.|.+.+........                ++.   ..     ..-....|+|+.|-|.++ .++++
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sk----------------lfn---e~-----r~i~ktsvT~ikWvpg~~~~Fl~a  238 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSK----------------LFN---EE-----RLINKSSVTCIKWVPGSDSLFLVA  238 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHH----------------hhh---hc-----ccccccceEEEEEEeCCCceEEEE
Confidence            567778999999999988865310000                000   00     001237899999999665 56667


Q ss_pred             eCCCeEEEEeCCCC--------------c--------------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          440 SADTTIRLWSTKLN--------------A--------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       440 s~Dg~I~lwd~~~~--------------~--------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      -.+|.+++||....              .              ++..+.-....|..++|+|||++||+.+.||.+||+|
T Consensus       239 ~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~  318 (636)
T KOG2394|consen  239 HASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD  318 (636)
T ss_pred             EecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEee
Confidence            78999999975311              0              1111111234688899999999999999999999999


Q ss_pred             CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC
Q 005913          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (670)
Q Consensus       492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp  557 (670)
                      .++.+.+..++...+...|++|+|||+||++|+.|.-|.||.+..++.+..-.+|...|..++|.|
T Consensus       319 fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  319 FDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999888888888889999999999999999999999999999999999999999999999999983

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=1.7e-13  Score=133.73  Aligned_cols=261  Identities=16%  Similarity=0.234  Sum_probs=178.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (670)
Q Consensus       356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (670)
                      -++|||+|+++|+.+.- .+.|-|..+....                            ..+ .--..|..+.|..+..+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~----------------------------qlf-~cldki~yieW~ads~~   62 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH----------------------------QLF-LCLDKIVYIEWKADSCH   62 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHH----------------------------HHH-HHHHHhhheeeecccee
Confidence            46899999999999544 7777776542111                            111 11356777899988887


Q ss_pred             EE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEE
Q 005913          436 IL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW  513 (670)
Q Consensus       436 L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~  513 (670)
                      ++ ....++.|.+|++...+-...+.....++.+++|||+|+ .+.+...|-.|.+|++.+.+... +......+..++|
T Consensus        63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f  141 (447)
T KOG4497|consen   63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAF  141 (447)
T ss_pred             eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEE
Confidence            65 556788999999999888888888888999999999995 45666788999999998865543 3333455688999


Q ss_pred             cCCCCEEEEEEcC------------------------------------CcEEEEECCCCcEEEEEecCCCCeEEEEEcC
Q 005913          514 HINCNYIATGSSD------------------------------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (670)
Q Consensus       514 ~p~~~~l~tgs~d------------------------------------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp  557 (670)
                      +|+|++.+..+.-                                    ..+.+||---.-.+..+ ...-.+..++|+|
T Consensus       142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP  220 (447)
T KOG4497|consen  142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSP  220 (447)
T ss_pred             CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEecc
Confidence            9999988776532                                    12333432111111111 1224588899999


Q ss_pred             CCCEEEEEECCCeEEEEeCCCCeeeEE-----------------------------------------------------
Q 005913          558 DGRYMASGDEDGTIMMWDLASGRCVTP-----------------------------------------------------  584 (670)
Q Consensus       558 ~g~~l~sg~~dg~I~iwDl~~~~~~~~-----------------------------------------------------  584 (670)
                      .+++|+.|+.|+.+++.+--+.+....                                                     
T Consensus       221 ~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~  300 (447)
T KOG4497|consen  221 CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQM  300 (447)
T ss_pred             ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhh
Confidence            999999999999998865332211110                                                     


Q ss_pred             -------ee------CCCcceEEEEEcCCCCEEEEEECC--CcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913          585 -------LM------GHTSCVWTLAYSCEGSLLASGSAD--CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV  649 (670)
Q Consensus       585 -------~~------~h~~~V~sl~~s~~g~~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  649 (670)
                             ++      ...-.+.-++||+|..++++-...  +.+-+||+...+                +...-....||
T Consensus       301 ~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----------------l~avLiQk~pi  364 (447)
T KOG4497|consen  301 TPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----------------LHAVLIQKHPI  364 (447)
T ss_pred             cceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----------------hhhhhhhccce
Confidence                   01      112236678999999999887644  679999998743                22333455688


Q ss_pred             EEEEEecCCcEEEEe
Q 005913          650 YSLQFSRRNLLFAAG  664 (670)
Q Consensus       650 ~~l~fs~~~~~La~g  664 (670)
                      ..+.|.|....|+..
T Consensus       365 raf~WdP~~prL~vc  379 (447)
T KOG4497|consen  365 RAFEWDPGRPRLVVC  379 (447)
T ss_pred             eEEEeCCCCceEEEE
Confidence            888888876655543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.9e-13  Score=149.19  Aligned_cols=220  Identities=17%  Similarity=0.153  Sum_probs=149.9

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      +..+.+.+.+.+|||||+.||..+.+   ..|.+||+.+..                             ...+....+.
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----------------------------~~~l~~~~g~  241 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----------------------------RRVVANFKGS  241 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----------------------------EEEeecCCCC
Confidence            44566789999999999999877643   358999987521                             1122223345


Q ss_pred             EEEEEEcCCCCEEE-EEeCCCeEEEEe--CCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCcEEEEEC--CCCce
Q 005913          424 VYSASFSPLGDFIL-SSSADTTIRLWS--TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSM--DRIQP  497 (670)
Q Consensus       424 V~~l~~sp~~~~L~-s~s~Dg~I~lwd--~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~--~~~~~  497 (670)
                      +.+.+|+|||+.|+ +.+.+|...||.  +.++. ...+..+........|+|||+.++..+. +|...+|.+  .++..
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence            66889999999876 567788766665  44333 4445555555677899999998887664 456666654  44443


Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---eE
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TI  571 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg---~I  571 (670)
                      .+.. .+.......+|+|+|++|+..+.++   .|.+||+.+++..... .. .......|+|||+.|+.++.++   .+
T Consensus       321 ~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~-~~~~~p~~spdg~~l~~~~~~~g~~~l  397 (427)
T PRK02889        321 QRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT-TRDESPSFAPNGRYILYATQQGGRSVL  397 (427)
T ss_pred             EEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC-CCccCceECCCCCEEEEEEecCCCEEE
Confidence            3322 2223345678999999999877654   6999999888765433 22 3346789999999988876544   46


Q ss_pred             EEEeCCCCeeeEEeeCCCcceEEEEEcCC
Q 005913          572 MMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (670)
Q Consensus       572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~~  600 (670)
                      .+.++ .+.....+..+.+.+...+|+|-
T Consensus       398 ~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        398 AAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            66676 46656666667777888888873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=5.1e-13  Score=130.45  Aligned_cols=269  Identities=17%  Similarity=0.262  Sum_probs=186.9

Q ss_pred             CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          352 NGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      +.|.-+.|+-|.-++. +...++.|.+|++...                            .-........+++.+++||
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp----------------------------ew~ckIdeg~agls~~~WS  100 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP----------------------------EWYCKIDEGQAGLSSISWS  100 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecc----------------------------eeEEEeccCCCcceeeeEC
Confidence            4577788888876655 4577899999998751                            2334455567889999999


Q ss_pred             CCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC--------------------------
Q 005913          431 PLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--------------------------  483 (670)
Q Consensus       431 p~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--------------------------  483 (670)
                      |+|+.|+ +...|-.|.+|++.+...... +-....+..++|+|+|++.+.++.                          
T Consensus       101 PdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~  179 (447)
T KOG4497|consen  101 PDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI  179 (447)
T ss_pred             CCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc
Confidence            9997655 666788999999987655432 222334678889999988777653                          


Q ss_pred             ----------CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-----------
Q 005913          484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-----------  542 (670)
Q Consensus       484 ----------dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-----------  542 (670)
                                +..+.+||.--...+..+ .-.-.+..++|+|.+++|++|+.|+.+|+.+--+.+....           
T Consensus       180 DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~  258 (447)
T KOG4497|consen  180 DLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPT  258 (447)
T ss_pred             cccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCch
Confidence                      123444442111111111 1224688999999999999999999999865422211100           


Q ss_pred             -------------------------------------------------Ee------cCCCCeEEEEEcCCCCEEEEEEC
Q 005913          543 -------------------------------------------------FI------GHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       543 -------------------------------------------------~~------~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                                                                       ++      .....+.-++||+|..+++|-.+
T Consensus       259 ~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd  338 (447)
T KOG4497|consen  259 LHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND  338 (447)
T ss_pred             hhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence                                                             00      11223567899999999998654


Q ss_pred             --CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913          568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  645 (670)
Q Consensus       568 --dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  645 (670)
                        -+.+.+||++..+....+ ....+|....|+|....|+.+.....+++|.......                -..+.+
T Consensus       339 ~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~----------------V~vP~~  401 (447)
T KOG4497|consen  339 KYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV----------------VGVPKK  401 (447)
T ss_pred             CCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE----------------EecCCC
Confidence              367999999876644333 3556899999999998898888888899998766322                233455


Q ss_pred             CCCeEEEEEecCCcEEEEeeCC
Q 005913          646 STPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       646 ~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      .-.|.++.|.-.|..++..+.|
T Consensus       402 GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  402 GFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             CceeeeEEecCCCcEEEEEcCC
Confidence            5689999999999998887776

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.58  E-value=2e-13  Score=152.98  Aligned_cols=219  Identities=17%  Similarity=0.236  Sum_probs=164.1

Q ss_pred             CCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEecCCCEEEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQGHYFAS  480 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~g~~l~s  480 (670)
                      .++..+..+..|+..|..++.++.. .++++||.||+|++|+...-       +...++......+.++.+.+.++.+|+
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            3456677788899999999998766 89999999999999997632       233455556778999999999999999


Q ss_pred             EECCCcEEEEECCCCc-------eeEEecccC-C-CeeEEEEcC-CC-CEEEEEEcCCcEEEEECCCCcEEEEEe--cCC
Q 005913          481 SSHDRTARIWSMDRIQ-------PLRIMAGHL-S-DVDCVRWHI-NC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHR  547 (670)
Q Consensus       481 ~s~dg~v~lwd~~~~~-------~~~~~~~~~-~-~v~~v~~~p-~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~  547 (670)
                      ++.||.|++.+++...       +.+....+. + .|.+-+|.. .+ ..++.++.-+.|..||++.......++  ...
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            9999999999998621       222222222 2 233333332 22 378888889999999998776554433  345


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCC---CCEEEEEE--CCCcEEEEeCCCC
Q 005913          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCE---GSLLASGS--ADCTVKLWDVTTS  621 (670)
Q Consensus       548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~---g~~l~sgs--~Dg~I~iwd~~~~  621 (670)
                      |.|++++.+|.+.++++|+..|.+.+||++-+.++..+. ++..+|..+..+|-   ....++++  ..+.|.+|++.++
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            789999999999999999999999999999998887765 45577888777662   34555554  4678999999998


Q ss_pred             cccccc
Q 005913          622 TKVLKT  627 (670)
Q Consensus       622 ~~~~~~  627 (670)
                      ......
T Consensus      1276 ~~~~vl 1281 (1431)
T KOG1240|consen 1276 LRQTVL 1281 (1431)
T ss_pred             cceEEE
Confidence            654443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.1e-13  Score=135.61  Aligned_cols=246  Identities=17%  Similarity=0.229  Sum_probs=183.0

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      ..|...|.|++|....++|.+|..+|+|...|+.+....                          .+.......+.|+.+
T Consensus       102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi--------------------------~V~~~~~~~~~VY~m  155 (609)
T KOG4227|consen  102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI--------------------------YVANENNNRGDVYHM  155 (609)
T ss_pred             CccccceEEEEEccCCeeEecCCCcceeEeeecccceee--------------------------eeecccCcccceeec
Confidence            445578999999999999999999999999998752111                          011111234699999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCce-eEEe-
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQP-LRIM-  501 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~-~~~~-  501 (670)
                      ..+|..+.|++.+.++.|.+||.+....   .............+.|+| ....|++++..+-+-+||.+..+. +... 
T Consensus       156 ~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~  235 (609)
T KOG4227|consen  156 DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRS  235 (609)
T ss_pred             ccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhh
Confidence            9999999999999999999999986542   233333455678899999 456788888889999999976432 2111 


Q ss_pred             --cccC---CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-------CeEEEEEcCCCCEEEEEECCC
Q 005913          502 --AGHL---SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       502 --~~~~---~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-------~I~~l~~sp~g~~l~sg~~dg  569 (670)
                        .+-.   ..-..+.|+|+|+.+++--....-.+||+.+..+...-..|..       .+.+++|.-|- .+++|+.+-
T Consensus       236 ~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~  314 (609)
T KOG4227|consen  236 MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHW  314 (609)
T ss_pred             ccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCccc
Confidence              1111   2235788999999999887777778899887665433333322       35667777554 499999999


Q ss_pred             eEEEEeCCC----------C-------------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          570 TIMMWDLAS----------G-------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       570 ~I~iwDl~~----------~-------------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      .|++|.+..          |             +.+..+++|.+-+..+.|+|...+|++.+..+.++||.-..
T Consensus       315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence            999998742          1             12345789999999999999999999999999999997543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=2.6e-13  Score=135.62  Aligned_cols=206  Identities=17%  Similarity=0.246  Sum_probs=165.1

Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecC-CCEEEEEECC--CcEE
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHD--RTAR  488 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d--g~v~  488 (670)
                      ......++|.++...  +..|++|-.+|.+.+|....+.    .+..+..+ .++..+.-++. ...+++||..  ..+.
T Consensus       100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk  176 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK  176 (412)
T ss_pred             ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence            344556778777776  5678888999999999988442    23334433 34666666664 4456668888  8999


Q ss_pred             EEECCCCceeEEecccC---------CCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEc
Q 005913          489 IWSMDRIQPLRIMAGHL---------SDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMS  556 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~---------~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~s  556 (670)
                      +||+++.+++..-+.-.         -.++.+.|-+.  ...|++++.-+.+|+||.+.+ +++..|.-...+|+++...
T Consensus       177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~  256 (412)
T KOG3881|consen  177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT  256 (412)
T ss_pred             eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence            99999886665443221         13567888877  889999999999999999965 5677887778899999999


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCCeeeEE-eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          557 PDGRYMASGDEDGTIMMWDLASGRCVTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       557 p~g~~l~sg~~dg~I~iwDl~~~~~~~~-~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      |.|+++++|..-|.+..||++.++.+.. +.+..+.|+++..+|.+++|++||-|..|||+|+.+...+
T Consensus       257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            9999999999999999999999998877 7888999999999999999999999999999999985543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.8e-13  Score=142.31  Aligned_cols=269  Identities=13%  Similarity=0.159  Sum_probs=190.7

Q ss_pred             ecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCc----cceeeeecC--
Q 005913          348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK----RSYTLYQGH--  420 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h--  420 (670)
                      +.+...-+.+..||||+|+ |+|.....|++||+...............    ..-.+++.+-..    ..-+...-|  
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~----V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEV----VDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccc----eeEEEeccchhhheEeecCceeeehhh
Confidence            4455667889999999985 58888999999999875432211100000    000000000000    000001111  


Q ss_pred             ---------ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          421 ---------SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       421 ---------~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                               ...-..++++.-..-|++++....|+-++++.|.-+..+....+.++++..++....|++|+.+|.|-+||
T Consensus       124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence                     11223455554344455555556799999999999999998889999999999999999999999999999


Q ss_pred             CCCCceeEEec------ccCC-----CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCC-
Q 005913          492 MDRIQPLRIMA------GHLS-----DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPD-  558 (670)
Q Consensus       492 ~~~~~~~~~~~------~~~~-----~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~-  558 (670)
                      .+....+..+.      .|.+     .|+++.|+-+|-.+++|+++|.|.|||+++.+++..-. +..-+|..+.|.+. 
T Consensus       204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~  283 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD  283 (703)
T ss_pred             chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence            98776655543      2222     39999999999999999999999999999998876542 23357999999875 


Q ss_pred             -CCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          559 -GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       559 -g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                       +..+++. +...++|||-.+|+....+.. +..+..+|+-|++.+++++-.++.+..|=+..-.
T Consensus       284 ~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  284 QQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             CCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence             4455555 457899999999999888764 3458999999999999999999988888776644

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=9.3e-13  Score=144.32  Aligned_cols=219  Identities=14%  Similarity=0.106  Sum_probs=152.9

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      .+..+...+.+.+|||||+.|+..+.   +..|.+|++.+.                             ....+..+.+
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-----------------------------~~~~l~~~~g  246 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-----------------------------QRELVGNFPG  246 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-----------------------------cEEEeecCCC
Confidence            34566778999999999999987653   467999998642                             1123344566


Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCe--EEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CC--cEEEEECCCCc
Q 005913          423 PVYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQ  496 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg--~v~lwd~~~~~  496 (670)
                      .+.+.+|+|||+.|+ +.+.++.  |++||+.++.. ..+..+........|+|+|++++.++. +|  .|++||+..+.
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence            778889999999775 5555554  77789887654 445556666778999999999887764 33  68888987765


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-----
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-----  568 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-----  568 (670)
                      ..+. ..+...+....|+|+|++|+..+.+   ..|.+||+.++.. +.+. ....+..+.|+|||+.|+..+.+     
T Consensus       326 ~~~l-t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~  402 (435)
T PRK05137        326 PRRI-SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGG  402 (435)
T ss_pred             eEEe-ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCC
Confidence            5443 3344566778999999999887653   3688899865543 3343 23356788999999988775543     


Q ss_pred             -CeEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913          569 -GTIMMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (670)
Q Consensus       569 -g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~  599 (670)
                       ..|.++|+..+.. ..+. ..+.+...+|+|
T Consensus       403 ~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        403 APKLYTVDLTGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             cceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence             3688888866544 3443 244566777776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=7.5e-13  Score=127.86  Aligned_cols=155  Identities=19%  Similarity=0.399  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCeEEEEeCCCC-ceeEEeeC-CCccEeEEEEecCCCEEEEEE--CCCcEEEE
Q 005913          425 YSASFSPLGDFILSSSA----------DTTIRLWSTKLN-ANLVCYKG-HNYPVWDVQFNPQGHYFASSS--HDRTARIW  490 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~----------Dg~I~lwd~~~~-~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s--~dg~v~lw  490 (670)
                      ..+.|+|+|++|+.-..          -|...+|.++.. .....+.- ..++|.+++|+|+|..|++..  .++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45789999998764432          134555555322 23333332 345799999999999986653  56799999


Q ss_pred             ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       491 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      |++ ++++..+.  ...++.+.|+|+|++|++++.+   |.|.+||+++.+.+..+. | ..++.++|+|+|++|++++.
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            997 56666654  4678899999999999998744   679999999888887664 3 34789999999999999874


Q ss_pred             ------CCeEEEEeCCCCeeeEEe
Q 005913          568 ------DGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       568 ------dg~I~iwDl~~~~~~~~~  585 (670)
                            |+.++||+. .|+.+...
T Consensus       164 ~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             ccceeccccEEEEEe-cCeEeEec
Confidence                  788999997 46666543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=7.6e-13  Score=127.83  Aligned_cols=149  Identities=22%  Similarity=0.413  Sum_probs=112.3

Q ss_pred             eEEEEecCCCEEEEEEC----------CCcEEEEECC-CCceeEEecc-cCCCeeEEEEcCCCCEEEEE--EcCCcEEEE
Q 005913          467 WDVQFNPQGHYFASSSH----------DRTARIWSMD-RIQPLRIMAG-HLSDVDCVRWHINCNYIATG--SSDKTVRLW  532 (670)
Q Consensus       467 ~~l~~sp~g~~l~s~s~----------dg~v~lwd~~-~~~~~~~~~~-~~~~v~~v~~~p~~~~l~tg--s~dg~I~iw  532 (670)
                      ..+.|+|.|.+|++-..          -+...+|.++ ...++..+.- ..++|.+++|+|+|+.+++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999988776543          1234455442 2234444432 34579999999999987654  467899999


Q ss_pred             ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC
Q 005913          533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA  609 (670)
Q Consensus       533 d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~---dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~  609 (670)
                      |++ ++.+..+  +...+..+.|||+|++|++|+.   .|.|.+||.++.+.+.... | ..++.++|+|+|++|++++.
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            996 6666655  3567889999999999999874   4679999999988887764 3 34789999999999999874


Q ss_pred             ------CCcEEEEeCCC
Q 005913          610 ------DCTVKLWDVTT  620 (670)
Q Consensus       610 ------Dg~I~iwd~~~  620 (670)
                            |+.++||++..
T Consensus       164 ~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             ccceeccccEEEEEecC
Confidence                  78899999864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=3.7e-12  Score=124.39  Aligned_cols=229  Identities=16%  Similarity=0.204  Sum_probs=159.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECC------CcEEEEECCCC
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHD------RTARIWSMDRI  495 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~d------g~v~lwd~~~~  495 (670)
                      ...+++|+.|...+++|..+| .+||+++-.+.......+...+.-+..--..++++.. |.+      ..|.|||=...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            344599999999999998877 8999987543322222222222112221123454443 332      47999996666


Q ss_pred             ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEEEEecCCCC--eEEEEEcCCCCEEEE-EECCCeE
Q 005913          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSM--ILSLAMSPDGRYMAS-GDEDGTI  571 (670)
Q Consensus       496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~--I~~l~~sp~g~~l~s-g~~dg~I  571 (670)
                      .++..+. ..++|.+|.+.++  .|++. ..+.|++|... +-+.++.+.....|  +.+++-+.+-.+||. |-.-|.|
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            7776665 5688999999765  45544 46789999987 55666665433322  333332223345554 4566999


Q ss_pred             EEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECCCc-EEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913          572 MMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCT-VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP  648 (670)
Q Consensus       572 ~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (670)
                      +|-|+...+.  ...+.+|.+.|.+++.+.+|.++||+|..|+ |||||..+++.+.+..             -......
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R-------------RG~d~A~  228 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR-------------RGVDRAD  228 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee-------------cCCchhe
Confidence            9999987665  4678899999999999999999999999998 8999999987654331             1234567


Q ss_pred             eEEEEEecCCcEEEEeeCCCC
Q 005913          649 VYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       649 V~~l~fs~~~~~La~gs~dgs  669 (670)
                      |++++|||+..+||++|+.||
T Consensus       229 iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             EEEEEeCCCccEEEEEcCCCe
Confidence            999999999999999999886

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=4e-12  Score=127.26  Aligned_cols=221  Identities=13%  Similarity=0.202  Sum_probs=165.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..|..++..  ...|.+|..+|.+.+|........                        ......+..+ .++..+.-++
T Consensus       106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~h------------------------ss~l~~la~g-~g~~~~r~~~  158 (412)
T KOG3881|consen  106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLH------------------------SSKLIKLATG-PGLYDVRQTD  158 (412)
T ss_pred             ccccchhhc--CCEEEEEecCCcEEEEeccCCccc------------------------cccceeeecC-CceeeeccCC
Confidence            344444443  235777789999999997641110                        1122222222 5667777777


Q ss_pred             CCCE-EEEEeCC--CeEEEEeCCCCceeEEeeCC-------Ccc--EeEEEEecC--CCEEEEEECCCcEEEEECCCC-c
Q 005913          432 LGDF-ILSSSAD--TTIRLWSTKLNANLVCYKGH-------NYP--VWDVQFNPQ--GHYFASSSHDRTARIWSMDRI-Q  496 (670)
Q Consensus       432 ~~~~-L~s~s~D--g~I~lwd~~~~~~~~~~~~h-------~~~--V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~-~  496 (670)
                      ...+ +++|+..  ..+.+||+...+.+..-+.-       .-|  ++++.|-+.  ...|++++.-+.+++||.+.+ +
T Consensus       159 ~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR  238 (412)
T KOG3881|consen  159 TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR  238 (412)
T ss_pred             CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence            6654 5568888  78999999977544433321       123  446788886  788999999999999999854 5


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                      |+..+.-...++.++...|.+++|++|..-|.+..+|+++++.... +.+..+.|++|..+|.+++++++|-|..++|+|
T Consensus       239 PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  239 PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence            7888887788999999999999999999999999999999998876 888899999999999999999999999999999


Q ss_pred             CCCCeeeEEeeCCCcceEEEEEcCC
Q 005913          576 LASGRCVTPLMGHTSCVWTLAYSCE  600 (670)
Q Consensus       576 l~~~~~~~~~~~h~~~V~sl~~s~~  600 (670)
                      +.+.+++.... -.+.++++.+.++
T Consensus       319 ~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  319 IKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             cccchhhhhhh-hhccccEEEecCC
Confidence            99976664432 2234566666543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=2.7e-11  Score=132.31  Aligned_cols=199  Identities=19%  Similarity=0.181  Sum_probs=141.3

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCC--cEE
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TAR  488 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg--~v~  488 (670)
                      +.+..+...+.+.+|+|+|++|+.++.+   ..|++||+.++.... +..+...+.++.|+|+|+.|+.. +.++  .|+
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            3344566778899999999999877643   479999998775443 33355566778999999877654 4443  588


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      +|++.++... .+..+........|+|+|+.|+.++.. +  .|++||+.+++..+ +..+...+..+.|+|+|++|+.+
T Consensus       262 ~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       262 VMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             EEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEE
Confidence            9999876543 344454555678999999998876643 3  68888988776543 44455667888999999999988


Q ss_pred             ECCC---eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC---cEEEEeC
Q 005913          566 DEDG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDV  618 (670)
Q Consensus       566 ~~dg---~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg---~I~iwd~  618 (670)
                      +.++   .|.+||+.++... .+... .......|+|+|+.|+.++.++   .+.+.+.
T Consensus       340 ~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       340 HREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             EccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            8776   8999999876432 23222 2335568999999888877664   3444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=4.7e-11  Score=130.90  Aligned_cols=200  Identities=17%  Similarity=0.132  Sum_probs=137.1

Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEE-EECCC--cEEE
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDR--TARI  489 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s-~s~dg--~v~l  489 (670)
                      .+..+...+.+.+|+|+|+.|+..+.+   ..|.+|++.++..... ....+.+....|+|+|+.++. .+.+|  .|++
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            344566788999999999998876643   4699999987765432 223334557899999998874 44454  6888


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-C--CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-D--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-d--g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ||+.++... .+..+........|+|+|+.|+..+. +  ..|+++|+.+++..+... .........|+|+|++|+..+
T Consensus       272 ~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        272 MDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             EECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEE
Confidence            899887644 34445555677899999998877654 3  368888988887554332 223345678999999998776


Q ss_pred             CC-C--eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC-C--cEEEEeCCC
Q 005913          567 ED-G--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-C--TVKLWDVTT  620 (670)
Q Consensus       567 ~d-g--~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-g--~I~iwd~~~  620 (670)
                      .+ +  .|.+||+.++... .+. +........|+|+|+.++..+.+ |  .|.++++..
T Consensus       350 ~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        350 RQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            43 3  5889999887643 232 22223356899999988877654 3  466666643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=1.2e-10  Score=123.62  Aligned_cols=268  Identities=13%  Similarity=0.100  Sum_probs=170.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC
Q 005913          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (670)
Q Consensus       355 ~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (670)
                      ..+.|+|||+++.+++.||.|.++|+.+.+                            ........ ....++++|+||+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----------------------------~v~~i~~G-~~~~~i~~s~DG~   90 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK----------------------------VVATIKVG-GNPRGIAVSPDGK   90 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSS----------------------------EEEEEE-S-SEEEEEEE--TTT
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCccc----------------------------EEEEEecC-CCcceEEEcCCCC
Confidence            447799999999999999999999998632                            23333322 3467899999999


Q ss_pred             EEEEEe-CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEEecCCCEEEEEECC-CcEEEEECCCCceeEE-eccc
Q 005913          435 FILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSHD-RTARIWSMDRIQPLRI-MAGH  504 (670)
Q Consensus       435 ~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~d-g~v~lwd~~~~~~~~~-~~~~  504 (670)
                      ++++++ ..+++.++|..+.+.+..+...       ...+..+..+|....++..-.| +.|.+.|....+.+.. ....
T Consensus        91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~  170 (369)
T PF02239_consen   91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV  170 (369)
T ss_dssp             EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred             EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence            988665 6899999999999988877643       3457788888888867666554 7888888877655432 2223


Q ss_pred             CCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEEe----cCCCCeEEEEEcCC----------CCEEEEEECCC
Q 005913          505 LSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFI----GHRSMILSLAMSPD----------GRYMASGDEDG  569 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~----~h~~~I~~l~~sp~----------g~~l~sg~~dg  569 (670)
                      ........|+|+++|++++ .....|.++|..+++.+..+.    .|..++..+ .+|.          +...++.-..+
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~  249 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTD  249 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCC
Confidence            3456788999999998775 456789999999998876653    233344332 2222          22332333334


Q ss_pred             eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE----ECCCcEEEEeCCCCccccccccccCCcccccccccCC-
Q 005913          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG----SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-  644 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  644 (670)
                      .+.+||..+++.++++....++ .-+..+|+++++.+.    ...++|.|+|..+.+..               .++.. 
T Consensus       250 ~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~---------------~~i~~~  313 (369)
T PF02239_consen  250 PVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV---------------KTITPG  313 (369)
T ss_dssp             TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE---------------E-HHHH
T ss_pred             ccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee---------------EEEecc
Confidence            5678999999999999877666 677789999999998    44589999999886432               12111 


Q ss_pred             CCCCeEEEEEecCCcEEEEeeCCC
Q 005913          645 KSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       645 ~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ....+.++.|+++|..+..+..++
T Consensus       314 ~~~~~~h~ef~~dG~~v~vS~~~~  337 (369)
T PF02239_consen  314 PGKRVVHMEFNPDGKEVWVSVWDG  337 (369)
T ss_dssp             HT--EEEEEE-TTSSEEEEEEE--
T ss_pred             CCCcEeccEECCCCCEEEEEEecC
Confidence            112499999999999887776654

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=4.8e-13  Score=136.96  Aligned_cols=267  Identities=20%  Similarity=0.314  Sum_probs=199.5

Q ss_pred             ceecCCCCCCceeEEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~--d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ++.+|.........-..-+|...|....|-|  +.+-+++++.||.|++=.+...+                        
T Consensus       165 ~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~------------------------  220 (559)
T KOG1334|consen  165 QVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG------------------------  220 (559)
T ss_pred             eEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc------------------------
Confidence            4556666555555444556777787777876  35668888899999887765311                        


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEe---eCCCc---cEeEEEEecCCC-EEEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCY---KGHNY---PVWDVQFNPQGH-YFAS  480 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~---~V~~l~~sp~g~-~l~s  480 (670)
                       .......+..|.++|.-++.-|+.. -|.+++.|+.+.-+|++.......+   ..+..   ....++..|... .|++
T Consensus       221 -~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV  299 (559)
T KOG1334|consen  221 -YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV  299 (559)
T ss_pred             -ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence             1223455678999999999999876 4889999999999999876543322   22333   467888888554 7999


Q ss_pred             EECCCcEEEEECCCCce------eEEec------ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC--C---------
Q 005913          481 SSHDRTARIWSMDRIQP------LRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--G---------  537 (670)
Q Consensus       481 ~s~dg~v~lwd~~~~~~------~~~~~------~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~--~---------  537 (670)
                      |+.|..+++||.+....      +..+.      ...-.|+|++|+.++.-+++...|-.|+++.-.-  |         
T Consensus       300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~  379 (559)
T KOG1334|consen  300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR  379 (559)
T ss_pred             CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch
Confidence            99999999999875322      22222      2234589999998888888888999999995432  2         


Q ss_pred             -cEE-EEEecCCCC--eEEEE-EcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCc
Q 005913          538 -ECV-RIFIGHRSM--ILSLA-MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT  612 (670)
Q Consensus       538 -~~~-~~~~~h~~~--I~~l~-~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~  612 (670)
                       ..+ +.+++|...  |-.+- |-|...|+++|++-|.|.||+-.+++.+.-+.+...-|.||.=+|.-.+||++|-|..
T Consensus       380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~D  459 (559)
T KOG1334|consen  380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHD  459 (559)
T ss_pred             hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccc
Confidence             222 337788653  55555 4678899999999999999999999999988887779999999999999999999999


Q ss_pred             EEEEeCCCCc
Q 005913          613 VKLWDVTTST  622 (670)
Q Consensus       613 I~iwd~~~~~  622 (670)
                      |+||--....
T Consensus       460 VKIWTP~~~e  469 (559)
T KOG1334|consen  460 VKIWTPLTAE  469 (559)
T ss_pred             eeeecCCccc
Confidence            9999875443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=9.1e-12  Score=129.90  Aligned_cols=234  Identities=15%  Similarity=0.195  Sum_probs=172.5

Q ss_pred             ecCccCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeE---------E-------------------eeCC------
Q 005913          418 QGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLV---------C-------------------YKGH------  462 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~---------~-------------------~~~h------  462 (670)
                      -+|....+.|..+|||+|+ ++|..--.|++||+.......         .                   +.-|      
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h  127 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH  127 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence            3678888999999999986 467778899999986432110         0                   0001      


Q ss_pred             -----CccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q 005913          463 -----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG  537 (670)
Q Consensus       463 -----~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~  537 (670)
                           ...-.+++++.-..-+++++....|+-++++.|.-+..+....+.+++|..++-..+|++|+.+|.|..||.++.
T Consensus       128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence                 011234444443334556666678999999999999989888899999999999999999999999999999988


Q ss_pred             cEEEEEe------cCCC-----CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCC--CCE
Q 005913          538 ECVRIFI------GHRS-----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCE--GSL  603 (670)
Q Consensus       538 ~~~~~~~------~h~~-----~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~--g~~  603 (670)
                      ..+..+.      .|.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +..-+|..+.|.+.  ++.
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~  287 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK  287 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence            7666553      2333     39999999999999999999999999999988875432 33468899999775  344


Q ss_pred             EEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          604 LASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       604 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      |+|. ....++|||-.++......                .....+..+++-|++-++.+|-.++
T Consensus       288 v~S~-Dk~~~kiWd~~~Gk~~asi----------------Ept~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  288 VVSM-DKRILKIWDECTGKPMASI----------------EPTSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             EEec-chHHhhhcccccCCceeec----------------cccCCcCceeeecCCceEEEecCCC
Confidence            5544 3568999998887643221                1233588888888887777776543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.44  E-value=2.5e-11  Score=132.54  Aligned_cols=218  Identities=17%  Similarity=0.117  Sum_probs=148.0

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      .+..+...+.+.+|||||++||.+..+   ..|.+|++.+..                             ...+..+.+
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-----------------------------~~~~~~~~~  234 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-----------------------------REKVASFPG  234 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----------------------------EEEeecCCC
Confidence            345556678999999999999987654   469999986421                             122233455


Q ss_pred             CEEEEEEcCCCCEEEE-EeCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-C--cEEEEECCCCc
Q 005913          423 PVYSASFSPLGDFILS-SSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R--TARIWSMDRIQ  496 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s-~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-g--~v~lwd~~~~~  496 (670)
                      .+.+++|+|+|+.|+. .+.++  .|++|++.++... .+..+........|+|+|++++.++.. +  .|++|++.+++
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            6677899999997764 44444  5888998876543 333444455677899999988776643 3  58888887766


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---e
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---T  570 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg---~  570 (670)
                      .. .+..+...+..+.|+|+|++++.++.++   .|.+||+.++.... +... .......|+|+|++|+.++.++   .
T Consensus       314 ~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~  390 (417)
T TIGR02800       314 VR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGV  390 (417)
T ss_pred             EE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEE
Confidence            44 3444556677889999999999988776   79999998865433 3222 2345678999999888876654   4


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEE
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAY  597 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~  597 (670)
                      +.+.+. .+.....+..+.+.+..++|
T Consensus       391 l~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       391 LGLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             EEEEEC-CCceeeECCCCCCCcCCCCC
Confidence            555554 44445555544555555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=4.2e-11  Score=131.28  Aligned_cols=221  Identities=15%  Similarity=0.103  Sum_probs=146.4

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      .+..+...+.+..|||||+.||..+.+   ..|.+|++.+...                             ..+....+
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----------------------------~~l~~~~g  243 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----------------------------EQITNFEG  243 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----------------------------EEccCCCC
Confidence            344556778999999999999876543   3588888764211                             11112223


Q ss_pred             CEEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CC--cEEEEECCCCc
Q 005913          423 PVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQ  496 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg--~v~lwd~~~~~  496 (670)
                      .+...+|+|+|+.|+ +.+.+|  .|++||+.++... .+..+........|+|+|..++..+. +|  .|+++++.+++
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            445689999999877 444455  5888899876543 34445555677899999998877653 33  57778887776


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---Ce
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT  570 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g~  570 (670)
                      ..+... .........|+|+|++|+..+.+ +  .|.+||+.+++.... .. ........|+|+|+.++..+.+   ..
T Consensus       323 ~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        323 AERVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             EEEeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEEEEecCCceE
Confidence            544332 22334457899999999887653 2  588999988875433 22 2233456899999998876643   35


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEcCC
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~  600 (670)
                      |.++++. +.....+..+.+.+...+|+|-
T Consensus       400 l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        400 LMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            7777874 4444455555566777788763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=6e-11  Score=130.03  Aligned_cols=200  Identities=17%  Similarity=0.157  Sum_probs=132.9

Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEE-EECCCc--EEE
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSA-D--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRT--ARI  489 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~-D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s-~s~dg~--v~l  489 (670)
                      .+..+...+.+..|+|||+.|+..+. +  ..|++||+.+++.... ...........|+|+|+.|+. .+.+|.  |++
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            34455678889999999999887654 2  3588899987764332 222233446899999998765 455664  777


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CC--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ||+.+++.. .+..+.......+|+|+|++|+..+. ++  .|+++|+.+++..+.. .........+|+|||++|+..+
T Consensus       291 ~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        291 VDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             EECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEE
Confidence            888877544 34445556678899999998877654 33  5777888877765432 2223344678999999988765


Q ss_pred             C-CC--eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC-Cc--EEEEeCCC
Q 005913          567 E-DG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-CT--VKLWDVTT  620 (670)
Q Consensus       567 ~-dg--~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-g~--I~iwd~~~  620 (670)
                      . ++  .|.++|+.++... .+... .......|+|+|+.|+..+.+ |.  +.+++...
T Consensus       369 ~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        369 RTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             ecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            4 33  5667888877643 23222 122345899999987766644 33  66666643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.43  E-value=6.4e-12  Score=139.62  Aligned_cols=197  Identities=20%  Similarity=0.337  Sum_probs=160.3

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCC----ccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      ..|....+.-+...++.++.+..+.+||...+.......+..    .+..-+.++++.-++++|+.-+.|.+|+......
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            344444455566778888888999999998766555444322    1222344566778999999999999999874333


Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      -..+.+|.+.+..+.|+-+|.++++.|.|+++|+|++.+.+... ..-+|.+.|..++|.|+  .+++++.|.+.++|+.
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            33678999999999999999999999999999999999988776 66689999999999998  9999999999999975


Q ss_pred             CCCeeeEEeeCCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          577 ASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       577 ~~~~~~~~~~~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      . +..+..+.+|. ..|+.++..++..+++|++.||.+++|++...
T Consensus       246 ~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  246 N-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             c-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            4 55566788887 67999999999999999999999999998764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.1e-10  Score=126.97  Aligned_cols=201  Identities=17%  Similarity=0.160  Sum_probs=131.7

Q ss_pred             CccCEEEEEEcCCCCE--E-EEEeCC--CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-----CCcEEE
Q 005913          420 HSGPVYSASFSPLGDF--I-LSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-----DRTARI  489 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~--L-~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-----dg~v~l  489 (670)
                      ....+.+-+|||||+.  + ++...+  ..|++.++.+++..... ...+......|+|||+.|+..+.     +..+.+
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            4455667799999975  2 244334  35778888877543332 23334556899999998887653     223444


Q ss_pred             EECCC---CceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEE--EECCC-CcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913          490 WSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRL--WDVSS-GECVRIFIGHRSMILSLAMSPDGRYM  562 (670)
Q Consensus       490 wd~~~---~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~i--wd~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l  562 (670)
                      |++..   +.+.+...++.......+|+|||+.|+..+ .+|...+  +++.. +...+.+..+...+....|||||+.|
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            77664   333444433334456789999999888766 4564444  45542 33344555555677889999999998


Q ss_pred             EEEECC---CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCc
Q 005913          563 ASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---DCTVKLWDVTTST  622 (670)
Q Consensus       563 ~sg~~d---g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~---Dg~I~iwd~~~~~  622 (670)
                      +..+.+   ..|.+||+.+++.. .+......+.+..|+|||+.|+..+.   .+.|.+||+..+.
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            876543   47999999888754 33333445678999999998875443   3468888887654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=6.1e-11  Score=129.00  Aligned_cols=222  Identities=14%  Similarity=0.116  Sum_probs=141.3

Q ss_pred             cCCCCEEEEEEcCCCCEE---EEEeCCCc--EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          349 NTHNGLNCASISQDGSLV---AGGFSDSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~L---a~g~~dg~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      .....+.+-+|||||+.+   ++...+|.  |.+.++.+..                          .   ..+....+.
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------------------------~---~~lt~~~g~  232 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------------------------G---KKILALQGN  232 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--------------------------c---eEeecCCCC
Confidence            344567788999999753   25555555  4455554311                          1   112223344


Q ss_pred             EEEEEEcCCCCEEEEEeC-CC----eEEEEeCCCC---ceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEE--EC
Q 005913          424 VYSASFSPLGDFILSSSA-DT----TIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW--SM  492 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~-Dg----~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lw--d~  492 (670)
                      ....+|||||+.|+..+. +|    .+.+|++..+   .......++.......+|+|||+.|+..+ .+|...+|  ++
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            556899999998886553 22    3444776653   22333333333456789999999888766 46655555  44


Q ss_pred             CC-CceeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC-
Q 005913          493 DR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-  567 (670)
Q Consensus       493 ~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~-  567 (670)
                      +. +.....+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++..... .....+....|+|||+.|+..+. 
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC
Confidence            32 23344455455667889999999999876543   46999999988775443 33445778999999998875433 


Q ss_pred             --CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCC
Q 005913          568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG  601 (670)
Q Consensus       568 --dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g  601 (670)
                        .+.|++||+..++... +....+.+...+|+|-.
T Consensus       392 ~g~~~L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        392 SNESELYLISLITKKTRK-IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCceEEEEECCCCCEEE-eecCCCcccCceecCCC
Confidence              3578999998776443 33344556778888743

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=2.3e-11  Score=129.44  Aligned_cols=285  Identities=16%  Similarity=0.187  Sum_probs=200.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      .+....|++|+....++|+|+.||.++|-.+.+.........+             ...........+.||++.|.-+.|
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gl-------------aa~snLsmNQtLeGH~~sV~vvTW   79 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGL-------------AAASNLSMNQTLEGHNASVMVVTW   79 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccc-------------ccccccchhhhhccCcceEEEEEe
Confidence            3556899999999999999999999999998763322211110             011223345678899999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEe--eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~  507 (670)
                      +.+.+.|-++..+|.|.+|-+-.+......  ....+-|.+++|..+|..++....||.|.+=.++....- --.-....
T Consensus        80 Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw-gKeLkg~~  158 (1189)
T KOG2041|consen   80 NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW-GKELKGQL  158 (1189)
T ss_pred             ccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec-chhcchhe
Confidence            999999999999999999998766543221  224567899999999999999999999988877653221 11111123


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCC-------cEEE----EEecCCCCeEEEEEc--------CCCCEEEEEECC
Q 005913          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSG-------ECVR----IFIGHRSMILSLAMS--------PDGRYMASGDED  568 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-------~~~~----~~~~h~~~I~~l~~s--------p~g~~l~sg~~d  568 (670)
                      ...+.|++|...++.+-.+|.+.+||.+..       .+..    .+......|..+.|.        |+...|+.+-.+
T Consensus       159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n  238 (1189)
T KOG2041|consen  159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN  238 (1189)
T ss_pred             ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence            446889999999999999999999997532       1211    122222335566663        477899999999


Q ss_pred             CeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCC---------cEEEEeCCCCccccccccccCCccccc
Q 005913          569 GTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---------TVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       569 g~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg---------~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      |.+.|..-.+. .++..-  -.-.|....|+++|.+|+.+|.|.         .|.+|.--.                ..
T Consensus       239 Gr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----------------~i  300 (1189)
T KOG2041|consen  239 GRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----------------HI  300 (1189)
T ss_pred             ceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch----------------hh
Confidence            99888754433 232221  124678899999999999998763         233332211                23


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      +.++....+-|++++|-..|..+|.+.+
T Consensus       301 ~gtlkvpg~~It~lsWEg~gLriA~Avd  328 (1189)
T KOG2041|consen  301 VGTLKVPGSCITGLSWEGTGLRIAIAVD  328 (1189)
T ss_pred             eEEEecCCceeeeeEEcCCceEEEEEec
Confidence            5677777888999999999998887654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.39  E-value=2.3e-09  Score=113.81  Aligned_cols=249  Identities=15%  Similarity=0.237  Sum_probs=166.3

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          348 INTHNGLNCASISQDGSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      .........++++|++++|.+...    +|.|..|.+....                        +..............
T Consensus        33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------------------------g~L~~~~~~~~~g~~   88 (345)
T PF10282_consen   33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT------------------------GTLTLLNSVPSGGSS   88 (345)
T ss_dssp             EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT------------------------TEEEEEEEEEESSSC
T ss_pred             ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc------------------------ceeEEeeeeccCCCC
Confidence            334556778899999999998876    5689999877521                        011122222223445


Q ss_pred             EEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEE----ee----------CCCccEeEEEEecCCCEEEEEEC-CCcE
Q 005913          424 VYSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC----YK----------GHNYPVWDVQFNPQGHYFASSSH-DRTA  487 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~~~~----~~----------~h~~~V~~l~~sp~g~~l~s~s~-dg~v  487 (670)
                      ...++++|++++|+++. .+|+|.++++.....+..    +.          .......++.|+|+|+++++... ...|
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            56799999999998887 589999999987432221    11          12345678999999999888753 3589


Q ss_pred             EEEECCCCc--e--eEEe-cccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECC--CCcE--EEEEec----C--CCCeE
Q 005913          488 RIWSMDRIQ--P--LRIM-AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIG----H--RSMIL  551 (670)
Q Consensus       488 ~lwd~~~~~--~--~~~~-~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~~~--~~~~~~----h--~~~I~  551 (670)
                      .+|+++...  .  ...+ .......+.++|+|+++++++.. .+++|.++++.  ++..  +.....    .  .....
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            999987654  2  1222 24456788999999999887765 46789999888  4432  222221    1  12578


Q ss_pred             EEEEcCCCCEEEEEE-CCCeEEEEeCC--CCe--eeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 005913          552 SLAMSPDGRYMASGD-EDGTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT  620 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~-~dg~I~iwDl~--~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~  620 (670)
                      .|+++|||++|+++. ..+.|.+|++.  ++.  .+..+.........++++|+|++|+++. .++.|.+|+++.
T Consensus       249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            899999999988765 56789999993  232  3334433344578999999999999887 557899998854

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.39  E-value=1.3e-09  Score=115.55  Aligned_cols=237  Identities=14%  Similarity=0.201  Sum_probs=158.9

Q ss_pred             ccCEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--c--eeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEE
Q 005913          421 SGPVYSASFSPLGDFILSSSA----DTTIRLWSTKLN--A--NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS  491 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~----Dg~I~lwd~~~~--~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd  491 (670)
                      ......++++|++++|.++..    +|.|..|++...  .  .+............++++|++.+++++. .+|++.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            345566889999999998876    578999988764  2  2223332344556799999999999887 589999999


Q ss_pred             CCC-CceeEE---ec----------ccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCc--EE--EEE-ecCCCCeE
Q 005913          492 MDR-IQPLRI---MA----------GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGE--CV--RIF-IGHRSMIL  551 (670)
Q Consensus       492 ~~~-~~~~~~---~~----------~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~--~~--~~~-~~h~~~I~  551 (670)
                      ++. +.....   +.          .......++.|+|+++++++... ...|++|++....  ..  ..+ .......+
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            986 332222   21          12345779999999999888653 3579999987654  32  122 23445678


Q ss_pred             EEEEcCCCCEEEEEE-CCCeEEEEeCC--CCe--eeEEeeC----CC--cceEEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 005913          552 SLAMSPDGRYMASGD-EDGTIMMWDLA--SGR--CVTPLMG----HT--SCVWTLAYSCEGSLLASGS-ADCTVKLWDVT  619 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~-~dg~I~iwDl~--~~~--~~~~~~~----h~--~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~  619 (670)
                      .++|+|+|+++++.. .++.|.++++.  ++.  .+..+..    ..  .....+.++|||++|+++. .+++|.+|++.
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            999999999887655 57889999988  442  2222221    11  2577899999999877765 56789999995


Q ss_pred             CCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ....           .+..+..+++.......++|+|+|++|+++..+.
T Consensus       276 ~~~g-----------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  276 PATG-----------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             TTTT-----------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             cCCC-----------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence            4321           1123444444455578999999999999887654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1e-10  Score=128.26  Aligned_cols=218  Identities=15%  Similarity=0.085  Sum_probs=141.8

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFS-DS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~-dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      ......+.+..|||||+.|+..+. ++  .|.+||+.+...                          ..   +....+..
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------------------------~~---lt~~~g~~  264 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------------------------EK---VTSFPGIN  264 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EE---ecCCCCCc
Confidence            344556789999999999987643 33  477777654211                          01   11112233


Q ss_pred             EEEEEcCCCCEEEE-EeCCCe--EEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CC--cEEEEECCCCcee
Q 005913          425 YSASFSPLGDFILS-SSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPL  498 (670)
Q Consensus       425 ~~l~~sp~~~~L~s-~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg--~v~lwd~~~~~~~  498 (670)
                      ...+|+|||+.|+. .+.+|.  |++||+.+++. ..+..+........|+|+|+.++..+. ++  .|+++|+.+++..
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            46799999998764 556664  77788887654 334445555677899999998877653 33  5666788777654


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEE
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIM  572 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-g--~I~  572 (670)
                      +... ........+|+|+|++|+..+.+ +  .|.++|+.+++... +... .......|+|+|+.|+..+.+ |  .+.
T Consensus       344 ~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        344 RLTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             EEec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence            4321 22233457899999999886653 3  46667888876543 3322 122345899999988765543 3  377


Q ss_pred             EEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913          573 MWDLASGRCVTPLMGHTSCVWTLAYSC  599 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~~~V~sl~~s~  599 (670)
                      +++. +|.....+..+.+.+...+|+|
T Consensus       421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        421 AVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEEC-CCCceEECcCCCCCcCCCccCC
Confidence            7886 5666666766667778888887

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.36  E-value=5.7e-11  Score=125.15  Aligned_cols=188  Identities=19%  Similarity=0.284  Sum_probs=156.2

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeC---CCccEeEEEEe--------------------cCCCEEEEEECCCcE
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG---HNYPVWDVQFN--------------------PQGHYFASSSHDRTA  487 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~---h~~~V~~l~~s--------------------p~g~~l~s~s~dg~v  487 (670)
                      |...++|..+.||.+++|+...++....|..   -.+...+..|.                    .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4467899999999999999998877665542   12223333332                    133567778889999


Q ss_pred             EEEECCCCceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          488 RIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      .+|++..++....+.  .|.+.|+++.++.+-..|.+++.|+.+..|+...++.++.+......+.+++.+|||..++++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999998887776  789999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCC-----CCEEE-EEECCCcEEEEeCCC
Q 005913          566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-----GSLLA-SGSADCTVKLWDVTT  620 (670)
Q Consensus       566 ~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~-----g~~l~-sgs~Dg~I~iwd~~~  620 (670)
                      +  +.|.+||+.+++.+..|.+|.++|.+++|.-+     |.++. +...+.-+.+|-+..
T Consensus       163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            7  68999999999999999999999999999776     55544 445566788887765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=5.3e-10  Score=117.06  Aligned_cols=263  Identities=16%  Similarity=0.267  Sum_probs=165.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ....+..++|++|+++|.+ .+..++|++.....                              ..+......++++.|+
T Consensus        34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~------------------------------~~lt~~~~~~~~L~fS   82 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLK------------------------------VVLCVELKKTYDLLFS   82 (566)
T ss_pred             CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCc------------------------------EEEEeccceeeeeeec
Confidence            3447788999999999988 67789999876421                              1111122378999999


Q ss_pred             CCCCEEEEE-----eCC-----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913          431 PLGDFILSS-----SAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       431 p~~~~L~s~-----s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      |.|.+|.+-     ..+     -.+.+|++.++.....+......-|+..|++|..+.+-- ..+.+++|++...+.+..
T Consensus        83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~  161 (566)
T KOG2315|consen   83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH  161 (566)
T ss_pred             ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee
Confidence            999988753     222     347799999854444444433334788888876543322 235677777654221111


Q ss_pred             ecccCCCeeEEE----------------------------------------------------EcCCCCEEEE---EEc
Q 005913          501 MAGHLSDVDCVR----------------------------------------------------WHINCNYIAT---GSS  525 (670)
Q Consensus       501 ~~~~~~~v~~v~----------------------------------------------------~~p~~~~l~t---gs~  525 (670)
                       .-|...|..+.                                                    |++-|+-|++   ..-
T Consensus       162 -kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  162 -KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             -eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEee
Confidence             11233344444                                                    4443332211   111


Q ss_pred             C---------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE--EECCCeEEEEeCCCCeeeEEeeCCCcceEE
Q 005913          526 D---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWT  594 (670)
Q Consensus       526 d---------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s--g~~dg~I~iwDl~~~~~~~~~~~h~~~V~s  594 (670)
                      |         .++++.++. |.....--...++|.++.|+|+|+-+++  |-.--.+.|||++ +.++..+  ..++=.+
T Consensus       241 Dktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~  316 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNT  316 (566)
T ss_pred             cCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccc
Confidence            2         235555544 2222222234689999999999987665  4566789999985 4555444  4566678


Q ss_pred             EEEcCCCCEEEEEECC---CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          595 LAYSCEGSLLASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       595 l~~s~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      +-|+|.|++|+.+|.+   |.|-|||+.+.+.               +..+...  .-+-+.|+|||.++.+++..
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~---------------i~~~~a~--~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL---------------IAKFKAA--NTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhh---------------ccccccC--CceEEEEcCCCcEEEEEecc
Confidence            9999999999998865   7899999988433               3333332  34557899999999998754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.32  E-value=7.1e-09  Score=110.20  Aligned_cols=256  Identities=16%  Similarity=0.174  Sum_probs=161.8

Q ss_pred             CEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC
Q 005913          364 SLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (670)
Q Consensus       364 ~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D  442 (670)
                      ++++ +-..+|.|.|.|..+                            .+....+......-..+.|+|||+++++++.|
T Consensus         6 ~l~~V~~~~~~~v~viD~~t----------------------------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd   57 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT----------------------------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRD   57 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-----------------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETT
T ss_pred             cEEEEEecCCCEEEEEECCC----------------------------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCC
Confidence            4454 455689999999765                            22334444333334557899999999999999


Q ss_pred             CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEeccc-------CCCeeEEEEc
Q 005913          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH-------LSDVDCVRWH  514 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~-------~~~v~~v~~~  514 (670)
                      |.|.++|+.+.+.+..++.... ..+++++++|+++++++ .++.+.++|.++.++++.+...       .+.+..+..+
T Consensus        58 g~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   58 GTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS  136 (369)
T ss_dssp             SEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred             CeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence            9999999999999988886554 57899999999988776 6899999999999999887632       3457788888


Q ss_pred             CCCCEEEEEEc-CCcEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCeeeEEee----C
Q 005913          515 INCNYIATGSS-DKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLM----G  587 (670)
Q Consensus       515 p~~~~l~tgs~-dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~~~~~~~----~  587 (670)
                      |....+++.-. .+.|.+.|....+.+. .............|+|++++++++ ..++.|-++|..+++.+..+.    .
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p  216 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP  216 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred             CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence            88886655544 4889888987665432 233344567889999999987664 567799999999998876653    2


Q ss_pred             CCcceEEEEEcCCC-CEEEEEEC---------CCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913          588 HTSCVWTLAYSCEG-SLLASGSA---------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  657 (670)
Q Consensus       588 h~~~V~sl~~s~~g-~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~  657 (670)
                      |..++..+- +|.. ...++++.         ...+.+|+...               +..+..++....+ .-++-+|+
T Consensus       217 ~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~---------------wkvv~~I~~~G~g-lFi~thP~  279 (369)
T PF02239_consen  217 HPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA---------------WKVVKTIPTQGGG-LFIKTHPD  279 (369)
T ss_dssp             EETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB---------------TSEEEEEE-SSSS---EE--TT
T ss_pred             ccccccccc-CCCcceEEeeccccceecccccCCccccchhhc---------------CeEEEEEECCCCc-ceeecCCC
Confidence            444444442 3332 22222221         11233333333               3456667776666 77888999


Q ss_pred             CcEEEEee
Q 005913          658 NLLFAAGA  665 (670)
Q Consensus       658 ~~~La~gs  665 (670)
                      ++++.+..
T Consensus       280 s~~vwvd~  287 (369)
T PF02239_consen  280 SRYVWVDT  287 (369)
T ss_dssp             -SEEEEE-
T ss_pred             CccEEeec
Confidence            99998873

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.31  E-value=3.4e-10  Score=119.41  Aligned_cols=192  Identities=18%  Similarity=0.193  Sum_probs=151.6

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE----------
Q 005913          360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF----------  429 (670)
Q Consensus       360 s~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~----------  429 (670)
                      .|-..++|....||.++||+............                         ...-++..++..|          
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p-------------------------~~~~s~t~~~~~w~L~~~~s~~k   56 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP-------------------------IASLSGTCTYTKWGLSADYSPMK   56 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeecc-------------------------chhccCcceeEEEEEEeccchHH
Confidence            34577999999999999999876432211100                         0001122222222          


Q ss_pred             ----------cCCCCEEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913          430 ----------SPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       430 ----------sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                                +.+...++-|...|.|.+|++..++....+.  +|.++|.++.|+.+-..|.+++.|+.+..|+....+.
T Consensus        57 ~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~  136 (541)
T KOG4547|consen   57 WLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI  136 (541)
T ss_pred             HHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence                      1234568888899999999999888877665  5899999999999999999999999999999999999


Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC-----CCEEEE-EECCCeE
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-----GRYMAS-GDEDGTI  571 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-----g~~l~s-g~~dg~I  571 (670)
                      ++.+.+....+.+++.+|||..+++++  +.|.+||+.+++.+..|.+|.++|+++.|--+     |.++.+ ...+..|
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i  214 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI  214 (541)
T ss_pred             eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence            999999999999999999999999986  68999999999999999999999999999876     666655 4455667


Q ss_pred             EEEeCCC
Q 005913          572 MMWDLAS  578 (670)
Q Consensus       572 ~iwDl~~  578 (670)
                      .+|-...
T Consensus       215 ~~w~v~~  221 (541)
T KOG4547|consen  215 TVWVVEK  221 (541)
T ss_pred             eEEEEEc
Confidence            7886654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.30  E-value=1.8e-10  Score=113.68  Aligned_cols=203  Identities=19%  Similarity=0.354  Sum_probs=152.6

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      ....+++++.++++...|.+|...|++.-+.+...-                        .+....+.+..|.+.|..+-
T Consensus        66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf------------------------nkm~~~r~~~~h~~~v~~~i  121 (404)
T KOG1409|consen   66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF------------------------NKMTFLKDYLAHQARVSAIV  121 (404)
T ss_pred             hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh------------------------hhcchhhhhhhhhcceeeEE
Confidence            346789999999999999999999999988876411                        12234556778999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC--CCCceeEEecccCC
Q 005913          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLS  506 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~--~~~~~~~~~~~~~~  506 (670)
                      |+-...++++++.|..+.---.+.+..+..|.- ..+..++.+.-.  +...|...|.+....+  ..-.++..+.+|.+
T Consensus       122 f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~  198 (404)
T KOG1409|consen  122 FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTG  198 (404)
T ss_pred             ecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCccc
Confidence            999999999999998765444444443332221 111112222111  5566666676666554  34567888999999


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      .+.+++|.|....+++|..|..|.+||+.-++- .....+|...|..+...+.-+.+.+++.||.|.+||+..
T Consensus       199 ~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  199 EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            999999999999999999999999999975443 345678999999999888889999999999999999853

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=5.3e-11  Score=132.44  Aligned_cols=195  Identities=24%  Similarity=0.313  Sum_probs=153.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE
Q 005913          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (670)
Q Consensus       357 l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L  436 (670)
                      ..+.-+...++.++.+..+-||+............                   . ....    -....-+-++++.-++
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------------------~-er~~----l~~~~~~g~s~~~~~i  148 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------------------D-ERCT----LYSSLIIGDSAEELYI  148 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCC-------------------C-ceEE----EEeEEEEeccCcEEEE
Confidence            44555678899999999999999875221110000                   0 0000    0122233456667789


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE-EecccCCCeeEEEEcC
Q 005913          437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHI  515 (670)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~-~~~~~~~~v~~v~~~p  515 (670)
                      ++|+.-+.|.+|+.........+.+|.+.|.++.|+.+|+++++.|.|+++|+|++++.+... ..-+|...|..+.|+|
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~  228 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP  228 (967)
T ss_pred             EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence            999999999999998444445689999999999999999999999999999999999987766 5668999999999999


Q ss_pred             CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       516 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      +  .+++++.|-++++|+.. +..+..+.+|.+ .|..++..++...++|++.||.+++||+..
T Consensus       229 n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  229 N--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             c--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            8  99999999999999754 555557777764 599999999999999999999999999753

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=3e-11  Score=139.91  Aligned_cols=194  Identities=20%  Similarity=0.368  Sum_probs=161.8

Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      ..+.|-..|.++.-+|...+-++|+.||.|++|....+..+.+++. .+..|+.+.|+.+|..+..+..||.+.+|... 
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            3445567888999999999999999999999999999988888763 34789999999999999999999999999987 


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCC--C-cEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSS--G-ECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~--~-~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                      .++....+.|......+.|-.  ..+++++   .++.+.+||..-  + .++.  ..|.+.++++++.|..+.|++||.+
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence            667777888888888888854  5566644   568999999752  2 2333  7899999999999999999999999


Q ss_pred             CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      |.|++||++..+.++.++.         +. ...++++|+..|.++||++.....+
T Consensus      2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchh
Confidence            9999999998887766653         44 5678999999999999999886543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.28  E-value=9.7e-10  Score=106.56  Aligned_cols=233  Identities=17%  Similarity=0.217  Sum_probs=158.7

Q ss_pred             ccCEEEEEEcC---CCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCC------ccEeEEEEecCCCEEEEEECCCcEEEE
Q 005913          421 SGPVYSASFSP---LGD-FILSSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHDRTARIW  490 (670)
Q Consensus       421 ~~~V~~l~~sp---~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s~dg~v~lw  490 (670)
                      ...+..+.|..   +|. .++-+-.+|.|.++..........+.+-.      ....++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            35567777763   444 45667778999999876555444444321      124578899999999999999999976


Q ss_pred             ECCCCcee--EEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC-CCcEEEE-EecCCCCeEEEEEcC-CCCEEEE
Q 005913          491 SMDRIQPL--RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRI-FIGHRSMILSLAMSP-DGRYMAS  564 (670)
Q Consensus       491 d~~~~~~~--~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~-~~~h~~~I~~l~~sp-~g~~l~s  564 (670)
                      +...+...  ...++|.-+.....|+. +.+.+.+|+.|+.+..||+| .++.+.. .+.|...|.+|.-+| .+.+|+|
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            66554433  37788999999888874 44789999999999999999 4444433 456888899999887 5789999


Q ss_pred             EECCCeEEEEeCC-CCeeeEEeeCCCcceEEEEEcCC--CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccc
Q 005913          565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCE--GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT  641 (670)
Q Consensus       565 g~~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl~~s~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  641 (670)
                      |+.|-.|++||.+ .++++..-. -.+.|+.+.++|.  +.+|+++-.+ -.+|-++..+.....          ..+..
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~----------~~~~s  296 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQ----------IVLPS  296 (339)
T ss_pred             eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccchh----------eeeec
Confidence            9999999999998 566665432 3488999999994  3344444443 466777665432100          11233


Q ss_pred             cCCCCCCeEEEEEecCCcEEEEee
Q 005913          642 LPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       642 ~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      ...|.+-.+.-.|.....+||+++
T Consensus       297 ~~~hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  297 DKIHDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             cccccceeeccccccccceeeeee
Confidence            344444455555533334555544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=1.1e-09  Score=114.06  Aligned_cols=269  Identities=16%  Similarity=0.220  Sum_probs=189.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      =+-+.|||.|.||++--.-| |.+|-=..                            ......+ .| ..|.-+.|||+.
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~----------------------------f~r~~RF-~H-p~Vq~idfSP~E  261 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGES----------------------------FDRIQRF-YH-PGVQFIDFSPNE  261 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCcc----------------------------HHHHHhc-cC-CCceeeecCCcc
Confidence            47789999999999875554 77885321                            0011111 24 357889999999


Q ss_pred             CEEEEEeC-----------CCeEEEEeCCCCceeEEeeC--CCccEeE-EEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          434 DFILSSSA-----------DTTIRLWSTKLNANLVCYKG--HNYPVWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       434 ~~L~s~s~-----------Dg~I~lwd~~~~~~~~~~~~--h~~~V~~-l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      +||+|=|.           ...++|||+.+|.....+..  ....+|. +.||.|+.|+|.-.. .+|.||+.....++.
T Consensus       262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld  340 (698)
T KOG2314|consen  262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD  340 (698)
T ss_pred             ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec
Confidence            99998653           25799999999998877766  3444554 589999999998776 579999887654444


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEE-----cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE--------
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGS-----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--------  566 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~--------  566 (670)
                      .-.-..+.|....|+|.++.||.=+     .-..+.+..+.+++.+++..-+.-.-..+.|-.+|.+|+.--        
T Consensus       341 ~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~  420 (698)
T KOG2314|consen  341 KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV  420 (698)
T ss_pred             ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence            3344557788999999999888632     224677888888888877666655555677888899887632        


Q ss_pred             --CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC---CcEEEEeCCCCccccccccccCCcccccccc
Q 005913          567 --EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT  641 (670)
Q Consensus       567 --~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  641 (670)
                        .-..+.|+.++....-...-.-...|...+|-|.|+.+++-+..   .++.+|.+.+..           ..+.++..
T Consensus       421 ~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-----------~~~~lVk~  489 (698)
T KOG2314|consen  421 KGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-----------KKPSLVKE  489 (698)
T ss_pred             cceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------Cchhhhhh
Confidence              11235566655443322223355678999999999987776643   578899887522           23456777


Q ss_pred             cCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          642 LPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       642 ~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      ++.  ...+.+.|+|.|+++++|+.-
T Consensus       490 ~dk--~~~N~vfwsPkG~fvvva~l~  513 (698)
T KOG2314|consen  490 LDK--KFANTVFWSPKGRFVVVAALV  513 (698)
T ss_pred             hcc--cccceEEEcCCCcEEEEEEec
Confidence            765  467899999999999988754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.26  E-value=2.2e-10  Score=113.01  Aligned_cols=247  Identities=16%  Similarity=0.278  Sum_probs=163.1

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEeeCCC------------ccEeEEEEecCC--CEEEE
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----NLVCYKGHN------------YPVWDVQFNPQG--HYFAS  480 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-----~~~~~~~h~------------~~V~~l~~sp~g--~~l~s  480 (670)
                      ...-|.++.|...|.+|++|..+|.|.++.-....     ....++.|.            ..|..+.|.+++  ..|+.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            44678899999999999999999999999654322     223344443            457889999854  46888


Q ss_pred             EECCCcEEEEECCCCc-----------------------------------eeEEe-cccCCCeeEEEEcCCCCEEEEEE
Q 005913          481 SSHDRTARIWSMDRIQ-----------------------------------PLRIM-AGHLSDVDCVRWHINCNYIATGS  524 (670)
Q Consensus       481 ~s~dg~v~lwd~~~~~-----------------------------------~~~~~-~~~~~~v~~v~~~p~~~~l~tgs  524 (670)
                      .+.|.+|++|.+....                                   |.+.+ ..|...|+++.++.|+..++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            8899999999874211                                   11222 2577789999999999888877 


Q ss_pred             cCCcEEEEECCC-CcEEEE--EecCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCeee------EE-----
Q 005913          525 SDKTVRLWDVSS-GECVRI--FIGHR-----SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCV------TP-----  584 (670)
Q Consensus       525 ~dg~I~iwd~~~-~~~~~~--~~~h~-----~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~------~~-----  584 (670)
                      .|=.|-+|++.- .++...  +..+.     .-|++..|+|. .+.++-.+..|+|++-|++....-      ..     
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            577899999863 233222  22222     34889999994 567777888999999999843211      10     


Q ss_pred             -----eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC-CCCeEEEEEecCC
Q 005913          585 -----LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRN  658 (670)
Q Consensus       585 -----~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~fs~~~  658 (670)
                           +..--..|..+.|+++|+++++-.. -+|++||+..............-.+..+-..+... --.-+.++|+.++
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                 0111246788999999999987643 58999999765443222111000000001111111 1123578899999


Q ss_pred             cEEEEeeCCC
Q 005913          659 LLFAAGALSK  668 (670)
Q Consensus       659 ~~La~gs~dg  668 (670)
                      ..+.+|++..
T Consensus       342 ~~v~TGsy~n  351 (433)
T KOG1354|consen  342 SYVMTGSYNN  351 (433)
T ss_pred             ceEecccccc
Confidence            9999998754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.25  E-value=5.7e-10  Score=110.20  Aligned_cols=246  Identities=17%  Similarity=0.282  Sum_probs=182.7

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +.++.+.|+....-|...-+.+.+.|.++|||--....+                          ........-..++++
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q--------------------------~wpsI~~~mP~~~~~   73 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ--------------------------YWPSIYHYMPSPCSA   73 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc--------------------------cCchhhhhCCCCceE
Confidence            345566677777777777889999999999997443111                          011122234578999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCC----CCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTK----LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~----~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                      +++.++...|+.|-..|++.-+.+.    .....+.+..|...|..+-|+-....+++.+.|..+.---.+.+..+..+.
T Consensus        74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~  153 (404)
T KOG1409|consen   74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN  153 (404)
T ss_pred             eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE
Confidence            9999999999999999999988654    344566778899999999999999999999999876554455444332211


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC--CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~--~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      - ...-.++.+.-.  +...|...|.|.+..+  ..-..+.++.+|.+++++++|.|..+.|++|..|..+.+||+.-.+
T Consensus       154 ~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  154 F-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             e-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence            0 011111222111  5566767777766544  3456788899999999999999999999999999999999997554


Q ss_pred             -eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          581 -CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       581 -~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                       ....+.+|...|..++.-+--+.+++++.||.|.+|+.+..
T Consensus       231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence             34567789999999998888889999999999999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.24  E-value=5.4e-10  Score=108.30  Aligned_cols=246  Identities=17%  Similarity=0.195  Sum_probs=165.2

Q ss_pred             CCEEEEEEc---CCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          352 NGLNCASIS---QDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       352 ~~V~~l~fs---~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      ..+..+.|+   .+|. .++.+-.+|.|.++.............                      +....-......++
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~----------------------ls~~ki~~~~~lsl  127 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG----------------------LSSKKISVVEALSL  127 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc----------------------cchhhhhheeeeEE
Confidence            456666665   2455 566677788999988664211110000                      00000001134678


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC-ceeEE-ec
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRI-MA  502 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~-~~~~~-~~  502 (670)
                      .|++.+..++++-.+|.+.+-+......  ++..+.|..++|-..|+. +.+.+.+||.|+.+..||++-. +.+.. ..
T Consensus       128 D~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k  207 (339)
T KOG0280|consen  128 DISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK  207 (339)
T ss_pred             EeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence            8999999999999999998666554433  347889999999999987 5568899999999999999833 23322 44


Q ss_pred             ccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEeCCC
Q 005913          503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       503 ~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~--g~~l~sg~~dg~I~iwDl~~  578 (670)
                      .|...|.++.-+| .+.+|+||+.|-.|++||.|+ ++++..- .-.+.|..+.++|.  ++.|+++-.+| .+|-++..
T Consensus       208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~  285 (339)
T KOG0280|consen  208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD  285 (339)
T ss_pred             eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence            6888999998874 678999999999999999994 5555432 34478999999994  34455554444 56666554


Q ss_pred             C--e---eeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEE-EEeCCCC
Q 005913          579 G--R---CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVK-LWDVTTS  621 (670)
Q Consensus       579 ~--~---~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~-iwd~~~~  621 (670)
                      +  +   .......|.+-++.-.|......|+||+ .|..++ +|-.-++
T Consensus       286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            3  2   2334456777777777755556788876 566644 7754443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=3.4e-11  Score=139.47  Aligned_cols=221  Identities=15%  Similarity=0.255  Sum_probs=167.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      -..|.|+.=+|...+-++|++||.|++|.......                           .+..-......|+.+.|+
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~---------------------------v~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ---------------------------VVCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCe---------------------------EEEeeccCcchhhhhhhc
Confidence            35588888889999999999999999999764211                           111122233889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE---CCCcEEEEECCCCc-eeEEecccCC
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQ-PLRIMAGHLS  506 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s---~dg~v~lwd~~~~~-~~~~~~~~~~  506 (670)
                      .+|+.+..+..||.+.+|.+. .......+.|+....++.|-.  ..+++++   .++.+.+||..-.. .-.+-..|.+
T Consensus      2261 ~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred             ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence            999999999999999999988 667777888999999999875  5677765   56899999975321 1122278999


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      .++|+++-|....|++|+.+|.|++||++..+....+..         +. ...++++|+..|.|+||++..-..+..+.
T Consensus      2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            999999999999999999999999999998887766654         34 56799999999999999998877776654


Q ss_pred             C---CCcc--e--EEEEEcCCCCEEEEEECCCc
Q 005913          587 G---HTSC--V--WTLAYSCEGSLLASGSADCT  612 (670)
Q Consensus       587 ~---h~~~--V--~sl~~s~~g~~l~sgs~Dg~  612 (670)
                      .   |.+-  .  ..+... ..+.|.+|+.||+
T Consensus      2408 ~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2408 SEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred             hhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence            2   2211  0  112222 2346777777764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.24  E-value=2.4e-08  Score=100.27  Aligned_cols=242  Identities=11%  Similarity=0.143  Sum_probs=169.0

Q ss_pred             eecCccCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCC--CceeE--EeeCCCccEeEEEEecCCCEEEEEE-CCCcEE
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKL--NANLV--CYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR  488 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s~D---g~I~lwd~~~--~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~  488 (670)
                      +..+.+.++-++|+|++++|.++..+   |.|.-|.++.  +....  .......+-+.++++++|++++++. ..|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            34566788899999999999888654   6777777764  33221  1112233447899999999998886 457899


Q ss_pred             EEECCC-CceeE--EecccCCC----------eeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEE---ecCCCCeE
Q 005913          489 IWSMDR-IQPLR--IMAGHLSD----------VDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIF---IGHRSMIL  551 (670)
Q Consensus       489 lwd~~~-~~~~~--~~~~~~~~----------v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~---~~h~~~I~  551 (670)
                      ++-++. +....  ....|.+.          +.+..+.|++++|++..- --.|.+|++..|+....-   ......-+
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            998854 33221  12234444          788999999999998763 246999999877653221   13345578


Q ss_pred             EEEEcCCCCEEEEEE-CCCeEEEEeCCCC-eeeEEeeC---------CCcceEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 005913          552 SLAMSPDGRYMASGD-EDGTIMMWDLASG-RCVTPLMG---------HTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVT  619 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~-~dg~I~iwDl~~~-~~~~~~~~---------h~~~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~  619 (670)
                      .|.|+|+|++.++.+ -+++|.+|..... ..+..++.         -......+..++||++|.++.. ...|.+|.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            999999999888755 6899999998873 22333321         1235667889999999988753 3578888887


Q ss_pred             CCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .....           +..+...++....-..+.|++.|.+|+++..++.
T Consensus       275 ~~~g~-----------L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd  313 (346)
T COG2706         275 PDGGK-----------LELVGITPTEGQFPRDFNINPSGRFLIAANQKSD  313 (346)
T ss_pred             CCCCE-----------EEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence            65422           3445566666666788999999999999887753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=4.1e-08  Score=98.57  Aligned_cols=252  Identities=12%  Similarity=0.188  Sum_probs=169.5

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      .....+..+-++|+|++++|.++-.   +|.|.-|.++....                        .............+
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G------------------------~Lt~ln~~~~~g~~   90 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG------------------------RLTFLNRQTLPGSP   90 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC------------------------eEEEeeccccCCCC
Confidence            3445567889999999999988754   57788888774210                        01111111111223


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcee---EEeeCCCcc----------EeEEEEecCCCEEEEEEC-CCcEE
Q 005913          424 VYSASFSPLGDFILSSSA-DTTIRLWSTKLNANL---VCYKGHNYP----------VWDVQFNPQGHYFASSSH-DRTAR  488 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~~~~~~---~~~~~h~~~----------V~~l~~sp~g~~l~s~s~-dg~v~  488 (670)
                      -+.+++++++++|+++.. .|.|.++-++....+   .....|.++          +....+.|+++++++.+- -..|.
T Consensus        91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~  170 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence            378999999999998864 588999988653322   122224444          888999999999998863 24799


Q ss_pred             EEECCCCceeEEe---cccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCC-cEEEEEec---------CCCCeEEEE
Q 005913          489 IWSMDRIQPLRIM---AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG-ECVRIFIG---------HRSMILSLA  554 (670)
Q Consensus       489 lwd~~~~~~~~~~---~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~-~~~~~~~~---------h~~~I~~l~  554 (670)
                      +|+++.++....-   .......+.|.|||++++..+.+ -+++|.+|..... ..+..++.         .......|.
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            9999866533211   13445678999999999887765 4889999998763 22222221         123567899


Q ss_pred             EcCCCCEEEEEEC-CCeEEEEeCCC--Cee--eEEeeCCCcceEEEEEcCCCCEEEEEECC-CcEEEEeCCCCc
Q 005913          555 MSPDGRYMASGDE-DGTIMMWDLAS--GRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTTST  622 (670)
Q Consensus       555 ~sp~g~~l~sg~~-dg~I~iwDl~~--~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-g~I~iwd~~~~~  622 (670)
                      ++|||++|+++.. ...|.+|.+..  ++.  +.....+......+.|++.|++|+++..+ ..|.+|.++..+
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            9999999998752 34677877653  332  22223344456889999999999999866 469999887654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.21  E-value=1.6e-08  Score=118.91  Aligned_cols=291  Identities=15%  Similarity=0.175  Sum_probs=186.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ..+.|.++.+-++...++.+..+|.|.+.......                         ..........-...|.+++|
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-------------------------~~~~~E~VG~vd~GI~a~~W  128 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP-------------------------DEDEIEIVGSVDSGILAASW  128 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC-------------------------CCceeEEEEEEcCcEEEEEE
Confidence            34679999999999999999999999998433200                         01122222334578999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCC-------------CC----------ceeEEeeC------------------------C
Q 005913          430 SPLGDFILSSSADTTIRLWSTK-------------LN----------ANLVCYKG------------------------H  462 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~-------------~~----------~~~~~~~~------------------------h  462 (670)
                      |||+..|+..+.++++.+-+-.             -+          +.-..|+|                        +
T Consensus       129 SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~  208 (928)
T PF04762_consen  129 SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW  208 (928)
T ss_pred             CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc
Confidence            9999999999999988876421             00          00011111                        1


Q ss_pred             CccEeEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc---CCcEEEEE
Q 005913          463 NYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWD  533 (670)
Q Consensus       463 ~~~V~~l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~---dg~I~iwd  533 (670)
                      ...-..|+|-.||.|||+.+-      -+.+++|+-+ |.....-..-.+--.+++|.|.|++||+...   ...|.+|.
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence            123456889999999999874      2689999976 4433333322333457899999999998765   34566676


Q ss_pred             CCCCcEEEEEe----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee--eEEeeC-CCcceEEEEEcCC-CCEEE
Q 005913          534 VSSGECVRIFI----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--VTPLMG-HTSCVWTLAYSCE-GSLLA  605 (670)
Q Consensus       534 ~~~~~~~~~~~----~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~--~~~~~~-h~~~V~sl~~s~~-g~~l~  605 (670)
                       ++|-.-..|.    .....|..+.|++|+..||....|. |.+|-..+..-  -+.+.. ....+..+.|+|. ...|.
T Consensus       288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence             4554444443    3356799999999999999987665 99999887642  223332 2234555999995 45677


Q ss_pred             EEECCCcEEEEeC----CCCcccc--------cccc--------c-cCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913          606 SGSADCTVKLWDV----TTSTKVL--------KTEE--------K-SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       606 sgs~Dg~I~iwd~----~~~~~~~--------~~~~--------~-~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g  664 (670)
                      ..+.+|.+.++++    ..+....        ....        . .....+.....+ ....+|.+++|++++..+|+-
T Consensus       366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl  444 (928)
T PF04762_consen  366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVL  444 (928)
T ss_pred             EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEE
Confidence            7777777766554    2221110        0000        0 001111111222 235789999999999878887


Q ss_pred             eCCCC
Q 005913          665 ALSKT  669 (670)
Q Consensus       665 s~dgs  669 (670)
                      ..||+
T Consensus       445 ~~d~~  449 (928)
T PF04762_consen  445 TSDGS  449 (928)
T ss_pred             ECCCC
Confidence            77763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=3e-11  Score=125.10  Aligned_cols=205  Identities=22%  Similarity=0.384  Sum_probs=156.6

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                      ....+.||...|..++--.+.+.+++++.|.+|++|+++.       ..+..+|..|..+|.++.|-.+.++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            4456789999999998888888999999999999999863       34678899999999999999998888765  78


Q ss_pred             cEEEEECCCCceeEEec-----ccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEEe-----cCCCCeEEEE
Q 005913          486 TARIWSMDRIQPLRIMA-----GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFI-----GHRSMILSLA  554 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~-----~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~-----~h~~~I~~l~  554 (670)
                      .+.+||.-.+.++..+.     +..+.|.|+. +-+...+++| +...+|+++|.+.+..+..++     +..+-+.+++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            99999987666665332     1223344442 1234445554 778999999999887665554     3345689999


Q ss_pred             EcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE-EeCCCC
Q 005913          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL-WDVTTS  621 (670)
Q Consensus       555 ~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i-wd~~~~  621 (670)
                      ..|.|++++++-.+|.|.+.|.++|+.+..++...-....++ .|..+.|+....|.++.| |....+
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            999999999999999999999999999887765544444443 356677888888888888 765443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.19  E-value=9.7e-10  Score=107.01  Aligned_cols=245  Identities=20%  Similarity=0.349  Sum_probs=169.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC----------
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH----------  420 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----------  420 (670)
                      ...|+++.|...|.|||+|...|.|.+|.-..... +.                      .+-.+.+++|          
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-ce----------------------ykf~teFQshe~EFDYLkSl   82 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-CE----------------------YKFFTEFQSHELEFDYLKSL   82 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccc-cc----------------------hhhhhhhcccccchhhhhhc
Confidence            35699999999999999999999999998654220 00                      0111222233          


Q ss_pred             --ccCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCc------------------------------------------
Q 005913          421 --SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNA------------------------------------------  454 (670)
Q Consensus       421 --~~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~------------------------------------------  454 (670)
                        ...|..+.|..++.  .++..+.|.+|++|.+....                                          
T Consensus        83 eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~  162 (460)
T COG5170          83 EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK  162 (460)
T ss_pred             cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec
Confidence              24577888876553  56667789999999864220                                          


Q ss_pred             eeEEe-eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecccC-----CCeeEEEEcCC-CCEEEEEE
Q 005913          455 NLVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHL-----SDVDCVRWHIN-CNYIATGS  524 (670)
Q Consensus       455 ~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~---~~~~~~~~-----~~v~~v~~~p~-~~~l~tgs  524 (670)
                      +.+.+ ..|...|.++.|..+...++++ .|=.|.+|+++-...   +.-++.|.     ..|++..|||. ++.+...+
T Consensus       163 p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs  241 (460)
T COG5170         163 PCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS  241 (460)
T ss_pred             cceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence            00112 3578889999999998888776 457899999864322   22223332     34788899985 56777888


Q ss_pred             cCCcEEEEECCCCcEE----------------EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeC
Q 005913          525 SDKTVRLWDVSSGECV----------------RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG  587 (670)
Q Consensus       525 ~dg~I~iwd~~~~~~~----------------~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~  587 (670)
                      +.|.|++-|++.....                .-|.+-...|..+.|+++|+++++-+. -++++||.+.. .++.++.-
T Consensus       242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence            9999999999843211                112233456889999999999988764 57999999864 56777644


Q ss_pred             C------------CcceE---EEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          588 H------------TSCVW---TLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       588 h------------~~~V~---sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      |            ...|.   .+.||.|...+.+|+..+..-||-+.+
T Consensus       321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence            4            22343   478898999999999888888887543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=4e-09  Score=110.60  Aligned_cols=231  Identities=17%  Similarity=0.241  Sum_probs=159.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC
Q 005913          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (670)
Q Consensus       355 ~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (670)
                      ++..||.|..+.|-- ..+.+.+|++....                             .....-|...|+.+.+||.+.
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~-----------------------------~~~~kl~~~~i~~f~lSpgp~  178 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFK-----------------------------TIQHKLSVSGITMLSLSPGPE  178 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCcc-----------------------------ceeeeeeccceeeEEecCCCC
Confidence            799999998765533 45689999976411                             111223567888899998643


Q ss_pred             --EEEE-----EeCCCeEEEEeCCCCce--eEEeeC-CCccEeEEEEecCCCEEE-EEE--C---------CCcEEEEEC
Q 005913          435 --FILS-----SSADTTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFA-SSS--H---------DRTARIWSM  492 (670)
Q Consensus       435 --~L~s-----~s~Dg~I~lwd~~~~~~--~~~~~~-h~~~V~~l~~sp~g~~l~-s~s--~---------dg~v~lwd~  492 (670)
                        .+|+     .+.-+.|+||.......  ....++ ....-..+.|++-|.-|+ .++  -         ..++++.++
T Consensus       179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t  258 (566)
T KOG2315|consen  179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT  258 (566)
T ss_pred             CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence              4442     45567899998762211  111111 112223577887665432 222  2         347888888


Q ss_pred             CCCceeEEecccCCCeeEEEEcCCCCEEEE--EEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC---
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---  567 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t--gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~---  567 (670)
                      +.......+ ...++|.++.|+|+|+-+++  |-.-..+.|+|++ ++++..+  ..++-.++-|+|.|++|+.+|-   
T Consensus       259 ~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL  334 (566)
T KOG2315|consen  259 QGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNL  334 (566)
T ss_pred             cCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCC
Confidence            843333333 35689999999999987665  6677899999986 4455443  4577788999999999998774   


Q ss_pred             CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC------CCcEEEEeCCCC
Q 005913          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA------DCTVKLWDVTTS  621 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~------Dg~I~iwd~~~~  621 (670)
                      .|.|-|||..+.+++..+.....  +-+.|+|||++++|++.      |+.++||++...
T Consensus       335 ~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  335 PGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             CCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            48999999999888888765543  45899999999999874      688999998754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.19  E-value=1.9e-08  Score=120.47  Aligned_cols=252  Identities=14%  Similarity=0.184  Sum_probs=163.1

Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          355 NCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       355 ~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      ..++++++ +.++++-+.++.|++||...........  .+.....        ++..     -.++-....++++.+++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~--~g~~G~~--------dG~~-----~~a~f~~P~GIavd~~g  635 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS--TGEEGLR--------DGSF-----EDATFNRPQGLAYNAKK  635 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc--CCCcCCC--------CCch-----hccccCCCcEEEEeCCC
Confidence            35688874 6677777788899999976421110000  0000000        0000     01122345789999988


Q ss_pred             CEEEEEe-CCCeEEEEeCCCCceeEEeeCC-----------------CccEeEEEEec-CCCEEEEEECCCcEEEEECCC
Q 005913          434 DFILSSS-ADTTIRLWSTKLNANLVCYKGH-----------------NYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       434 ~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-----------------~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      +.|+++. ..+.|+.+|+.++. +.++.+-                 -..-++++++| ++..+++.+.++.|++||..+
T Consensus       636 n~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~  714 (1057)
T PLN02919        636 NLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD  714 (1057)
T ss_pred             CEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence            8666554 45789999987654 3322110                 11246899999 566677777889999999877


Q ss_pred             CceeEEecc---------------cCCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEEec-------------
Q 005913          495 IQPLRIMAG---------------HLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFIG-------------  545 (670)
Q Consensus       495 ~~~~~~~~~---------------~~~~v~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~-------------  545 (670)
                      +... .+.+               .......++++|+++.|+ +.+.++.|++||+.++.......+             
T Consensus       715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~  793 (1057)
T PLN02919        715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD  793 (1057)
T ss_pred             CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence            6432 2221               112356799999998555 455678999999987653221100             


Q ss_pred             C--------CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-------------CCCcceEEEEEcCCCCEE
Q 005913          546 H--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-------------GHTSCVWTLAYSCEGSLL  604 (670)
Q Consensus       546 h--------~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-------------~h~~~V~sl~~s~~g~~l  604 (670)
                      +        -.....++++++|..+++-..++.|++||..++.......             +.-.....++++++|+++
T Consensus       794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly  873 (1057)
T PLN02919        794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF  873 (1057)
T ss_pred             CCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence            0        0124588999999988888899999999998776543221             111246789999999999


Q ss_pred             EEEECCCcEEEEeCCCCcc
Q 005913          605 ASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       605 ~sgs~Dg~I~iwd~~~~~~  623 (670)
                      ++-+.+++|++||+.++..
T Consensus       874 VaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        874 VADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEECCCCEEEEEECCCCcc
Confidence            9999999999999988654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.16  E-value=5e-08  Score=114.69  Aligned_cols=316  Identities=16%  Similarity=0.130  Sum_probs=183.6

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ccccccCCCCC-----CCCCCCccccCC-CCCc---------
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGE-----NDTTPREDIIGP-NGRK---------  411 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~---------  411 (670)
                      .-..+|.|++||||+.+||..+.+|+|.+-+.+-..  .........+.     ......+..+.. .++.         
T Consensus       118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            346789999999999999999999999887543110  00000000000     000001111100 0000         


Q ss_pred             ---cceeeeecCccCEEEEEEcCCCCEEEEEeC---C---CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE
Q 005913          412 ---RSYTLYQGHSGPVYSASFSPLGDFILSSSA---D---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS  482 (670)
Q Consensus       412 ---~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~---D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s  482 (670)
                         .....+. +...-..|+|-.||.++|+.+.   .   ..+|||+-+ |....+...-.+--.+++|.|.|+.+|+.-
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q  275 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ  275 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence               0011122 4446678999999999998764   2   579999976 443333332233334689999999999886


Q ss_pred             C---CCcEEEEECCC---CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE--EEEe-cCCCCeEEE
Q 005913          483 H---DRTARIWSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV--RIFI-GHRSMILSL  553 (670)
Q Consensus       483 ~---dg~v~lwd~~~---~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~--~~~~-~h~~~I~~l  553 (670)
                      .   ...|.+|.-+.   ++-.-.+......|..+.|++++..||....|. |.+|-..+-.--  +.+. .....+..+
T Consensus       276 ~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~  354 (928)
T PF04762_consen  276 RLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFV  354 (928)
T ss_pred             EcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence            4   34666776432   221111223456799999999999999987665 999998765421  1222 223345569


Q ss_pred             EEcCC-CCEEEEEECCCeEEEEeCC----CC--------eeeEEee-----------------------CCCcceEEEEE
Q 005913          554 AMSPD-GRYMASGDEDGTIMMWDLA----SG--------RCVTPLM-----------------------GHTSCVWTLAY  597 (670)
Q Consensus       554 ~~sp~-g~~l~sg~~dg~I~iwDl~----~~--------~~~~~~~-----------------------~h~~~V~sl~~  597 (670)
                      .|+|. ...|...+.+|.+..+++.    .+        ..+..+.                       ....+|.+++|
T Consensus       355 ~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf  434 (928)
T PF04762_consen  355 KWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAF  434 (928)
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEE
Confidence            99994 4456666666766655432    11        0111110                       12467999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCcccccccccc-CCccc--ccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS-GTNRL--RSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       598 s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      ++++..+++-..||+|.+|............... ..-..  ............+..+.|..++.+++....+
T Consensus       435 ~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (928)
T PF04762_consen  435 SPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD  507 (928)
T ss_pred             eCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence            9999889999999999999976543221000000 00000  0011122335568889998888777766554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.15  E-value=7.5e-09  Score=107.32  Aligned_cols=283  Identities=14%  Similarity=0.164  Sum_probs=186.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ..-++..++|||.|.+|++.... .|.+|.-....                            .+..  -....|+.+.|
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~----------------------------~l~~--~~~~~V~~~~f   79 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA----------------------------KLVR--FRHPDVKYLDF   79 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchh----------------------------heee--eecCCceeccc
Confidence            34568899999999999988544 48888754211                            1111  12356899999


Q ss_pred             cCCCCEEEEEeCCC---------------eEEEEeCCCCceeEEeeCCCcc--Ee-EEEEecCCCEEEEEECCCcEEEEE
Q 005913          430 SPLGDFILSSSADT---------------TIRLWSTKLNANLVCYKGHNYP--VW-DVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       430 sp~~~~L~s~s~Dg---------------~I~lwd~~~~~~~~~~~~h~~~--V~-~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      +|.+.+|.+-+..+               .+.+||+.++..+..+.+...+  .| -+.|+-+..|.|-. ....+.+++
T Consensus        80 SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e  158 (561)
T COG5354          80 SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHE  158 (561)
T ss_pred             CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEe
Confidence            99999999876433               4999999999999988887766  77 78999988887665 335799999


Q ss_pred             CC-CCc--eeEEecccCCCeeEEEEcCCCC--EEEE-----EEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE
Q 005913          492 MD-RIQ--PLRIMAGHLSDVDCVRWHINCN--YIAT-----GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY  561 (670)
Q Consensus       492 ~~-~~~--~~~~~~~~~~~v~~v~~~p~~~--~l~t-----gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~  561 (670)
                      +. +..  +...+  ....|....|+|.++  .|+.     ++.++++++|.+..+..+.+..--...-..+.|++.|.+
T Consensus       159 ~t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~  236 (561)
T COG5354         159 ITDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKY  236 (561)
T ss_pred             cCCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCce
Confidence            62 211  11111  135677888888643  3443     557889999999877766554333334457889999998


Q ss_pred             EEEEE-----------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccc
Q 005913          562 MASGD-----------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTE  628 (670)
Q Consensus       562 l~sg~-----------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~  628 (670)
                      |+.-.           ....++++++....+-.. ....++|...+|.|.++.+++.+  .+-.+.++|+...-...-.+
T Consensus       237 ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe  315 (561)
T COG5354         237 LLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE  315 (561)
T ss_pred             EEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccceEEecCC
Confidence            76532           235688888874333322 25678999999999888766554  67889999988762221111


Q ss_pred             ccc------CCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          629 EKS------GTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       629 ~~~------~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .+.      ...+.-+++-+....+.  ...|+|-|+++++|..+|+
T Consensus       316 ~~rNT~~fsp~~r~il~agF~nl~gn--i~i~~~~~rf~~~~~~~~~  360 (561)
T COG5354         316 QKRNTIFFSPHERYILFAGFDNLQGN--IEIFDPAGRFKVAGAFNGL  360 (561)
T ss_pred             cccccccccCcccEEEEecCCccccc--eEEeccCCceEEEEEeecC
Confidence            110      01112223334333333  3567888888888776653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=2.6e-10  Score=118.18  Aligned_cols=297  Identities=15%  Similarity=0.194  Sum_probs=200.3

Q ss_pred             CCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee
Q 005913          338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY  417 (670)
Q Consensus       338 ~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (670)
                      .+..+.+..|.+|.+.|..++--.+.+-+++++.|.+|++|.+...+...                     +......++
T Consensus       722 n~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~---------------------~tsaCQfTY  780 (1034)
T KOG4190|consen  722 NFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI---------------------GTSACQFTY  780 (1034)
T ss_pred             ccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc---------------------ccceeeeEh
Confidence            44556666788999999998887788889999999999999987532111                     112244567


Q ss_pred             ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEec--CCCEEEEE-ECCCcEEEEEC
Q 005913          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNP--QGHYFASS-SHDRTARIWSM  492 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp--~g~~l~s~-s~dg~v~lwd~  492 (670)
                      ..|..+|.++-|-.+.++++++  ||.|++||.--++.+....  ...+.+..+..-+  +...+..| +...+|+++|.
T Consensus       781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da  858 (1034)
T KOG4190|consen  781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA  858 (1034)
T ss_pred             hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec
Confidence            8999999999999888888776  7889999987666554221  1122233333333  34444444 67889999999


Q ss_pred             CCCceeEEec-----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          493 DRIQPLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       493 ~~~~~~~~~~-----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      +.......++     +...-+.|++..+.|++++++-++|+|.+.|.++|+.+..+.........++ .|..+.|+....
T Consensus       859 Rsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal  937 (1034)
T KOG4190|consen  859 RSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL  937 (1034)
T ss_pred             ccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc
Confidence            8876554443     4456689999999999999999999999999999999988776655555554 466678888888


Q ss_pred             CCeEEE-EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCC
Q 005913          568 DGTIMM-WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS  646 (670)
Q Consensus       568 dg~I~i-wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (670)
                      |.++.+ |....|....+.+....+..-+.  .-|.-|+++...+.+.||.-.........     .   ..+ ......
T Consensus       938 dHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYad~a~~ha~st-----i---tKi-R~d~f~ 1006 (1034)
T KOG4190|consen  938 DHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYADSAELHAEST-----I---TKI-RPDEFP 1006 (1034)
T ss_pred             cceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEecchhhhhhhh-----h---ccc-cccccC
Confidence            888988 98777766555543332221111  13556777777777788753221111000     0   000 112334


Q ss_pred             CCeEEEEEecCCcEEEEeeCCCC
Q 005913          647 TPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       647 ~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      +..++++.-|-|.-+.+|...|.
T Consensus      1007 G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 1007 GTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred             CccceeeeccccchhhccCCCCc
Confidence            45677777777777777776654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.11  E-value=1.6e-08  Score=96.92  Aligned_cols=232  Identities=10%  Similarity=-0.011  Sum_probs=156.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC-CCEEEEEe
Q 005913          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSS  440 (670)
Q Consensus       362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~L~s~s  440 (670)
                      ...+||.|+..|...+|...+...                           .......|...|+-+.=..+ .--+..++
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~---------------------------h~~~cd~snn~v~~~~r~cd~~~~~~i~s  135 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDG---------------------------HLYQCDVSNNDVTLVKRYCDLKFPLNIAS  135 (344)
T ss_pred             cccEEEeccccceeeeecccCccc---------------------------ceeeecccccchhhhhhhcccccceeecc
Confidence            567899999999999999875211                           11122223232221111111 22466788


Q ss_pred             CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc--eeE-EecccCCCeeEEEEcCCC
Q 005913          441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLR-IMAGHLSDVDCVRWHINC  517 (670)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~--~~~-~~~~~~~~v~~v~~~p~~  517 (670)
                      .|.++++.++..+..........-.+.++.+++++++.++.+....|..|.++...  .++ ........-.+..|+.+.
T Consensus       136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~  215 (344)
T KOG4532|consen  136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND  215 (344)
T ss_pred             CCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence            89999999887654433332222348899999999999999999999999987532  223 223344556788999999


Q ss_pred             CEEEEEEcCCcEEEEECCCCcEEEE-----EecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEeCCCCeeeEEee----
Q 005913          518 NYIATGSSDKTVRLWDVSSGECVRI-----FIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPLM----  586 (670)
Q Consensus       518 ~~l~tgs~dg~I~iwd~~~~~~~~~-----~~~h~~~I~~l~~sp~g~--~l~sg~~dg~I~iwDl~~~~~~~~~~----  586 (670)
                      ..+|+++.||++.|||++.......     -..|.+.+..+.|++-|.  +|+..-.-+.+.+.|+++++....+.    
T Consensus       216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d  295 (344)
T KOG4532|consen  216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD  295 (344)
T ss_pred             ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence            9999999999999999996543322     235889999999998664  45555566889999999987655443    


Q ss_pred             ---CCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          587 ---GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       587 ---~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                         .|. ..|..-.|+.++.-+.+.+.+ .+.=|++.+.
T Consensus       296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             ccccccccccccccccCCCcccccccch-hhheeecccc
Confidence               233 337777888777666666554 3445665543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.09  E-value=1.4e-07  Score=98.27  Aligned_cols=241  Identities=12%  Similarity=0.050  Sum_probs=150.8

Q ss_pred             EcCCCCEEEEEeC----------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          359 ISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       359 fs~d~~~La~g~~----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      +|||++.|.++..          +..|.+||..+...........                   .-+..  .......++
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~-------------------~p~~~--~~~~~~~~~  111 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE-------------------GPRFL--VGTYPWMTS  111 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC-------------------Cchhh--ccCccceEE
Confidence            9999999887765          7889999998744322111000                   00000  112234678


Q ss_pred             EcCCCCEEEEEe-C-CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE-----Ee
Q 005913          429 FSPLGDFILSSS-A-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-----IM  501 (670)
Q Consensus       429 ~sp~~~~L~s~s-~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~-----~~  501 (670)
                      ++|||++|++.. . +..|.++|+.+++.+..+.... ...-...+++.  +.+-|.||......++......     .+
T Consensus       112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf  188 (352)
T TIGR02658       112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVF  188 (352)
T ss_pred             ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc--cEEEeecCceEEEEecCCCceEEeeeeee
Confidence            999999998776 3 6899999999999888776532 22222222222  2233455555554443211111     11


Q ss_pred             cccCCCe-eEEEEcC-CCCEEEEEEcCCcEEEEECCCC-----cEEEEEec-------CCCCeEEEEEcCCCCEEEEEE-
Q 005913          502 AGHLSDV-DCVRWHI-NCNYIATGSSDKTVRLWDVSSG-----ECVRIFIG-------HRSMILSLAMSPDGRYMASGD-  566 (670)
Q Consensus       502 ~~~~~~v-~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~-------h~~~I~~l~~sp~g~~l~sg~-  566 (670)
                      .+-...+ ..-.|.+ +|.++++... |+|.+.|+...     .....+..       ..+.+.-++++|+|+.++... 
T Consensus       189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~  267 (352)
T TIGR02658       189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD  267 (352)
T ss_pred             cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence            1100000 0013445 8888888776 99999996433     33333221       123345599999999888743 


Q ss_pred             ---------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCcccc
Q 005913          567 ---------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVL  625 (670)
Q Consensus       567 ---------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~~  625 (670)
                               ..+.|.++|..+++.+..+.. ...+++++++||++ +|++.. .++.|.|+|..+.+...
T Consensus       268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             CCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence                     225799999999999988864 34789999999999 777666 67889999998876543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.07  E-value=7.4e-08  Score=99.02  Aligned_cols=190  Identities=17%  Similarity=0.213  Sum_probs=143.1

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC------CC-----ccEeEEE-Eec-CCCEEEEEECCCcEEEEECCC
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG------HN-----YPVWDVQ-FNP-QGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~------h~-----~~V~~l~-~sp-~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      ..+.||+.++-. ..|.|++||..+......--+      ..     .+..-+. |++ +|.+++..|. |.+.+.+...
T Consensus       273 ~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~  350 (668)
T COG4946         273 NANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD  350 (668)
T ss_pred             ccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence            345677776643 457799999886543221111      00     1111111 444 7888888887 7788887766


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEcCC-cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                      +..+.  .+|...|.-..+..+++-++.|..|| .+-++|..+++..+ +...-+.|.++..+|+|++++.+.....|.+
T Consensus       351 ~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         351 GYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             CeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence            54443  35677788888888888999999999 89999998887655 4556688999999999999999999999999


Q ss_pred             EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC----cEEEEeCCCCc
Q 005913          574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC----TVKLWDVTTST  622 (670)
Q Consensus       574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg----~I~iwd~~~~~  622 (670)
                      .|+.+|.....-+...+-|+.++|||+++++|-+--+|    .|+++|+..++
T Consensus       428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             EEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            99999987655555668899999999999999887665    68999998864

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.06  E-value=5.3e-08  Score=101.14  Aligned_cols=257  Identities=13%  Similarity=0.142  Sum_probs=167.1

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCc---------------EEEEECCCCCccccccCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSS---------------LKVWDMAKLGQQAVSSGLQG  394 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~---------------I~Iwdl~~~~~~~~~~~~~~  394 (670)
                      ..+.+|.......+ .++.  +..|.-+.|||.+++|.+=+..+.               +.+||..+.           
T Consensus        53 ~~V~~~~g~~~~~l-~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg-----------  118 (561)
T COG5354          53 AGVECWGGPSKAKL-VRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG-----------  118 (561)
T ss_pred             cceEEccccchhhe-eeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc-----------
Confidence            34556654443322 2222  346999999999999998655444               667776542           


Q ss_pred             CCCCCCCccccCCCCCccceeeeecCccC--EE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEE
Q 005913          395 ENDTTPREDIIGPNGRKRSYTLYQGHSGP--VY-SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQ  470 (670)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~  470 (670)
                                       ..+..+.+...+  .+ -+.|+-+..++|-... ..++|+++...-...-+.. ....|....
T Consensus       119 -----------------~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr~~gi~dFs  180 (561)
T COG5354         119 -----------------MIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLRPVGILDFS  180 (561)
T ss_pred             -----------------eeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhccccceeeEE
Confidence                             222222232222  33 5778888888775433 4699999722211111111 134588889


Q ss_pred             EecCC--CEEEE-----EECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-----------cCCcEEEE
Q 005913          471 FNPQG--HYFAS-----SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-----------SDKTVRLW  532 (670)
Q Consensus       471 ~sp~g--~~l~s-----~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-----------~dg~I~iw  532 (670)
                      |+|.+  ..|+.     .+.++++++|.+-.+..+..-.-....-..+.|++.|+++++-.           ....++|+
T Consensus       181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~  260 (561)
T COG5354         181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL  260 (561)
T ss_pred             ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence            99953  33443     35788999999987777665444444445788999999887632           12468888


Q ss_pred             ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE--ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913          533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASG--DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (670)
Q Consensus       533 d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg--~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D  610 (670)
                      +++ +..++......++|...+|+|.++.+++.  -.+-.+.++|++.. ...  ......=..+.|||.+++++.++-|
T Consensus       261 ~~~-e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp~~r~il~agF~  336 (561)
T COG5354         261 RIT-ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSPHERYILFAGFD  336 (561)
T ss_pred             eec-ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE--ecCCcccccccccCcccEEEEecCC
Confidence            887 44444444668999999999998877654  47888999999876 332  2334444668899999999998876


Q ss_pred             ---CcEEEEeCCCCc
Q 005913          611 ---CTVKLWDVTTST  622 (670)
Q Consensus       611 ---g~I~iwd~~~~~  622 (670)
                         |.|-+||.....
T Consensus       337 nl~gni~i~~~~~rf  351 (561)
T COG5354         337 NLQGNIEIFDPAGRF  351 (561)
T ss_pred             ccccceEEeccCCce
Confidence               689999987654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=5.6e-08  Score=101.73  Aligned_cols=275  Identities=11%  Similarity=0.130  Sum_probs=175.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          351 HNGLNCASISQDGSLVAGGFS-----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~-----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      |.+|.-+.|||+.+||++-+.           ...+.|||+.++......                         ....+
T Consensus       249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF-------------------------~~~~~  303 (698)
T KOG2314|consen  249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF-------------------------PVIKS  303 (698)
T ss_pred             CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce-------------------------eccCC
Confidence            456999999999999998542           256899999874332211                         11111


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-----CCcEEEEECCC
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-----DRTARIWSMDR  494 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-----dg~v~lwd~~~  494 (670)
                      ....-.-+.||.|++++|--..+ +|.||+......+-.-.-.-..|....|+|.+..||--..     -..+.+..+-+
T Consensus       304 ~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs  382 (698)
T KOG2314|consen  304 PYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS  382 (698)
T ss_pred             CccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc
Confidence            22222346899999999977665 6999998764433222223456888999999888776432     23566777777


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEc----------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSS----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~----------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      ++.++...-+.-.=..+-|-.+|.||+.--.          -..+.|+.++.....-....-...|...+|-|.|..+++
T Consensus       383 ~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v  462 (698)
T KOG2314|consen  383 KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV  462 (698)
T ss_pred             cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence            7766665544332334566678888876321          113455555544332222334567889999999998776


Q ss_pred             EEC---CCeEEEEeCCC-C---eeeEEeeCCCcceEEEEEcCCCCEEEEEE---CCCcEEEEeCCCCccccccccccCCc
Q 005913          565 GDE---DGTIMMWDLAS-G---RCVTPLMGHTSCVWTLAYSCEGSLLASGS---ADCTVKLWDVTTSTKVLKTEEKSGTN  634 (670)
Q Consensus       565 g~~---dg~I~iwDl~~-~---~~~~~~~~h~~~V~sl~~s~~g~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~  634 (670)
                      -+.   ..++.+|-+.+ .   +.+..+..  ...+.+.|+|.|++++.++   ..|.+.++|.......          
T Consensus       463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k----------  530 (698)
T KOG2314|consen  463 ISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK----------  530 (698)
T ss_pred             EEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhh----------
Confidence            543   35788888763 2   23333332  4567899999999988764   5688999998752210          


Q ss_pred             ccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          635 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       635 ~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                          ....+.| ...+.+.|.|.|+++++++..+
T Consensus       531 ----~~~~~eh-~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  531 ----DTASPEH-FAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             ----hccCccc-cccccceECCCCCEEEEeeehh
Confidence                0111222 2467789999999999988653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.03  E-value=2.9e-09  Score=114.23  Aligned_cols=244  Identities=20%  Similarity=0.301  Sum_probs=173.1

Q ss_pred             CCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          351 HNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       351 ~~~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      .-.|-.+.|||.  -.+-++.+....-.||++....                         ....-..+.||+..|+.+.
T Consensus        67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------------------------~~aIef~lhghsraitd~n  121 (1081)
T KOG0309|consen   67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------------------------SNAIEFVLHGHSRAITDIN  121 (1081)
T ss_pred             cchhcceecccCCCCceeEEecCcchhhhhhhhcCC-------------------------ccceEEEEecCccceeccc
Confidence            345788889875  4455666666667789986411                         1223456789999999999


Q ss_pred             EcCCCC-EEEEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecccC
Q 005913          429 FSPLGD-FILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHL  505 (670)
Q Consensus       429 ~sp~~~-~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~  505 (670)
                      |+|... .+++++.|..|..||+++... +..+..-......+.|+-....+.+.++.+.|++||++.+ .++..+++|.
T Consensus       122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v  201 (1081)
T KOG0309|consen  122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV  201 (1081)
T ss_pred             cCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc
Confidence            999765 788999999999999987543 3344444445677999886666777778889999999865 5778889999


Q ss_pred             CCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEeCC---
Q 005913          506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLA---  577 (670)
Q Consensus       506 ~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~g~--~l~sg~~dg~I~iwDl~---  577 (670)
                      ..|+.++|+. ....+.+++.||+|..||.....  ..+. .....+|..-.+-|-|.  ++.-.-.+..+.+++.+   
T Consensus       202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d  280 (1081)
T KOG0309|consen  202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD  280 (1081)
T ss_pred             eeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchh
Confidence            9999999874 34568889999999999986432  2222 23445677777777443  33222222244444433   


Q ss_pred             ------C-CeeeEEeeCCCcceEEEEEcCCC----------CEEEEEECCCcEEEEeCCC
Q 005913          578 ------S-GRCVTPLMGHTSCVWTLAYSCEG----------SLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       578 ------~-~~~~~~~~~h~~~V~sl~~s~~g----------~~l~sgs~Dg~I~iwd~~~  620 (670)
                            + .+++.++.||...|....|-..+          -.|+|-+.|.++++|-+.+
T Consensus       281 ~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  281 LEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                  2 36788999999988777664322          2799999999999999865

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=3.2e-07  Score=89.71  Aligned_cols=230  Identities=13%  Similarity=0.149  Sum_probs=136.6

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE
Q 005913          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (670)
Q Consensus       357 l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L  436 (670)
                      ++.++||++||+- +|..|.|-.....-...                       .......+...-.-..++||||+.+|
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si-----------------------~~kcqVpkD~~PQWRkl~WSpD~tlL   58 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSI-----------------------IGKCQVPKDPNPQWRKLAWSPDCTLL   58 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchhe-----------------------eEEEecCCCCCchheEEEECCCCcEE
Confidence            5678899999987 88888887755311100                       01111222233345678999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEeeC-------CCccEeEEEEecC------CCEEEEEECCCcEEEEECCC-----Ccee
Q 005913          437 LSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQ------GHYFASSSHDRTARIWSMDR-----IQPL  498 (670)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~l~~sp~------g~~l~s~s~dg~v~lwd~~~-----~~~~  498 (670)
                      |.+...|+|+++|+.. ..+..+..       -...|.++.|.+.      ...|++-..+|.++-|-+..     .+..
T Consensus        59 a~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~  137 (282)
T PF15492_consen   59 AYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQEN  137 (282)
T ss_pred             EEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceee
Confidence            9999999999999985 33333332       1356777777652      22466667778777766422     2222


Q ss_pred             EEec---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE---cCCCCEEEEEECCC---
Q 005913          499 RIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM---SPDGRYMASGDEDG---  569 (670)
Q Consensus       499 ~~~~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~---sp~g~~l~sg~~dg---  569 (670)
                      ..+.   .+...|.++.|+|..+.|++|+....      ..+..    ......+++-..   +|.... ++...|+   
T Consensus       138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s----~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~  206 (282)
T PF15492_consen  138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMS----KASSCGLTAWRILSDSPYYKQ-VTSSEDDITA  206 (282)
T ss_pred             EEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCccc----cccccCceEEEEcCCCCcEEE-ccccCccccc
Confidence            3332   24668999999999999988775322      00000    011111111111   111111 1111111   


Q ss_pred             ---eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          570 ---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       570 ---~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                         +..+|.+-+.+...........|..|..||||..||+...+|.|.+|++.+-.
T Consensus       207 ~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  207 SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             cccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence               12334433332222222345789999999999999999999999999998754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.01  E-value=1.3e-07  Score=97.14  Aligned_cols=172  Identities=16%  Similarity=0.194  Sum_probs=136.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC-cEEEEECCCCceeEEecccCCCeeE
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-TARIWSMDRIQPLRIMAGHLSDVDC  510 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-~v~lwd~~~~~~~~~~~~~~~~v~~  510 (670)
                      +|++++..|. |...+.+...+-.+.  -+|...|.-..+..++.-++.|..|| .+-++|.++++..+ +....+.|.+
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEE
Confidence            5788888886 567776655443333  34666788888888888999999999 99999999876544 5557789999


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC----eEEEEeCCCCeeeEEee
Q 005913          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRCVTPLM  586 (670)
Q Consensus       511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg----~I~iwDl~~~~~~~~~~  586 (670)
                      +..+|+|++++++.....|.++|+.+|+....-....+-|+.++|||+++++|-+--+|    .|+++|+..++..... 
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-  485 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-  485 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-
Confidence            99999999999999999999999999998777677778899999999999999887665    5999999988765433 


Q ss_pred             CCCcceEEEEEcCCCCEEEEEE
Q 005913          587 GHTSCVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       587 ~h~~~V~sl~~s~~g~~l~sgs  608 (670)
                      ..++-=.+-+|.|++++|.--+
T Consensus       486 T~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         486 TPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CCcccccCcccCCCCcEEEEEe
Confidence            2333335678899999776554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=1.8e-07  Score=101.34  Aligned_cols=191  Identities=11%  Similarity=-0.015  Sum_probs=122.5

Q ss_pred             CEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          353 GLNCASISQDGSL-VAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       353 ~V~~l~fs~d~~~-La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      .+....|||||+. ++..+.+   ..|.++|+.+.                             ..+.+....+.+....
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-----------------------------~~~~lt~~~g~~~~~~  239 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG-----------------------------KKEKIASSQGMLVVSD  239 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC-----------------------------cEEEEecCCCcEEeeE
Confidence            6778999999985 6644333   45777776541                             1122223445566778


Q ss_pred             EcCCCCEEEEE-eC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-C--cEEEEECCCCceeEEec
Q 005913          429 FSPLGDFILSS-SA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R--TARIWSMDRIQPLRIMA  502 (670)
Q Consensus       429 ~sp~~~~L~s~-s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-g--~v~lwd~~~~~~~~~~~  502 (670)
                      |+|||+.|+.. +.  +..|.++++.++... .+..+........|+|||+.++..+.. +  .|.++|+.+++..+...
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~  318 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF  318 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence            99999877643 33  356888888776543 333333333456899999987777632 3  68888888777655433


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcC---------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---Ce
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT  570 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~d---------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g~  570 (670)
                      .. ..  ...|+|+|++|+..+..         ..|.+.|+.++.... +... .......|+|||+.|+..+.+   ..
T Consensus       319 ~g-~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~  393 (419)
T PRK04043        319 HG-KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA  393 (419)
T ss_pred             CC-Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence            21 11  24899999999876653         368888988886543 3332 233468899999988765533   23


Q ss_pred             EEEEeCCC
Q 005913          571 IMMWDLAS  578 (670)
Q Consensus       571 I~iwDl~~  578 (670)
                      +.+.++..
T Consensus       394 L~~~~l~g  401 (419)
T PRK04043        394 LGIIRLNY  401 (419)
T ss_pred             EEEEecCC
Confidence            66667643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=2.4e-07  Score=100.40  Aligned_cols=202  Identities=11%  Similarity=0.024  Sum_probs=129.5

Q ss_pred             CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE-EEEEEC---CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC
Q 005913          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSH---DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN  518 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~---dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  518 (670)
                      ..|.+-|.+... .+.+.... .+..-.|+|+|+. ++..+.   +..|.++|+.+++...... ..+...+..|+|||+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            355555555333 33333333 7778999999985 555443   3568889998887655543 445566788999998


Q ss_pred             EEEEEEc---CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEeCCCCeeeEEeeCCCcce
Q 005913          519 YIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--TIMMWDLASGRCVTPLMGHTSCV  592 (670)
Q Consensus       519 ~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-g--~I~iwDl~~~~~~~~~~~h~~~V  592 (670)
                      .++....   +..|+++|+.++...+ +..+.+......|+|||+.|+..+.. |  .|+++|+.+++....... ..  
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--  321 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--  321 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence            8775432   3578888988877544 44444434566899999987776533 2  688889987765332221 11  


Q ss_pred             EEEEEcCCCCEEEEEECC---------CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913          593 WTLAYSCEGSLLASGSAD---------CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       593 ~sl~~s~~g~~l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~  663 (670)
                      ....|||+|+.|+..+..         ..|.+.|+.++..             ..+..   . .......|+|||+.++.
T Consensus       322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------------~~LT~---~-~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------------RRLTA---N-GVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------------EECCC---C-CCcCCeEECCCCCEEEE
Confidence            234899999988877654         2567777766532             11111   1 12335789999998887


Q ss_pred             eeCCC
Q 005913          664 GALSK  668 (670)
Q Consensus       664 gs~dg  668 (670)
                      .+..+
T Consensus       385 ~~~~~  389 (419)
T PRK04043        385 IKYLG  389 (419)
T ss_pred             EEccC
Confidence            76554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.98  E-value=1.8e-06  Score=87.11  Aligned_cols=217  Identities=15%  Similarity=0.139  Sum_probs=147.1

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc-CCC
Q 005913          356 CASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-PLG  433 (670)
Q Consensus       356 ~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~  433 (670)
                      ++.|.+ ++.++++....+.|..|+..+.                             ....+... . ..++++. ++ 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~-----------------------------~~~~~~~~-~-~~G~~~~~~~-   51 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG-----------------------------EVEVIDLP-G-PNGMAFDRPD-   51 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT-----------------------------EEEEEESS-S-EEEEEEECTT-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC-----------------------------eEEEEecC-C-CceEEEEccC-
Confidence            578887 7888888888999999997641                             11111111 2 6777887 55 


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeC-----CCccEeEEEEecCCCEEEEEECC--------CcEEEEECCCCceeEE
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD--------RTARIWSMDRIQPLRI  500 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~l~~sp~g~~l~s~s~d--------g~v~lwd~~~~~~~~~  500 (670)
                      ..|+.+...+ +.++|..+++.......     ......++++.|+|...++....        |.+..++.. ++. ..
T Consensus        52 g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~  128 (246)
T PF08450_consen   52 GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TV  128 (246)
T ss_dssp             SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EE
T ss_pred             CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EE
Confidence            5555555554 56669888765443332     34668899999999977776643        457777776 443 33


Q ss_pred             ecccCCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcE----EEEE---ecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913          501 MAGHLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGEC----VRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~----~~~~---~~h~~~I~~l~~sp~g~~l~sg~~dg~I~  572 (670)
                      +.......+.++|+|+++.|+ +-+..+.|..+++.....    .+.+   ....+....+++..+|++.++....+.|.
T Consensus       129 ~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~  208 (246)
T PF08450_consen  129 VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV  208 (246)
T ss_dssp             EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred             EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence            344456788999999999776 455678899999863221    2223   22223478899999999888888899999


Q ss_pred             EEeCCCCeeeEEeeCCCcceEEEEE-cCCCCEEEEEE
Q 005913          573 MWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASGS  608 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~~~V~sl~~-s~~g~~l~sgs  608 (670)
                      ++|.. |+.+..+......+++++| .++.+.|+..+
T Consensus       209 ~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  209 VFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            99977 8888888766568999999 46656555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=4.9e-08  Score=104.59  Aligned_cols=245  Identities=13%  Similarity=0.118  Sum_probs=173.4

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      ++-+|...|.-+.|+.+.+.|-+...+|.|.||-+-......                          --.-....+.|.
T Consensus        66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E--------------------------EMiNnRnKSvV~  119 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE--------------------------EMINNRNKSVVV  119 (1189)
T ss_pred             hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH--------------------------HHhhCcCccEEE
Confidence            678899999999999999999999999999999876422100                          001112346789


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc-------e
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-------P  497 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~-------~  497 (670)
                      +++|+.+|..++..-.||.|.+=.++..+.- +.+++  .....+.|++|...++.+-..|.+.++|....-       +
T Consensus       120 SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c  197 (1189)
T KOG2041|consen  120 SMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDC  197 (1189)
T ss_pred             EEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhce
Confidence            9999999999999999999888777643321 11222  224468999999998888889999999976421       1


Q ss_pred             eE----EecccCCCeeEEEEc--------CCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          498 LR----IMAGHLSDVDCVRWH--------INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       498 ~~----~~~~~~~~v~~v~~~--------p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      ..    .+......|..+.|.        |+...++++..+|.+.+..-.+......+. ..-.|..+.|+|+|..|+.+
T Consensus       198 ~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvc  276 (1189)
T KOG2041|consen  198 EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVC  276 (1189)
T ss_pred             EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEc
Confidence            11    112222235556664        577899999999998887544433332332 23668899999999999998


Q ss_pred             ECC---------CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          566 DED---------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       566 ~~d---------g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      |.+         +.|.+|. .-|+.+.+++.....|++++|-..|-.++.+ .|+.|.+=+++..
T Consensus       277 G~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~  339 (1189)
T KOG2041|consen  277 GNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPE  339 (1189)
T ss_pred             cCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeeccc
Confidence            854         3566665 4677888888888999999998776666554 4677777666543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=4.1e-10  Score=122.59  Aligned_cols=272  Identities=15%  Similarity=0.213  Sum_probs=180.7

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +|..+...-+|++||-+.++|++|+..|.|++|++.++                            .......+|..+|+
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG----------------------------~~e~s~ncH~SavT 1147 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG----------------------------SMEESVNCHQSAVT 1147 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc----------------------------cccccccccccccc
Confidence            56778889999999999999999999999999998762                            22233567999999


Q ss_pred             EEEEcCCCCEEEEEeCCC--eEEEEeCCC-CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-
Q 005913          426 SASFSPLGDFILSSSADT--TIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-  501 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg--~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-  501 (670)
                      -+.-+.+|..+++.+.-.  -..+|++.. +...+.|.+    -.++.|+.....-+.|+....+.+||+.++.++..+ 
T Consensus      1148 ~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1148 LVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred             cccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence            999999999877655433  477999864 344444543    346888876655566666678999999998877653 


Q ss_pred             c---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          502 A---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       502 ~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      .   +....-++..|+|+...++-   ||  .+||++..+.++.|......+ .=.|+|+|..++..+.     |||+++
T Consensus      1224 t~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred             CcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHH
Confidence            2   22233478899999887774   55  489999988887775444222 3359999999888764     999999


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CC--CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEE
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS--AD--CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF  654 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f  654 (670)
                      .+.+.....-..  ..+.|+..|++++..-  .|  .-|..=+++.  +.......-.......+.+++.. .+|..++-
T Consensus      1293 F~lLh~VP~Ldq--c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~--p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct 1367 (1516)
T KOG1832|consen 1293 FKLLHSVPSLDQ--CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKH--PLFSSFRTFDAIDYSDIATIPVD-RCLLDLCT 1367 (1516)
T ss_pred             HHHHhcCccccc--eEEEeccCccchhhhhhhhhhhhhhccccccc--chhhhhccccccccccceeeecc-cchhhhhc
Confidence            888766543332  4678888887655432  00  0011111111  00000000111122345555443 46777787


Q ss_pred             ecCCcEEEEee
Q 005913          655 SRRNLLFAAGA  665 (670)
Q Consensus       655 s~~~~~La~gs  665 (670)
                      +|...+|++--
T Consensus      1368 ~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1368 EPTDSFLGVIE 1378 (1516)
T ss_pred             CCccceEEEEe
Confidence            88777777643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.95  E-value=8.5e-08  Score=103.88  Aligned_cols=237  Identities=18%  Similarity=0.131  Sum_probs=177.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      -.++.|+|.| ++|.| ..+.|.+-|...                            .+.+..+.-|...|+.+.|.|-.
T Consensus        18 ~~A~Dw~~~G-LiAyg-shslV~VVDs~s----------------------------~q~iqsie~h~s~V~~VrWap~~   67 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYG-SHSLVSVVDSRS----------------------------LQLIQSIELHQSAVTSVRWAPAP   67 (1062)
T ss_pred             ccccccCccc-eEEEe-cCceEEEEehhh----------------------------hhhhhccccCccceeEEEeccCC
Confidence            6788899876 67777 455677777553                            23445566788999999998731


Q ss_pred             ------------CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec---CC-CEEEEEECCCcEEEEECCCCce
Q 005913          434 ------------DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP---QG-HYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       434 ------------~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp---~g-~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                                  -.|+++...|.|.+||......+..+..|..++.+++|-+   +. ..++.-....++.+|+.++|+.
T Consensus        68 ~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   68 SPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             CchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence                        2467778889999999999988888999999999999987   33 4566666778999999999999


Q ss_pred             eEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC-------CCcEEEEEecCCC------------C--------
Q 005913          498 LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-------SGECVRIFIGHRS------------M--------  549 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~------------~--------  549 (670)
                      +...........|+.+.| +.+.+..-+..|.+.+.+.-       .|+.+++-..|..            .        
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa  227 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA  227 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence            888776667778899988 55666666677877777653       2344443333322            0        


Q ss_pred             -----eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC--EEEEEECCCcEEEEeCCC
Q 005913          550 -----ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTT  620 (670)
Q Consensus       550 -----I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~--~l~sgs~Dg~I~iwd~~~  620 (670)
                           .-.++|+|.-+.++.......+.++|+.-..++....-..+.+.-+.|-|+++  .|+++-.||.+.||--+.
T Consensus       228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence                 11357788777666666778899999998888888776677777778877654  799999999999997655

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.94  E-value=1.8e-06  Score=90.07  Aligned_cols=217  Identities=14%  Similarity=0.148  Sum_probs=135.6

Q ss_pred             EcCCCCEEEEEeC----------CCeEEEEeCCCCceeEEeeCCC-------ccEeEEEEecCCCEEEEEE-C-CCcEEE
Q 005913          429 FSPLGDFILSSSA----------DTTIRLWSTKLNANLVCYKGHN-------YPVWDVQFNPQGHYFASSS-H-DRTARI  489 (670)
Q Consensus       429 ~sp~~~~L~s~s~----------Dg~I~lwd~~~~~~~~~~~~h~-------~~V~~l~~sp~g~~l~s~s-~-dg~v~l  489 (670)
                      +|||++.|+++..          +..|.+||+.+.+.+..+....       ..-..++++|+|+++++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998876655          7899999999999887776422       2234789999999988776 3 689999


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEE----EEEecCCCCeE-EEEEcC-CCCEE
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECV----RIFIGHRSMIL-SLAMSP-DGRYM  562 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~----~~~~~h~~~I~-~l~~sp-~g~~l  562 (670)
                      +|+.+++.+..+.-.. ...-+..+.+.+++.  +.||......+.+ |+..    ..|.+...++. .-.|++ +|+++
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence            9999999888776422 222222222322222  2345444433322 2211    11111011110 014455 88888


Q ss_pred             EEEECCCeEEEEeCCCC-----eeeEEeeC-------CCcceEEEEEcCCCCEEEEEE----------CCCcEEEEeCCC
Q 005913          563 ASGDEDGTIMMWDLASG-----RCVTPLMG-------HTSCVWTLAYSCEGSLLASGS----------ADCTVKLWDVTT  620 (670)
Q Consensus       563 ~sg~~dg~I~iwDl~~~-----~~~~~~~~-------h~~~V~sl~~s~~g~~l~sgs----------~Dg~I~iwd~~~  620 (670)
                      +.... |.|.+.|+...     .....+..       ..+.+.-++++++++.++...          ..+.|.++|..+
T Consensus       210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t  288 (352)
T TIGR02658       210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT  288 (352)
T ss_pred             EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence            77776 99999996443     22222211       223444599999999888743          124799999887


Q ss_pred             CccccccccccCCcccccccccCCCCCCeEEEEEecCCc-EEEEee
Q 005913          621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGA  665 (670)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs  665 (670)
                      .+.               +..+.. ...+..++|+||++ +|.+..
T Consensus       289 ~kv---------------i~~i~v-G~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       289 GKR---------------LRKIEL-GHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             CeE---------------EEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence            654               333333 34799999999999 776555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.94  E-value=5.8e-07  Score=96.82  Aligned_cols=182  Identities=14%  Similarity=0.047  Sum_probs=121.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEe-----EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC-
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-----DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-  506 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-----~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~-  506 (670)
                      +..++.++.+|.|+.||..+++.+..+......+.     +...  .+..++.+..++.+..+|..+++.+........ 
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            45677778899999999999988766654322111     1111  234677888889999999998877654321100 


Q ss_pred             ---C------e-eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          507 ---D------V-DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       507 ---~------v-~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                         .      + .+..+  .+..+++++.+|.++.||..+|+.+..... . ......  ..+..++.++.+|.|..+|.
T Consensus       223 g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~  296 (377)
T TIGR03300       223 GRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDR  296 (377)
T ss_pred             CCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEEC
Confidence               0      0 11111  356788888999999999999988766542 1 112222  24678888889999999999


Q ss_pred             CCCeeeEEeeCCCc-ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          577 ASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       577 ~~~~~~~~~~~h~~-~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      .+|+.+........ ...+...  .+..|++++.+|.|+++|..+++..
T Consensus       297 ~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       297 RSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             CCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            99987765532211 2222222  4668999999999999998887643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.94  E-value=1.7e-08  Score=98.46  Aligned_cols=247  Identities=16%  Similarity=0.289  Sum_probs=157.1

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----eEEeeCCC------------ccEeEEEEecCC--CEEEE
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----LVCYKGHN------------YPVWDVQFNPQG--HYFAS  480 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-----~~~~~~h~------------~~V~~l~~sp~g--~~l~s  480 (670)
                      ....|+++.|...|.+|++|...|.|.+|.-.....     ...+++|.            ..|..+.|..++  ..|+.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            346789999999999999999999999997653321     22355554            347788887754  35778


Q ss_pred             EECCCcEEEEECCCCc------------------------------------------eeEEe-cccCCCeeEEEEcCCC
Q 005913          481 SSHDRTARIWSMDRIQ------------------------------------------PLRIM-AGHLSDVDCVRWHINC  517 (670)
Q Consensus       481 ~s~dg~v~lwd~~~~~------------------------------------------~~~~~-~~~~~~v~~v~~~p~~  517 (670)
                      .+.|++|++|.+....                                          +.+.. ..|...++++.|+.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8899999999874210                                          11222 3566678889998888


Q ss_pred             CEEEEEEcCCcEEEEECCCCc-E--EEEEecCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCee------e
Q 005913          518 NYIATGSSDKTVRLWDVSSGE-C--VRIFIGHR-----SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC------V  582 (670)
Q Consensus       518 ~~l~tgs~dg~I~iwd~~~~~-~--~~~~~~h~-----~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~------~  582 (670)
                      ..++++ .|=.|.+|++.-.. +  +.-+..|.     .-|++..|+|. ...+.-.+..|.|++-|++....      +
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            777766 57789999886322 2  22233343     34888999995 44566677889999999984321      1


Q ss_pred             EE----------eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC-CCCeEE
Q 005913          583 TP----------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYS  651 (670)
Q Consensus       583 ~~----------~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~  651 (670)
                      ..          +.+-...|..+.|+++|+++++-+. -+|+|||+...........-....+..+-..+... --.-+.
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence            11          1122356888999999999887654 48999999886643322110000000000011100 011245


Q ss_pred             EEEecCCcEEEEeeCCC
Q 005913          652 LQFSRRNLLFAAGALSK  668 (670)
Q Consensus       652 l~fs~~~~~La~gs~dg  668 (670)
                      +.||.+...+.+|++..
T Consensus       343 isfSgd~~~v~sgsy~N  359 (460)
T COG5170         343 ISFSGDDKHVLSGSYSN  359 (460)
T ss_pred             EEecCCccccccccccc
Confidence            67787777777777654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.92  E-value=2.7e-06  Score=85.76  Aligned_cols=215  Identities=15%  Similarity=0.132  Sum_probs=141.0

Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEe-cCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913          426 SASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       426 ~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      ++.|.+ ++.++++-...+.|+.|+..++.... +....  ...+.+. +++ .++.+... .+.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence            567888 66666777778999999998765543 33222  6677777 565 55555554 456669888755444432


Q ss_pred             -----cCCCeeEEEEcCCCCEEEEEEcC--------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE-EEECCC
Q 005913          504 -----HLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA-SGDEDG  569 (670)
Q Consensus       504 -----~~~~v~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~-sg~~dg  569 (670)
                           .....+.+++.|+|++.++....        |.|..++.. ++...... .-.....|+|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence                 34567899999999977775543        568888877 55444433 345678999999999776 556788


Q ss_pred             eEEEEeCCCCee-------eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913          570 TIMMWDLASGRC-------VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL  642 (670)
Q Consensus       570 ~I~iwDl~~~~~-------~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  642 (670)
                      .|..+|+.....       +..+....+..-.+++..+|++.++....+.|.+++-. +..               +..+
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~---------------~~~i  220 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL---------------LREI  220 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE---------------EEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE---------------EEEE
Confidence            899999863221       12222222347889999999999988889999999976 332               2222


Q ss_pred             CCCCCCeEEEEEe-cCCcEEEE
Q 005913          643 PTKSTPVYSLQFS-RRNLLFAA  663 (670)
Q Consensus       643 ~~~~~~V~~l~fs-~~~~~La~  663 (670)
                      ......+++++|. ++...|.+
T Consensus       221 ~~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  221 ELPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             E-SSSSEEEEEEESTTSSEEEE
T ss_pred             cCCCCCEEEEEEECCCCCEEEE
Confidence            2223378999995 55444433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.90  E-value=7.7e-07  Score=106.77  Aligned_cols=239  Identities=16%  Similarity=0.171  Sum_probs=151.4

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeeC--C------------CccEeEEEEecCCCEEEEEE-CCCcEE
Q 005913          425 YSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKG--H------------NYPVWDVQFNPQGHYFASSS-HDRTAR  488 (670)
Q Consensus       425 ~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h------------~~~V~~l~~sp~g~~l~s~s-~dg~v~  488 (670)
                      ..+++++. +..+++-+.++.|++||... ..+..+.+  .            -.....+++.+++..|+++. ..+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788875 55667777888999999864 43333322  1            11247899999887666654 457899


Q ss_pred             EEECCCCceeEEeccc-----------------CCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecC----
Q 005913          489 IWSMDRIQPLRIMAGH-----------------LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGH----  546 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~-----------------~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h----  546 (670)
                      .+|+.++. +..+.+.                 ......++|+| ++..+++.+.++.|++||..++... .+.+.    
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            99987754 3333211                 12346799999 5666677777899999999877543 22211    


Q ss_pred             -----------CCCeEEEEEcCCCCEEE-EEECCCeEEEEeCCCCeeeEEee-------------CC--------CcceE
Q 005913          547 -----------RSMILSLAMSPDGRYMA-SGDEDGTIMMWDLASGRCVTPLM-------------GH--------TSCVW  593 (670)
Q Consensus       547 -----------~~~I~~l~~sp~g~~l~-sg~~dg~I~iwDl~~~~~~~~~~-------------~h--------~~~V~  593 (670)
                                 -.....|+++|+|..|+ +-+.++.|++||+.++.......             .+        -....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                       12345799999998555 55567999999998765321110             00        11245


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       594 sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      +++++++|+++++-+.+++|++||..++........  +.....--......-.....++++++|.++++-+.++
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~--G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT--GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc--CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence            889999999999999999999999877543211110  0000000001122233567899999999888766554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=2.4e-08  Score=101.04  Aligned_cols=164  Identities=21%  Similarity=0.245  Sum_probs=116.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      +..+..++.+++||++..+....++++......                        .+..... .-...-+++.|..+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~------------------------~kl~~~~-~v~~~~~ai~~~~~~  119 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG------------------------AKLLDVS-CVPKRPTAISFIRED  119 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCc------------------------ceeeeEe-ecccCcceeeeeecc
Confidence            445567888999999988888888887642210                        0111111 112233445555545


Q ss_pred             CEEEEE---eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-cccCCCee
Q 005913          434 DFILSS---SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-AGHLSDVD  509 (670)
Q Consensus       434 ~~L~s~---s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~~~~~~v~  509 (670)
                      .....+   +....+.+|+... .+....-||-..+.+++|+||+++++++..|..|++-.......+..+ .||..-|.
T Consensus       120 ~sv~v~dkagD~~~~di~s~~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS  198 (390)
T KOG3914|consen  120 TSVLVADKAGDVYSFDILSADS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS  198 (390)
T ss_pred             ceEEEEeecCCceeeeeecccc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence            544433   4455666666665 344556689999999999999999999999999999888766666554 47999999


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe
Q 005913          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI  544 (670)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~  544 (670)
                      .++.-++. .|++|+.|++|++||+++|+++..+.
T Consensus       199 ~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  199 TISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence            99987654 58999999999999999999886653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=5.1e-09  Score=103.59  Aligned_cols=153  Identities=19%  Similarity=0.305  Sum_probs=120.0

Q ss_pred             eEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-----cE
Q 005913          467 WDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----EC  539 (670)
Q Consensus       467 ~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-----~~  539 (670)
                      |.++|+-  .|.. ++.+.+..|-+-+++++... .|. ..++|.++.|+..++.++.|+.+|.|..+|++.+     .+
T Consensus       215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~  291 (425)
T KOG2695|consen  215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC  291 (425)
T ss_pred             hhhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc
Confidence            3345554  3444 55666778999999887443 333 6689999999999999999999999999999865     34


Q ss_pred             EEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCee---eEEeeCCCcceEEE--EEcCCCCEEEEEECCCcE
Q 005913          540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTSCVWTL--AYSCEGSLLASGSADCTV  613 (670)
Q Consensus       540 ~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~---~~~~~~h~~~V~sl--~~s~~g~~l~sgs~Dg~I  613 (670)
                      ...+ -|...|+++..-. ++++|++.+.+|.|.+||++.-++   +.++.+|...-.-+  -..+....++++|.|...
T Consensus       292 a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  292 AQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             eEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence            4444 4888999988776 788999999999999999997777   88888987543333  345667789999999999


Q ss_pred             EEEeCCCCcc
Q 005913          614 KLWDVTTSTK  623 (670)
Q Consensus       614 ~iwd~~~~~~  623 (670)
                      |||.++.+..
T Consensus       371 RiWsl~~ghL  380 (425)
T KOG2695|consen  371 RIWSLDSGHL  380 (425)
T ss_pred             EEEecccCce
Confidence            9999998754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.86  E-value=2.1e-08  Score=101.48  Aligned_cols=160  Identities=21%  Similarity=0.349  Sum_probs=114.1

Q ss_pred             cEeEEEEecCCCEEEEEECCCcEEEEECCCCce----eEEecccCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCC
Q 005913          465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSG  537 (670)
Q Consensus       465 ~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~----~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~  537 (670)
                      ..+.+..++.++++|++..+....++++.....    ..... -...-+++.|..+...+..+..-|   .+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            345566777888888888888777777654332    11111 112234455555555555544444   4555555444


Q ss_pred             cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913          538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLW  616 (670)
Q Consensus       538 ~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iw  616 (670)
                      .+. .+.||-..++.++|+||+++|+++..|+.|++-....-..+..+- ||+..|..++.-++ ..|++||.|++|++|
T Consensus       143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence            444 456899999999999999999999999999998887766666554 79999999998754 569999999999999


Q ss_pred             eCCCCcccccc
Q 005913          617 DVTTSTKVLKT  627 (670)
Q Consensus       617 d~~~~~~~~~~  627 (670)
                      |+.++..+...
T Consensus       221 d~~sgk~L~t~  231 (390)
T KOG3914|consen  221 DITSGKLLDTC  231 (390)
T ss_pred             ecccCCccccc
Confidence            99998876433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=1.6e-06  Score=94.33  Aligned_cols=201  Identities=12%  Similarity=0.123  Sum_probs=143.1

Q ss_pred             ecCCCCEEEEEEcCC------------CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcccee
Q 005913          348 INTHNGLNCASISQD------------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT  415 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d------------~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (670)
                      -.|...|+.+.|.|-            .-+||++...|.|.+||....                            ....
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~----------------------------s~~~  103 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA----------------------------SVIN  103 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh----------------------------hhhh
Confidence            345577999999862            235788888999999998641                            2233


Q ss_pred             eeecCccCEEEEEEcCC---C-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEE
Q 005913          416 LYQGHSGPVYSASFSPL---G-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW  490 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~---~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lw  490 (670)
                      .+..|..+|..++|-+.   . ..|++-....+|.+|+..+|+....+........|+.+.| +.+.|..-+..|.+.+.
T Consensus       104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~  183 (1062)
T KOG1912|consen  104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC  183 (1062)
T ss_pred             hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence            45667889999999763   3 4566767778999999999999988887667788899999 66777777777888877


Q ss_pred             ECCC-------CceeEEecccCC------------C-------------eeEEEEcCCCCEEEEEEcCCcEEEEECCCCc
Q 005913          491 SMDR-------IQPLRIMAGHLS------------D-------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGE  538 (670)
Q Consensus       491 d~~~-------~~~~~~~~~~~~------------~-------------v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~  538 (670)
                      +.-.       ++..++-..|..            .             ...++|+|.-+.++...-.+.+.++|++-..
T Consensus       184 ~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~  263 (1062)
T KOG1912|consen  184 KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC  263 (1062)
T ss_pred             eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc
Confidence            6532       223333333322            0             1124667776666666678889999999888


Q ss_pred             EEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEeC
Q 005913          539 CVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDL  576 (670)
Q Consensus       539 ~~~~~~~h~~~I~~l~~sp~g~--~l~sg~~dg~I~iwDl  576 (670)
                      ++....-..+.+.-+.+-|+++  .|+++..||.+.+|-.
T Consensus       264 ~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  264 CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence            8877766666666666766554  6888888888888853

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.82  E-value=4.9e-08  Score=93.36  Aligned_cols=176  Identities=22%  Similarity=0.238  Sum_probs=113.0

Q ss_pred             cCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccc
Q 005913          334 LSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS  413 (670)
Q Consensus       334 l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (670)
                      +|......-++.++..+.+.-.|-+.+--++.+++|..||.+.+++......  ...                       
T Consensus        72 ~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~--~~~-----------------------  126 (319)
T KOG4714|consen   72 LWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA--LMS-----------------------  126 (319)
T ss_pred             hhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHh--hhh-----------------------
Confidence            4444444445555555555555666666688899999999999999764110  000                       


Q ss_pred             eeeeecCccCEEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcE
Q 005913          414 YTLYQGHSGPVYSASFSPLGDFILSSS-----ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA  487 (670)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~L~s~s-----~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v  487 (670)
                       +.-..|.+. .+.+....++++.++.     .-+..+.|+++..+....-+.....|.+++-+| ..+.+++|+.||.+
T Consensus       127 -~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~  204 (319)
T KOG4714|consen  127 -RIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIV  204 (319)
T ss_pred             -hcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeE
Confidence             000011111 1122223344444432     223466777765443332222233488999999 45667888899999


Q ss_pred             EEEECCCCc-eeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCC
Q 005913          488 RIWSMDRIQ-PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS  536 (670)
Q Consensus       488 ~lwd~~~~~-~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~  536 (670)
                      -+||.++.. +...+..|..++..+-||| ++..|++++.||.+..||..+
T Consensus       205 ~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  205 GLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            999998764 4456678999999999998 567899999999999999765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.81  E-value=2.4e-06  Score=85.49  Aligned_cols=187  Identities=17%  Similarity=0.142  Sum_probs=127.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-cccCC---C
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-AGHLS---D  507 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~~~~~---~  507 (670)
                      ++..+++++.++.|+.||..+++.+..+.. ..++.... ...+..+++++.++.++.+|..+++.+... .....   .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            467788888999999999999998877765 22222222 224556777778889999999999998874 32211   1


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC----------eEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~----------I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                      .........++.++++..++.|..+|+++|+.+.........          +.+-....++ .++.++.+|.+..+|+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~  191 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA  191 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence            122233334888999989999999999999998887664422          1122222344 77777777864444999


Q ss_pred             CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       578 ~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      +++.+....  ...+..+ ...++..|+.++.++.|.+||+.+++..
T Consensus       192 tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  192 TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            999664332  2233332 3457778888889999999999998653

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.78  E-value=4.3e-08  Score=105.46  Aligned_cols=202  Identities=25%  Similarity=0.365  Sum_probs=150.3

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC--CccEeEEEEecCC--CEEEEEECCCcEEEEECCC--
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQG--HYFASSSHDRTARIWSMDR--  494 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~g--~~l~s~s~dg~v~lwd~~~--  494 (670)
                      .+++..+..+|.|+-++.++.-| +.+.|+...-..-.+-.|  .-.|-++.|+|..  .+-++........+|++..  
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46788899999999999998877 667777654332222223  3346778888843  3455555556778898753  


Q ss_pred             -CceeEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          495 -IQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       495 -~~~~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                       ......+.+|...|+.+.|+|.. ..+++++.|-.+..||+++.. ++..+..-...-+.++|+-....+.+.+....|
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence             23345567999999999999865 478889999999999999754 455555555667889998855555555666789


Q ss_pred             EEEeCCCC-eeeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCcc
Q 005913          572 MMWDLASG-RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       572 ~iwDl~~~-~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      ++||++.| .++..+++|...|+++.|.. ....+.+++.||+|++||......
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence            99999976 57788889999999999875 345688999999999999987654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=4.2e-09  Score=114.94  Aligned_cols=197  Identities=16%  Similarity=0.236  Sum_probs=151.5

Q ss_pred             ccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC--cEE
Q 005913          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TAR  488 (670)
Q Consensus       411 ~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg--~v~  488 (670)
                      .+.++.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.....+.+|+.+|+-+.-+.+|...++.+.-.  -..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            345667788999999999999999999999999999999999999999999999999999999999877765433  467


Q ss_pred             EEECCC-CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE-ec---CCCCeEEEEEcCCCCEEE
Q 005913          489 IWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IG---HRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       489 lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~---h~~~I~~l~~sp~g~~l~  563 (670)
                      +|++.. +.+...|.    .-.|+.|+.....-+.|+......+||++++..+.++ .+   ....-.+..|||+..+++
T Consensus      1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            898754 44444444    3467888876666666777778999999999877663 22   122336788999988776


Q ss_pred             EEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       564 sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                         .||  .+||.+..+.+..|...+.. -.-.|+|+|..++.-+.     |||+.+..
T Consensus      1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred             ---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHH
Confidence               455  58999988777776544422 12369999998888764     99998753

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.75  E-value=5.9e-07  Score=86.39  Aligned_cols=202  Identities=16%  Similarity=0.114  Sum_probs=131.7

Q ss_pred             CCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEec-----CCCEEEEEECCCcEEEEECCCCce-eEEecccCCCeeEEE
Q 005913          441 ADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQP-LRIMAGHLSDVDCVR  512 (670)
Q Consensus       441 ~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp-----~g~~l~s~s~dg~v~lwd~~~~~~-~~~~~~~~~~v~~v~  512 (670)
                      ....|-+|++-+..  .+..+.+       +.|.|     ...+|+.||..|...+|...+.+. ......|...|+-+.
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~  122 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK  122 (344)
T ss_pred             ceeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence            34457777766544  3333332       44444     456899999999999999885443 233334444333221


Q ss_pred             E-cCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEE-e-eCC
Q 005913          513 W-HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTP-L-MGH  588 (670)
Q Consensus       513 ~-~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~-~-~~h  588 (670)
                      - .-..--+..++.|.++++.++.-+..-.......-.+.++++++|++++++.+....|..|.+... ..+.. . ...
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t  202 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT  202 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence            1 112234666778888888887654333222211123788999999999999999999999988643 22222 2 223


Q ss_pred             CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913          589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  659 (670)
Q Consensus       589 ~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~  659 (670)
                      +..-.+.+|+.....+|++..||++.|||++....+..          ..-.+-+.|.+.|..+.|++-|.
T Consensus       203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~----------~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA----------EISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             CCCceeeeeccCcceEEEEecCCcEEEEEecccccchh----------hhcccCCCCCCceEEEEecCCCc
Confidence            34457889999999999999999999999987543221          12234567889999999998663

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.75  E-value=1.4e-06  Score=93.76  Aligned_cols=175  Identities=15%  Similarity=0.069  Sum_probs=118.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCCc-------cEeEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ..++.++.+|.+..+|..+++.+........       ....+.-+|  .+..+++++.+|.++.||..+++.+......
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~  270 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS  270 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC
Confidence            4677788889999999988876544321100       000111111  3557888889999999999999877655421


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                        ......  ..+..+++++.+|.++.+|..+|+.+........ ...+...  .+..|++++.+|.|+++|..+|+.+.
T Consensus       271 --~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~  344 (377)
T TIGR03300       271 --SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA  344 (377)
T ss_pred             --CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence              112222  3567888888999999999999988765532211 2222222  36789999999999999999999998


Q ss_pred             EeeCCCcceEE-EEEcCCCCEEEEEECCCcEEEE
Q 005913          584 PLMGHTSCVWT-LAYSCEGSLLASGSADCTVKLW  616 (670)
Q Consensus       584 ~~~~h~~~V~s-l~~s~~g~~l~sgs~Dg~I~iw  616 (670)
                      ++..+...+.+ ..+. + +.|+.++.||.|..|
T Consensus       345 ~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       345 RLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            88766644332 2332 3 458889999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.74  E-value=1.1e-07  Score=91.00  Aligned_cols=195  Identities=14%  Similarity=0.168  Sum_probs=119.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      |+.+.++.+ ..|+++..++.+......++.            ...++..|..+-.+-..+-.+..+++++.||.+.+.+
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            555566532 345555555544443332221            2233333444433334444567899999999999999


Q ss_pred             CCCCcee-EEec-ccCCCeeEEEEcCCCCEEEEEE-----cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC-CCEEE
Q 005913          492 MDRIQPL-RIMA-GHLSDVDCVRWHINCNYIATGS-----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMA  563 (670)
Q Consensus       492 ~~~~~~~-~~~~-~~~~~v~~v~~~p~~~~l~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-g~~l~  563 (670)
                      .+.-..+ +.+. .|.+ -.+.+....++.+.++.     .-+..+.|+++..+....-......|++++-+|. ...++
T Consensus       118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~  196 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC  196 (319)
T ss_pred             chHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence            8752111 1111 1211 12222333455555543     2234566666654433222222344999999995 45677


Q ss_pred             EEECCCeEEEEeCCCCe-eeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 005913          564 SGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       564 sg~~dg~I~iwDl~~~~-~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      +|+.||.+.+||.+... +...+..|..+|+.+-|+| ++..|++++.||.+.-||-.+
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            88899999999999874 3345678999999999999 677999999999999999875

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=3.4e-07  Score=100.19  Aligned_cols=182  Identities=16%  Similarity=0.206  Sum_probs=136.6

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      ...++|++++  +++|+-|+.+|.|++++.... . .....|...      .-+|.|+++|+.||+|.|-.+-+.+....
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3567777777  789999999999999998743 2 333334433      55899999999999999999988877766


Q ss_pred             ecccCCCeeEEEEcCC-----CCEEEEEEcCCcEEEEECC---CCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913          501 MAGHLSDVDCVRWHIN-----CNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~-----~~~l~tgs~dg~I~iwd~~---~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~  572 (670)
                      +. ...++.+++++|+     ++.+++|+.-| +.++.-+   ....+ ......|+|.++.|.  |.++|-++.+| |+
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~  182 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VK  182 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cE
Confidence            65 3478999999997     57899999888 8777643   22222 455667899999997  88999998887 89


Q ss_pred             EEeCCCCeeeEEeeCCCcc------eEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          573 MWDLASGRCVTPLMGHTSC------VWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~~~------V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      +||+.+++.+..+......      -..+.|.++.+ |+.| ...+|+|..+..
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK  234 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence            9999999888777643332      34578887655 4444 334789988873

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.67  E-value=2.6e-05  Score=78.78  Aligned_cols=227  Identities=16%  Similarity=0.164  Sum_probs=153.2

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          354 LNCASISQ-DGSLVAGGFSDSS-LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       354 V~~l~fs~-d~~~La~g~~dg~-I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ...++.+| ++..+|.+-.-|. ..+||..+........                    ...-+.+.||      -.||+
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~--------------------a~~gRHFyGH------g~fs~   60 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW--------------------APPGRHFYGH------GVFSP   60 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc--------------------CCCCCEEecC------EEEcC
Confidence            44677788 5666777766666 6678877543222111                    1123456677      37999


Q ss_pred             CCCEEEEEe-----CCCeEEEEeCC-CCceeEEeeCCCccEeEEEEecCCCEEEEEE------------------CCCcE
Q 005913          432 LGDFILSSS-----ADTTIRLWSTK-LNANLVCYKGHNYPVWDVQFNPQGHYFASSS------------------HDRTA  487 (670)
Q Consensus       432 ~~~~L~s~s-----~Dg~I~lwd~~-~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s------------------~dg~v  487 (670)
                      ||++|++.-     ..|.|-|||.. +...+..+..|.-.-..+.+.|+|..|+++-                  .+.++
T Consensus        61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL  140 (305)
T PF07433_consen   61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL  140 (305)
T ss_pred             CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence            999999864     35889999999 6677888888877778899999998888763                  13456


Q ss_pred             EEEECCCCceeEE--e--cccCCCeeEEEEcCCCCEEEEEEcCC-------cEEEEECCCCcEEEEEe-------cCCCC
Q 005913          488 RIWSMDRIQPLRI--M--AGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI-------GHRSM  549 (670)
Q Consensus       488 ~lwd~~~~~~~~~--~--~~~~~~v~~v~~~p~~~~l~tgs~dg-------~I~iwd~~~~~~~~~~~-------~h~~~  549 (670)
                      ...|..+++.+..  +  ..|...|..+++.++|..++..-..|       -|.+++.  +..+..+.       .-.+.
T Consensus       141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y  218 (305)
T PF07433_consen  141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGY  218 (305)
T ss_pred             EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCc
Confidence            6667777777665  3  23777899999999987766654433       2344432  33233222       23467


Q ss_pred             eEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCc
Q 005913          550 ILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT  612 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~  612 (670)
                      +-+|+++++|.++++.+ .-|.+.+||..+++.+....-.  .+..++-.+++ +++|.+ .|.
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC-Ccc
Confidence            89999999998776555 6678999999999988765432  35566666666 555544 444

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=9e-07  Score=96.94  Aligned_cols=180  Identities=14%  Similarity=0.257  Sum_probs=131.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..++|++++  +++||-|+.+|.|++++.+..                             . .....|+..      ..
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------------~-~~~~~~s~~------~~   81 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------------P-KTNFDHSSS------IL   81 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc-----------------------------c-ccccccccc------cc
Confidence            457888887  679999999999999997641                             1 222234333      56


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC-----CCEEEEEECCCcEEEEECC---CCceeEEecc
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMD---RIQPLRIMAG  503 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-----g~~l~s~s~dg~v~lwd~~---~~~~~~~~~~  503 (670)
                      +|.+++|||.||+|.|-.+-+.+....+. ...++.+++++|+     ...|++||.-| +.++.-+   +...+ ....
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~  158 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE  158 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence            79999999999999999999888877766 4568999999997     56799999888 7776532   22222 3455


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC------eEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM------ILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~------I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                      ..++|.++.|  .|+++|-++.+| |++||+.+++.+..+......      -..+.|.++.+ |+.| ...+|+|..++
T Consensus       159 ~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  159 GEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             CccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            6688999999  578999887776 899999998887766543332      23567776654 4444 44568888887

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=1.5e-07  Score=93.33  Aligned_cols=167  Identities=14%  Similarity=0.193  Sum_probs=125.6

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-----ceeEE
Q 005913          428 SFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-----QPLRI  500 (670)
Q Consensus       428 ~~sp~--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-----~~~~~  500 (670)
                      +|+-+  +-. ++.+.+-.|-+-++.++-.. .+. ..+.|.++.|...+..++.|+.+|.|..+|++..     .+...
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            56532  223 45556677888898876322 222 4667889999998999999999999999999754     34444


Q ss_pred             ecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcE---EEEEecCCCCeEE--EEEcCCCCEEEEEECCCeEEEE
Q 005913          501 MAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILS--LAMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~--l~~sp~g~~l~sg~~dg~I~iw  574 (670)
                      +. |.+.|+|+..-. ++.+|++.+.+|+|.+||++.-++   ++.+.+|...-.-  +.+.+....++++++|...+||
T Consensus       295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence            43 889999998776 788999999999999999997766   8999998654332  3345667789999999999999


Q ss_pred             eCCCCeeeEEeeCCC----cceEEEEEc
Q 005913          575 DLASGRCVTPLMGHT----SCVWTLAYS  598 (670)
Q Consensus       575 Dl~~~~~~~~~~~h~----~~V~sl~~s  598 (670)
                      .++.|..+.++....    ..+++++|.
T Consensus       374 sl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  374 SLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ecccCceeeccCCCCccccccccceehh
Confidence            999999998876432    234555553

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.59  E-value=7.3e-05  Score=75.56  Aligned_cols=198  Identities=13%  Similarity=0.123  Sum_probs=140.7

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCe-EEEEeCCCCceeEEeeCCCccE--eEEEEecCCCEEEEEE-----CCCcEEEEECC-
Q 005913          424 VYSASFSP-LGDFILSSSADTT-IRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSS-----HDRTARIWSMD-  493 (670)
Q Consensus       424 V~~l~~sp-~~~~L~s~s~Dg~-I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~g~~l~s~s-----~dg~v~lwd~~-  493 (670)
                      ...++.+| ....++.+-.-|+ ..+||..+++....+......-  -.-.||++|++|++.-     ..|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34577888 4456667766665 6679999888776654322211  1357999999999874     35899999998 


Q ss_pred             CCceeEEecccCCCeeEEEEcCCCCEEEEEE------------------cCCcEEEEECCCCcEEEEEe----cCCCCeE
Q 005913          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGS------------------SDKTVRLWDVSSGECVRIFI----GHRSMIL  551 (670)
Q Consensus       494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs------------------~dg~I~iwd~~~~~~~~~~~----~h~~~I~  551 (670)
                      +.+.+..+..|.-....+.+.|+|..|+++.                  .+.++...|..+|+.+....    .|...|.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            6677778887777777888999998877753                  23457778888998877643    3777899


Q ss_pred             EEEEcCCCCEEEEEECCCe-------EEEEeCCCCeeeEEee-------CCCcceEEEEEcCCCCEEEEE-ECCCcEEEE
Q 005913          552 SLAMSPDGRYMASGDEDGT-------IMMWDLASGRCVTPLM-------GHTSCVWTLAYSCEGSLLASG-SADCTVKLW  616 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~~dg~-------I~iwDl~~~~~~~~~~-------~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iw  616 (670)
                      .+++.++|..++..-..|.       |-+++...  .+..+.       ...+.|-++++++++.++++. -.-|.+.+|
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            9999999988777655442       44444332  222222       234678899999999877554 467899999


Q ss_pred             eCCCCcc
Q 005913          617 DVTTSTK  623 (670)
Q Consensus       617 d~~~~~~  623 (670)
                      |..++..
T Consensus       245 d~~tg~~  251 (305)
T PF07433_consen  245 DAATGRL  251 (305)
T ss_pred             ECCCCCE
Confidence            9988754

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.58  E-value=7.8e-06  Score=93.52  Aligned_cols=236  Identities=14%  Similarity=0.137  Sum_probs=149.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ..+.|.++.|..++.-++.++..|.|.+-|..+..                             ......-.+.|.+++|
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-----------------------------~eivg~vd~GI~aasw  117 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-----------------------------LEIVGNVDNGISAASW  117 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccc-----------------------------eeeeeeccCceEEEee
Confidence            34579999999999999999999999998765421                             1112224578999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeC----CCCce-------------------eEEeeCCC---------------------cc
Q 005913          430 SPLGDFILSSSADTTIRLWST----KLNAN-------------------LVCYKGHN---------------------YP  465 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~----~~~~~-------------------~~~~~~h~---------------------~~  465 (670)
                      |||...++..+..+++.+-.-    -..+.                   -..++|..                     ..
T Consensus       118 S~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~  197 (1265)
T KOG1920|consen  118 SPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH  197 (1265)
T ss_pred             cCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC
Confidence            999999999888888776432    11111                   11222111                     11


Q ss_pred             EeEEEEecCCCEEEEEE----CC-CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCCC
Q 005913          466 VWDVQFNPQGHYFASSS----HD-RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSG  537 (670)
Q Consensus       466 V~~l~~sp~g~~l~s~s----~d-g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~  537 (670)
                      =.+|.|--||.+||+..    .+ +.+++||-+ +..-..-....+.-.+++|-|.|..+++-.   +|+.|.++.- +|
T Consensus       198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NG  275 (1265)
T KOG1920|consen  198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NG  275 (1265)
T ss_pred             CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CC
Confidence            13489999999999843    33 899999987 332222222334456899999999999854   4567888874 33


Q ss_pred             cEEE----EEecCCCCeEEEEEcCCCCEEEE---EECCCeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCC-CEEEEE
Q 005913          538 ECVR----IFIGHRSMILSLAMSPDGRYMAS---GDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEG-SLLASG  607 (670)
Q Consensus       538 ~~~~----~~~~h~~~I~~l~~sp~g~~l~s---g~~dg~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g-~~l~sg  607 (670)
                      -.-.    .+.....++..++|+.++..|++   ......|++|-+.+..-  -..+.......  +.|+|.- ..|..-
T Consensus       276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~  353 (1265)
T KOG1920|consen  276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVL  353 (1265)
T ss_pred             ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEE
Confidence            2222    22223345899999999999998   55555699999876432  12222222222  6677632 233333


Q ss_pred             ECCCcEEEEeC
Q 005913          608 SADCTVKLWDV  618 (670)
Q Consensus       608 s~Dg~I~iwd~  618 (670)
                      ..+|...++++
T Consensus       354 ~~sG~~~v~~~  364 (1265)
T KOG1920|consen  354 RESGQRLVRDF  364 (1265)
T ss_pred             ecCCcEEEEEE
Confidence            35555555544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.58  E-value=1.3e-05  Score=78.67  Aligned_cols=199  Identities=14%  Similarity=0.170  Sum_probs=113.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC-
Q 005913          355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG-  433 (670)
Q Consensus       355 ~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-  433 (670)
                      .-++||||+.+||.+.+.|+|++||+.+..........                      .....-..+|.++.|.+.. 
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~----------------------~~~~d~~~Aiagl~Fl~~~~  104 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM----------------------SFPGDLSDAIAGLIFLEYKK  104 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccc----------------------ccCCccccceeeeEeecccc
Confidence            45789999999999999999999998752221111000                      0000123556666664422 


Q ss_pred             -----CEEEEEeCCCeEEEEeCCC-----CceeEEe--eC-CCccEeEEEEecCCCEEEEEECCCc-----------EEE
Q 005913          434 -----DFILSSSADTTIRLWSTKL-----NANLVCY--KG-HNYPVWDVQFNPQGHYFASSSHDRT-----------ARI  489 (670)
Q Consensus       434 -----~~L~s~s~Dg~I~lwd~~~-----~~~~~~~--~~-h~~~V~~l~~sp~g~~l~s~s~dg~-----------v~l  489 (670)
                           ..|++-..+|.++=|-+..     .+....+  .. +...|.++.|+|..+.|++||....           +..
T Consensus       105 s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLta  184 (282)
T PF15492_consen  105 SAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTA  184 (282)
T ss_pred             ccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceE
Confidence                 2455666677777665432     1222232  22 3668999999999888888764322           222


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg  569 (670)
                      |.+-++.|-.....          .-+...-....   +-.+|.+-+.+...........|..|..||||..||+...+|
T Consensus       185 WRiL~~~Pyyk~v~----------~~~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG  251 (282)
T PF15492_consen  185 WRILSDSPYYKQVT----------SSEDDITASSK---RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG  251 (282)
T ss_pred             EEEcCCCCcEEEcc----------ccCcccccccc---ccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCC
Confidence            32222221111000          00000000111   112333332222222223456799999999999999999999


Q ss_pred             eEEEEeCCCCeeeEEeeCC
Q 005913          570 TIMMWDLASGRCVTPLMGH  588 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h  588 (670)
                      .|.+|++.+-++...+..+
T Consensus       252 ~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  252 SLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             eEEEEecCcchhhcccchh
Confidence            9999999987777665433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=8e-07  Score=91.13  Aligned_cols=248  Identities=15%  Similarity=0.164  Sum_probs=172.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      |...|+.+..+ -.+++.+++-||.++.|.-....                         ....+..+..|.+.|.+++.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is-------------------------GvEfVKhFraHL~~I~sl~~   61 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS-------------------------GVEFVKHFRAHLGVILSLAV   61 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCcc-------------------------ceeehhhhHHHHHHHHhhhc
Confidence            44455555443 57899999999999999754200                         01234446678899999999


Q ss_pred             cCCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCCCccEeEEEEe-cCC---CEEEEE-ECCCcEEEEECCCCc--eeEEe
Q 005913          430 SPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQG---HYFASS-SHDRTARIWSMDRIQ--PLRIM  501 (670)
Q Consensus       430 sp~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~g---~~l~s~-s~dg~v~lwd~~~~~--~~~~~  501 (670)
                      +-++..+.|.+. |..++++|+.....+..++...-|= .+.|. ..|   ..++++ -.++.+.++|-....  ....-
T Consensus        62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk  140 (558)
T KOG0882|consen   62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK  140 (558)
T ss_pred             cccceeEeeccCcccceeEEEeeccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence            999999999777 9999999998766553333222111 12222 222   123333 367889999975433  23333


Q ss_pred             cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------CcEE---------EEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECV---------RIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~------~~~~---------~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      .-|.++|.++.+.|.+..+++....|.|.-|....      .+..         ..+........++.|+|+|..+.+-+
T Consensus       141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence            46999999999999999999999999999998762      1111         11122345678999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEEee--------------------------------CCC-cceEEEEEcCCCCEEEEEECCCcE
Q 005913          567 EDGTIMMWDLASGRCVTPLM--------------------------------GHT-SCVWTLAYSCEGSLLASGSADCTV  613 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~--------------------------------~h~-~~V~sl~~s~~g~~l~sgs~Dg~I  613 (670)
                      .|..|++++..+|+.+..+.                                .|. ..-+.+.|...|++|+-|+-=| |
T Consensus       221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i  299 (558)
T KOG0882|consen  221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I  299 (558)
T ss_pred             cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence            99999999999887654431                                122 2235577888899999887665 8


Q ss_pred             EEEeCCCCcccc
Q 005913          614 KLWDVTTSTKVL  625 (670)
Q Consensus       614 ~iwd~~~~~~~~  625 (670)
                      +|.++.+++...
T Consensus       300 kvin~~tn~v~r  311 (558)
T KOG0882|consen  300 KVINLDTNTVVR  311 (558)
T ss_pred             EEEEeecCeEEE
Confidence            888888876543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=9e-07  Score=90.78  Aligned_cols=247  Identities=14%  Similarity=0.164  Sum_probs=169.9

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCcEEEEECCCC
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRI  495 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~~~  495 (670)
                      |...|+.+... -.+++.+++.||.++.|.-..   -+.+..+..|...|.+++.+-+|..+.|++. |..++++|+++.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            66777766554 467999999999999998653   1234556778999999999999999999887 999999999876


Q ss_pred             ceeEEecccCCCeeEEEEc-CCC---CEEEEE-EcCCcEEEEECCCCcE-E-EEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913          496 QPLRIMAGHLSDVDCVRWH-INC---NYIATG-SSDKTVRLWDVSSGEC-V-RIFIGHRSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       496 ~~~~~~~~~~~~v~~v~~~-p~~---~~l~tg-s~dg~I~iwd~~~~~~-~-~~~~~h~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                      ..+..+....-+ ..+.|. ..|   ..|+++ -.++.|.++|-....+ . ..-.-|..+|.++.++|-+..+++....
T Consensus        87 DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   87 DMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             chhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            555433321111 112222 222   134433 3578999999875543 2 2334588999999999999999999999


Q ss_pred             CeEEEEeCCC------Ceee---------EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCC
Q 005913          569 GTIMMWDLAS------GRCV---------TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT  633 (670)
Q Consensus       569 g~I~iwDl~~------~~~~---------~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~  633 (670)
                      |.|.-|....      .+..         ..+....+...++.|+|+|..+.+-+.|..|+++++.++......++....
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~  245 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD  245 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence            9999998762      1111         112223456789999999999999999999999999998776655432100


Q ss_pred             -----ccc------------ccccccC-CCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          634 -----NRL------------RSLKTLP-TKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       634 -----~~~------------~~~~~~~-~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                           ..+            ..-+.+. ....+-....|...|.+|..|+.-|
T Consensus       246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g  298 (558)
T KOG0882|consen  246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG  298 (558)
T ss_pred             hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence                 000            0001111 2234556788999999888887544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.52  E-value=2.2e-06  Score=94.90  Aligned_cols=149  Identities=16%  Similarity=0.294  Sum_probs=117.5

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC---------CCcEEEEEC
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---------DRTARIWSM  492 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---------dg~v~lwd~  492 (670)
                      +.|+-++.+  ++++.+|...|+|.+-|.++.+.+..+..|.+.|.++..  .|+.+++||.         |..|.+||+
T Consensus       178 ~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  178 SGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             CceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence            346666654  889999999999999999999999999999999977655  6889999874         667899999


Q ss_pred             CCCceeEEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECC---CC-cEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS---SG-ECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~---~~-~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      +..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+.|..   +. ..+..+......+..+.+|++|..|+.|..
T Consensus       254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence            887666555544333 55778885 4578888899999999933   22 123334444556999999999999999999


Q ss_pred             CCeEEEEe
Q 005913          568 DGTIMMWD  575 (670)
Q Consensus       568 dg~I~iwD  575 (670)
                      +|.|.+|-
T Consensus       333 ~g~v~~wa  340 (1118)
T KOG1275|consen  333 EGHVNLWA  340 (1118)
T ss_pred             cCcEeeec
Confidence            99999997

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.49  E-value=2.8e-06  Score=94.08  Aligned_cols=180  Identities=13%  Similarity=0.122  Sum_probs=137.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~  512 (670)
                      +..++.|+-...+..+|+++.+......-....|.-+.  .+++++++|...|+|.+-|.++.+.+..+..|.+.|..+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            45566676666788889988777666554444454443  4688999999999999999999999999999999998765


Q ss_pred             EcCCCCEEEEEEc---------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCC-ee
Q 005913          513 WHINCNYIATGSS---------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASG-RC  581 (670)
Q Consensus       513 ~~p~~~~l~tgs~---------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~-~~  581 (670)
                        -.||.|++++.         |.-|.+||+|.-+.+.-+.-+.++ .-+.|.|. ...+++++..|...+-|..+. .+
T Consensus       225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence              47889998773         567899999987766555545444 45678884 457888888999999994321 22


Q ss_pred             ---eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          582 ---VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       582 ---~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                         +..+....+.+.++++|++|+.++.|..+|.|.+|.
T Consensus       302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence               223333445599999999999999999999999998

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=2.5e-05  Score=86.55  Aligned_cols=206  Identities=10%  Similarity=0.082  Sum_probs=137.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC-EEEEEEcC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASFSP  431 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp  431 (670)
                      .|+  +|++.+..+|.|+.+|.|.+.+-.-                             ...+-++.+... |..+....
T Consensus        27 ~is--c~~s~~~~vvigt~~G~V~~Ln~s~-----------------------------~~~~~fqa~~~siv~~L~~~~   75 (933)
T KOG2114|consen   27 AIS--CCSSSTGSVVIGTADGRVVILNSSF-----------------------------QLIRGFQAYEQSIVQFLYILN   75 (933)
T ss_pred             cee--EEcCCCceEEEeeccccEEEecccc-----------------------------eeeehheecchhhhhHhhccc
Confidence            444  4567889999999999988877431                             222445555555 44443333


Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCC------cee--EEeeC-----CCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          432 LGDFILSSSADT-----TIRLWSTKLN------ANL--VCYKG-----HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       432 ~~~~L~s~s~Dg-----~I~lwd~~~~------~~~--~~~~~-----h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      ...+|++.+.|+     .|++|+++.-      .++  ....+     ...|+.+++.+.+-..+|+|-.+|.|.++.-+
T Consensus        76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD  155 (933)
T KOG2114|consen   76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD  155 (933)
T ss_pred             CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence            346788777665     4899998632      122  11112     35678999999999999999999999998532


Q ss_pred             ----CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913          494 ----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       494 ----~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                          .+...........+|+.+++..++..++.......|.+|.+.... .......|+..+.|-.+++....+++++. 
T Consensus       156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-  234 (933)
T KOG2114|consen  156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-  234 (933)
T ss_pred             chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-
Confidence                333333334456789999999888874444445679999987444 24456778888999999986554555543 


Q ss_pred             CeEEEEeCCCCeeeEEee-CCCc
Q 005913          569 GTIMMWDLASGRCVTPLM-GHTS  590 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~-~h~~  590 (670)
                      ..+.+||.....+...+. +|..
T Consensus       235 e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  235 EFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             ceEEEEcCCCcceeeeecCCCeE
Confidence            469999987655555555 5554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.44  E-value=6e-07  Score=62.07  Aligned_cols=39  Identities=46%  Similarity=0.962  Sum_probs=36.9

Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      |+++..+.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=3.9e-05  Score=84.98  Aligned_cols=193  Identities=13%  Similarity=0.183  Sum_probs=130.9

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCC-----cEEEEECCCC------
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDR-----TARIWSMDRI------  495 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg-----~v~lwd~~~~------  495 (670)
                      +|++.+..++.|+.+|.|.+.+-. .+.+..++.+...+...-|.-++ .++++.+.|+     .+++|+++..      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            477888999999999988877643 33446677776663333344343 6777777664     5899998643      


Q ss_pred             cee---EEec----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEE--CC--CCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          496 QPL---RIMA----GHLSDVDCVRWHINCNYIATGSSDKTVRLWD--VS--SGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       496 ~~~---~~~~----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd--~~--~~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      +++   +.+.    ....++.+++.|.+-+.+++|-.+|.|..+.  +.  .|...........+|+.+++..++..++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            223   2222    1345688999999999999999999999984  21  12222222334578999999999987444


Q ss_pred             EECCCeEEEEeCCCCee-eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          565 GDEDGTIMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~-~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      +..-..|.+|.+....+ ...+..|..++.|.++++....+++++. ..|.+|+....+
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~  246 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG  246 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence            44456799999873332 4446677788999999876654655553 468999987544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=1.2e-05  Score=88.26  Aligned_cols=278  Identities=12%  Similarity=0.097  Sum_probs=162.3

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          349 NTHNGLNCASISQDGSLVAGGF----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .....-+-..|+|...++|+++    ..|+|.||--.+.                           ........   -.+
T Consensus        13 Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGE---------------------------Pqr~Vt~P---~ha   62 (1416)
T KOG3617|consen   13 DSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGE---------------------------PQRDVTYP---VHA   62 (1416)
T ss_pred             cccccccccccCCCCceeEEEEecCCCCceEEEEecCCC---------------------------CCcccccc---eeh
Confidence            3333344567889999998875    4678888853321                           01111111   235


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE-----
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-----  499 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~-----  499 (670)
                      ++++|+|..-.|++|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.+.+|..+....+.     
T Consensus        63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~  142 (1416)
T KOG3617|consen   63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIM  142 (1416)
T ss_pred             hhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhh
Confidence            669999988889999999999999998877777777899999999999999999999999999999876211110     


Q ss_pred             -------------Eec---------------ccCCCeeE-EEE-------------cCCCCEEEEEEcCCcEEEEECCCC
Q 005913          500 -------------IMA---------------GHLSDVDC-VRW-------------HINCNYIATGSSDKTVRLWDVSSG  537 (670)
Q Consensus       500 -------------~~~---------------~~~~~v~~-v~~-------------~p~~~~l~tgs~dg~I~iwd~~~~  537 (670)
                                   .+.               +..+.+.. .-|             .|+|..++.++.+|+|+-.|- .|
T Consensus       143 ~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g  221 (1416)
T KOG3617|consen  143 QHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NG  221 (1416)
T ss_pred             hhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CC
Confidence                         000               00111110 011             256777888888999888873 45


Q ss_pred             cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CC---------------Ce------------eeE---Ee-
Q 005913          538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-AS---------------GR------------CVT---PL-  585 (670)
Q Consensus       538 ~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl-~~---------------~~------------~~~---~~-  585 (670)
                      ++....... +. ..+-|.+...-+.....+-++.++=. .+               |.            .+.   .+ 
T Consensus       222 ~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg  299 (1416)
T KOG3617|consen  222 RQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYG  299 (1416)
T ss_pred             cEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchh
Confidence            544433211 11 11222221111111111111111110 00               00            000   00 


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g  664 (670)
                      ......+.+++++..+..|+.|...|.+.+|--....-.    ...+...+ .+.......+.|..+.|+|.-.++++-
T Consensus       300 ~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~----g~p~~d~w-~l~~~~e~~g~I~~i~Wg~~k~~~avn  373 (1416)
T KOG3617|consen  300 LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQ----GDPTIDVW-TLNGKRESLGKISLIRWGPIKSTAAVN  373 (1416)
T ss_pred             hhcCCceEEEEEeccceEEEecccCCcEEEeeecCcccc----CCCCcceE-EecCchhhccceEEEEeccccchhhhh
Confidence            012346899999999999999999999999964332111    00111111 122333445679999999876655543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.41  E-value=9.4e-07  Score=61.09  Aligned_cols=39  Identities=62%  Similarity=1.108  Sum_probs=37.0

Q ss_pred             CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       537 ~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                      |+++..+.+|.+.|.+++|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.40  E-value=0.00014  Score=78.22  Aligned_cols=111  Identities=22%  Similarity=0.305  Sum_probs=81.3

Q ss_pred             eEEEEec-CCCEEEEEE----CCCc----EEEEECCCCceeE--Ee-cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC
Q 005913          467 WDVQFNP-QGHYFASSS----HDRT----ARIWSMDRIQPLR--IM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV  534 (670)
Q Consensus       467 ~~l~~sp-~g~~l~s~s----~dg~----v~lwd~~~~~~~~--~~-~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~  534 (670)
                      .++.|+- +...+.+..    .+|.    -++|++...+..+  .. -...+.|.|++++|+...++.|+.||+|.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            5677776 444555542    3343    3456665443222  11 146678999999999999999999999999998


Q ss_pred             CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       535 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      ..+....  ....-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       289 ~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  289 TRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            7774433  234456789999999999999999999999998643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.9e-05  Score=80.34  Aligned_cols=204  Identities=16%  Similarity=0.196  Sum_probs=127.2

Q ss_pred             eeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEE
Q 005913          414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWS  491 (670)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd  491 (670)
                      ...+.+|...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+ .++|+++|.-+ .+++..|-..|.|.+||
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            336678889999999999888 6788999999999999999999988888 68999999885 45677788999999999


Q ss_pred             CCCCc-------------eeEEec---------------------------------------ccCCCeeEEEEcCCCCE
Q 005913          492 MDRIQ-------------PLRIMA---------------------------------------GHLSDVDCVRWHINCNY  519 (670)
Q Consensus       492 ~~~~~-------------~~~~~~---------------------------------------~~~~~v~~v~~~p~~~~  519 (670)
                      ++..+             ++..+.                                       +..+...++++++..+.
T Consensus       265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh  344 (463)
T KOG1645|consen  265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH  344 (463)
T ss_pred             ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence            97532             111100                                       00112233344443344


Q ss_pred             EEEEEcCC-------cEE-EEECCCCcEEEEEe-cCCC-C------eEEEEEcCCCCEEE-EEECCCeEEEEeCCCCeee
Q 005913          520 IATGSSDK-------TVR-LWDVSSGECVRIFI-GHRS-M------ILSLAMSPDGRYMA-SGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       520 l~tgs~dg-------~I~-iwd~~~~~~~~~~~-~h~~-~------I~~l~~sp~g~~l~-sg~~dg~I~iwDl~~~~~~  582 (670)
                      ++......       .|- --|-.+|..+...+ ++.+ .      -..+.-.++.++++ +|+..+.+.+||..++..+
T Consensus       345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv  424 (463)
T KOG1645|consen  345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV  424 (463)
T ss_pred             EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence            44332220       011 11223333332211 1111 0      01122233445554 4566788999999999998


Q ss_pred             EEeeCCCcceEEEEEcC-CC-CEEEEEECCCcEEEEeCCC
Q 005913          583 TPLMGHTSCVWTLAYSC-EG-SLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       583 ~~~~~h~~~V~sl~~s~-~g-~~l~sgs~Dg~I~iwd~~~  620 (670)
                      .++.- +.+|..++... ++ .+|++-. |..++||..++
T Consensus       425 Q~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  425 QTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             eeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence            88754 36777776543 33 3555554 56788887653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.37  E-value=0.00021  Score=76.16  Aligned_cols=231  Identities=18%  Similarity=0.229  Sum_probs=127.8

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-eeCC----------------CccEeEEEEecCCCEEEEEEC
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGH----------------NYPVWDVQFNPQGHYFASSSH  483 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~h----------------~~~V~~l~~sp~g~~l~s~s~  483 (670)
                      ...+....|||+|+.++... ++.|.+++..++...+. ..+.                -..-..+-|||||++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788899999999999886 57899999877643321 1120                012246889999999988643


Q ss_pred             C-Cc-----------------------------------EEEEECCCCceeEEe-----cccCCCeeEEEEcCCCCEEEE
Q 005913          484 D-RT-----------------------------------ARIWSMDRIQPLRIM-----AGHLSDVDCVRWHINCNYIAT  522 (670)
Q Consensus       484 d-g~-----------------------------------v~lwd~~~~~~~~~~-----~~~~~~v~~v~~~p~~~~l~t  522 (670)
                      | ..                                   +.++|+.+++....-     ......+..+.|.++++.|+.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            2 11                                   334455444432111     122334778899999884544


Q ss_pred             EEc--CC---cEEEEECCCCcEEEEEec-CCCCe---EEEEEc-CCCC-EEEEEECCCe--EEEEeCCCCeeeEEeeCCC
Q 005913          523 GSS--DK---TVRLWDVSSGECVRIFIG-HRSMI---LSLAMS-PDGR-YMASGDEDGT--IMMWDLASGRCVTPLMGHT  589 (670)
Q Consensus       523 gs~--dg---~I~iwd~~~~~~~~~~~~-h~~~I---~~l~~s-p~g~-~l~sg~~dg~--I~iwDl~~~~~~~~~~~h~  589 (670)
                      .-.  +.   .+.++|..++.+...... ..+.|   ....|. +++. +|.....+|.  |.+++...+. ...+....
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~  279 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD  279 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence            332  22   477788887766444432 22222   345554 5554 5555556665  5555665555 34555555


Q ss_pred             cceEE-EEEcCCCCEE-EEEECC--CcEEEEeCCCC-ccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913          590 SCVWT-LAYSCEGSLL-ASGSAD--CTVKLWDVTTS-TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       590 ~~V~s-l~~s~~g~~l-~sgs~D--g~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g  664 (670)
                      -.|.. +.|+++++.| +++..+  +.-.+|.+... ..           .   +..+......-..+.|||++++++..
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-----------~---~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-----------E---PKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-----------E---EEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-----------C---eEeccCCCCCceEEEECCCCCEEEEE
Confidence            66755 6778876654 455543  34444444332 10           0   11222222222899999999998865


Q ss_pred             eCC
Q 005913          665 ALS  667 (670)
Q Consensus       665 s~d  667 (670)
                      ...
T Consensus       346 ~s~  348 (353)
T PF00930_consen  346 YSG  348 (353)
T ss_dssp             EES
T ss_pred             EcC
Confidence            543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.35  E-value=6.8e-05  Score=82.47  Aligned_cols=187  Identities=11%  Similarity=0.127  Sum_probs=117.5

Q ss_pred             CCCEEEEEeC-CCeEEEEeCCCCceeEEeeC-CCccEeEEE-------------------EecCCCEEEEEE-CCCcEEE
Q 005913          432 LGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQ-------------------FNPQGHYFASSS-HDRTARI  489 (670)
Q Consensus       432 ~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~-------------------~sp~g~~l~s~s-~dg~v~l  489 (670)
                      ||++|+.-.. ++.|-..+++..++-..+.- ....+..+.                   ++|+|+.+...+ ..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            5778877653 55666667766655433321 111122222                   334554432222 3356677


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE----------------------------------------cCCcE
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS----------------------------------------SDKTV  529 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs----------------------------------------~dg~I  529 (670)
                      +|.++.+....+.-. .....++++|+|+++++.+                                        .++.|
T Consensus       220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V  298 (635)
T PRK02888        220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV  298 (635)
T ss_pred             EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence            787776665554432 2445677788888877765                                        12457


Q ss_pred             EEEECCC----CcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCee------------eEEeeCCCcce
Q 005913          530 RLWDVSS----GECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC------------VTPLMGHTSCV  592 (670)
Q Consensus       530 ~iwd~~~----~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~------------~~~~~~h~~~V  592 (670)
                      .++|.++    +..+..+..-......+.+||||+++++++ .++.+.|.|+.+.+.            +.+..--.+ .
T Consensus       299 ~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-P  377 (635)
T PRK02888        299 PVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-P  377 (635)
T ss_pred             EEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-c
Confidence            7777776    333333333445677899999999887755 589999999987552            333332223 3


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          593 WTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ...+|+++|+.+.|-..|..|..|++..
T Consensus       378 LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        378 LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEECCCCCEEEeEeecceeEEEehHH
Confidence            4678999999999999999999999986

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.35  E-value=0.00014  Score=78.90  Aligned_cols=186  Identities=10%  Similarity=-0.033  Sum_probs=117.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeE-EEEec--CCCEEEEEECCCcEEEEECCCCceeEEecccCC---
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-VQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---  506 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~---  506 (670)
                      +..++.++.+|.+..+|..+++.+-.+......+.. ..-+|  .+..++.++.+|.+..+|..+++.+........   
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~  239 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA  239 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence            456677788899999999999887766532111100 00111  233567778889999999998887655431100   


Q ss_pred             ----CeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          507 ----DVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       507 ----~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                          ....+.-+|  .+..+++++.+|.+..+|..+|+.+.....  +....+..  .+..++.++.+|.+..+|..+|+
T Consensus       240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence                000111122  355677788899999999999988765432  11112222  46678888899999999999998


Q ss_pred             eeEEeeCCCc-ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          581 CVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       581 ~~~~~~~h~~-~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      .+-....... ...+...  .+..|+.++.||.|.+.|..+++..
T Consensus       316 ~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        316 ELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             EEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            7654322111 1122222  2567888999999999999887643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.35  E-value=8.4e-05  Score=74.22  Aligned_cols=178  Identities=16%  Similarity=0.133  Sum_probs=119.0

Q ss_pred             CCeEEEEeCCCCceeEEeeCCCccEeEEE--EecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCE
Q 005913          442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY  519 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~--~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  519 (670)
                      +|+|..||..+++.+....-.. .+....  ..+++.++++++.++.+..||..+++.+..+.. ...+.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence            6899999999999887775311 121222  333566788889999999999999998877764 22222211 235567


Q ss_pred             EEEEEcCCcEEEEECCCCcEEEEE-ecCC---CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcc----
Q 005913          520 IATGSSDKTVRLWDVSSGECVRIF-IGHR---SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC----  591 (670)
Q Consensus       520 l~tgs~dg~I~iwd~~~~~~~~~~-~~h~---~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~----  591 (670)
                      +++++.++.|+.+|..+|+.+... ....   ...........+..++++..+|.|..+|+.+|+.+.........    
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            777778899999999999998874 3321   11222333334888999999999999999999998877654322    


Q ss_pred             ------eEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          592 ------VWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       592 ------V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                            +.+-....++ .++.++.+|.+..+|+.++..
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~  195 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEK  195 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEE
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCE
Confidence                  1122222244 777777777544449988764

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.33  E-value=6.6e-05  Score=86.19  Aligned_cols=198  Identities=17%  Similarity=0.210  Sum_probs=138.1

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC----C--
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD----R--  494 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~----~--  494 (670)
                      .+.|.++.|..+...++.+..+|.|.+-|..+..... ...-...|.+++|+||+..++..+..+++.+-+-+    .  
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            3689999999999999999999999999887654322 22245679999999999999999998888775431    0  


Q ss_pred             -----------------CceeEEeccc---------------------CCCeeEEEEcCCCCEEEEEE-----cCCcEEE
Q 005913          495 -----------------IQPLRIMAGH---------------------LSDVDCVRWHINCNYIATGS-----SDKTVRL  531 (670)
Q Consensus       495 -----------------~~~~~~~~~~---------------------~~~v~~v~~~p~~~~l~tgs-----~dg~I~i  531 (670)
                                       |+....|.|.                     .+.=..|.|--+|.++++..     ..+.|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence                             0111122211                     11224589999999999832     3379999


Q ss_pred             EECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEeCCCCeeeE----EeeCCCcceEEEEEcCCCCEE
Q 005913          532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD---EDGTIMMWDLASGRCVT----PLMGHTSCVWTLAYSCEGSLL  604 (670)
Q Consensus       532 wd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~---~dg~I~iwDl~~~~~~~----~~~~h~~~V~sl~~s~~g~~l  604 (670)
                      ||-. |..-..-....+.-.+++|-|.|..+++-.   .|+.|.+|.- +|-.-.    .+......|..++|+.++.+|
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCce
Confidence            9976 544333333334456899999999999853   5667999984 443222    222333458999999999999


Q ss_pred             EE---EECCCcEEEEeCCCC
Q 005913          605 AS---GSADCTVKLWDVTTS  621 (670)
Q Consensus       605 ~s---gs~Dg~I~iwd~~~~  621 (670)
                      ++   ......|++|-+.+-
T Consensus       305 Av~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeeecccccceEEEEEecCe
Confidence            88   445556999988764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.25  E-value=6.7e-05  Score=80.61  Aligned_cols=151  Identities=20%  Similarity=0.252  Sum_probs=95.5

Q ss_pred             CCeeEEEEcC-CCCEEEEE----EcCCc----EEEEECCCCcEEEE---EecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          506 SDVDCVRWHI-NCNYIATG----SSDKT----VRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       506 ~~v~~v~~~p-~~~~l~tg----s~dg~----I~iwd~~~~~~~~~---~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                      ....++.|+- +.+.+.+.    +.+|.    -.+|++..++..+.   -......+.|++++|+...|+.|+.||.|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3345666664 33444442    23343    34566654432211   1246778999999999999999999999999


Q ss_pred             EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccc-cccCCcccccccccCCCCCCeEEE
Q 005913          574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE-EKSGTNRLRSLKTLPTKSTPVYSL  652 (670)
Q Consensus       574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~l  652 (670)
                      ||...+...  +..+.-.++.++|+|+|.++++|+..|.+.+||+.-..-....- +...+...-.+..+-.+...+..+
T Consensus       286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~i  363 (545)
T PF11768_consen  286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHI  363 (545)
T ss_pred             EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhhee
Confidence            998776433  22344557889999999999999999999999987654332221 111111111223333455566777


Q ss_pred             EEecCC
Q 005913          653 QFSRRN  658 (670)
Q Consensus       653 ~fs~~~  658 (670)
                      .|++..
T Consensus       364 qW~~~~  369 (545)
T PF11768_consen  364 QWAPAP  369 (545)
T ss_pred             EeccCC
Confidence            777443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.24  E-value=0.00031  Score=75.24  Aligned_cols=264  Identities=12%  Similarity=0.107  Sum_probs=143.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCC----------CCCCCcccc---CCC--CCccceeee
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN----------DTTPREDII---GPN--GRKRSYTLY  417 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~----------~~~~~~~~~---~~~--~~~~~~~~~  417 (670)
                      .|+++.|+++..-||+|...|.|.||.+...+...........+          ....-.++.   .+.  ........+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48999999999999999999999999886532211000000000          000000010   011  112344555


Q ss_pred             ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--eC------CCccEeEEEEec-----CC---CEEEEE
Q 005913          418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KG------HNYPVWDVQFNP-----QG---HYFASS  481 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~------h~~~V~~l~~sp-----~g---~~l~s~  481 (670)
                      ....++|++++.| +=-+++.|..+|++.|.|++....+..-  ..      ....|+++.|+.     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            6668999999998 5569999999999999999866655441  11      234678888874     33   468889


Q ss_pred             ECCCcEEEEECC-C--Cc----eeEEecccCCCeeEEE-EcCC-C-------------------CEEEEEEcCCcEEEEE
Q 005913          482 SHDRTARIWSMD-R--IQ----PLRIMAGHLSDVDCVR-WHIN-C-------------------NYIATGSSDKTVRLWD  533 (670)
Q Consensus       482 s~dg~v~lwd~~-~--~~----~~~~~~~~~~~v~~v~-~~p~-~-------------------~~l~tgs~dg~I~iwd  533 (670)
                      ...|.+.+|.+. .  +.    .......+.+.|..+. ++.+ |                   +-+++...+..+|++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999999874 1  11    1111223445555443 3211 1                   2244445678899999


Q ss_pred             CCCCcEEEEEecCCCCeEEEEEc-----CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC----cceEEEEEcCCCCEE
Q 005913          534 VSSGECVRIFIGHRSMILSLAMS-----PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT----SCVWTLAYSCEGSLL  604 (670)
Q Consensus       534 ~~~~~~~~~~~~h~~~I~~l~~s-----p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~----~~V~sl~~s~~g~~l  604 (670)
                      .-+.+.........-....+.+-     ..+..|++-..+|.|+++.+..-+.+..+.-+.    ..+...+++++|..+
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence            98887766554222223334442     357788889999999999999988887776432    345567789999977


Q ss_pred             EEEECCCcEEEEeC
Q 005913          605 ASGSADCTVKLWDV  618 (670)
Q Consensus       605 ~sgs~Dg~I~iwd~  618 (670)
                      +-.+.. .+.++.+
T Consensus       322 ~~~gps-E~~l~sv  334 (395)
T PF08596_consen  322 YWTGPS-EIQLFSV  334 (395)
T ss_dssp             EE-SSS-EEEEEEE
T ss_pred             EEeCcc-cEEEEEE
Confidence            766543 3444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.18  E-value=0.00045  Score=74.88  Aligned_cols=177  Identities=12%  Similarity=0.043  Sum_probs=114.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCCc-------cEeEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ..++.++.+|.+..+|..+++.+..+.....       ....+.-+|  .+..+++++.+|.+..+|..+++.+..... 
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-  284 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-  284 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-
Confidence            3566677788898888888776544321100       011111222  345677788899999999999987755431 


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                       .....+.  ..+..+++++.+|.+..+|..+|+.+.....-. ....+..+  .+..|+.++.+|.|.+.|..+|+.+.
T Consensus       285 -~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        285 -GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             -CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence             1111222  246678888899999999999998765443211 11222222  25678889999999999999999887


Q ss_pred             EeeCCCcceEE-EEEcCCCCEEEEEECCCcEEEEeC
Q 005913          584 PLMGHTSCVWT-LAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       584 ~~~~h~~~V~s-l~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      +..-....+.+ ..+  .+..|+.++.||.|..++.
T Consensus       360 ~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        360 QQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            77544333332 222  2457888899999988764

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.16  E-value=1.1e-06  Score=93.94  Aligned_cols=197  Identities=20%  Similarity=0.365  Sum_probs=134.5

Q ss_pred             cCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce--eEEeeCCCccEeEEEEec-CCCEEEEEE----CCCcEEEEEC
Q 005913          422 GPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSS----HDRTARIWSM  492 (670)
Q Consensus       422 ~~V~~l~~sp~~~--~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp-~g~~l~s~s----~dg~v~lwd~  492 (670)
                      ..+.|++++-+.+  .+++|..+|.|.+-.++....  .....+|..+.++++|++ |...+|.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            4566777665443  688999999999988765432  344566788899999999 555566652    4568999999


Q ss_pred             CCC--ceeE--Eec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 005913          493 DRI--QPLR--IMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSP-DGRYMASG  565 (670)
Q Consensus       493 ~~~--~~~~--~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~sp-~g~~l~sg  565 (670)
                      .++  .|..  .|. +......+++|-.+.+.+++|...+.+.++|++... ....  -.+..+..+...| .+.++++-
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceecc
Confidence            876  2222  222 244567789999999999999999999999998332 2211  2234566778888 67788776


Q ss_pred             ECCCeEEEEe-CCCC-eeeEEeeCCC----cceEEEEEcCCC-CEEEEEEC-CCcEEEEeCCCC
Q 005913          566 DEDGTIMMWD-LASG-RCVTPLMGHT----SCVWTLAYSCEG-SLLASGSA-DCTVKLWDVTTS  621 (670)
Q Consensus       566 ~~dg~I~iwD-l~~~-~~~~~~~~h~----~~V~sl~~s~~g-~~l~sgs~-Dg~I~iwd~~~~  621 (670)
                      . ||.|-+|| .++- .++..+....    ..+..++|+|-. ..+++... .++|+.+++...
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            6 99999999 3332 2333332222    248899999943 34555554 478999998653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.11  E-value=1.9e-06  Score=92.22  Aligned_cols=239  Identities=13%  Similarity=0.206  Sum_probs=147.9

Q ss_pred             CCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          352 NGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       352 ~~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ..+.|++++-+  ..++++|..+|.|.+-.+....                          ........+|...+++++|
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h--------------------------dSs~E~tp~~ar~Ct~lAw  110 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH--------------------------DSSAEVTPGYARPCTSLAW  110 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcc--------------------------cccceeccccccccccccc
Confidence            35777777643  4578999999999998876411                          0122344578889999999


Q ss_pred             cCCC-CEEEEEe----CCCeEEEEeCCCCc--e--eEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          430 SPLG-DFILSSS----ADTTIRLWSTKLNA--N--LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       430 sp~~-~~L~s~s----~Dg~I~lwd~~~~~--~--~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      ++-. +.||+|-    .|..+.|||+.+.-  +  ...+.+ -.....+++|..+.+.+.+|...+.+.++|++... .+
T Consensus       111 neLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~  189 (783)
T KOG1008|consen  111 NELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DS  189 (783)
T ss_pred             ccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hh
Confidence            9854 4566653    36789999998761  1  112222 33345588999888899999999999999997421 11


Q ss_pred             EecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEE-CCCC-cEEEEEecCC----CCeEEEEEcCCCC-EEEEE-ECCCe
Q 005913          500 IMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD-VSSG-ECVRIFIGHR----SMILSLAMSPDGR-YMASG-DEDGT  570 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd-~~~~-~~~~~~~~h~----~~I~~l~~sp~g~-~l~sg-~~dg~  570 (670)
                      ...-....+..+...| .++|+++-. ||.|.+|| .++- ++++.+....    ..+..++|.|... .+++. -..++
T Consensus       190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t  268 (783)
T KOG1008|consen  190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT  268 (783)
T ss_pred             hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence            1122233556677778 778887765 99999999 4332 2222222222    2488999999432 34444 45688


Q ss_pred             EEEEeCCCC--------eeeEE------eeCCC--cceEEEEEcCCC--CEEEEEECCCcEEEEeC
Q 005913          571 IMMWDLASG--------RCVTP------LMGHT--SCVWTLAYSCEG--SLLASGSADCTVKLWDV  618 (670)
Q Consensus       571 I~iwDl~~~--------~~~~~------~~~h~--~~V~sl~~s~~g--~~l~sgs~Dg~I~iwd~  618 (670)
                      |+.+|+..-        .....      ++...  +.|.+..|++..  ....++...-++.-+++
T Consensus       269 Irlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V  334 (783)
T KOG1008|consen  269 IRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV  334 (783)
T ss_pred             EEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence            999998521        11111      11112  467777887754  23444444444444444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=0.00065  Score=73.73  Aligned_cols=225  Identities=15%  Similarity=0.134  Sum_probs=123.1

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      ....-....+.++|+|++++++ .+|.-.|+.....                            +.     ...+.-...
T Consensus        29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~----------------------------r~-----k~~G~g~~~   74 (443)
T PF04053_consen   29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW----------------------------RN-----KAFGSGLSF   74 (443)
T ss_dssp             EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT----------------------------EE-----EEEEE-SEE
T ss_pred             CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC----------------------------cc-----cccCceeEE
Confidence            3344457899999999999995 6777777773320                            01     112445567


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD  507 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~  507 (670)
                      +|.+.++ +|+-...++|.++.--.......++.. ..+..+-.   |..|+..+.+ .|.+||+.+++.++.+...  .
T Consensus        75 vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~  146 (443)
T PF04053_consen   75 VWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--A  146 (443)
T ss_dssp             EE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E
T ss_pred             EEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--C
Confidence            8998554 666666888999633223332333321 12333322   7777776654 8999999999999988743  4


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCC-----------cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSG-----------ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-----------~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      |..+.|++++++++..+.+ .+.+++....           .....+..-...|.+.+|..+  .++-.+.. .|+.  +
T Consensus       147 vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l  220 (443)
T PF04053_consen  147 VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--L  220 (443)
T ss_dssp             -EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--E
T ss_pred             CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--E
Confidence            8999999999999998755 6778765433           133333333567888999866  33333333 6666  4


Q ss_pred             CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      ..|.. ..+..-..+++=+.+.+..+.+.....|+.|..+.+...
T Consensus       221 ~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  221 VNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             ETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             EcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            44432 222223456777888887788999999999999887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=1.8e-05  Score=72.79  Aligned_cols=114  Identities=21%  Similarity=0.297  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCchhhcccccccccccCChhhHHHHHHHHHHHHhccc-
Q 005913            4 LQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSL-   82 (670)
Q Consensus         4 ~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l-   82 (670)
                      +-+|..|.+||.-|||+.|.++|.+|++..+. ..+.+.      .|-+.+... .+-.|-+.....+..|.+-|.++| 
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke-~~frvd------rivdq~~~a-~q~~Dl~aLr~~W~~l~~r~Fs~Le   77 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKE-KGFRVD------RIVDQLQQA-MQVYDLAALRDYWSYLERRLFSRLE   77 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhh-cCCcHH------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999987654 333222      112222111 123577888889999999999999 


Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH
Q 005913           83 DLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE  125 (670)
Q Consensus        83 d~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~  125 (670)
                      ++|++...++=-.+|-+...--|++++++.|.+||+|-+.+..
T Consensus        78 ~~y~~~~~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lq  120 (241)
T KOG1333|consen   78 DIYRPTIHKLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ  120 (241)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh
Confidence            7999999999999999999999999999999999999987743

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.07  E-value=0.0015  Score=72.19  Aligned_cols=179  Identities=14%  Similarity=0.033  Sum_probs=110.2

Q ss_pred             EEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-----------------------
Q 005913          427 ASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----------------------  482 (670)
Q Consensus       427 l~~sp~~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-----------------------  482 (670)
                      +=++|||+.+... -..+.+.+.|..+.+....+.... ....++++++|.++++.+                       
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            3355666655322 234566777777665554444322 224456666666665554                       


Q ss_pred             -----------------CCCcEEEEECCC-----CceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcE
Q 005913          483 -----------------HDRTARIWSMDR-----IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC  539 (670)
Q Consensus       483 -----------------~dg~v~lwd~~~-----~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~  539 (670)
                                       .+++|.++|..+     ...+..+. -......+.++|||+++++++ .+.+|.++|+.+.+.
T Consensus       277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence                             234577777776     23334333 335567899999999988765 488999999987552


Q ss_pred             ------------EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC----------CeeeEEeeCCCcceE----
Q 005913          540 ------------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHTSCVW----  593 (670)
Q Consensus       540 ------------~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~----------~~~~~~~~~h~~~V~----  593 (670)
                                  +....--.+ -...+|.++|....|..-|..|..|++.+          ...+..+.-|-.+..    
T Consensus       356 ~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~  434 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS  434 (635)
T ss_pred             hhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence                        333332223 34678999999888899999999999876          234444443332221    


Q ss_pred             -EEEEcCCCCEEEEEE
Q 005913          594 -TLAYSCEGSLLASGS  608 (670)
Q Consensus       594 -sl~~s~~g~~l~sgs  608 (670)
                       +=.-.|+|++|++..
T Consensus       435 ~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        435 MGETKEADGKWLVSLN  450 (635)
T ss_pred             CCCcCCCCCCEEEEcc
Confidence             122356777777764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.06  E-value=0.00012  Score=80.73  Aligned_cols=224  Identities=14%  Similarity=0.167  Sum_probs=132.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      +++++|+|..-.||.|-.-|.+.+|...+                            .........|..+|..+.||++|
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~----------------------------~e~htv~~th~a~i~~l~wS~~G  113 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT----------------------------TETHTVVETHPAPIQGLDWSHDG  113 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCC----------------------------ceeeeeccCCCCCceeEEecCCC
Confidence            67899999999999999999999999764                            22344456799999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcee----------------EEee-----------------CCCccEe-EEEE--------
Q 005913          434 DFILSSSADTTIRLWSTKLNANL----------------VCYK-----------------GHNYPVW-DVQF--------  471 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~----------------~~~~-----------------~h~~~V~-~l~~--------  471 (670)
                      ..++++..-|.|.+|.......+                .+++                 +....+- -.-|        
T Consensus       114 ~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs  193 (1416)
T KOG3617|consen  114 TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERS  193 (1416)
T ss_pred             CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcc
Confidence            99999999999999986521111                1111                 0000000 0111        


Q ss_pred             -----ecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC------------
Q 005913          472 -----NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV------------  534 (670)
Q Consensus       472 -----sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~------------  534 (670)
                           .|+|..|+.++.+|+|+-.|-.. ......+.. +. ..+-|++-..-+.+...+-++.++-+            
T Consensus       194 ~~ksgv~~g~~F~~~~~~GtVyyvdq~g-~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~v  270 (1416)
T KOG3617|consen  194 DEKSGVPKGTEFLFAGKSGTVYYVDQNG-RQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAV  270 (1416)
T ss_pred             ccccCCCCCcEEEEEcCCceEEEEcCCC-cEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhh
Confidence                 24677888888899888777432 333222211 11 11122222222222222211111111            


Q ss_pred             ----CCCcE---------EEEEe-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-------eeeEEee-
Q 005913          535 ----SSGEC---------VRIFI-------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-------RCVTPLM-  586 (670)
Q Consensus       535 ----~~~~~---------~~~~~-------~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-------~~~~~~~-  586 (670)
                          +.|..         -..+.       .....+.|++++..+..|+.|...|.+.+|--...       .-...+. 
T Consensus       271 k~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~  350 (1416)
T KOG3617|consen  271 KVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNG  350 (1416)
T ss_pred             hhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecC
Confidence                00000         00000       12346999999999999999999999999953221       1122232 


Q ss_pred             --CCCcceEEEEEcCCCCEEEEEE
Q 005913          587 --GHTSCVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       587 --~h~~~V~sl~~s~~g~~l~sgs  608 (670)
                        ...+.|+.+.|+|--+.++.-+
T Consensus       351 ~~e~~g~I~~i~Wg~~k~~~avn~  374 (1416)
T KOG3617|consen  351 KRESLGKISLIRWGPIKSTAAVNT  374 (1416)
T ss_pred             chhhccceEEEEeccccchhhhhh
Confidence              2347899999998554444433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.05  E-value=0.00091  Score=72.34  Aligned_cols=174  Identities=16%  Similarity=0.161  Sum_probs=111.1

Q ss_pred             EEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE---CC-CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE
Q 005913          445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HD-RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI  520 (670)
Q Consensus       445 I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s---~d-g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l  520 (670)
                      +.+-|-+ +.....+......+..-.|+|++..++..+   .. ..+.++++++++...... ..+.-..-+|+|+|+.|
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l  252 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence            3333333 444444444556677788999988765553   22 469999999887666655 33444567899999988


Q ss_pred             EEEE-cCC--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEeCCCCeeeEEeeCCCcceEE
Q 005913          521 ATGS-SDK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-DG--TIMMWDLASGRCVTPLMGHTSCVWT  594 (670)
Q Consensus       521 ~tgs-~dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~-dg--~I~iwDl~~~~~~~~~~~h~~~V~s  594 (670)
                      +.+. .||  .|+++|+.+++..+ +....+.-+.-.|+|||++|+-.++ .|  .|.++|+..+.. ..+....+.-..
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~  330 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN  330 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence            7654 455  46777888777444 5444444457789999999887654 34  466667665544 334333332236


Q ss_pred             EEEcCCCCEEEEEECC-Cc--EEEEeCCCCc
Q 005913          595 LAYSCEGSLLASGSAD-CT--VKLWDVTTST  622 (670)
Q Consensus       595 l~~s~~g~~l~sgs~D-g~--I~iwd~~~~~  622 (670)
                      -.|||||.+|+..+.. |.  |.+.++.++.
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            7899999998888754 44  5556555544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.02  E-value=0.0031  Score=62.94  Aligned_cols=198  Identities=15%  Similarity=0.163  Sum_probs=116.6

Q ss_pred             eeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          416 LYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      .+.+-...+.+++|+|+.+ ++++....+.|...+.. ++.+..+.-. ....-.|++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            3445556799999999866 55666778888888875 6777666543 3457789998888777766678999999884


Q ss_pred             CCc------eeEEec-----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC---CcEEEEE--e------cCCCCeE
Q 005913          494 RIQ------PLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIF--I------GHRSMIL  551 (670)
Q Consensus       494 ~~~------~~~~~~-----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~---~~~~~~~--~------~h~~~I~  551 (670)
                      ...      ....+.     .+...+..++|.|.++.|+++-...-..+|.+..   ...+...  .      .....+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      111121     2445689999999988888888777777776653   2222111  1      1234578


Q ss_pred             EEEEcCC-CCEEEEEECCCeEEEEeCCCCeeeEEeeCCC---------cceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913          552 SLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLW  616 (670)
Q Consensus       552 ~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~---------~~V~sl~~s~~g~~l~sgs~Dg~I~iw  616 (670)
                      +++++|. |.+++.......|..+| .+|+.+..+.-..         ...-.++|.++|++.+++ .-+...+|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            9999995 56777788888999999 7788776654222         235679999998755544 55555444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.02  E-value=0.00035  Score=76.24  Aligned_cols=264  Identities=15%  Similarity=0.094  Sum_probs=142.0

Q ss_pred             cccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       328 ~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      ....+++++........++.-+..+.+..+..|++..++|+|+..|.|.|+.++.......                   
T Consensus        53 S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~-------------------  113 (726)
T KOG3621|consen   53 SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL-------------------  113 (726)
T ss_pred             ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc-------------------
Confidence            3456666666655555555555666677788999999999999999999998875211000                   


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEecCCCEEEEEEC
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~  483 (670)
                         ......-..|...|++++|++++..+.+|...|.|.+-.+.+.    ...+.+....++|..+.+. ++..+++...
T Consensus       114 ---~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~  189 (726)
T KOG3621|consen  114 ---DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT  189 (726)
T ss_pred             ---eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh
Confidence               0000111238899999999999999999999999999888762    1122233345667666665 3333333332


Q ss_pred             CCcEEEEECCCCceeEEec-ccCC--CeeEEEEcC----CCCEEEEEEcCCcEEEEECC-CCcEEEEEe-----------
Q 005913          484 DRTARIWSMDRIQPLRIMA-GHLS--DVDCVRWHI----NCNYIATGSSDKTVRLWDVS-SGECVRIFI-----------  544 (670)
Q Consensus       484 dg~v~lwd~~~~~~~~~~~-~~~~--~v~~v~~~p----~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~-----------  544 (670)
                        ...+++++.....++=. ...+  ..-++-|..    +...|+++ .-| .|+|... .|..+++..           
T Consensus       190 --r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-RPG-~RlWead~~G~V~~Thqfk~ala~~p~p  265 (726)
T KOG3621|consen  190 --RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-RPG-LRLWEADFAGEVIKTHQFKDALARPPAP  265 (726)
T ss_pred             --hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-cCC-CceEEeecceeEEEeeehhhhhccCCCC
Confidence              23455554332111100 1112  222333322    22344443 333 6777664 344433322           


Q ss_pred             --cCCC-----------CeEEEEEcC----CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE
Q 005913          545 --GHRS-----------MILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG  607 (670)
Q Consensus       545 --~h~~-----------~I~~l~~sp----~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg  607 (670)
                        .+..           .-..+.|..    ++..+.+-+.-| |+|+|..+.+.+.-.. ....|-.++.  .|+-|++-
T Consensus       266 ~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se-~~~DI~dVs~--~~neiFvL  341 (726)
T KOG3621|consen  266 EIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSE-GGHDILDVSH--CGNEIFVL  341 (726)
T ss_pred             cccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeec-CCCceeEEee--cCceEEEE
Confidence              0000           001111111    122333434444 8888887665543321 2233444443  45566666


Q ss_pred             ECCCcEEEEeCCCCc
Q 005913          608 SADCTVKLWDVTTST  622 (670)
Q Consensus       608 s~Dg~I~iwd~~~~~  622 (670)
                      ..||.+++..+.+..
T Consensus       342 ~~d~~l~~~sv~s~q  356 (726)
T KOG3621|consen  342 NLDRGLKVESVASRQ  356 (726)
T ss_pred             ecCCceeEEEeehhH
Confidence            667777777766543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.00  E-value=0.00091  Score=71.63  Aligned_cols=201  Identities=13%  Similarity=0.155  Sum_probs=120.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------------------------------------------eEEe
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------------------------------------------LVCY  459 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-------------------------------------------~~~~  459 (670)
                      .|+.++|+++..-|++|...|.|.||.+...+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            588999999999999999999999986432110                                           1112


Q ss_pred             eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--c------cCCCeeEEEEcC-----CC---CEEEEE
Q 005913          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--G------HLSDVDCVRWHI-----NC---NYIATG  523 (670)
Q Consensus       460 ~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~--~------~~~~v~~v~~~p-----~~---~~l~tg  523 (670)
                      ....++|++++.|.-| ++|+|..+|.+.|.|++....+..-.  .      ....|+++.|..     ++   -.+++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2346789999998554 89999999999999998877665422  1      223578888862     22   578999


Q ss_pred             EcCCcEEEEECCC---CcE----EEEEecCCCCeEEEE-EcCC-C-------------------CEEEEEECCCeEEEEe
Q 005913          524 SSDKTVRLWDVSS---GEC----VRIFIGHRSMILSLA-MSPD-G-------------------RYMASGDEDGTIMMWD  575 (670)
Q Consensus       524 s~dg~I~iwd~~~---~~~----~~~~~~h~~~I~~l~-~sp~-g-------------------~~l~sg~~dg~I~iwD  575 (670)
                      +..|.+.+|.+.-   +..    ......+.++|..|. |+.+ |                   .-++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999998751   211    122224556666665 3221 1                   1234444567899999


Q ss_pred             CCCCeeeEEeeCCCcceEEEEE-----cCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          576 LASGRCVTPLMGHTSCVWTLAY-----SCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       576 l~~~~~~~~~~~h~~~V~sl~~-----s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      ..+.+.........-....+++     ...+..|++-..+|.|+++.+..-..+
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence            9988776655433233334455     235678899999999999999886554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.00  E-value=0.011  Score=64.58  Aligned_cols=241  Identities=17%  Similarity=0.138  Sum_probs=132.0

Q ss_pred             EEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          354 LNCASISQDGSLVAGG-FSDS----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       354 V~~l~fs~d~~~La~g-~~dg----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      +....+||||+++|.+ +..|    .|+++|+.+...                           ....+..  ..-.++.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~---------------------------l~d~i~~--~~~~~~~  176 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF---------------------------LPDGIEN--PKFSSVS  176 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE---------------------------EEEEEEE--EESEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC---------------------------cCCcccc--cccceEE
Confidence            4467899999999966 2333    399999876211                           0001111  1112389


Q ss_pred             EcCCCCEEEEEeCCC-----------eEEEEeCCCCce--eEEeeCCCcc--EeEEEEecCCCEEEEEECC----CcEEE
Q 005913          429 FSPLGDFILSSSADT-----------TIRLWSTKLNAN--LVCYKGHNYP--VWDVQFNPQGHYFASSSHD----RTARI  489 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg-----------~I~lwd~~~~~~--~~~~~~h~~~--V~~l~~sp~g~~l~s~s~d----g~v~l  489 (670)
                      |.++++.|+....+.           .|+.|.+.+...  ...+......  ...+..++++++++..+..    ..+.+
T Consensus       177 W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~  256 (414)
T PF02897_consen  177 WSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL  256 (414)
T ss_dssp             ECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred             EeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence            999988776654332           378888877654  3566654443  5678889999997765432    34777


Q ss_pred             EECCCC----ceeEEecccCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcE---EEEEecCCCCeEEEEEcCCC
Q 005913          490 WSMDRI----QPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPDG  559 (670)
Q Consensus       490 wd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~g  559 (670)
                      .++...    .....+......+....-+.++.+++...   ..+.|...++.+...   ...+..+...+.-..+...+
T Consensus       257 ~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~  336 (414)
T PF02897_consen  257 LDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK  336 (414)
T ss_dssp             EECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred             EeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence            788764    23344443444444433333444444433   245777788876652   33555565533333333445


Q ss_pred             CEEEEE-ECCC--eEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEE-EEE-E--CCCcEEEEeCCCCcc
Q 005913          560 RYMASG-DEDG--TIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLL-ASG-S--ADCTVKLWDVTTSTK  623 (670)
Q Consensus       560 ~~l~sg-~~dg--~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l-~sg-s--~Dg~I~iwd~~~~~~  623 (670)
                      .+|+.. -.++  .|+++|+..+.....+.. -.+.|..+...++++.+ ++. |  .-+++..||+.+++.
T Consensus       337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  337 DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            555543 3343  588999984444444443 33556666655655533 222 2  236788888887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.99  E-value=0.0026  Score=68.91  Aligned_cols=175  Identities=14%  Similarity=0.147  Sum_probs=95.4

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC-CC
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM-DR  494 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~-~~  494 (670)
                      +.+.++.|+.+ ..|++...||+++++|+....      .+....-....+....+..+|-.++  ..++.+.+..- ..
T Consensus        81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~  157 (410)
T PF04841_consen   81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDE  157 (410)
T ss_pred             CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccc
Confidence            89999999875 456666789999999987332      0111111122222233333553333  33444444432 21


Q ss_pred             CceeEEec---ccCC------CeeE-EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          495 IQPLRIMA---GHLS------DVDC-VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       495 ~~~~~~~~---~~~~------~v~~-v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      ....+.+.   +...      .... ..++.+....+....++.+.+.+-...+.    ....+++..|++||+|+++|.
T Consensus       158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iAl  233 (410)
T PF04841_consen  158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIAL  233 (410)
T ss_pred             cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEEE
Confidence            11111111   0000      0000 22334444444444555555444322211    123468999999999999999


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCC-CcceEEEEEcCCCCE
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSL  603 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h-~~~V~sl~~s~~g~~  603 (670)
                      -..+|.+.+.+..-.+.+..+... ......+.|.-++..
T Consensus       234 ~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav  273 (410)
T PF04841_consen  234 FTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV  273 (410)
T ss_pred             EECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence            999999999987766666665543 345677888765443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.0005  Score=74.36  Aligned_cols=191  Identities=19%  Similarity=0.185  Sum_probs=119.7

Q ss_pred             eecCccCEEEEEEcCCCCEEEEEe---CC-CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCc--EEE
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSS---AD-TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRT--ARI  489 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s---~D-g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~--v~l  489 (670)
                      +..-...+..-+|+|++..++..+   .. ..+.++++.++....... ..+.-..-+|+|||+.++.+. .||.  |++
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            333445677788999998765432   22 469999999887655443 222233568999999876654 5564  555


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      .|+......+ +....+.-..-.|+|+|++|+..+.. |  .|.++|...+... .+....+.-..-.|||||++|+..+
T Consensus       267 ~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         267 MDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEEEe
Confidence            6777665333 43333333466899999999877643 3  5777777666553 3433434334788999999998876


Q ss_pred             C-CCe--EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913          567 E-DGT--IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC  611 (670)
Q Consensus       567 ~-dg~--I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg  611 (670)
                      . +|.  |.+.|+.++..+..+ .+......-+|.++|..++..+..+
T Consensus       345 ~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         345 SSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             ccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence            4 344  777777666543322 2333344567788887776655443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.005  Score=63.63  Aligned_cols=184  Identities=13%  Similarity=0.173  Sum_probs=117.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee----C-CCccEeEEEEecCCCEEEEEEC---------CCcEE
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK----G-HNYPVWDVQFNPQGHYFASSSH---------DRTAR  488 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~----~-h~~~V~~l~~sp~g~~l~s~s~---------dg~v~  488 (670)
                      .+.++..-..+..|+++. .| +.+++.+++..+..+.    + .....+++...|+|.+.++...         -..-.
T Consensus        67 ~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~  144 (307)
T COG3386          67 GFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGS  144 (307)
T ss_pred             CcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcce
Confidence            334444444445555553 33 6777776555522221    1 1234567888999987666544         11224


Q ss_pred             EEECC-CCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-CcEEEEECCC--C----cE-EEEEecCCCCeEEEEEcCCC
Q 005913          489 IWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSS--G----EC-VRIFIGHRSMILSLAMSPDG  559 (670)
Q Consensus       489 lwd~~-~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g~I~iwd~~~--~----~~-~~~~~~h~~~I~~l~~sp~g  559 (670)
                      +|-++ .+..++.+..+...-+.++|+|+++.++.+.+. +.|+-|++..  +    +. ...+....+..-.++...+|
T Consensus       145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG  224 (307)
T COG3386         145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG  224 (307)
T ss_pred             EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence            55555 567777777777788999999999887776554 7788887652  1    11 12222344566678888888


Q ss_pred             CEEEEEECCC-eEEEEeCCCCeeeEEeeCCCcceEEEEEc-CCCCEEEEEEC
Q 005913          560 RYMASGDEDG-TIMMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSA  609 (670)
Q Consensus       560 ~~l~sg~~dg-~I~iwDl~~~~~~~~~~~h~~~V~sl~~s-~~g~~l~sgs~  609 (670)
                      .+.+++..+| .|.+|+.. |+.+..+.-+...+++++|- ++.+.|+..+.
T Consensus       225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         225 NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            8876555554 99999988 99999888776788889984 44555544443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.87  E-value=0.018  Score=59.22  Aligned_cols=248  Identities=13%  Similarity=0.078  Sum_probs=146.7

Q ss_pred             EEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          355 NCASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       355 ~~l~fs~d~~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      -.+..|||++.+++++          ..-.|.+||..+........               .+...    +....  ...
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~---------------iP~k~----R~~~~--~~~   97 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE---------------IPPKP----RAQVV--PYK   97 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE---------------ETTS-----B--BS----G
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe---------------cCCcc----hheec--ccc
Confidence            3467899999988642          33459999988743222111               01100    00000  112


Q ss_pred             EEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEe
Q 005913          425 YSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIM  501 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-~~~~~~~~  501 (670)
                      ..++++.++++++...  --.+|.|.|+...+.+..+....  ++.+--+ ....|.+-|.||++.-..++ .++..+..
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec-CCCceEEEecCCceEEEEECCCCCEeEee
Confidence            2357888999887664  34679999999888877766433  2222222 23468899999999999987 55554332


Q ss_pred             c----ccCC-CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE--EEecC----------CCCeEEEEEcCCCCEEEE
Q 005913          502 A----GHLS-DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR--IFIGH----------RSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       502 ~----~~~~-~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~h----------~~~I~~l~~sp~g~~l~s  564 (670)
                      .    .... -+..-++...+..++..+-+|.|+-.|+.......  .+.--          .+.-.-+++++..+.|++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence            1    1111 12233444455556667789999999887654321  11100          122345788876655555


Q ss_pred             EE---CCC-------eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEE-ECCCcEEEEeCCCCcccccc
Q 005913          565 GD---EDG-------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASG-SADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       565 g~---~dg-------~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sg-s~Dg~I~iwd~~~~~~~~~~  627 (670)
                      .-   .+|       .|.++|+.+++.+.++.. ..++.+|..+.+.. +|++. ..++.+.|||..+++.....
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            32   122       488999999999998863 24678999998765 66554 45799999999998765443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.87  E-value=2.1e-05  Score=49.11  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHH
Q 005913            4 LQVVEFVATYLKKKGFSEAENALQAEI   30 (670)
Q Consensus         4 ~~~~~~v~~yl~~~~~~~~e~~~~~e~   30 (670)
                      ++||++|.+||.++||..|.++|++|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999995

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.00016  Score=78.90  Aligned_cols=145  Identities=13%  Similarity=0.168  Sum_probs=104.9

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      |...|.--+++..+++++.|+.-|.+++|+-.++.....- .+..+.+..+..+++..++|.|+..|.|.++-+....+-
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            4566777778888999999999999999998766554332 234455667778888889999999999999988764432


Q ss_pred             EEe------cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          499 RIM------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       499 ~~~------~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      ...      ..|...|+|++|++|+..+++|.+.|.|.+-.+.+..    ....+..-.+.|..+... ++..|++.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt  187 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST  187 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh
Confidence            211      2367889999999999999999999999998877621    122233345667777665 33344433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=0.0018  Score=70.33  Aligned_cols=182  Identities=14%  Similarity=0.129  Sum_probs=101.2

Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~  495 (670)
                      .+....-....++++|+|++++++ .||.-.|+.....+...     .+....+.|.+.+ .+|+-...++|.++.--..
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence            344445567899999999999985 46788888854444332     2345568899854 5777777889999632222


Q ss_pred             ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                      .....+... ..+..+-.   |..|+..+.+ .|.+||+.+++.++.+...  +|..+.|+++|.+++..+.+ .+.|++
T Consensus       100 ~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  100 EVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             -TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             ccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            222233322 23444432   7777776544 8999999999999988643  48999999999999998865 577777


Q ss_pred             CCCC-----------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913          576 LASG-----------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (670)
Q Consensus       576 l~~~-----------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i  615 (670)
                      ....           ..+..+..-...|.+.+|..+  .++-.+.. .++-
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence            5433           022233222467888888755  44333333 6665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.79  E-value=0.015  Score=58.05  Aligned_cols=198  Identities=12%  Similarity=0.164  Sum_probs=110.3

Q ss_pred             eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +.+-...+..++|+|+.+ ++|+....+.|...++++  .                         ......+.+ .+-.-
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G--~-------------------------vlr~i~l~g-~~D~E   68 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG--K-------------------------VLRRIPLDG-FGDYE   68 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------------------------EEEEEE-SS--SSEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC--C-------------------------EEEEEeCCC-CCCce
Confidence            344556699999999755 666777777777666542  0                         001111222 35677


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eEEee-----CCCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNAN------LVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~------~~~~~-----~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      +|++..++.++++.-.++.+.++++.....      ...+.     .++..+-.++|.|.+..|+++-...-..+|.+..
T Consensus        69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            888987777777666689999998843211      11222     2456689999999888888887776666776653


Q ss_pred             ---CceeEEe--------cccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEecCC---------CCeEEE
Q 005913          495 ---IQPLRIM--------AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSL  553 (670)
Q Consensus       495 ---~~~~~~~--------~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---------~~I~~l  553 (670)
                         ...+...        ......+.+++++|.. ++++.+...+.|..+| .+|+.+..+.-..         ...-.|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI  227 (248)
T PF06977_consen  149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI  227 (248)
T ss_dssp             TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred             ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence               2222111        1244568899999865 4555566778899999 6787776554222         246789


Q ss_pred             EEcCCCCEEEEEECCCeEEEE
Q 005913          554 AMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       554 ~~sp~g~~l~sg~~dg~I~iw  574 (670)
                      +|.++|++.+ .++-+..++|
T Consensus       228 a~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  228 AFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             EE-TT--EEE-EETTTEEEEE
T ss_pred             EECCCCCEEE-EcCCceEEEe
Confidence            9999985544 4455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.78  E-value=0.023  Score=63.30  Aligned_cols=182  Identities=15%  Similarity=0.187  Sum_probs=113.3

Q ss_pred             CCCeEEEEeCCCCceeEEeeCCCc--------------------cEe-EEEEecCCCEEEEEECCC--------------
Q 005913          441 ADTTIRLWSTKLNANLVCYKGHNY--------------------PVW-DVQFNPQGHYFASSSHDR--------------  485 (670)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~--------------------~V~-~l~~sp~g~~l~s~s~dg--------------  485 (670)
                      .+|.+..+|..+++.+-.+.....                    .+| ...+.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            467888899988887766654211                    111 233444456777776655              


Q ss_pred             ----cEEEEECCCCceeEEecccCCCe------eEEEEc----CCCC---EEEEEEcCCcEEEEECCCCcEEEEEecCCC
Q 005913          486 ----TARIWSMDRIQPLRIMAGHLSDV------DCVRWH----INCN---YIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (670)
Q Consensus       486 ----~v~lwd~~~~~~~~~~~~~~~~v------~~v~~~----p~~~---~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  548 (670)
                          .+.-+|..+++....+.......      ....+.    -++.   .+++++.+|.+...|..+|+.+......  
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--  330 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--  330 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence                79999999999887764211111      000111    1333   6788889999999999999998765421  


Q ss_pred             CeEEEEEcCCCCEEEEE------------------ECCCeEEEEeCCCCeeeEEeeCCC--------cceEEEEEcCCCC
Q 005913          549 MILSLAMSPDGRYMASG------------------DEDGTIMMWDLASGRCVTPLMGHT--------SCVWTLAYSCEGS  602 (670)
Q Consensus       549 ~I~~l~~sp~g~~l~sg------------------~~dg~I~iwDl~~~~~~~~~~~h~--------~~V~sl~~s~~g~  602 (670)
                       ...++.+|  ..++.+                  ..+|.+.-.|+.+|+.+-+.....        .+...-.....+.
T Consensus       331 -~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~  407 (488)
T cd00216         331 -EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN  407 (488)
T ss_pred             -ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC
Confidence             11233444  233332                  246889999999998776654321        1111111112567


Q ss_pred             EEEEEECCCcEEEEeCCCCcccccc
Q 005913          603 LLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       603 ~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      .|+.++.||.|+.+|..+++.....
T Consensus       408 ~v~~g~~dG~l~ald~~tG~~lW~~  432 (488)
T cd00216         408 LVFAGAADGYFRAFDATTGKELWKF  432 (488)
T ss_pred             eEEEECCCCeEEEEECCCCceeeEE
Confidence            8999999999999999998766543

The alignment model contains an 8-bladed beta-propeller.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.75  E-value=0.0025  Score=72.94  Aligned_cols=142  Identities=15%  Similarity=0.175  Sum_probs=98.3

Q ss_pred             CCEEEEE-eCCCeEEEEeCCCCceeEEeeCCCcc-EeEEEEec-----CCCEEEEEECCCcEEEEECCCCc-eeEEec--
Q 005913          433 GDFILSS-SADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ-PLRIMA--  502 (670)
Q Consensus       433 ~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~l~~sp-----~g~~l~s~s~dg~v~lwd~~~~~-~~~~~~--  502 (670)
                      .++|+.. .....|+-.|+++++.+..++.|... |.+++-..     ....-+.|-.+..+..||.+-.. .+..-.  
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444433 34577999999999999999887643 55443321     13446677788899999987532 211111  


Q ss_pred             --ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          503 --GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       503 --~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                        .......|++-+.+| +||+|+.+|.||+||--..+....+.+-..+|..|..+.||+||++.+ +..|.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence              233457788766555 799999999999999543344445556788999999999999987665 567888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.73  E-value=0.02  Score=63.78  Aligned_cols=189  Identities=12%  Similarity=0.164  Sum_probs=115.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc--EeEEEEec--CCCEEEEEE---------CCCcEEEEECCCCceeEE
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYP--VWDVQFNP--QGHYFASSS---------HDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--V~~l~~sp--~g~~l~s~s---------~dg~v~lwd~~~~~~~~~  500 (670)
                      ..++.++.+|.|+-+|.++++.+-.+......  -..+.-+|  .+..++.++         .++.+..+|..+++.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            67778888999999999999988776543221  01111122  123444543         367899999999988876


Q ss_pred             ecccCCC--------------------e-eEEEEcCCCCEEEEEEcCC------------------cEEEEECCCCcEEE
Q 005913          501 MAGHLSD--------------------V-DCVRWHINCNYIATGSSDK------------------TVRLWDVSSGECVR  541 (670)
Q Consensus       501 ~~~~~~~--------------------v-~~v~~~p~~~~l~tgs~dg------------------~I~iwd~~~~~~~~  541 (670)
                      +......                    + ...++.+.+..+++++.++                  .|.-+|..+|+.+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            6532110                    1 1234455667788887665                  79999999999988


Q ss_pred             EEecCCCCeE------EEEEc----CCCC---EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE-
Q 005913          542 IFIGHRSMIL------SLAMS----PDGR---YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-  607 (670)
Q Consensus       542 ~~~~h~~~I~------~l~~s----p~g~---~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg-  607 (670)
                      .+........      ...+.    -+|.   .++.++.+|.+...|..+|+.+-.....   ...++.+|  ..++.+ 
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~  345 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGA  345 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEcc
Confidence            7652211110      01111    1343   6788889999999999999988664321   01123333  222222 


Q ss_pred             -----------------ECCCcEEEEeCCCCcccccc
Q 005913          608 -----------------SADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       608 -----------------s~Dg~I~iwd~~~~~~~~~~  627 (670)
                                       ..+|.|.-.|..+++.....
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~  382 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEK  382 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEe
Confidence                             23567777777777665544

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.72  E-value=0.034  Score=58.31  Aligned_cols=273  Identities=12%  Similarity=0.060  Sum_probs=128.2

Q ss_pred             EEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCEEEEEEcCCCCE
Q 005913          358 SISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDF  435 (670)
Q Consensus       358 ~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~  435 (670)
                      +|.+||+.|+ ++..||.-.+|.++-.                           ......+..+. ....+..++|+++.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~---------------------------t~~i~QLTdg~g~~~~g~~~s~~~~~   94 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLA---------------------------TGEITQLTDGPGDNTFGGFLSPDDRA   94 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETT---------------------------T-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcc---------------------------cCEEEECccCCCCCccceEEecCCCe
Confidence            5678886655 5555777666654421                           11223333322 22224667888888


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEE----------------------CCCcEEEEE
Q 005913          436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSS----------------------HDRTARIWS  491 (670)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s----------------------~dg~v~lwd  491 (670)
                      ++-.....+|+-.|+.+.+....+.....-+-...|..  ++..++-.-                      -.+.|.-.|
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            87666667899999999888777777666665566653  555544321                      123466667


Q ss_pred             CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCC-----cEEEEECCC-CcEEEEEecCC--CCeEEEEEcCCCCEEE
Q 005913          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSS-GECVRIFIGHR--SMILSLAMSPDGRYMA  563 (670)
Q Consensus       492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~-~~~~~~~~~h~--~~I~~l~~sp~g~~l~  563 (670)
                      +.+++....+. -...+..+.|+|....+++=+..|     .-|||-+++ |...+.+..+.  ..+..=-|.|||..|.
T Consensus       175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  175 LKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             TTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred             CCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence            77776655554 345677889998765555543332     236665543 33333333332  2344456899998766


Q ss_pred             EEE-----CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC----------------cEEEEeCCCCc
Q 005913          564 SGD-----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC----------------TVKLWDVTTST  622 (670)
Q Consensus       564 sg~-----~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg----------------~I~iwd~~~~~  622 (670)
                      --+     .+..|.-+|+.++........  .....+--++||++++.=+.|.                -|.++++..+.
T Consensus       254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~  331 (386)
T PF14583_consen  254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR  331 (386)
T ss_dssp             EEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred             EEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence            522     345688888888764332221  1334566688999887656553                34455655433


Q ss_pred             cccccccccCCcccccccccCCCCC-CeEEEEEecCCcEEEEeeC
Q 005913          623 KVLKTEEKSGTNRLRSLKTLPTKST-PVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~fs~~~~~La~gs~  666 (670)
                      ....... .  ..+   ..+.++.. .=....|||||+.++..|.
T Consensus       332 ~~~l~~h-~--~sw---~v~~~~~q~~hPhp~FSPDgk~VlF~Sd  370 (386)
T PF14583_consen  332 FRKLARH-D--TSW---KVLDGDRQVTHPHPSFSPDGKWVLFRSD  370 (386)
T ss_dssp             EEEEEE-------------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred             eeeeeec-c--Ccc---eeecCCCccCCCCCccCCCCCEEEEECC
Confidence            2111000 0  000   01111111 1256799999998876664

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.70  E-value=0.017  Score=61.61  Aligned_cols=244  Identities=17%  Similarity=0.165  Sum_probs=127.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC-ccCEEEEEE
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASF  429 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~  429 (670)
                      ...+....|||||+.+|.. .++.|.++++...........  +.      ..+.  ++...-+  .... -+.-.++.|
T Consensus        42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~d--g~------~~i~--nG~~dwv--yeEEv~~~~~~~~W  108 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTD--GE------PGIY--NGVPDWV--YEEEVFDRRSAVWW  108 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES----T------TTEE--ESB--HH--HHHHTSSSSBSEEE
T ss_pred             ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccc--cc------eeEE--cCcccee--ccccccccccceEE
Confidence            5678899999999999988 567899998765422211110  00      0000  0000000  0000 011234678


Q ss_pred             cCCCCEEEEEeCC-C-----------------------------------eEEEEeCCCCceeE-Ee----eCCCccEeE
Q 005913          430 SPLGDFILSSSAD-T-----------------------------------TIRLWSTKLNANLV-CY----KGHNYPVWD  468 (670)
Q Consensus       430 sp~~~~L~s~s~D-g-----------------------------------~I~lwd~~~~~~~~-~~----~~h~~~V~~  468 (670)
                      |||+++|+....| .                                   .+.++++.+++... ..    .....-+..
T Consensus       109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~  188 (353)
T PF00930_consen  109 SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTR  188 (353)
T ss_dssp             -TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEE
T ss_pred             CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccc
Confidence            8888877755432 1                                   13344555444321 11    123455788


Q ss_pred             EEEecCCCEEEEEE--CC---CcEEEEECCCCceeEEecc----cCCCeeEEEEc-CCCCE-EEEEEcCCc--EEEEECC
Q 005913          469 VQFNPQGHYFASSS--HD---RTARIWSMDRIQPLRIMAG----HLSDVDCVRWH-INCNY-IATGSSDKT--VRLWDVS  535 (670)
Q Consensus       469 l~~sp~g~~l~s~s--~d---g~v~lwd~~~~~~~~~~~~----~~~~v~~v~~~-p~~~~-l~tgs~dg~--I~iwd~~  535 (670)
                      +.|.+++..|+..-  .+   ..+.++|..++........    -........|. +++.. +.....+|.  |.+++..
T Consensus       189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~  268 (353)
T PF00930_consen  189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD  268 (353)
T ss_dssp             EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred             ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence            99999988444443  22   2466677776654433321    11223355554 66554 444556664  5566665


Q ss_pred             CCcEEEEEecCCCCeEE-EEEcCCCCEEE-EEECC----CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE
Q 005913          536 SGECVRIFIGHRSMILS-LAMSPDGRYMA-SGDED----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       536 ~~~~~~~~~~h~~~I~~-l~~sp~g~~l~-sg~~d----g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs  608 (670)
                      .+. .+.+....-.|.. +.++++++.|+ ++..+    ..|+.-++..+..+..+....+.-.++.|||+|++++...
T Consensus       269 ~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  269 GGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             SSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             ccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            555 3455545556744 67888877554 45442    3566667773344455554433336899999999877544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.021  Score=61.49  Aligned_cols=217  Identities=17%  Similarity=0.148  Sum_probs=148.6

Q ss_pred             EEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          354 LNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       354 V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      -.++++++++..+. ....+..|.+.|......                           ......+.  ....++++|+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---------------------------~~~~~vG~--~P~~~~~~~~  126 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---------------------------LGSIPVGL--GPVGLAVDPD  126 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccce---------------------------eeEeeecc--CCceEEECCC
Confidence            45678888887544 444568899998553111                           11111122  5567899999


Q ss_pred             CCEEEEEeC---CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeE-E---eccc
Q 005913          433 GDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLR-I---MAGH  504 (670)
Q Consensus       433 ~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~-~---~~~~  504 (670)
                      +..+..+..   ++++.+.|..+...+.....-..+ ..+++.|+|..++++. .++.+.+.|.......+ .   ...-
T Consensus       127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~  205 (381)
T COG3391         127 GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV  205 (381)
T ss_pred             CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence            987776655   688999999988887775544455 8899999999766665 78899999977655443 0   0112


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCC
Q 005913          505 LSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDE-DGTIMMWDLASG  579 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~sg~~-dg~I~iwDl~~~  579 (670)
                      ......+.+.|+|+++.+....   +.+...|..++.....-..-.. ....+.++|+|.++.+... .+.+.+.|..+.
T Consensus       206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            2344678899999977665444   5899999998887765221112 4567899999999988854 489999999888


Q ss_pred             eeeEEeeCCC---cceEEEEEcCC
Q 005913          580 RCVTPLMGHT---SCVWTLAYSCE  600 (670)
Q Consensus       580 ~~~~~~~~h~---~~V~sl~~s~~  600 (670)
                      .....+....   ..+..+++.+.
T Consensus       286 ~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         286 RVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             ceeeeecccccccccceeccceee
Confidence            7777655433   24556666553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.024  Score=60.99  Aligned_cols=199  Identities=17%  Similarity=0.186  Sum_probs=140.4

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC---CCcEEEEECCCCcee
Q 005913          423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPL  498 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---dg~v~lwd~~~~~~~  498 (670)
                      .-.+++.++.+..+. ....+..|.+.|..+.........-. ....++++|++..+.++..   ++++.+.|..+.+..
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            345678888888544 44456889999988776665554333 4567999999987777655   688889998888877


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEE-E---EecCCCCeEEEEEcCCCCEEEEEECC---Ce
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVR-I---FIGHRSMILSLAMSPDGRYMASGDED---GT  570 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~-~---~~~h~~~I~~l~~sp~g~~l~sg~~d---g~  570 (670)
                      ........+ ..+++.|+|+.+++.. .++.|.+.|..+....+ .   ...-...-..+.++|+|.++......   +.
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            775433334 8899999999777665 78899999977665553 1   01112234678999999977665443   59


Q ss_pred             EEEEeCCCCeeeEEeeCCCc-ceEEEEEcCCCCEEEEEECC-CcEEEEeCCCCcc
Q 005913          571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSAD-CTVKLWDVTTSTK  623 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~-~V~sl~~s~~g~~l~sgs~D-g~I~iwd~~~~~~  623 (670)
                      +...|..++.....-..-.. ....+..+|+|..+.+.... +.+.+-|......
T Consensus       233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence            99999998877665221111 45678899999988888544 8888888877543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.61  E-value=0.042  Score=56.15  Aligned_cols=220  Identities=15%  Similarity=0.141  Sum_probs=127.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe
Q 005913          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (670)
Q Consensus       361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s  440 (670)
                      ..++.|+.|+.+| |.++++....                           .....  .+..+|..+...++-+.|++-+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~---------------------------~~~~i--~~~~~I~ql~vl~~~~~llvLs   54 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS---------------------------KPTRI--LKLSSITQLSVLPELNLLLVLS   54 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc---------------------------cceeE--eecceEEEEEEecccCEEEEEc
Confidence            3578999999999 8888872100                           01111  1223399999999888777665


Q ss_pred             CCCeEEEEeCCCCceeEEe--------------eCCCccEeEEE--EecCCCEEEEEECCCcEEEEECCCC-----ceeE
Q 005913          441 ADTTIRLWSTKLNANLVCY--------------KGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRI-----QPLR  499 (670)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~--------------~~h~~~V~~l~--~sp~g~~l~s~s~dg~v~lwd~~~~-----~~~~  499 (670)
                       |+.++++++.........              ......+..++  -...+...+++...++|.+|.....     +..+
T Consensus        55 -d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k  133 (275)
T PF00780_consen   55 -DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK  133 (275)
T ss_pred             -CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE
Confidence             499999998754433311              11122343333  1123444444455568998887653     3444


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC------------CCeEEEEEcCCCCEEEEEEC
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------SMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~------------~~I~~l~~sp~g~~l~sg~~  567 (670)
                      .+. -...+.+++|.  ++.++.|..+ ...+.|+.++.....+....            .++..+.. +++.+|++-  
T Consensus       134 e~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--  206 (275)
T PF00780_consen  134 EIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--  206 (275)
T ss_pred             EEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence            444 33778899998  6678887754 48889999877665542211            12333333 345555543  


Q ss_pred             CCeEEEEeCCCCeeeE--EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          568 DGTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~--~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      |..-.+.|. .|++..  .+.- ...+.++++.  ..+|+..+. +.|.||++.++..
T Consensus       207 ~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~l  259 (275)
T PF00780_consen  207 DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGEL  259 (275)
T ss_pred             cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcE
Confidence            333344443 443332  2222 2344556653  457777665 4599999999754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.59  E-value=0.05  Score=53.06  Aligned_cols=149  Identities=14%  Similarity=0.070  Sum_probs=91.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEE
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV  511 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v  511 (670)
                      -|++++.|+..|.+++.+.+++.....+.....-=......+++..+..|++|++++..|..+...+...+...+...+-
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            37889999999999999999998777666433222234566789999999999999999999988888766444444444


Q ss_pred             EEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913          512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--DGRYMASGDEDGTIMMWDLASGRCVTP  584 (670)
Q Consensus       512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp--~g~~l~sg~~dg~I~iwDl~~~~~~~~  584 (670)
                      +..|-...|.++...|.|.--...++....... ...++|.+   +|  -+..+..+.-||.+.-+| ..|+.+.+
T Consensus       142 ~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr  213 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWR  213 (354)
T ss_pred             eecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEe
Confidence            555633344444455555444444432111110 11123221   11  134455555667666666 55555543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.00025  Score=72.42  Aligned_cols=94  Identities=18%  Similarity=0.320  Sum_probs=76.8

Q ss_pred             EEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCC-CEEEE
Q 005913          529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLAS  606 (670)
Q Consensus       529 I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~-~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g-~~l~s  606 (670)
                      +++.+..+.+....+.+|...|..++|||..+ ++..++.+..|.|.|+.+...+..+..| ..+++++|..|. ++|..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            44444444444555667888899999999776 7888999999999999999999888888 789999998865 57888


Q ss_pred             EECCCcEEEEeCCCCcc
Q 005913          607 GSADCTVKLWDVTTSTK  623 (670)
Q Consensus       607 gs~Dg~I~iwd~~~~~~  623 (670)
                      |-..|.|.|||+...+.
T Consensus       254 Gl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             eccCceEEEEEccCCCc
Confidence            88999999999988654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.54  E-value=0.031  Score=60.61  Aligned_cols=170  Identities=12%  Similarity=0.031  Sum_probs=93.9

Q ss_pred             eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-------ccCCCeeEEEEcCC
Q 005913          444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-------GHLSDVDCVRWHIN  516 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-------~~~~~v~~v~~~p~  516 (670)
                      .|++|+.. |..+..+.-..+.|.++.|+.+ ..|++...||.++++|+.... ...+.       -....+.+..+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            58899877 5555544433378999999875 456677799999999986433 11111       11111222233335


Q ss_pred             CCEEEEEEcCCcEEEEECCCCc-EEEEEec--------CCC-CeEE-EEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          517 CNYIATGSSDKTVRLWDVSSGE-CVRIFIG--------HRS-MILS-LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       517 ~~~l~tgs~dg~I~iwd~~~~~-~~~~~~~--------h~~-~I~~-l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      |-.++  +.++.+.+..-.... ..+.+..        +.. .... ..++.+....+....++.+.+.+-...+.   +
T Consensus       139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence            53333  345555544322211 1111110        000 0101 23444555555555556666444332211   1


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                       ...+++..++.||+|++||.-..+|.+.|.+.+-.+
T Consensus       214 -~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  214 -DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE  249 (410)
T ss_pred             -cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence             124689999999999999999999999998765543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.52  E-value=0.072  Score=52.02  Aligned_cols=144  Identities=8%  Similarity=-0.014  Sum_probs=96.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~  512 (670)
                      ..+++.||..+.+.-.|..++.....-.- ...|.+-+.- -|.+++.|+..|.+++.+..++.....+..-..--....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            35677788888888888887766543211 1122222221 477899999999999999999988877764322222334


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      ..+++..+.+|+.|++.+..|.++..++...+-..+...+-++.|-...|+.+...|.+.--....
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence            568999999999999999999999999987665544445556666333444444555555444443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.51  E-value=0.038  Score=57.14  Aligned_cols=187  Identities=15%  Similarity=0.135  Sum_probs=116.4

Q ss_pred             EEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc---
Q 005913          428 SFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---  503 (670)
Q Consensus       428 ~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~---  503 (670)
                      .|.++...| .+--..+.|.-|+..++... .+.. ...+.++..-..+..|+++..  .+++++.+++..+..+..   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            477777744 45556788999998755432 2222 223344444444445555533  466777765555333321   


Q ss_pred             --cCCCeeEEEEcCCCCEEEEEEc-----------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C
Q 005913          504 --HLSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G  569 (670)
Q Consensus       504 --~~~~v~~v~~~p~~~~l~tgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-g  569 (670)
                        .....+.+...|+|.+.++...           -|.|+.+|. .+..++.+..+-..-..|+||||++.|+.+... +
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence              1244667888899987776444           133555554 577777776666666789999999888877654 8


Q ss_pred             eEEEEeCCC--C----ee-eEEeeCCCcceEEEEEcCCCCEEEEEECCC-cEEEEeCC
Q 005913          570 TIMMWDLAS--G----RC-VTPLMGHTSCVWTLAYSCEGSLLASGSADC-TVKLWDVT  619 (670)
Q Consensus       570 ~I~iwDl~~--~----~~-~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-~I~iwd~~  619 (670)
                      .|.-|++..  +    +. ...+....+..-.++...+|.+.+++..+| .|.+|+-.
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            888888752  2    11 122223445666788888888886665554 89999987

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.44  E-value=0.13  Score=56.14  Aligned_cols=195  Identities=17%  Similarity=0.142  Sum_probs=112.2

Q ss_pred             CEEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC-----------c
Q 005913          423 PVYSASFSPLGDFILSS-SADT----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-----------T  486 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~-s~Dg----~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-----------~  486 (670)
                      .+...++||+|+++|.+ +..|    +|+++|+.+++.+...-. ......+.|.+++..|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999988754 4444    599999999876543211 11122399999988877765433           3


Q ss_pred             EEEEECCCCcee--EEecccCCC--eeEEEEcCCCCEEEEEEcC----CcEEEEECCCC----cEEEEEecCCCCeEEEE
Q 005913          487 ARIWSMDRIQPL--RIMAGHLSD--VDCVRWHINCNYIATGSSD----KTVRLWDVSSG----ECVRIFIGHRSMILSLA  554 (670)
Q Consensus       487 v~lwd~~~~~~~--~~~~~~~~~--v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~----~~~~~~~~h~~~I~~l~  554 (670)
                      |+.|.+.+....  ..+......  ...+..++++++|+..+..    ..+++.|+..+    .....+......+....
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            788888776443  455544433  5678889999998875433    35788888875    23333333333443333


Q ss_pred             EcCCCCEEEEE---ECCCeEEEEeCCCCee---eEEeeCCCc--ceEEEEEcCCCCEEEEEECCC--cEEEEeCC
Q 005913          555 MSPDGRYMASG---DEDGTIMMWDLASGRC---VTPLMGHTS--CVWTLAYSCEGSLLASGSADC--TVKLWDVT  619 (670)
Q Consensus       555 ~sp~g~~l~sg---~~dg~I~iwDl~~~~~---~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg--~I~iwd~~  619 (670)
                      -+..+.+++..   ...+.|...++.....   ...+..|..  .+..+... .+.+++....++  .|++|++.
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECC
Confidence            33344444433   3457788888877652   224555555  34444443 233444444554  57888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.43  E-value=0.04  Score=57.81  Aligned_cols=179  Identities=16%  Similarity=0.169  Sum_probs=106.5

Q ss_pred             CCEEEEEeC----------CCeEEEEeCCCC----ceeEEe--eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913          433 GDFILSSSA----------DTTIRLWSTKLN----ANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (670)
Q Consensus       433 ~~~L~s~s~----------Dg~I~lwd~~~~----~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~  496 (670)
                      ..+|++|+.          .|.|.++++...    ..+...  ....++|.+++-- .+ +++++. ++.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence            457777753          288999999874    122221  2346788888766 34 454444 4899999998777


Q ss_pred             eeEEecccCC--CeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          497 PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       497 ~~~~~~~~~~--~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~--h~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                      .+.....+..  .+.++..  .++++++|..-+.+.++..+. +..+..+..  ....++++.|-+++..+++++.+|.+
T Consensus       119 ~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence            2322222223  4555544  467999999988888875443 332333322  23458888888777899999999999


Q ss_pred             EEEeCCC-------Ce-eeE-EeeCC-CcceEEE---EEcC--CC------CEEEEEECCCcEEEE
Q 005913          572 MMWDLAS-------GR-CVT-PLMGH-TSCVWTL---AYSC--EG------SLLASGSADCTVKLW  616 (670)
Q Consensus       572 ~iwDl~~-------~~-~~~-~~~~h-~~~V~sl---~~s~--~g------~~l~sgs~Dg~I~iw  616 (670)
                      .++....       +. .+. ...-| ...|+++   ++.|  .+      ..++.++.+|.|.+.
T Consensus       197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            9998762       22 222 22222 3457776   4444  12      248888899998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.42  E-value=0.022  Score=59.77  Aligned_cols=173  Identities=12%  Similarity=0.142  Sum_probs=108.8

Q ss_pred             CeEEEEeCCCCceeEEeeC-CCccEeEEEEec---C----CCEEEEEEC----------CCcEEEEECCCC----ceeEE
Q 005913          443 TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP---Q----GHYFASSSH----------DRTARIWSMDRI----QPLRI  500 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp---~----g~~l~s~s~----------dg~v~lwd~~~~----~~~~~  500 (670)
                      +.|++.|..+.+.+..+.- ....+.+++...   +    ..+|++|+.          .|.+.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            4688899888877655542 233445444332   2    467887752          288999999874    22222


Q ss_pred             e--cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-EEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          501 M--AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       501 ~--~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      +  ....++|.+++-- ++ +|+++ .++.|.+|++...+ ....-. .....++++...  +.+++.|+....+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            2  2346778888765 44 45554 36899999998887 443322 222355555554  669999998888888754


Q ss_pred             CC-CeeeEEee--CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          577 AS-GRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       577 ~~-~~~~~~~~--~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      .. ...+..+.  .....++++.|-++++.++.+..+|.|.++....
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            43 33233332  2345688888886667999999999999999864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.32  E-value=0.17  Score=54.24  Aligned_cols=75  Identities=20%  Similarity=0.332  Sum_probs=53.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEE----cCCC----------------C-EEE
Q 005913          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY----SCEG----------------S-LLA  605 (670)
Q Consensus       547 ~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~----s~~g----------------~-~l~  605 (670)
                      ...+.+++.+|++++.|+.+.=|+|.++|+.++..+..++|....=  +.|    ....                . +++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEE
Confidence            3457889999999999998888999999999998887777654321  111    1111                1 344


Q ss_pred             EEECCCcEEEEeCCCCcc
Q 005913          606 SGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       606 sgs~Dg~I~iwd~~~~~~  623 (670)
                      -+-.-|.|.||.+..+.+
T Consensus       385 yaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             EeccCCeEEEEecCCCCE
Confidence            455678999999888654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0011  Score=71.53  Aligned_cols=94  Identities=15%  Similarity=0.167  Sum_probs=80.8

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEe-EEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      ...|.-+.|+|.-..+|.+..+|.|.+..+. ++.+.++.-|+.+++ +++|.|||+.+|+|-.||+|++.|++++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4568889999999999999999999999998 888888887888888 99999999999999999999999999988776


Q ss_pred             Eec-ccCCCeeEEEEcC
Q 005913          500 IMA-GHLSDVDCVRWHI  515 (670)
Q Consensus       500 ~~~-~~~~~v~~v~~~p  515 (670)
                      .+. .-..+|.++-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            632 2346788888863

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0012  Score=71.28  Aligned_cols=93  Identities=18%  Similarity=0.300  Sum_probs=78.5

Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeE-EEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL-SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~-~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~  584 (670)
                      ..+.-+.|+|.-..+|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|..++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            467889999999999999999999999887 777888876777777 999999999999999999999999999987766


Q ss_pred             ee-CCCcceEEEEEcC
Q 005913          585 LM-GHTSCVWTLAYSC  599 (670)
Q Consensus       585 ~~-~h~~~V~sl~~s~  599 (670)
                      .. .-...|.++.|++
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            32 2335677777763

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.27  E-value=0.026  Score=63.80  Aligned_cols=150  Identities=15%  Similarity=0.246  Sum_probs=92.1

Q ss_pred             ccEeEEEEecCCCEEEEEE------CCCcEEEE--ECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC---------
Q 005913          464 YPVWDVQFNPQGHYFASSS------HDRTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---------  526 (670)
Q Consensus       464 ~~V~~l~~sp~g~~l~s~s------~dg~v~lw--d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---------  526 (670)
                      ..+.+.+++|+|..++...      .|..-.+|  +.. +.......+  ....+-.|+|+|..|++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4577899999999887765      24444444  542 223222333  247889999999888877533         


Q ss_pred             ---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE---EeCCCCe-ee---EEee-CCCcceEEE
Q 005913          527 ---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM---WDLASGR-CV---TPLM-GHTSCVWTL  595 (670)
Q Consensus       527 ---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i---wDl~~~~-~~---~~~~-~h~~~V~sl  595 (670)
                         +.+.+.++..+....   ...+.|..+.|||||..++... +|.|++   -....|. .+   ..+. +-...+.++
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence               233333443333222   2346799999999999888766 477777   4444453 11   1122 223346889


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          596 AYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       596 ~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .|..++.++ ++..++...+|.+.-.
T Consensus       503 ~W~~~~~L~-V~~~~~~~~v~~v~vD  527 (591)
T PRK13616        503 DWRTGDSLV-VGRSDPEHPVWYVNLD  527 (591)
T ss_pred             eEecCCEEE-EEecCCCCceEEEecC
Confidence            999998855 5565665666766543

>PHA02713 hypothetical protein; Provisional

Probab=97.24  E-value=0.03  Score=63.37  Aligned_cols=204  Identities=9%  Similarity=0.060  Sum_probs=101.8

Q ss_pred             eEEEEeCCCCceeEEeeCCCccE-eEEEEecCCCEEEEEECC------CcEEEEECCCCceeEE--ecccCCCeeEEEEc
Q 005913          444 TIRLWSTKLNANLVCYKGHNYPV-WDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLRI--MAGHLSDVDCVRWH  514 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V-~~l~~sp~g~~l~s~s~d------g~v~lwd~~~~~~~~~--~~~~~~~v~~v~~~  514 (670)
                      .+..||..+......-.-..... .+++. -++..++.||.+      ..+..||..+..-...  +.........+.  
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--
Confidence            46677877654322111111110 12222 266777777753      3467788766542211  111111122222  


Q ss_pred             CCCCEEEEEEcCC-----cEEEEECCCCcEEEE--EecCCCCeEEEEEcCCCCEEEEEECCC------------------
Q 005913          515 INCNYIATGSSDK-----TVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMASGDEDG------------------  569 (670)
Q Consensus       515 p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~sg~~dg------------------  569 (670)
                      -+++..+.|+.++     ++..||..+.+-...  +.........+  .-+|...+.||.++                  
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCccccccccccccccccccc
Confidence            3677777787654     488899887643321  11111111122  22577777777553                  


Q ss_pred             -----eEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEECCC------cEEEEeCCCCccccccccccCCccc
Q 005913          570 -----TIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADC------TVKLWDVTTSTKVLKTEEKSGTNRL  636 (670)
Q Consensus       570 -----~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg------~I~iwd~~~~~~~~~~~~~~~~~~~  636 (670)
                           .+..||..+.+  .+..+....... ++ ..-+|.+.+.||.++      .+..||..+.            ..|
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~------------~~W  493 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY------------NGW  493 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCC------------CCe
Confidence                 47778877653  233322111111 11 223577777777642      3456665541            124


Q ss_pred             ccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          637 RSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       637 ~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ..+..++........+.+  +|.+.++|+.+|
T Consensus       494 ~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        494 ELITTTESRLSALHTILH--DNTIMMLHCYES  523 (557)
T ss_pred             eEccccCcccccceeEEE--CCEEEEEeeecc
Confidence            445555554444433333  788999999887

>PRK10115 protease 2; Provisional

Probab=97.23  E-value=0.69  Score=53.76  Aligned_cols=236  Identities=11%  Similarity=0.070  Sum_probs=121.6

Q ss_pred             EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          354 LNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~d-----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      +..+.+||||++||.+...     ..|++-++.+...                           ....+.   +.-..++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~---------------------------l~~~i~---~~~~~~~  178 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW---------------------------YPELLD---NVEPSFV  178 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC---------------------------CCcccc---CcceEEE
Confidence            6778899999999976433     2366666653110                           000011   1114589


Q ss_pred             EcCCCCEEEEEeCC------CeEEEEeCCCC--ceeEEeeCCCccEeEEEE-ecCCCEEEEEEC---CCcEEEEECC--C
Q 005913          429 FSPLGDFILSSSAD------TTIRLWSTKLN--ANLVCYKGHNYPVWDVQF-NPQGHYFASSSH---DRTARIWSMD--R  494 (670)
Q Consensus       429 ~sp~~~~L~s~s~D------g~I~lwd~~~~--~~~~~~~~h~~~V~~l~~-sp~g~~l~s~s~---dg~v~lwd~~--~  494 (670)
                      |++|++.|+.+..+      ..|+.+++.++  +....+.......+-..+ +.++.+++..+.   ++.+.+|+.+  .
T Consensus       179 w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~  258 (686)
T PRK10115        179 WANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD  258 (686)
T ss_pred             EeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC
Confidence            99999877655432      36888888887  445556544444442334 438887666543   3578888853  3


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECC-CCcEEEEEecC-C-CCeEEEEEcCCCCEEEEEECC
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVS-SGECVRIFIGH-R-SMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~-~~~~~~~~~~h-~-~~I~~l~~sp~g~~l~sg~~d  568 (670)
                      +.+...+. +...+..-..+..+.+++....+   ..|...++. .++. ..+..+ . ..|..+.++ .+.++++...+
T Consensus       259 ~~~~~~~~-~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~  335 (686)
T PRK10115        259 AEPFVFLP-RRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQR  335 (686)
T ss_pred             CCceEEEE-CCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeC
Confidence            33322222 22222222223333333333222   234445554 2322 333344 3 367888887 33455566667


Q ss_pred             CeEEEEeCCC-CeeeEEee-CCCcceEEEEEc--CCC-CEEEEEEC---CCcEEEEeCCCCc
Q 005913          569 GTIMMWDLAS-GRCVTPLM-GHTSCVWTLAYS--CEG-SLLASGSA---DCTVKLWDVTTST  622 (670)
Q Consensus       569 g~I~iwDl~~-~~~~~~~~-~h~~~V~sl~~s--~~g-~~l~sgs~---Dg~I~iwd~~~~~  622 (670)
                      |.-+++-+.. +..+..+. .....+..+.++  +++ .++++.++   -+.+..+|+.++.
T Consensus       336 g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        336 GLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            7655544332 22334333 222233334444  333 34444443   3678888887653

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.22  E-value=0.025  Score=63.98  Aligned_cols=181  Identities=14%  Similarity=0.092  Sum_probs=105.4

Q ss_pred             cCEEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC---------
Q 005913          422 GPVYSASFSPLGDFILSSS------ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---------  484 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s------~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---------  484 (670)
                      ..+.+.+.+|+|+.++...      .|+  .|.+++.. +.......+.  ..+.-.|+|+|..+++.+..         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            4577889999999877654      243  45555542 2222223332  37788999998877777532         


Q ss_pred             ---CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEE---EECCCCcEEEE-----Ee-cCCCCeEE
Q 005913          485 ---RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL---WDVSSGECVRI-----FI-GHRSMILS  552 (670)
Q Consensus       485 ---g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~i---wd~~~~~~~~~-----~~-~h~~~I~~  552 (670)
                         +.+.+.+++.+....   .....|..+.|+|||..++... +|.|++   -....|. .+.     +. +-...+.+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence               223333444333222   2345799999999999998876 577777   4434443 221     22 23334688


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEeCCC-CeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcE
Q 005913          553 LAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTV  613 (670)
Q Consensus       553 l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I  613 (670)
                      +.|.+++.++ ++..++.-.+|-+.- |.....+.+  ...++.+++-+++  -++....+|.+
T Consensus       502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~  562 (591)
T PRK13616        502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL  562 (591)
T ss_pred             ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence            9999999855 555555555555432 222212222  2466777777653  45555666633

>smart00320 WD40 WD40 repeats

Probab=97.21  E-value=0.001  Score=44.03  Aligned_cols=39  Identities=49%  Similarity=0.744  Sum_probs=34.6

Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      ++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.19  E-value=0.0074  Score=69.20  Aligned_cols=134  Identities=18%  Similarity=0.181  Sum_probs=96.6

Q ss_pred             ECCCcEEEEECCCCceeEEecccCCC-eeEEEEcCC-------CCEEEEEEcCCcEEEEECCCCc--EEEEE---ecCCC
Q 005913          482 SHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHIN-------CNYIATGSSDKTVRLWDVSSGE--CVRIF---IGHRS  548 (670)
Q Consensus       482 s~dg~v~lwd~~~~~~~~~~~~~~~~-v~~v~~~p~-------~~~l~tgs~dg~I~iwd~~~~~--~~~~~---~~h~~  548 (670)
                      .....|+-.|+++|+.+..+..|... |..+  .|+       ....++|-++..+..||.|-..  ++..-   .....
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            35678999999999999999877544 4444  343       3456778889999999998532  33211   12334


Q ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      ..+|++-+.+| +||+|+.+|.||+||--..+.-..+.+-..+|.+|+.+.||++|++.+ +..+.+++..
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            67888877776 799999999999999433233334556678999999999999888766 4467777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.15  E-value=0.0014  Score=43.27  Aligned_cols=39  Identities=49%  Similarity=0.969  Sum_probs=34.7

Q ss_pred             CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       537 ~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                      +++...+..|...|.++.|++++.++++++.||.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.12  E-value=0.035  Score=62.76  Aligned_cols=186  Identities=10%  Similarity=0.012  Sum_probs=96.7

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC-----cEEEEECCCCceeE-
Q 005913          432 LGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLR-  499 (670)
Q Consensus       432 ~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-----~v~lwd~~~~~~~~-  499 (670)
                      ++...+.|+.+      ..+..||..+......-.-....-......-+|...+.||.++     ++..||..+.+-.. 
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            45666666643      3477888776543221111110001111222677888888764     47888887653222 


Q ss_pred             -EecccCCCeeEEEEcCCCCEEEEEEcCC-----------------------cEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913          500 -IMAGHLSDVDCVRWHINCNYIATGSSDK-----------------------TVRLWDVSSGECVRIFIGHRSMILSLAM  555 (670)
Q Consensus       500 -~~~~~~~~v~~v~~~p~~~~l~tgs~dg-----------------------~I~iwd~~~~~~~~~~~~h~~~I~~l~~  555 (670)
                       .+.........++  -++...+.|+.++                       .+..||..+.+-...-.-.......-+.
T Consensus       383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~  460 (557)
T PHA02713        383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV  460 (557)
T ss_pred             CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence             1111111122222  2677777777542                       4777888766443221111111111122


Q ss_pred             cCCCCEEEEEECC------CeEEEEeCCC---CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC--cEEEEeCCCC
Q 005913          556 SPDGRYMASGDED------GTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--TVKLWDVTTS  621 (670)
Q Consensus       556 sp~g~~l~sg~~d------g~I~iwDl~~---~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--~I~iwd~~~~  621 (670)
                      .-+|+..+.||.+      ..+..||..+   +..+..+...........+  +|.+.++||.||  ++..||..+.
T Consensus       461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence            3356777777654      2467899876   3444444433333333333  788999999888  6777776664

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.11  E-value=0.032  Score=63.08  Aligned_cols=217  Identities=16%  Similarity=0.191  Sum_probs=115.6

Q ss_pred             CCEEEEEeCC------CeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECC------CcEEEEECCCCceeE
Q 005913          433 GDFILSSSAD------TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR  499 (670)
Q Consensus       433 ~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d------g~v~lwd~~~~~~~~  499 (670)
                      +..++.|+.+      ..+..+|..++.......- ....-.+++.. +|..+++||.|      .++..||..+.+-..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            4455566555      3577888877644332221 11122233333 56788889888      356777777655322


Q ss_pred             E--ecccCCCeeEEEEcCCCCEEEEEEcCC-----cEEEEECCCCcEEEEEecCCCCeEEEE-EcCCCCEEEEEECCC--
Q 005913          500 I--MAGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHRSMILSLA-MSPDGRYMASGDEDG--  569 (670)
Q Consensus       500 ~--~~~~~~~v~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~~I~~l~-~sp~g~~l~sg~~dg--  569 (670)
                      .  +...........  -+|...++|+.||     +|-.||..+.+.-..-. ......+.+ ..-+|...++||.++  
T Consensus       364 ~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             cCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCc
Confidence            1  111111122222  3678888899886     47778887654322111 111122222 223577778887554  


Q ss_pred             ----eEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEECCCc-----EEEEeCCCCccccccccccCCccccc
Q 005913          570 ----TIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADCT-----VKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       570 ----~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                          ++..||..++.  .+..+..-..... ++ .-++.+.+.||.|+.     |..||..+.             .|..
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~-------------~W~~  505 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETN-------------QWTM  505 (571)
T ss_pred             cccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCC-------------ceeE
Confidence                57788877654  3333322221111 22 236788899988873     566666553             2334


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeCCCCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS  670 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs~  670 (670)
                      +.......+.+..+  .-++++.++|++||++
T Consensus       506 v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~~  535 (571)
T KOG4441|consen  506 VAPMTSPRSAVGVV--VLGGKLYAVGGFDGNN  535 (571)
T ss_pred             cccCccccccccEE--EECCEEEEEecccCcc
Confidence            43343333333322  3467888999998863

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.09  E-value=0.00066  Score=64.83  Aligned_cols=142  Identities=15%  Similarity=0.095  Sum_probs=89.1

Q ss_pred             EEEEECCCcEEEEECCCCceeE-EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEE-
Q 005913          478 FASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLA-  554 (670)
Q Consensus       478 l~s~s~dg~v~lwd~~~~~~~~-~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~-  554 (670)
                      +...+.||.|+-++++..+... .-..+......   ..-+..+++|+.+|.|++|...-. .....+..-...|.++. 
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            4445677888877776433211 11111111111   123567999999999999987621 21222222223343332 


Q ss_pred             EcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC-cceEEEEEcCCCCEEEEE--ECCCcEEEEeCCCCc
Q 005913          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASG--SADCTVKLWDVTTST  622 (670)
Q Consensus       555 ~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~-~~V~sl~~s~~g~~l~sg--s~Dg~I~iwd~~~~~  622 (670)
                      --.++.+..+++.||.|+.|++.-++.+.....|+ .++..+..+..+..++.+  |.|..++.|++....
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence            22245688899999999999999988888777777 566666666667777777  788888888876543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.07  E-value=0.31  Score=50.33  Aligned_cols=153  Identities=13%  Similarity=0.112  Sum_probs=94.9

Q ss_pred             CEEEEEeCCCeEEEEeCCC-CceeEE----eeCCCccEe-EEEEecCCCEEEEEECCCcEEEEECCCCceeE--Eecc--
Q 005913          434 DFILSSSADTTIRLWSTKL-NANLVC----YKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR--IMAG--  503 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~-~~~~~~----~~~h~~~V~-~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~--~~~~--  503 (670)
                      +.+.+-|.||++.-..+.. ++....    +.....++. .-.+...+..++-.+..|.|+--|+....+..  .+..  
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            4577778899998888873 333321    111222222 33455555556667888999998887654322  1110  


Q ss_pred             --------cCCCeeEEEEcCCCCEEEEEEc---CC-------cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEE
Q 005913          504 --------HLSDVDCVRWHINCNYIATGSS---DK-------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMAS  564 (670)
Q Consensus       504 --------~~~~v~~v~~~p~~~~l~tgs~---dg-------~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~-~l~s  564 (670)
                              -.+.-.-+++|+..+.|++.-.   +|       .|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence                    1123445788877666665321   11       588999999999998864 24688999999776 5555


Q ss_pred             E-ECCCeEEEEeCCCCeeeEEeeC
Q 005913          565 G-DEDGTIMMWDLASGRCVTPLMG  587 (670)
Q Consensus       565 g-~~dg~I~iwDl~~~~~~~~~~~  587 (670)
                      . ..++.|.+||..+|+.+.++..
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EETTTTEEEEEETTT--EEEEE--
T ss_pred             EcCCCCeEEEEeCcCCcEEeehhc
Confidence            4 4579999999999999988764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.0073  Score=69.22  Aligned_cols=102  Identities=21%  Similarity=0.271  Sum_probs=77.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (670)
Q Consensus       362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~  441 (670)
                      .+..++.|++.|.|-..|+.+.-                           .....-..-.++|++++|+.+|..++.|-.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL---------------------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~  150 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNL---------------------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLG  150 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhccc---------------------------chhhcCCccCCcceeeEecCCCceeccccC
Confidence            46789999999999888876410                           001111123589999999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEeeCCCccEeEEE---EecCCCEEEEEECCCcEEEEEC
Q 005913          442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQ---FNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~---~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      +|.|.+||+.++..++.+..|..|..++-   |..++..++++...|.  +|.+
T Consensus       151 ~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  151 DGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            99999999999999988887777766554   4446677888877776  5654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.97  E-value=0.032  Score=47.72  Aligned_cols=100  Identities=15%  Similarity=0.115  Sum_probs=65.4

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          354 LNCASISQ---DG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       354 V~~l~fs~---d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      |+++++..   || +-|++|+.|..||||+-..                               ........+.|++++-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------------------------~~~Ei~e~~~v~~L~~   50 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------------------------IVAEITETDKVTSLCS   50 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------------------------EEEEEecccceEEEEE
Confidence            56666653   32 6799999999999998442                               2222234567888887


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-C--C-CEEEEEECCCcEE
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-Q--G-HYFASSSHDRTAR  488 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~--g-~~l~s~s~dg~v~  488 (670)
                      ... ..++.+..+|+|-+|+-.  ..+...+.... +.++.+.. +  | .-|++|-.+|.|-
T Consensus        51 ~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   51 LGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            765 668889999999999753  33444444333 55555544 2  2 2478887777663

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.94  E-value=0.49  Score=49.84  Aligned_cols=238  Identities=16%  Similarity=0.148  Sum_probs=120.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      .-+.|+|.|||+++++ ...|.|++++...........                      ..............++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~----------------------~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVAD----------------------LPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-----------------------TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecc----------------------cccccccccCCcccceeccc
Confidence            3578999999988775 469999999933211000000                      00112234567889999984


Q ss_pred             ---CCEEE-EEeCC--------CeEEEEeCCCC-------ceeE-EeeC---CCccEeEEEEecCCCEEEEEECCC----
Q 005913          433 ---GDFIL-SSSAD--------TTIRLWSTKLN-------ANLV-CYKG---HNYPVWDVQFNPQGHYFASSSHDR----  485 (670)
Q Consensus       433 ---~~~L~-s~s~D--------g~I~lwd~~~~-------~~~~-~~~~---h~~~V~~l~~sp~g~~l~s~s~dg----  485 (670)
                         ..+|. +.+..        ..|.-|.....       +.+. ....   .......+.|.|+|.++++.+..+    
T Consensus        60 f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~  139 (331)
T PF07995_consen   60 FASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDN  139 (331)
T ss_dssp             CCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGG
T ss_pred             cCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCccc
Confidence               23333 32311        23444444332       1111 1122   234456799999997766665432    


Q ss_pred             ---------cEEEEECCCCc------------eeEEecccCCCeeEEEEcCC-CCEEEEE-EcCCcEEEEECCCC-----
Q 005913          486 ---------TARIWSMDRIQ------------PLRIMAGHLSDVDCVRWHIN-CNYIATG-SSDKTVRLWDVSSG-----  537 (670)
Q Consensus       486 ---------~v~lwd~~~~~------------~~~~~~~~~~~v~~v~~~p~-~~~l~tg-s~dg~I~iwd~~~~-----  537 (670)
                               .|.-.+.+..-            ....+..-......++|+|. |+++++= +.++.=.|--+..|     
T Consensus       140 ~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGW  219 (331)
T PF07995_consen  140 AQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGW  219 (331)
T ss_dssp             GCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--T
T ss_pred             ccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCC
Confidence                     23333332110            01111111123457899998 5555441 22222222222211     


Q ss_pred             ------------------------cEEEEEecCCCCeEEEEEcC-------CCCEEEEEECCCeEEEEeCCCCeeeE---
Q 005913          538 ------------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCVT---  583 (670)
Q Consensus       538 ------------------------~~~~~~~~h~~~I~~l~~sp-------~g~~l~sg~~dg~I~iwDl~~~~~~~---  583 (670)
                                              .++..+..| ..+..+.|..       .|.++++.-..+.|....+..+..+.   
T Consensus       220 P~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  298 (331)
T PF07995_consen  220 PYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE  298 (331)
T ss_dssp             TTBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred             CCCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE
Confidence                                    122333333 5566777764       45577776667788888887554332   


Q ss_pred             Ee-eCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913          584 PL-MGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (670)
Q Consensus       584 ~~-~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~  614 (670)
                      .+ ......+..+++.|||.++++...+|.|.
T Consensus       299 ~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  299 EFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             EccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            22 23445899999999999999988888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=96.89  E-value=0.0018  Score=42.86  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=28.2

Q ss_pred             ChHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005913            2 DELQVVEFVATYLKKKGFSEAENALQAEIQR   32 (670)
Q Consensus         2 ~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~   32 (670)
                      ...+++++|++||.+.||..|.+.|.+|+..
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~   32 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGL   32 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999764

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.019  Score=65.91  Aligned_cols=100  Identities=20%  Similarity=0.292  Sum_probs=76.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV  511 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v  511 (670)
                      +..++.|+..|.|-..|+...-+ ...-..-.++|++++|+.+|..++.|-.+|.|.+||+.++++++.+..|..+++.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            56788899999999888875422 12222346799999999999999999999999999999999999988777776655


Q ss_pred             EE---cCCCCEEEEEEcCCcEEEEEC
Q 005913          512 RW---HINCNYIATGSSDKTVRLWDV  534 (670)
Q Consensus       512 ~~---~p~~~~l~tgs~dg~I~iwd~  534 (670)
                      -+   ..++..++++...|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44   345556888877776  4543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.85  E-value=0.093  Score=59.38  Aligned_cols=187  Identities=19%  Similarity=0.203  Sum_probs=100.2

Q ss_pred             EEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCccEeEEEEe-cCCCEEEEEECCCc-----EEEEECC
Q 005913          426 SASFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRT-----ARIWSMD  493 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~g~~l~s~s~dg~-----v~lwd~~  493 (670)
                      +++.. ++...++|+.|      .++..||..+.+....-.-.. +-..+... -+|...++||.||.     +-.||..
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-ccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence            34444 35667788887      357778887666433211111 11111111 27888999998864     6667765


Q ss_pred             CCcee--EEecccCCCeeEEEEcCCCCEEEEEEcCC------cEEEEECCCCcEEEEE--ecCCCCeEEEEEcCCCCEEE
Q 005913          494 RIQPL--RIMAGHLSDVDCVRWHINCNYIATGSSDK------TVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       494 ~~~~~--~~~~~~~~~v~~v~~~p~~~~l~tgs~dg------~I~iwd~~~~~~~~~~--~~h~~~I~~l~~sp~g~~l~  563 (670)
                      +.+-.  ..+......+..+.  -+|...++|+.++      ++..||..++.....-  ..-.....  ...-++...+
T Consensus       405 ~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYv  480 (571)
T KOG4441|consen  405 TNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYV  480 (571)
T ss_pred             CCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEE
Confidence            54321  11111111222222  3677788887554      5778888876543321  11111111  2223577788


Q ss_pred             EEECCCe-----EEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEECCC-----cEEEEeCCC
Q 005913          564 SGDEDGT-----IMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTT  620 (670)
Q Consensus       564 sg~~dg~-----I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~  620 (670)
                      .||.||.     |..||..+.+  .+..+....+.+....+  ++...++|+.||     +|..||-.+
T Consensus       481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence            8887763     7778877654  33333333333333333  577888888886     466676554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.79  E-value=0.68  Score=46.28  Aligned_cols=182  Identities=12%  Similarity=0.050  Sum_probs=115.6

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913          422 GPVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      .-..++.|..+|.++-+++.-|  .|+.+|+.+++......-. ..---.++... +..+...=.++.+.+||.++.+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence            3456788877788888887766  7899999999876554422 22222333332 233333346789999999999888


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                      ..+.- .+.-..++  .++..|+.+.....++.+|..+.+..+.+....     ..+.-+.|- +|...|-.=....|..
T Consensus       124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~  199 (264)
T PF05096_consen  124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR  199 (264)
T ss_dssp             EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence            88763 34555565  467777777777789999999888777665332     235556665 6666666667778999


Q ss_pred             EeCCCCeeeEEeeC------------C---CcceEEEEEcCCCCEEEEEE
Q 005913          574 WDLASGRCVTPLMG------------H---TSCVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       574 wDl~~~~~~~~~~~------------h---~~~V~sl~~s~~g~~l~sgs  608 (670)
                      .|..+|+.+..+.-            +   ..-...++|.|....|...|
T Consensus       200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            99999988776521            1   24578899998766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.02  Score=61.07  Aligned_cols=139  Identities=16%  Similarity=0.197  Sum_probs=99.5

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC-------EEEEEEcCCcEEEEECCCC-c-EEEEEecCC
Q 005913          477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-------YIATGSSDKTVRLWDVSSG-E-CVRIFIGHR  547 (670)
Q Consensus       477 ~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-------~l~tgs~dg~I~iwd~~~~-~-~~~~~~~h~  547 (670)
                      .+.++.....++-.|++.|+.+....-+.. |.-+.+.|+.+       .-+.|-+|..|.-||.|-. + .+....+|.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            345556667889999999999988886654 78888887653       2355778899999999832 2 222233332


Q ss_pred             ----CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee-EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          548 ----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       548 ----~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~-~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                          ....|.+-..+| +|++|+.+|.|++||- .+..- ..+.+...+|..+..+.+|.+|+..+ +..+.+.++.
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence                345666666555 8999999999999996 44433 44667788999999999999887665 5566666653

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.74  E-value=0.81  Score=52.80  Aligned_cols=270  Identities=18%  Similarity=0.191  Sum_probs=143.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      .|.-..|--|..+|.++..||.+.-|.++.......                        ..+...-...|+.=-.|+..
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls------------------------d~Kk~~lGt~P~~Lr~f~sk  640 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS------------------------DRKKVTLGTQPISLRTFSSK  640 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEc------------------------cccccccCCCCcEEEEEeeC
Confidence            355566666789999999999998887764211110                        00111112334444455544


Q ss_pred             CC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeE-EEEec--CCCEEEEEECCCcEEEEECCCCcee--EEecccCC
Q 005913          433 GD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-VQFNP--QGHYFASSSHDRTARIWSMDRIQPL--RIMAGHLS  506 (670)
Q Consensus       433 ~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~--~~~~~~~~  506 (670)
                      ++ .++++ .|.-..+|.-+..-......-  ..+.. ..|+.  -...++++. .+.+.+..++..+.+  +++.- ..
T Consensus       641 ~~t~vfa~-sdrP~viY~~n~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl-~~  715 (1096)
T KOG1897|consen  641 SRTAVFAL-SDRPTVIYSSNGKLVYSPLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL-GE  715 (1096)
T ss_pred             CceEEEEe-CCCCEEEEecCCcEEEeccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecC-CC
Confidence            44 34443 344444554432211111110  00111 11222  123344443 456777776654433  33332 24


Q ss_pred             CeeEEEEcCCCCEEEEEEcC--------------CcEEEEECCCCcEEEEEecC-C---CCeEEEEEcCC-CCEEEEEE-
Q 005913          507 DVDCVRWHINCNYIATGSSD--------------KTVRLWDVSSGECVRIFIGH-R---SMILSLAMSPD-GRYMASGD-  566 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~d--------------g~I~iwd~~~~~~~~~~~~h-~---~~I~~l~~sp~-g~~l~sg~-  566 (670)
                      ....+++++....+++.+..              ..++++|-.+.+.+....-. .   ..|.++.|..| +.++++|+ 
T Consensus       716 ~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~  795 (1096)
T KOG1897|consen  716 SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG  795 (1096)
T ss_pred             ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence            56677777755555544321              13666666555444322111 1   13445558777 67777776 


Q ss_pred             ---------CCCeEEEEeCCCCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcc
Q 005913          567 ---------EDGTIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR  635 (670)
Q Consensus       567 ---------~dg~I~iwDl~~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  635 (670)
                               ..|.|.+|.+..++.+.....+  .+.|.++..- +|++||.-  ...|++|+......            
T Consensus       796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~e------------  860 (1096)
T KOG1897|consen  796 LVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERE------------  860 (1096)
T ss_pred             eeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEccccce------------
Confidence                     3588999988775555444333  3556665432 57666654  55899999987632            


Q ss_pred             cccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          636 LRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       636 ~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                         +..-..+..++..+...-.|..+++|...++
T Consensus       861 ---Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S  891 (1096)
T KOG1897|consen  861 ---LRIECNISNPIIALDLQVKGDEIAVGDLMRS  891 (1096)
T ss_pred             ---ehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence               2333456677888888888888888765543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.72  E-value=0.92  Score=47.85  Aligned_cols=220  Identities=16%  Similarity=0.143  Sum_probs=110.2

Q ss_pred             EEcCCCCEEEEEe-CCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          428 SFSPLGDFILSSS-ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       428 ~~sp~~~~L~s~s-~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      +|.++|+.|+-++ .||  .+.+.|+.+++..+.-.+.........++|+++.++-......|+-.|+++.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            5778897666554 344  5667788887766655543333446778898888776667789999999998776666655


Q ss_pred             CCCeeEEEEc--CCCCEEEEEEc----------------------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 005913          505 LSDVDCVRWH--INCNYIATGSS----------------------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR  560 (670)
Q Consensus       505 ~~~v~~v~~~--p~~~~l~tgs~----------------------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~  560 (670)
                      ..-+....|.  .++..++..-.                      ...|.-.|+.+|+....+. ....+..+.|||...
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence            5555555554  45665543211                      1246667888888766655 456788999999655


Q ss_pred             EEEE-EEC------CCeEEEEeCCCCeeeEEeeCCC--cceEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCccccc
Q 005913          561 YMAS-GDE------DGTIMMWDLASGRCVTPLMGHT--SCVWTLAYSCEGSLLASGS-----ADCTVKLWDVTTSTKVLK  626 (670)
Q Consensus       561 ~l~s-g~~------dg~I~iwDl~~~~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs-----~Dg~I~iwd~~~~~~~~~  626 (670)
                      .+++ |-+      |.+|.+.+.. |.....+..|.  ..+..=-|.|||..|.--+     .+..|.-+|+.++...  
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~--  277 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR--  277 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE--
T ss_pred             CEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce--
Confidence            5444 432      2234444433 33333333332  3344556899988655422     2334555666654321  


Q ss_pred             cccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          627 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                                 .+...+    +-..+.-+++|.++|.=+.
T Consensus       278 -----------~~~~~p----~~~H~~ss~Dg~L~vGDG~  302 (386)
T PF14583_consen  278 -----------RLMEMP----WCSHFMSSPDGKLFVGDGG  302 (386)
T ss_dssp             -----------EEEEE-----SEEEEEE-TTSSEEEEEE-
T ss_pred             -----------EEEeCC----ceeeeEEcCCCCEEEecCC
Confidence                       111221    2345556778887765443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.72  E-value=0.74  Score=49.00  Aligned_cols=234  Identities=11%  Similarity=0.075  Sum_probs=108.1

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCC----ceeEEeeC---CC----ccEeEEEEecCCCEEEEEE------CCCcEEEEECC
Q 005913          432 LGDFILSSS-ADTTIRLWSTKLN----ANLVCYKG---HN----YPVWDVQFNPQGHYFASSS------HDRTARIWSMD  493 (670)
Q Consensus       432 ~~~~L~s~s-~Dg~I~lwd~~~~----~~~~~~~~---h~----~~V~~l~~sp~g~~l~s~s------~dg~v~lwd~~  493 (670)
                      +.++|+..+ ..+.|+|.|+.+.    +..+++..   +.    ..-..+..-|+|..++++-      .-|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345777666 6788999998843    22333332   10    1122344557888888863      23568888888


Q ss_pred             CCceeEEecccC---CCeeEEEEcCCCCEEEEEEc--------------------CCcEEEEECCCCcEEEEEecCC--C
Q 005913          494 RIQPLRIMAGHL---SDVDCVRWHINCNYIATGSS--------------------DKTVRLWDVSSGECVRIFIGHR--S  548 (670)
Q Consensus       494 ~~~~~~~~~~~~---~~v~~v~~~p~~~~l~tgs~--------------------dg~I~iwd~~~~~~~~~~~~h~--~  548 (670)
                      +...........   .--..+-|+|..+.+++...                    ..++.+||+.+.+.++++.-..  .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            777666555322   22456778899999988652                    3579999999999998886432  2


Q ss_pred             CeEEEEEcCC--CCE-EEEEECCCeEEEEeC-CCCe----eeEEeeC-----C------------CcceEEEEEcCCCCE
Q 005913          549 MILSLAMSPD--GRY-MASGDEDGTIMMWDL-ASGR----CVTPLMG-----H------------TSCVWTLAYSCEGSL  603 (670)
Q Consensus       549 ~I~~l~~sp~--g~~-l~sg~~dg~I~iwDl-~~~~----~~~~~~~-----h------------~~~V~sl~~s~~g~~  603 (670)
                      ....+.|..+  ..+ ++.+.-.++|..|-- ..+.    .+..+..     -            ..-|+.+..|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            3456677554  333 333444555555543 3332    1222211     0            245789999999998


Q ss_pred             EEEEE-CCCcEEEEeCCCCccccccccc--cCCcccccccccC--CCCCCeEEEEEecCCcEEEEee
Q 005913          604 LASGS-ADCTVKLWDVTTSTKVLKTEEK--SGTNRLRSLKTLP--TKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       604 l~sgs-~Dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      |..+. .+|.|+.||+............  .+...........  .-.+...-+..|.||+.|...+
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            87776 6899999999886554332211  1100000000111  1123457788999998776543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.71  E-value=0.92  Score=46.76  Aligned_cols=273  Identities=15%  Similarity=0.121  Sum_probs=125.5

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      .+....+..+.|..+..-.|+| ..|.|  +.....+..-...                      .......-.-..+++
T Consensus        13 l~t~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~----------------------~~~~~~~~~~~l~~I   67 (302)
T PF14870_consen   13 LPTDKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPV----------------------SLDLDNPFDYHLNSI   67 (302)
T ss_dssp             -S-SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE---------------------------S-----EEEEE
T ss_pred             cCCCCceEEEEEecCCEEEEEe-cCCEE--EEECCCCcccccc----------------------ccCCCccceeeEEEE
Confidence            3456689999999767777777 44543  4333211100000                      000000001235677


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEecc
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMAG  503 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~-~~~~~~  503 (670)
                      .|.. ...+++ +..+ +.+...+.+..-..+.   .-......+....++...+ ++..|.|+ ...+.++. ......
T Consensus        68 ~f~~-~~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy-~T~DgG~tW~~~~~~  142 (302)
T PF14870_consen   68 SFDG-NEGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIY-RTTDGGKTWQAVVSE  142 (302)
T ss_dssp             EEET-TEEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EE-EESSTTSSEEEEE-S
T ss_pred             EecC-CceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEE-EeCCCCCCeeEcccC
Confidence            7764 334444 4455 4444444444333322   1122233444444443333 34444432 22333332 223344


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CCCeee
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-ASGRCV  582 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl-~~~~~~  582 (670)
                      ..+.+..+..+++|.++++++......-||--...-...-+.....|.+|.|+|++...+++ ..|.|++=+. ......
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence            55778888889999999998766666788864332333333456789999999998776654 7888888872 222211


Q ss_pred             EE----eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          583 TP----LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       583 ~~----~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      ..    +....-.+..++|.+++...++|+ .|++ +...+.++            .+........-.+.++.+.|.+..
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk------------tW~~~~~~~~~~~n~~~i~f~~~~  287 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK------------TWQKDRVGENVPSNLYRIVFVNPD  287 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS------------S-EE-GGGTTSSS---EEEEEETT
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc------------cceECccccCCCCceEEEEEcCCC
Confidence            11    111223478999998877777655 5544 33333332            122222333345579999998888


Q ss_pred             cEEEEee
Q 005913          659 LLFAAGA  665 (670)
Q Consensus       659 ~~La~gs  665 (670)
                      +-+|.|.
T Consensus       288 ~gf~lG~  294 (302)
T PF14870_consen  288 KGFVLGQ  294 (302)
T ss_dssp             EEEEE-S
T ss_pred             ceEEECC
Confidence            8777764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.71  E-value=0.16  Score=43.43  Aligned_cols=101  Identities=20%  Similarity=0.229  Sum_probs=67.9

Q ss_pred             eeEEEEcC---C-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          508 VDCVRWHI---N-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       508 v~~v~~~p---~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      |+++++..   + .+.|++|+.|..||+|+  ....+..+.. ...|++++-... ..++.+..+|+|-+|+-.  ..+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            45555543   2 36899999999999997  4466666654 466888887766 568888999999999853  3333


Q ss_pred             EeeCCCcceEEEEEcC-CC---CEEEEEECCCcEEE
Q 005913          584 PLMGHTSCVWTLAYSC-EG---SLLASGSADCTVKL  615 (670)
Q Consensus       584 ~~~~h~~~V~sl~~s~-~g---~~l~sgs~Dg~I~i  615 (670)
                      +.+.- ..+.++.+.. ++   .-|++|-.+|.|-+
T Consensus        76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            33322 2355655433 32   36888888888743

>PHA03098 kelch-like protein; Provisional

Probab=96.70  E-value=0.07  Score=60.29  Aligned_cols=185  Identities=11%  Similarity=0.054  Sum_probs=88.7

Q ss_pred             CCCEEEEEeCCC------eEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCCcee
Q 005913          432 LGDFILSSSADT------TIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPL  498 (670)
Q Consensus       432 ~~~~L~s~s~Dg------~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~~~  498 (670)
                      ++..++.|+.++      .+..||..+.+....-..  .......+  .-++..++.||.+     ..+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            355556665432      467788776554321111  11111112  2267777888765     35677887665422


Q ss_pred             EEecccCCC-eeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---
Q 005913          499 RIMAGHLSD-VDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---  568 (670)
Q Consensus       499 ~~~~~~~~~-v~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---  568 (670)
                      ..-...... -.+++ .-+++..+.|+.+      ..+..||..+++-...-..........+...++..++.||.+   
T Consensus       372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  450 (534)
T PHA03098        372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID  450 (534)
T ss_pred             eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence            211101011 11122 2356666667632      458889987764432111010100111222356666666643   


Q ss_pred             -----CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913          569 -----GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS  621 (670)
Q Consensus       569 -----g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~  621 (670)
                           ..+.+||..+++-  +..+.........+.+  ++.+++.||.+     +.|.+||..+.
T Consensus       451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        451 NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                 2388899876542  2222211111122222  67777777754     46777876653

>PRK10115 protease 2; Provisional

Probab=96.70  E-value=1.2  Score=51.91  Aligned_cols=194  Identities=8%  Similarity=0.004  Sum_probs=106.7

Q ss_pred             cCEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC------CcEEEE
Q 005913          422 GPVYSASFSPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------RTARIW  490 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d------g~v~lw  490 (670)
                      -.+..+.|+|++++|+.+..     ..+|++.|+.++..+...-....  ..++|+++++.|+.+..+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            45667899999998875532     23588999987764322111111  459999999877666542      367778


Q ss_pred             ECCCC--ceeEEecccCCCee-EEEEcCCCCEEEEEEc---CCcEEEEECC--CCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913          491 SMDRI--QPLRIMAGHLSDVD-CVRWHINCNYIATGSS---DKTVRLWDVS--SGECVRIFIGHRSMILSLAMSPDGRYM  562 (670)
Q Consensus       491 d~~~~--~~~~~~~~~~~~v~-~v~~~p~~~~l~tgs~---dg~I~iwd~~--~~~~~~~~~~h~~~I~~l~~sp~g~~l  562 (670)
                      ++.++  +....+........ .+..+.++++++..+.   ++.+.+|+..  ++.....+....+....+. +..+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence            88777  33445543333333 2233448887766543   3578888853  3443222222222223322 3233333


Q ss_pred             EEEE---CCCeEEEEeCCCCeeeEEeeCC-C-cceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          563 ASGD---EDGTIMMWDLASGRCVTPLMGH-T-SCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       563 ~sg~---~dg~I~iwDl~~~~~~~~~~~h-~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      +...   ....|...++........+..+ . ..|..+.++ .+.++++...+|.-+++-+.
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            3222   2234555555521222334444 3 367888887 44566777777776666554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.65  E-value=0.39  Score=48.16  Aligned_cols=162  Identities=15%  Similarity=0.193  Sum_probs=113.0

Q ss_pred             eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc
Q 005913          460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE  538 (670)
Q Consensus       460 ~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~  538 (670)
                      .+-...+.++.|+|+.+.+++........+|=...|+.++.+. ....+...+.+..++++.++--.++.+.++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            3445569999999999999988888888888888888888876 234567788888888888888888999888776553


Q ss_pred             EEEEEe---------cC-CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-e--eEEeeCCC-------cceEEEEEc
Q 005913          539 CVRIFI---------GH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-C--VTPLMGHT-------SCVWTLAYS  598 (670)
Q Consensus       539 ~~~~~~---------~h-~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-~--~~~~~~h~-------~~V~sl~~s  598 (670)
                      .+....         .+ +...-.++|.|....|+.+-+..=+.||....+. .  +.....+.       ..|.++.|+
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            222111         12 4457789999999999888887777777665322 1  11111111       346778888


Q ss_pred             C-CCCEEEEEECCCcEEEEeCCCC
Q 005913          599 C-EGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       599 ~-~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      + .+.+|+-+..++.+.-.|....
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCCC
Confidence            6 4556666667777766666543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.63  E-value=1.2  Score=47.57  Aligned_cols=182  Identities=16%  Similarity=0.192  Sum_probs=90.3

Q ss_pred             EEEcCCCCEEEEEeC------CCeEEEEeCCCCceeEEeeCC---CccEeEEEEecCCCEEEEEEC--------------
Q 005913          427 ASFSPLGDFILSSSA------DTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSH--------------  483 (670)
Q Consensus       427 l~~sp~~~~L~s~s~------Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~sp~g~~l~s~s~--------------  483 (670)
                      +-.-|+|+.++|+-.      -|-+.+.|-++..........   ..--.++-|.|..+.++|...              
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d  214 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED  214 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence            344568888776532      256888888877777666542   233467788888888888642              


Q ss_pred             ------CCcEEEEECCCCceeEEecccCC--CeeEEEEc--CCCCEEEEEE-cCCcEEEEEC-CCCcE----EEEEec--
Q 005913          484 ------DRTARIWSMDRIQPLRIMAGHLS--DVDCVRWH--INCNYIATGS-SDKTVRLWDV-SSGEC----VRIFIG--  545 (670)
Q Consensus       484 ------dg~v~lwd~~~~~~~~~~~~~~~--~v~~v~~~--p~~~~l~tgs-~dg~I~iwd~-~~~~~----~~~~~~--  545 (670)
                            ..++.+||+.+.+.++.+.-...  -+..+.|.  |+..+=++|+ -.++|..|-- ..++-    +..+..  
T Consensus       215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~  294 (461)
T PF05694_consen  215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK  294 (461)
T ss_dssp             HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred             hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence                  46899999999999988874322  34566665  5555555444 3444554433 33321    111111  


Q ss_pred             ---------------CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCC---eeeEEee-C---------------CCc
Q 005913          546 ---------------HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG---RCVTPLM-G---------------HTS  590 (670)
Q Consensus       546 ---------------h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~---~~~~~~~-~---------------h~~  590 (670)
                                     -..-|+.|.+|.|.++|+.++ .+|.|+.||+..-   +.+.++. +               -.+
T Consensus       295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G  374 (461)
T PF05694_consen  295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG  374 (461)
T ss_dssp             --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred             cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence                           024479999999999998765 6899999999753   2332221 1               112


Q ss_pred             ceEEEEEcCCCCEEEEEE
Q 005913          591 CVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       591 ~V~sl~~s~~g~~l~sgs  608 (670)
                      ...-+..|.||+.|...+
T Consensus       375 gPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  375 GPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTSSEEEEE-
T ss_pred             CCCeEEEccCCeEEEEEe
Confidence            345678888998777654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.61  E-value=0.17  Score=50.99  Aligned_cols=153  Identities=17%  Similarity=0.131  Sum_probs=95.4

Q ss_pred             CeeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe-CCCCeee
Q 005913          507 DVDCVRWHINCNYIATGS---SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD-LASGRCV  582 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD-l~~~~~~  582 (670)
                      .+...+++++++.++...   ....++++..  +....... ....++...|+++|...+....+...+++- ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999887765   3344555543  33333322 223688889999988777777666667663 3333222


Q ss_pred             -EEeeCC--CcceEEEEEcCCCCEEEEEE---CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          583 -TPLMGH--TSCVWTLAYSCEGSLLASGS---ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       583 -~~~~~h--~~~V~sl~~s~~g~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                       ......  .+.|.++.+||||..++...   .++.|.|--+........      ......+.........+..++|.+
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~------~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP------RRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc------ceeccceEecccccCcceeeeecC
Confidence             112211  22899999999999877766   357787776654332100      000111222334456899999999


Q ss_pred             CCcEEEEeeCCC
Q 005913          657 RNLLFAAGALSK  668 (670)
Q Consensus       657 ~~~~La~gs~dg  668 (670)
                      ++.+++.+...+
T Consensus       176 ~~~L~V~~~~~~  187 (253)
T PF10647_consen  176 DSTLVVLGRSAG  187 (253)
T ss_pred             CCEEEEEeCCCC
Confidence            999888876654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.59  E-value=1.1  Score=50.42  Aligned_cols=141  Identities=15%  Similarity=0.161  Sum_probs=87.1

Q ss_pred             cEEEEECCCCceeEEecccCCCee---------EEEEcCCCC---EEEEEEcCCcEEEEECCCCcEEEE--------Ee-
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVD---------CVRWHINCN---YIATGSSDKTVRLWDVSSGECVRI--------FI-  544 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~---------~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~~~~--------~~-  544 (670)
                      .|.-.|+++++....++....++.         -+....+|+   .++.++.+|.+++.|..+|+.+..        +. 
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            677778889988877764322221         222334665   778899999999999999988621        10 


Q ss_pred             --c-CC-CCe----------------------------EEEEEcCCCCEEEEEECC------------------------
Q 005913          545 --G-HR-SMI----------------------------LSLAMSPDGRYMASGDED------------------------  568 (670)
Q Consensus       545 --~-h~-~~I----------------------------~~l~~sp~g~~l~sg~~d------------------------  568 (670)
                        . .. .++                            ..++++|+..+++....+                        
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence              0 00 000                            125566665555443322                        


Q ss_pred             ---------CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          569 ---------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       569 ---------g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                               |.|.-+|+.+|+.+-+.........+. ..-.+.+++.++.||.++++|..+++.+.+.
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence                     467888888887776554222111121 1124567888888999999999999876544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.42  Score=47.90  Aligned_cols=166  Identities=11%  Similarity=0.173  Sum_probs=113.4

Q ss_pred             cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      |-...|.++.|+|+.+.|++......-.+|=...|..+.++.-. -...-.|.|..+|.+.++--.++.+.++.++....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            44556999999999999988887777777766668777765431 22344688888888888888889999888765432


Q ss_pred             eEEec---------cc-CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-E--EEEEecCC-------CCeEEEEEcC
Q 005913          498 LRIMA---------GH-LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-C--VRIFIGHR-------SMILSLAMSP  557 (670)
Q Consensus       498 ~~~~~---------~~-~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-~--~~~~~~h~-------~~I~~l~~sp  557 (670)
                      +..+.         .+ ......++|.|....|+.+-...-+.||.+..+. .  +.....+.       ..|.++.|++
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            21111         12 4567889999999999998888878887765332 1  11111111       2467788887


Q ss_pred             -CCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          558 -DGRYMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       558 -~g~~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                       .+..|+.+.+++.+.-.|.. |..+..+
T Consensus       243 ~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             CCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence             56677778888888888854 4444444

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.55  E-value=0.087  Score=57.26  Aligned_cols=148  Identities=15%  Similarity=0.224  Sum_probs=91.7

Q ss_pred             cCEEEEEEcCCCCEEE-EEe--CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC----CCEEEEEECCCcEEEEECC-
Q 005913          422 GPVYSASFSPLGDFIL-SSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHYFASSSHDRTARIWSMD-  493 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~-s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~----g~~l~s~s~dg~v~lwd~~-  493 (670)
                      .+|.+++|. ||+.++ +.-  .+|.+++=|   ...+    |.-..|..+.|.|-    ...+++.-+...|.+|.+- 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            588999998 565444 332  234333322   1122    23345889999994    3356667788999999874 


Q ss_pred             ----CCceeEEecccCC-----CeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEE
Q 005913          494 ----RIQPLRIMAGHLS-----DVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       494 ----~~~~~~~~~~~~~-----~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~  563 (670)
                          +.+.+..-..+..     --..+.|||....|++-+....-.+++++.. ..+..-....+-|.|.+|.+||+.|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                2333222221111     1246789999998888776665566777643 33333335568899999999999877


Q ss_pred             EEE-CCCeEEEEeCC
Q 005913          564 SGD-EDGTIMMWDLA  577 (670)
Q Consensus       564 sg~-~dg~I~iwDl~  577 (670)
                      .+- ..=.-++||-.
T Consensus       172 VAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEeCCeEEEEEecCc
Confidence            653 34456788853

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.48  E-value=0.82  Score=44.28  Aligned_cols=135  Identities=13%  Similarity=0.229  Sum_probs=86.6

Q ss_pred             CccEeEEEEecCCCEEEEEECC---------CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE-EEcCCcEEEE
Q 005913          463 NYPVWDVQFNPQGHYFASSSHD---------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLW  532 (670)
Q Consensus       463 ~~~V~~l~~sp~g~~l~s~s~d---------g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t-gs~dg~I~iw  532 (670)
                      .....+-..+|+|+|++-.-.|         |.++.|-...  .+..+.....--+.++|+.+.+.+.. -+.+-+|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            3445667789999985433222         4444444322  22223333334467889877766554 4556678777


Q ss_pred             E--CCCCcE-----EEEEec---CC-CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913          533 D--VSSGEC-----VRIFIG---HR-SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (670)
Q Consensus       533 d--~~~~~~-----~~~~~~---h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~  599 (670)
                      |  ..+|..     +..++.   .. -....+++.-+|.+.+++-..|+|...|..+|+.+.++.-.+..|+|++|--
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            7  555542     222221   01 1123455566888888888999999999999999999998899999999954

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.47  E-value=1.1  Score=48.01  Aligned_cols=146  Identities=10%  Similarity=0.098  Sum_probs=80.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeC-----------CC-cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          352 NGLNCASISQDGSLVAGGFS-----------DS-SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~-----------dg-~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      .....++|.++|+++++-..           .+ .|.+++-...                        ++.......+..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg------------------------dG~~d~~~vfa~   69 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADG------------------------DGKYDKSNVFAE   69 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC------------------------CCCcceeEEeec
Confidence            34678899999998776531           22 5555543210                        011112233333


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ceeEE---eeC----CCccEeEEEEecCCCEEEEEECC---
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-----ANLVC---YKG----HNYPVWDVQFNPQGHYFASSSHD---  484 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~-----~~~~~---~~~----h~~~V~~l~~sp~g~~l~s~s~d---  484 (670)
                      .-....++++.+++  |++++.....++.+....     +....   +..    +......+.|.|+|.+.++.+..   
T Consensus        70 ~l~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~  147 (367)
T TIGR02604        70 ELSMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS  147 (367)
T ss_pred             CCCCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence            33456789999888  444444443334454321     11112   211    13347789999999876655421   


Q ss_pred             ----------------CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE
Q 005913          485 ----------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS  524 (670)
Q Consensus       485 ----------------g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs  524 (670)
                                      |.+.-++.++++. ..+.........++|+|+|+.+++-.
T Consensus       148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       148 KVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             eeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence                            3455555555443 33333335567899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.41  E-value=0.9  Score=53.02  Aligned_cols=195  Identities=11%  Similarity=0.087  Sum_probs=119.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc--------EeEEEEec----------------CCCEEEEEECCCcEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP--------VWDVQFNP----------------QGHYFASSSHDRTAR  488 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--------V~~l~~sp----------------~g~~l~s~s~dg~v~  488 (670)
                      +..|..|+.++.|.-.|..+++.+-.+......        ...+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556677777788888888888777665532110        12222221                344788899999999


Q ss_pred             EEECCCCceeEEecccCCCee-------------EEEEcC--CCCEEEEEEc----------CCcEEEEECCCCcEEEEE
Q 005913          489 IWSMDRIQPLRIMAGHLSDVD-------------CVRWHI--NCNYIATGSS----------DKTVRLWDVSSGECVRIF  543 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~-------------~v~~~p--~~~~l~tgs~----------dg~I~iwd~~~~~~~~~~  543 (670)
                      -.|.++++.+..+.. .+.|.             .+.-.|  .+..+++|+.          +|.|+-+|+++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876642 11111             011112  2345666643          688999999999998776


Q ss_pred             ecC---------CC--------Ce-EEEEEcCCCCEEEEEE------------------CCCeEEEEeCCCCeeeEEeeC
Q 005913          544 IGH---------RS--------MI-LSLAMSPDGRYMASGD------------------EDGTIMMWDLASGRCVTPLMG  587 (670)
Q Consensus       544 ~~h---------~~--------~I-~~l~~sp~g~~l~sg~------------------~dg~I~iwDl~~~~~~~~~~~  587 (670)
                      ..-         .+        .+ ..+++.|....++.+.                  ..+.|.-.|..+|+..-.++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            521         00        01 2344555444444322                  235677788889988766654


Q ss_pred             CCcceEE---------EEEcC-CCC---EEEEEECCCcEEEEeCCCCccccccc
Q 005913          588 HTSCVWT---------LAYSC-EGS---LLASGSADCTVKLWDVTTSTKVLKTE  628 (670)
Q Consensus       588 h~~~V~s---------l~~s~-~g~---~l~sgs~Dg~I~iwd~~~~~~~~~~~  628 (670)
                      ....++.         +.+.. +|+   .++.++.+|.+.+.|-.+++.+...+
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            2111121         22322 553   79999999999999999988776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.32  E-value=1  Score=45.04  Aligned_cols=195  Identities=13%  Similarity=0.073  Sum_probs=114.4

Q ss_pred             cEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeEEecccC-CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE
Q 005913          465 PVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR  541 (670)
Q Consensus       465 ~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~~~~~~~-~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~  541 (670)
                      -...+.|..+|..+-+.+.-|  .|+.+|+.+++......-.. ---..++.. ++......-.++...+||..+.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence            345678878888888888666  79999999998776544221 122334443 33444455578999999999999988


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC--C---cceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913          542 IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--T---SCVWTLAYSCEGSLLASGSADCTVKLW  616 (670)
Q Consensus       542 ~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h--~---~~V~sl~~s~~g~~l~sgs~Dg~I~iw  616 (670)
                      .+.- .+.=..++  .+|..|+.......|+++|..+.+....+...  .   ..+.-+.|- +|.+.|-.=....|...
T Consensus       125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            8853 34556666  56778888877889999999887766655422  2   234445554 56666666566677777


Q ss_pred             eCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC-cEEEEe
Q 005913          617 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAG  664 (670)
Q Consensus       617 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~g  664 (670)
                      |..++..........-......-........-.+.++|.|.+ .++++|
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            777776543332110000000000011124568899998764 566666

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.26  E-value=0.015  Score=55.75  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=71.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE-EEEEEcCCCCEEEEEeC
Q 005913          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV-YSASFSPLGDFILSSSA  441 (670)
Q Consensus       363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~L~s~s~  441 (670)
                      +.-+++|+.+|.|.+|++...+..                           ......-...| ..+.--.++.+..+++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~---------------------------~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~  122 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAH---------------------------SDRVCSGEESIDLGIPNGRDSSLGCVGAQ  122 (238)
T ss_pred             CceEEeecccceEEEecCCccchH---------------------------HHhhhcccccceeccccccccceeEEecc
Confidence            456889999999999998732110                           00011111222 22233334567889999


Q ss_pred             CCeEEEEeCCCCceeEEeeCCC-ccEeEEEEecCCCEEEEE--ECCCcEEEEECCC
Q 005913          442 DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASS--SHDRTARIWSMDR  494 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~--s~dg~v~lwd~~~  494 (670)
                      ||.|+.|++.-++.+.....|+ .++.....+..+..++++  |.|..++.|++..
T Consensus       123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            9999999999888887777787 666666666667777777  7778888887754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.23  E-value=0.8  Score=46.63  Aligned_cols=145  Identities=13%  Similarity=0.163  Sum_probs=91.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe----------
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM----------  501 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~----------  501 (670)
                      .++.|+.|+.+| +.++++.......... +..+|..+...|+-+.+++-+ |+.++++++.........          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            578899999998 9999983332222222 233499999999777766664 499999998765443311          


Q ss_pred             ----cccCCCeeEEE--EcCCCCEEEEEEcCCcEEEEECCCC-----cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913          502 ----AGHLSDVDCVR--WHINCNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       502 ----~~~~~~v~~v~--~~p~~~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                          ......+...+  -.+.+...++....+.|.+|.....     +..+.+. -...+.+++|.  ++.++.|..++ 
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-  158 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-  158 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence                11222333333  1134444444555668888877643     3445554 34778899998  56777777554 


Q ss_pred             EEEEeCCCCeeeE
Q 005913          571 IMMWDLASGRCVT  583 (670)
Q Consensus       571 I~iwDl~~~~~~~  583 (670)
                      ..+.|+.++....
T Consensus       159 f~~idl~~~~~~~  171 (275)
T PF00780_consen  159 FYLIDLNTGSPSE  171 (275)
T ss_pred             eEEEecCCCCceE
Confidence            8889998775543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.20  E-value=1.6  Score=43.94  Aligned_cols=145  Identities=19%  Similarity=0.167  Sum_probs=91.5

Q ss_pred             cEeEEEEecCCCEEEEEE---CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEE-CCCCcEE
Q 005913          465 PVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD-VSSGECV  540 (670)
Q Consensus       465 ~V~~l~~sp~g~~l~s~s---~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd-~~~~~~~  540 (670)
                      .+.+.++++++..++...   ....++++...  ....... ....+..-.|++++...++...+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688899999999877766   33355555443  3333322 223788889999988777777677777773 3333322


Q ss_pred             E--EEecCC-CCeEEEEEcCCCCEEEEEE---CCCeEEEEeCC---CC------eeeEEeeCCCcceEEEEEcCCCCEEE
Q 005913          541 R--IFIGHR-SMILSLAMSPDGRYMASGD---EDGTIMMWDLA---SG------RCVTPLMGHTSCVWTLAYSCEGSLLA  605 (670)
Q Consensus       541 ~--~~~~h~-~~I~~l~~sp~g~~l~sg~---~dg~I~iwDl~---~~------~~~~~~~~h~~~V~sl~~s~~g~~l~  605 (670)
                      .  .-.... +.|+.+.+||||..++...   .++.|.+=-+.   .+      ..+.........+.+++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            2  111111 2899999999999887655   45777776543   22      11111223346789999999998877


Q ss_pred             EEECCCc
Q 005913          606 SGSADCT  612 (670)
Q Consensus       606 sgs~Dg~  612 (670)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            7765543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.077  Score=56.75  Aligned_cols=134  Identities=16%  Similarity=0.247  Sum_probs=92.9

Q ss_pred             CCCEEE-EEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE-------EEEEECCCeEEEEeCCCC-e-eeEEe
Q 005913          516 NCNYIA-TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-------MASGDEDGTIMMWDLASG-R-CVTPL  585 (670)
Q Consensus       516 ~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~-------l~sg~~dg~I~iwDl~~~-~-~~~~~  585 (670)
                      +.+.|+ .+.....++-.|+..|+.+..+.-+.. |+-+.+.|+.+.       =+.|-.|..|.-||.+-. . .+...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            444444 455567799999999999999987766 777788886542       234667888999999732 2 23333


Q ss_pred             eCCC----cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913          586 MGHT----SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  661 (670)
Q Consensus       586 ~~h~----~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L  661 (670)
                      ++|.    ..-.|.+-. ...++++||.+|.||+||--. .              ..-..+|+...+|..|..+.+|.++
T Consensus       423 q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~-~--------------~AKTAlPgLG~~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIG-R--------------RAKTALPGLGDAIKHVDVTADGKWI  486 (644)
T ss_pred             eccccccccccceeeec-CCceEEEeecCCcEEeehhhh-h--------------hhhhcccccCCceeeEEeeccCcEE
Confidence            3343    122333333 445899999999999999622 1              1234678889999999999999988


Q ss_pred             EEeeC
Q 005913          662 AAGAL  666 (670)
Q Consensus       662 a~gs~  666 (670)
                      .+.+.
T Consensus       487 l~Tc~  491 (644)
T KOG2395|consen  487 LATCK  491 (644)
T ss_pred             EEecc
Confidence            76553

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.14  E-value=2.3  Score=45.53  Aligned_cols=142  Identities=8%  Similarity=0.076  Sum_probs=80.1

Q ss_pred             cCEEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCCC--c--eeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913          422 GPVYSASFSPLGDFILSSS-----------ADT-TIRLWSTKLN--A--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s-----------~Dg-~I~lwd~~~~--~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                      .....|+|.++|+++++..           ..+ .|.+++-..+  .  ....+-..-.....+++.++| .+ +++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCe
Confidence            4456789999999777653           223 6777764322  2  223343333446789999888 44 444443


Q ss_pred             cEEEEECCCC-----ceeEE---ecc----cCCCeeEEEEcCCCCEEEEEEcC-------------------CcEEEEEC
Q 005913          486 TARIWSMDRI-----QPLRI---MAG----HLSDVDCVRWHINCNYIATGSSD-------------------KTVRLWDV  534 (670)
Q Consensus       486 ~v~lwd~~~~-----~~~~~---~~~----~~~~v~~v~~~p~~~~l~tgs~d-------------------g~I~iwd~  534 (670)
                      ..++.|.+..     +....   +..    +......++|.|+|.+.++-+..                   |.|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334454321     22222   221    12347789999999876654421                   44556666


Q ss_pred             CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       535 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      .+++....-.++ .....++|+|+|.++++-.
T Consensus       172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            554433222233 3356899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.12  E-value=1.8  Score=43.80  Aligned_cols=201  Identities=16%  Similarity=0.226  Sum_probs=116.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCC------CC-ceeEEeeC-----CCccEeEEEEecCC------------CEE
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTK------LN-ANLVCYKG-----HNYPVWDVQFNPQG------------HYF  478 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~------~~-~~~~~~~~-----h~~~V~~l~~sp~g------------~~l  478 (670)
                      .-+.|+++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+...            ..|
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            34789999999888888888999999986      12 22333332     12346677776432            236


Q ss_pred             EEEECCCcEEEEECCCCc-----eeEEec-ccCCC-eeEEEEcC--CCCEEEEE-EcCCcEEEEECCCCcEE--EEEecC
Q 005913          479 ASSSHDRTARIWSMDRIQ-----PLRIMA-GHLSD-VDCVRWHI--NCNYIATG-SSDKTVRLWDVSSGECV--RIFIGH  546 (670)
Q Consensus       479 ~s~s~dg~v~lwd~~~~~-----~~~~~~-~~~~~-v~~v~~~p--~~~~l~tg-s~dg~I~iwd~~~~~~~--~~~~~h  546 (670)
                      +.++.||+|.-|...-..     ....+. ..... -..+++..  .+++|..+ -..++|.++|-.=.+..  ..|...
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            788899999999843211     112222 11122 33455543  35555544 35788999985422111  011110


Q ss_pred             C-----C-----------CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee--CCCcceEEEEEcC------CCC
Q 005913          547 R-----S-----------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSC------EGS  602 (670)
Q Consensus       547 ~-----~-----------~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~--~h~~~V~sl~~s~------~g~  602 (670)
                      .     .           .|+-..-.++++.=+.|..-|.|-+||+ .|+.++++.  +.-...|.|+..|      .|.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence            0     0           0111111222222223334578999996 577777763  2335667888765      567


Q ss_pred             EEEEEECCCcEEEEeCCCCccc
Q 005913          603 LLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       603 ~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      +|+---.||+|..||..++.-.
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             eEEeecCCceeEEecCCCCcee
Confidence            8888788999999999877643

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.08  E-value=3.4  Score=47.95  Aligned_cols=174  Identities=13%  Similarity=0.184  Sum_probs=115.4

Q ss_pred             eEEEEeCCCCceeEEeeCC----CccEeEEEEecC-CCEEEEEE----------CCCcEEEEECCCCceeEEecccC--C
Q 005913          444 TIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQ-GHYFASSS----------HDRTARIWSMDRIQPLRIMAGHL--S  506 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~-g~~l~s~s----------~dg~v~lwd~~~~~~~~~~~~~~--~  506 (670)
                      .++++|-++.+.+...+-.    ...|.++.|..| +.++++|.          ..|.|.++.+...+.+.....+.  +
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            3667776666554433321    123555668777 77888875          24778888776644444443322  2


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC--CCeeeEE
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA--SGRCVTP  584 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~--~~~~~~~  584 (670)
                      .+.++.- -+|+++|.  -+..|++|+..+++.++.-..+..++..+...-.|..++.|..-+++.+.-.+  .|.....
T Consensus       831 av~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev  907 (1096)
T KOG1897|consen  831 AVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV  907 (1096)
T ss_pred             ceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence            3333321 36766665  45689999999998888888899999999999999999999988887766554  3334333


Q ss_pred             ee-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          585 LM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       585 ~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      -+ -+..+.+++.+- ++..++.+..+|.+.+-..++.
T Consensus       908 ArD~~p~Wmtaveil-~~d~ylgae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  908 ARDYNPNWMTAVEIL-DDDTYLGAENSGNLFTVRKDSD  944 (1096)
T ss_pred             ehhhCccceeeEEEe-cCceEEeecccccEEEEEecCC
Confidence            22 355667777765 4456666778888888777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.06  E-value=1.2  Score=50.18  Aligned_cols=190  Identities=13%  Similarity=0.068  Sum_probs=118.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCC-ccEe----------EEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVW----------DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~----------~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      +..++.++.++.|+-.|..+++.+-.+.... ..+.          .+++  .+..++.++.|+.+...|..+++.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4566677778888889999888776654311 1111          1122  2346777888999999999999988765


Q ss_pred             cccCCC-eeEEEEcC--CCCEEEEEEc------CCcEEEEECCCCcEEEEEecCCC------------------------
Q 005913          502 AGHLSD-VDCVRWHI--NCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRS------------------------  548 (670)
Q Consensus       502 ~~~~~~-v~~v~~~p--~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~------------------------  548 (670)
                      ...... -..+.-+|  .+..+++++.      +|.|+-+|..+|+.+..+..-..                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            421100 00111112  1234555543      68999999999998866532111                        


Q ss_pred             -------Ce-EEEEEcCCCCEEEEEECC-----C-----------eEEEEeCCCCeeeEEeeCCCcceEE---------E
Q 005913          549 -------MI-LSLAMSPDGRYMASGDED-----G-----------TIMMWDLASGRCVTPLMGHTSCVWT---------L  595 (670)
Q Consensus       549 -------~I-~~l~~sp~g~~l~sg~~d-----g-----------~I~iwDl~~~~~~~~~~~h~~~V~s---------l  595 (670)
                             .+ ..+++.|...+++.+..+     +           .|.-.|+++|+..-.++.....++.         +
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                   11 134666666666665422     2           6778899999988766642222222         2


Q ss_pred             EEcCCCC---EEEEEECCCcEEEEeCCCCccc
Q 005913          596 AYSCEGS---LLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       596 ~~s~~g~---~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      .+..+|+   .++.++.+|.+.+.|-.+++.+
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            2334665   7889999999999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.02  E-value=2.5  Score=44.50  Aligned_cols=144  Identities=17%  Similarity=0.171  Sum_probs=82.6

Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEE-EECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRL-WDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~i-wd~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                      ...+.++.+.|++.++++|. .|.+.. +|- .++ -..........++++.+.++++.++++ ..|.+++=+...|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            45688899999987776664 454443 222 222 222223344678999999999877665 4676654333444322


Q ss_pred             EEeeC----CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          583 TPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       583 ~~~~~----h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      .....    ....+.++.+.+++..++ ++.+|.|. .....+.            .+..+..........+.+.|..++
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~------------tW~~~~~~~~~~~~~~~~~~~~~~  314 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK------------TWEKDPVGEEVPSNFYKIVFLDPE  314 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC------------CCeECCcCCCCCcceEEEEEeCCC
Confidence            21111    123578899998877555 45567654 3333322            112221111223468889998888


Q ss_pred             cEEEEee
Q 005913          659 LLFAAGA  665 (670)
Q Consensus       659 ~~La~gs  665 (670)
                      ..+++|.
T Consensus       315 ~~~~~G~  321 (334)
T PRK13684        315 KGFVLGQ  321 (334)
T ss_pred             ceEEECC
Confidence            8887765

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.00  E-value=0.0029  Score=70.87  Aligned_cols=199  Identities=16%  Similarity=0.184  Sum_probs=118.9

Q ss_pred             eeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC--Cce-----eEEeeCCCccEeEEEEec---CCCEEEEEEC
Q 005913          415 TLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKL--NAN-----LVCYKGHNYPVWDVQFNP---QGHYFASSSH  483 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~--~~~-----~~~~~~h~~~V~~l~~sp---~g~~l~s~s~  483 (670)
                      ...+|..|.|-.+.|.... ..++  -.-|...+|++..  |+.     +........++.-+.|.|   +..++..+-.
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            3456777888888885422 1222  2336788898753  322     222233344556677776   5677888888


Q ss_pred             CCcEEEEECCCCceeEEecccCCCeeEEE-----------EcCCCCEEEEEEcCCcEEEEECC-----CCcEEEEEecCC
Q 005913          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVR-----------WHINCNYIATGSSDKTVRLWDVS-----SGECVRIFIGHR  547 (670)
Q Consensus       484 dg~v~lwd~~~~~~~~~~~~~~~~v~~v~-----------~~p~~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~~h~  547 (670)
                      ++++++..+++... ..+.+|...+..++           .+|||..+++.+.||.++.|.+.     .-.|+.....|.
T Consensus       204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            89999888765433 34445665554433           58999999999999998888764     334556666776


Q ss_pred             -CCeEEEEEcCCC---------CEEEEE-ECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC------------EE
Q 005913          548 -SMILSLAMSPDG---------RYMASG-DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS------------LL  604 (670)
Q Consensus       548 -~~I~~l~~sp~g---------~~l~sg-~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~------------~l  604 (670)
                       ++-.|.-|+.+-         .+++++ ..+..+++|....++|+-.  .....|..+. -++|.            .+
T Consensus       283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~--~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~  359 (1283)
T KOG1916|consen  283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLD--KLIDGVQIVG-PHDGEVTDLSMCQWMTTRL  359 (1283)
T ss_pred             CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhh--hcccceEeec-CCCccccchhhhHHHHHHH
Confidence             444444444321         234444 4456799999888887721  1122233332 12221            24


Q ss_pred             EEEECCCcEEEEeCC
Q 005913          605 ASGSADCTVKLWDVT  619 (670)
Q Consensus       605 ~sgs~Dg~I~iwd~~  619 (670)
                      ++-+.+++|.+|.-.
T Consensus       360 v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  360 VSRSVDGTIKIWQNR  374 (1283)
T ss_pred             HHhhhHHHHHHhhcc
Confidence            456677888888643

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.92  E-value=3.1  Score=44.79  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=59.3

Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEE-EEEcCC-----------------CCEEE-EE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS-LAMSPD-----------------GRYMA-SG  565 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~-l~~sp~-----------------g~~l~-sg  565 (670)
                      ...+.+++.+|++++.++..+=|.|.++|+.++..++.++|..+.=.. +.....                 ..+|+ -+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            345788999999999999888899999999999999988876653111 111100                 11232 35


Q ss_pred             ECCCeEEEEeCCCCeeeEEee
Q 005913          566 DEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       566 ~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      -..|.|-||++++|..+..+.
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEE
Confidence            678999999999998877664

>PHA03098 kelch-like protein; Provisional

Probab=95.84  E-value=0.3  Score=55.22  Aligned_cols=103  Identities=14%  Similarity=0.096  Sum_probs=51.4

Q ss_pred             CCCEEEEEEcC-----CcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEECC------CeEEEEeCCCCee--
Q 005913          516 NCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED------GTIMMWDLASGRC--  581 (670)
Q Consensus       516 ~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~sg~~d------g~I~iwDl~~~~~--  581 (670)
                      ++..++.|+.+     ..+..||..+++-...-...... -.++ ..-+++..+.||.+      ..+..||..+++-  
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            56677777755     35778888766533211100011 1112 22356666777632      4588999876532  


Q ss_pred             eEEeeCCCcceEEEEEcCCCCEEEEEECCC--------cEEEEeCCCC
Q 005913          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADC--------TVKLWDVTTS  621 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--------~I~iwd~~~~  621 (670)
                      +..+....... ++ ...++.+++.||.++        .+.+||..+.
T Consensus       421 ~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        421 GSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             cCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            22221111111 12 223566777776432        2677776653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.76  E-value=0.67  Score=46.17  Aligned_cols=157  Identities=17%  Similarity=0.228  Sum_probs=96.4

Q ss_pred             eEEEEcCCC-CEEEEEEcCCc-EEEEECCCCcEEEEEecCCCC--eEEEEEcCCCCEEEEEEC-----CCeEEEEeCCCC
Q 005913          509 DCVRWHINC-NYIATGSSDKT-VRLWDVSSGECVRIFIGHRSM--ILSLAMSPDGRYMASGDE-----DGTIMMWDLASG  579 (670)
Q Consensus       509 ~~v~~~p~~-~~l~tgs~dg~-I~iwd~~~~~~~~~~~~h~~~--I~~l~~sp~g~~l~sg~~-----dg~I~iwDl~~~  579 (670)
                      ..|+|||.. .-++.+-.-|+ ..++|....+...++....+.  .-.=.|||||.+|+..-.     .|.|-|||.+.+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            356777754 34555555554 467888777655444322111  112369999999998644     388999999855


Q ss_pred             -eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEE-eCC-------CCccccccccccCCcccccccccC--CCCCC
Q 005913          580 -RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW-DVT-------TSTKVLKTEEKSGTNRLRSLKTLP--TKSTP  648 (670)
Q Consensus       580 -~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iw-d~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  648 (670)
                       ..+.++..|.-....+.|.+||+.++.+  +|-|..- |..       +-++....-.. ....+-.-.+++  .+.-+
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfgR~~lNldsMePSlvlld~-atG~liekh~Lp~~l~~lS  227 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDA-ATGNLIEKHTLPASLRQLS  227 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEe--CCceecccccCccccchhhcCccEEEEec-cccchhhhccCchhhhhcc
Confidence             5667788888777899999999998877  4455555 222       11111111000 000011112344  45667


Q ss_pred             eEEEEEecCCcEEEEeeCCC
Q 005913          649 VYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       649 V~~l~fs~~~~~La~gs~dg  668 (670)
                      |..++..++|.+.+.+-+.|
T Consensus       228 iRHld~g~dgtvwfgcQy~G  247 (366)
T COG3490         228 IRHLDIGRDGTVWFGCQYRG  247 (366)
T ss_pred             eeeeeeCCCCcEEEEEEeeC
Confidence            99999999999988776654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.69  E-value=0.038  Score=39.61  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=29.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAK  382 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~  382 (670)
                      ...|.+++|+|...+||.|+.+|.|.||.++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            45699999999999999999999999999853

>PHA02790 Kelch-like protein; Provisional

Probab=95.50  E-value=0.6  Score=51.92  Aligned_cols=182  Identities=9%  Similarity=-0.018  Sum_probs=86.4

Q ss_pred             CCEEEEEeCC-----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC--CcEEEEECCCCceeEE--ecc
Q 005913          433 GDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRI--MAG  503 (670)
Q Consensus       433 ~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--g~v~lwd~~~~~~~~~--~~~  503 (670)
                      +..+++|+.+     .++..||..++.....-.-...........-+|...++||.+  .++..||..+.+-...  +..
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~  351 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK  351 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence            4445566543     256678877654332211111111111122367777888754  3577788655432211  111


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      .......+.  -+|+..+.|+.++   .+..||..+.+-...-......-...+..-+|+..+.|   |.+.+||..+++
T Consensus       352 ~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~  426 (480)
T PHA02790        352 PRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNT  426 (480)
T ss_pred             CCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCc
Confidence            111112222  3677777777553   47788887654432111000100111123346555655   357788887653


Q ss_pred             --eeEEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913          581 --CVTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS  621 (670)
Q Consensus       581 --~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~  621 (670)
                        .+..+.........+.  -+|.+.+.||.+     .+|.+||..++
T Consensus       427 W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        427 WTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             EeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence              2333322122222222  367788888765     34667776553

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.50  E-value=1.1  Score=44.67  Aligned_cols=143  Identities=14%  Similarity=0.200  Sum_probs=94.2

Q ss_pred             EEEEecC-CCEEEEEECCCc-EEEEECCCCceeEEecccCCC--eeEEEEcCCCCEEEEEEcC-----CcEEEEECCCC-
Q 005913          468 DVQFNPQ-GHYFASSSHDRT-ARIWSMDRIQPLRIMAGHLSD--VDCVRWHINCNYIATGSSD-----KTVRLWDVSSG-  537 (670)
Q Consensus       468 ~l~~sp~-g~~l~s~s~dg~-v~lwd~~~~~~~~~~~~~~~~--v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~-  537 (670)
                      .+.++|. ..-++.+-.-|+ ..++|.+..+....+....+.  .-.-.|||+|.+|...-.|     |.|-+||.+.+ 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            4677773 444555655554 567888776655444322111  1123689999999886543     78999999854 


Q ss_pred             cEEEEEecCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEeCCCCeeeEEee----CCCcceEEE
Q 005913          538 ECVRIFIGHRSMILSLAMSPDGRYMASGDE------------------DGTIMMWDLASGRCVTPLM----GHTSCVWTL  595 (670)
Q Consensus       538 ~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~------------------dg~I~iwDl~~~~~~~~~~----~h~~~V~sl  595 (670)
                      +.+..+..|.-....+.+.+||+.++.+..                  .-++.+.|..+|..+.+..    .+.-+|..+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence            456677788877889999999999987642                  1245566666676654322    244568888


Q ss_pred             EEcCCCCEEEEEECC
Q 005913          596 AYSCEGSLLASGSAD  610 (670)
Q Consensus       596 ~~s~~g~~l~sgs~D  610 (670)
                      +..+||.+++.+-..
T Consensus       232 d~g~dgtvwfgcQy~  246 (366)
T COG3490         232 DIGRDGTVWFGCQYR  246 (366)
T ss_pred             eeCCCCcEEEEEEee
Confidence            888888877766433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.48  E-value=3.4  Score=41.97  Aligned_cols=224  Identities=16%  Similarity=0.218  Sum_probs=125.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-----cCccCEEEEE
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-----GHSGPVYSAS  428 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~V~~l~  428 (670)
                      -+-++|+|.+.+-++....+...+||...........                     .......     ...+..+.+.
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~---------------------~L~vtiP~~~~~~~~~~PTGiV   83 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQD---------------------PLVVVIPAPPPLAAEGTPTGQV   83 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCcc---------------------ceEEEecCCCCCCCCCCccEEE
Confidence            4678999999888888888999999987321110000                     0011111     0123456666


Q ss_pred             EcCCCC------------EEEEEeCCCeEEEEeCCCCce-----eEEee-CCCccE-eEEEEec--CCCEEEEE-ECCCc
Q 005913          429 FSPLGD------------FILSSSADTTIRLWSTKLNAN-----LVCYK-GHNYPV-WDVQFNP--QGHYFASS-SHDRT  486 (670)
Q Consensus       429 ~sp~~~------------~L~s~s~Dg~I~lwd~~~~~~-----~~~~~-~h~~~V-~~l~~sp--~g~~l~s~-s~dg~  486 (670)
                      |+....            .++.+++||+|.-|.......     ...+. +....| ..+++..  .+.+|..+ -..++
T Consensus        84 fN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~  163 (336)
T TIGR03118        84 FNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGR  163 (336)
T ss_pred             EeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCc
Confidence            654322            367788999999998532222     12222 112222 3445443  34555444 36788


Q ss_pred             EEEEECCCCcee--EEecc-----cCCC--e---------eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--C
Q 005913          487 ARIWSMDRIQPL--RIMAG-----HLSD--V---------DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H  546 (670)
Q Consensus       487 v~lwd~~~~~~~--~~~~~-----~~~~--v---------~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h  546 (670)
                      |.++|-.-....  ..+..     ...+  |         +-..-.++.+.=+.|..-|.|-+||. .|+.++++..  .
T Consensus       164 IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~  242 (336)
T TIGR03118       164 IDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGR  242 (336)
T ss_pred             eEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCc
Confidence            888875422111  00100     0000  1         01111122222233344578999996 5788887742  2


Q ss_pred             CCCeEEEEEcC------CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC------cceEEEEEcC
Q 005913          547 RSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHT------SCVWTLAYSC  599 (670)
Q Consensus       547 ~~~I~~l~~sp------~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~------~~V~sl~~s~  599 (670)
                      -..-+.|+..|      .|.+|+---.||+|..||..+++.+..+....      ..++.|+|..
T Consensus       243 LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       243 LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            23456677766      57788887789999999999999888776543      3467788865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=0.16  Score=59.09  Aligned_cols=142  Identities=13%  Similarity=0.037  Sum_probs=91.7

Q ss_pred             cCEEEEEEcCCCCEEE--EEeCCCeEEEEeCCCCcee-----EEeeC------CCccEeEEEEecC-CCEEEEEECCCcE
Q 005913          422 GPVYSASFSPLGDFIL--SSSADTTIRLWSTKLNANL-----VCYKG------HNYPVWDVQFNPQ-GHYFASSSHDRTA  487 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~--s~s~Dg~I~lwd~~~~~~~-----~~~~~------h~~~V~~l~~sp~-g~~l~s~s~dg~v  487 (670)
                      -++..+...+|+...+  ..+.+-.|..||++....-     +-+..      ......++.|+|. -..++++..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4566666677766543  3344457888998754321     11111      1233567889884 3457778889999


Q ss_pred             EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec----CCCCeEEEEEcCCCCEEE
Q 005913          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~  563 (670)
                      ++..+........--.....++|++|+|.|+.+++|-..|++.-|-.. .+..+.+.+    ....|.|++|-....+++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            998876433322222345678999999999999999999999988753 332222221    146799999987766666


Q ss_pred             E
Q 005913          564 S  564 (670)
Q Consensus       564 s  564 (670)
                      +
T Consensus       260 v  260 (1405)
T KOG3630|consen  260 V  260 (1405)
T ss_pred             E
Confidence            5

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.34  E-value=4.1  Score=42.07  Aligned_cols=229  Identities=12%  Similarity=0.120  Sum_probs=106.7

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--eCC---CccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h---~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      -..++.+|.|.....-.++|. .++| +-..+.++.-...  ...   .....+|.|..+ ..+++| ..+ +.+...+.
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~Dg   89 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDG   89 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESST
T ss_pred             CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCC
Confidence            346899999995555566654 4544 2222222221111  111   234667777643 344444 444 44555555


Q ss_pred             CceeEEec---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913          495 IQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       495 ~~~~~~~~---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                      ++.-..+.   .-......+....++..++ .+..|.|+.=. ..|+. ........+.+..+..+++|++++++..-..
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence            54433322   1122333333333433333 33445443321 22322 2333455577899999999999988876666


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  650 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  650 (670)
                      ..-||-....-...-+.-...|.++.|+|++.+.+.+ ..|.|++=+.........          ..+.......-.+.
T Consensus       168 ~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~----------~~~~~~~~~~~~~l  236 (302)
T PF14870_consen  168 YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS----------EPIIPIKTNGYGIL  236 (302)
T ss_dssp             EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-------------B-TTSS--S-EE
T ss_pred             EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc----------cccCCcccCceeeE
Confidence            6788854322222222345789999999998776654 888888877222111100          11122223344589


Q ss_pred             EEEEecCCcEEEEeeC
Q 005913          651 SLQFSRRNLLFAAGAL  666 (670)
Q Consensus       651 ~l~fs~~~~~La~gs~  666 (670)
                      .++|.+++.+.|+|+.
T Consensus       237 d~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  237 DLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             EEEESSSS-EEEEEST
T ss_pred             EEEecCCCCEEEEeCC
Confidence            9999999988887765

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.31  E-value=6.8  Score=45.52  Aligned_cols=94  Identities=17%  Similarity=0.205  Sum_probs=57.8

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      .-.|..+.++|+|++|+..|..| |.|-.+.. +.....+.+....|.|=.+.-+..++                     
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------  141 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------  141 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc---------------------
Confidence            35789999999999999888766 55544432 11122233222233322222111111                     


Q ss_pred             EecccCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCC
Q 005913          500 IMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSG  537 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~  537 (670)
                       ...+...|..+.|||.   +..|++-++|+++|+||+...
T Consensus       142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence             1123456888999986   478889999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.30  E-value=3.5  Score=46.53  Aligned_cols=173  Identities=12%  Similarity=0.154  Sum_probs=89.5

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE----eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC----YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~----~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      +.+-.+.|+.+ ..|++...+|++++|++-.. .+..    .......|..+.+..+|-.+.+  .+|.+.+-.-...-.
T Consensus        84 ~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~  159 (829)
T KOG2280|consen   84 GELIGMGWSDD-EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK  159 (829)
T ss_pred             CCeeeecccCC-ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcch
Confidence            47889999965 45666789999999998632 2222    1222334555555556633333  345554443221112


Q ss_pred             eEEecc-cCCCeeEEEEc--CCCC---EEEEEE-cCC-cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913          498 LRIMAG-HLSDVDCVRWH--INCN---YIATGS-SDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       498 ~~~~~~-~~~~v~~v~~~--p~~~---~l~tgs-~dg-~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg  569 (670)
                      .+.+.. ..+...+.+|.  +++.   .++-.. ..+ .+..-+..+.+... +......+..+..||++++|+.-...|
T Consensus       160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~-~~~~~~~~~ki~VS~n~~~laLyt~~G  238 (829)
T KOG2280|consen  160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA-LSWPNSSVVKISVSPNRRFLALYTETG  238 (829)
T ss_pred             hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc-cCCCCceEEEEEEcCCcceEEEEecCC
Confidence            222221 11222222332  2211   111110 000 11111112222222 222235688899999999999999999


Q ss_pred             eEEEEeCCCCeeeEEee--CCCcceEEEEEcCC
Q 005913          570 TIMMWDLASGRCVTPLM--GHTSCVWTLAYSCE  600 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~--~h~~~V~sl~~s~~  600 (670)
                      .|.+-+....+++..+.  .|.- ...++|.-+
T Consensus       239 ~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgn  270 (829)
T KOG2280|consen  239 KIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGN  270 (829)
T ss_pred             cEEEEecchhhhhhccCCCCCCc-hHhceeecC
Confidence            99999988777666554  2322 225566433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.27  E-value=5.1  Score=46.91  Aligned_cols=153  Identities=11%  Similarity=0.145  Sum_probs=95.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccE-------------eEEEEec--CCCEEEEEEC----------CCc
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV-------------WDVQFNP--QGHYFASSSH----------DRT  486 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V-------------~~l~~sp--~g~~l~s~s~----------dg~  486 (670)
                      ++..++.++.|+.+.-.|..+++.+..+.. ++.|             ..+.-.|  .+..+++|+.          +|.
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            345788888899999999999988866542 1111             0111222  2345666643          688


Q ss_pred             EEEEECCCCceeEEeccc---------CC--------Ce-eEEEEcCCCCEEEEEE------------------cCCcEE
Q 005913          487 ARIWSMDRIQPLRIMAGH---------LS--------DV-DCVRWHINCNYIATGS------------------SDKTVR  530 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~---------~~--------~v-~~v~~~p~~~~l~tgs------------------~dg~I~  530 (670)
                      |+-+|.++++.+..+..-         .+        .+ ..+++.+....++.+.                  ..+.|.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            999999999988765411         00        11 2344555545544422                  124577


Q ss_pred             EEECCCCcEEEEEecCCCCe---------EEEEEcC-CCC---EEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          531 LWDVSSGECVRIFIGHRSMI---------LSLAMSP-DGR---YMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       531 iwd~~~~~~~~~~~~h~~~I---------~~l~~sp-~g~---~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      -.|..+|+....++.....+         .-+.+.. +|+   .++.++.+|.++++|.++|+.+...
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            78889999888776422111         1122322 563   7889999999999999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=95.21  E-value=0.72  Score=51.31  Aligned_cols=134  Identities=10%  Similarity=0.019  Sum_probs=67.1

Q ss_pred             CCCCEEEEEEcC--CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---eEEEEeCCCCeee--EEeeC
Q 005913          515 INCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TIMMWDLASGRCV--TPLMG  587 (670)
Q Consensus       515 p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg---~I~iwDl~~~~~~--~~~~~  587 (670)
                      -++...++|+.+  ..+..||..+++-...-.-........+..-+|+..+.||.++   .+..||..+.+-.  ..+..
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence            366677777754  4578888766543321111111111112223577777777553   4678887765322  12211


Q ss_pred             CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       588 h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      .......+  .-+|.+.+.|+   .+.+||..+.             .|..+..++........+  .-+|++.++|+.+
T Consensus       397 ~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~-------------~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~  456 (480)
T PHA02790        397 PHYKSCAL--VFGRRLFLVGR---NAEFYCESSN-------------TWTLIDDPIYPRDNPELI--IVDNKLLLIGGFY  456 (480)
T ss_pred             ccccceEE--EECCEEEEECC---ceEEecCCCC-------------cEeEcCCCCCCccccEEE--EECCEEEEECCcC
Confidence            11111112  23566666664   4677876542             234444443333233222  3477888888865


Q ss_pred             C
Q 005913          668 K  668 (670)
Q Consensus       668 g  668 (670)
                      +
T Consensus       457 ~  457 (480)
T PHA02790        457 R  457 (480)
T ss_pred             C
Confidence            3

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.12  E-value=0.072  Score=38.18  Aligned_cols=31  Identities=19%  Similarity=0.307  Sum_probs=28.5

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTK  451 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~  451 (670)
                      ...|.+++|+|..++||.|+.+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4579999999999999999999999999984

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.02  E-value=0.72  Score=50.46  Aligned_cols=149  Identities=12%  Similarity=0.225  Sum_probs=91.5

Q ss_pred             CccEeEEEEecCCCEE-EEEE--CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCC----CEEEEEEcCCcEEEEECC
Q 005913          463 NYPVWDVQFNPQGHYF-ASSS--HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC----NYIATGSSDKTVRLWDVS  535 (670)
Q Consensus       463 ~~~V~~l~~sp~g~~l-~s~s--~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~----~~l~tgs~dg~I~iwd~~  535 (670)
                      -.|+..++|. ||+.+ ++.-  .+|.+++=|.       ..-|....|..+.|.|-+    ..+++....+.|.+|.+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3578899998 55544 4432  3343333322       123455678999999853    356666678899999885


Q ss_pred             -----CCcEEEEEecC-CC--C--eEEEEEcCCCCEEEEEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEE
Q 005913          536 -----SGECVRIFIGH-RS--M--ILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLL  604 (670)
Q Consensus       536 -----~~~~~~~~~~h-~~--~--I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l  604 (670)
                           +++.+..-..+ ..  +  -..+.|+|....|+.-..+..-.+++.+.. ..++.--...+-|.+.+|.+||+.|
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence                 22222221111 11  1  245679999988888776666566776543 2333222456789999999999988


Q ss_pred             EEEECC-CcEEEEeCC
Q 005913          605 ASGSAD-CTVKLWDVT  619 (670)
Q Consensus       605 ~sgs~D-g~I~iwd~~  619 (670)
                      +.+-.. =.-+|||-.
T Consensus       171 VVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEeCCeEEEEEecCc
Confidence            776443 245688743

>PRK13684 Ycf48-like protein; Provisional

Probab=94.88  E-value=2.7  Score=44.31  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             CccEeEEEEecCCCEEEEEECCCcEEE-EECCCCc-eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE
Q 005913          463 NYPVWDVQFNPQGHYFASSSHDRTARI-WSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV  540 (670)
Q Consensus       463 ~~~V~~l~~sp~g~~l~s~s~dg~v~l-wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~  540 (670)
                      ...+.++.+.|++.+++++. .|.+.. ++ +.++ -..........+.++.+.++++.+++| ..|.+++=....|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            45688899999887665554 454432 22 2222 122223344678899999999887776 4576654333344332


Q ss_pred             EEEec----CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee---CCCcceEEEEEcCCCCEEEEEECCCcE
Q 005913          541 RIFIG----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADCTV  613 (670)
Q Consensus       541 ~~~~~----h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~---~h~~~V~sl~~s~~g~~l~sgs~Dg~I  613 (670)
                      .....    ....+..+.+.|++..++ ++.+|.|. .....|+.-....   .-....+.+.|..++..++ .+..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            21111    123478899999877555 44567554 3444444333332   2223577788876665544 5567888


Q ss_pred             EEEe
Q 005913          614 KLWD  617 (670)
Q Consensus       614 ~iwd  617 (670)
                      --|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            7765

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.79  E-value=0.26  Score=57.36  Aligned_cols=141  Identities=13%  Similarity=0.093  Sum_probs=89.7

Q ss_pred             ccEeEEEEecCCCEEEEE--ECCCcEEEEECCCCceeE-----Eec------ccCCCeeEEEEcCCCC-EEEEEEcCCcE
Q 005913          464 YPVWDVQFNPQGHYFASS--SHDRTARIWSMDRIQPLR-----IMA------GHLSDVDCVRWHINCN-YIATGSSDKTV  529 (670)
Q Consensus       464 ~~V~~l~~sp~g~~l~s~--s~dg~v~lwd~~~~~~~~-----~~~------~~~~~v~~v~~~p~~~-~l~tgs~dg~I  529 (670)
                      .+|..+...+|+...++.  +.+-.|..||++.....+     .+.      .......|+.|+|.-. ..++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            456666667776654443  344478899987532211     111      1233467889988643 35566789999


Q ss_pred             EEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC----CCcceEEEEEcCCCCEE
Q 005913          530 RLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG----HTSCVWTLAYSCEGSLL  604 (670)
Q Consensus       530 ~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~----h~~~V~sl~~s~~g~~l  604 (670)
                      ++..+..... +..+ .-....+|++|+|.|+.++.|...|++.-|-.. ++....+..    ....|.+++|-....++
T Consensus       181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence            9887653322 2222 344568999999999999999999999988753 333333322    13679999997665555


Q ss_pred             EE
Q 005913          605 AS  606 (670)
Q Consensus       605 ~s  606 (670)
                      ++
T Consensus       259 vv  260 (1405)
T KOG3630|consen  259 VV  260 (1405)
T ss_pred             EE
Confidence            54

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.68  E-value=0.25  Score=50.73  Aligned_cols=149  Identities=17%  Similarity=0.186  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCC-CchhhcccccccccccCChhhHHHHHHHHHHHHhcc
Q 005913            3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDIL-NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSS   81 (670)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~   81 (670)
                      ...++++|.+||-+.||..|-..|-+++.+..-.    ...+. .--.|.+.|.            ...+.-.-.|+...
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlv----D~Dv~~~~~~I~~sll------------~~~l~~~Lswc~eh  178 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLV----DSDVYKRAYGIRDSLL------------AGELEPALSWCKEH  178 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhH----hHHHHHHHHHHHHHHH------------hcchHHHHHHHHHH
Confidence            3568999999999999999999999888764320    00000 0001122221            12245567788766


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhhhccCHHHHHhh-cCceEE
Q 005913           82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLR-HSKVNI  160 (670)
Q Consensus        82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~k~~v  160 (670)
                      =-..|.+=+.|=|-+=..=|++||.-+...+|.+|++||=.-+...|..||+.+.+...--         .|- ..||..
T Consensus       179 k~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~---------~~t~~sky~~  249 (389)
T KOG0396|consen  179 KVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFP---------KYTSSSKYLN  249 (389)
T ss_pred             HHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCc---------cccCcccccC
Confidence            5555555566778888899999999999999999999999999889999999876654100         111 355777


Q ss_pred             EEchhhHHHHH-HHHhh
Q 005913          161 KICQYSYELLL-QYLHK  176 (670)
Q Consensus       161 ~~~~~~~~~l~-~~l~~  176 (670)
                      -++..-++-|- .|+++
T Consensus       250 l~~~~rw~~l~~lF~s~  266 (389)
T KOG0396|consen  250 LLTADRWSVLADLFLSE  266 (389)
T ss_pred             cccHHHHHHHHHHhhHH
Confidence            77777777665 35544

>PLN02153 epithiospecifier protein

Probab=94.51  E-value=6.1  Score=41.69  Aligned_cols=66  Identities=6%  Similarity=0.036  Sum_probs=33.0

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEE--ecc---cCCCeeEEEEcCCCCEEEEEEcC-----------CcEEEE
Q 005913          474 QGHYFASSSHD-----RTARIWSMDRIQPLRI--MAG---HLSDVDCVRWHINCNYIATGSSD-----------KTVRLW  532 (670)
Q Consensus       474 ~g~~l~s~s~d-----g~v~lwd~~~~~~~~~--~~~---~~~~v~~v~~~p~~~~l~tgs~d-----------g~I~iw  532 (670)
                      ++..++.|+.+     ..+.+||..+.+-...  +..   ........+..-+++.++.|+.+           ..|.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            56667777653     3577888776432221  100   11111111122355666666643           247788


Q ss_pred             ECCCCcE
Q 005913          533 DVSSGEC  539 (670)
Q Consensus       533 d~~~~~~  539 (670)
                      |..+.+-
T Consensus       165 d~~~~~W  171 (341)
T PLN02153        165 NIADGKW  171 (341)
T ss_pred             ECCCCeE
Confidence            8876644

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.40  E-value=7.8  Score=40.75  Aligned_cols=231  Identities=14%  Similarity=0.150  Sum_probs=114.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEe----eCCCccEeEEEEecC----CCEEEEEECC-------
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCY----KGHNYPVWDVQFNPQ----GHYFASSSHD-------  484 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~----~~h~~~V~~l~~sp~----g~~l~s~s~d-------  484 (670)
                      ..++|+|.|+|+.+++ ...|.|++++. .+..   +...    .........++++|+    +...++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999987665 55999999993 3332   2222    123456789999994    4333333321       


Q ss_pred             -CcEEEEECCCC-------cee-EEecc---cCCCeeEEEEcCCCCEEEEEEcCC-------------cEEEEECCCCcE
Q 005913          485 -RTARIWSMDRI-------QPL-RIMAG---HLSDVDCVRWHINCNYIATGSSDK-------------TVRLWDVSSGEC  539 (670)
Q Consensus       485 -g~v~lwd~~~~-------~~~-~~~~~---~~~~v~~v~~~p~~~~l~tgs~dg-------------~I~iwd~~~~~~  539 (670)
                       ..|.-|.....       +.+ ..+..   .......++|.|+|.+.++.+..+             .|.-.+.. ++.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~  159 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI  159 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence             23444444332       111 11122   223456799999997666654332             23223322 110


Q ss_pred             -------------EEE-EecCCCCeEEEEEcCC-CCEEEE-EECCCeEEEEeCCCC------------------------
Q 005913          540 -------------VRI-FIGHRSMILSLAMSPD-GRYMAS-GDEDGTIMMWDLASG------------------------  579 (670)
Q Consensus       540 -------------~~~-~~~h~~~I~~l~~sp~-g~~l~s-g~~dg~I~iwDl~~~------------------------  579 (670)
                                   ... -.++.. ...++|+|. |.++++ .+.++.=.|--+..|                        
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence                         011 123322 457999998 665554 223322222212111                        


Q ss_pred             -----eeeEEeeCCCcceEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCC
Q 005913          580 -----RCVTPLMGHTSCVWTLAYSC-------EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST  647 (670)
Q Consensus       580 -----~~~~~~~~h~~~V~sl~~s~-------~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  647 (670)
                           .++..+..| ..+..+.|..       .|.++++.-..+.|....+.........           ...+.....
T Consensus       239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~  306 (331)
T PF07995_consen  239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEE-----------EEFLGGFGG  306 (331)
T ss_dssp             -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE-----------EEECTTSSS
T ss_pred             CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccce-----------EEccccCCC
Confidence                 122223333 4566677653       4456666666667777777544322111           111234444


Q ss_pred             CeEEEEEecCCcEEEEeeCCCC
Q 005913          648 PVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       648 ~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .+..+++.|||.++++-..+|.
T Consensus       307 r~~~v~~~pDG~Lyv~~d~~G~  328 (331)
T PF07995_consen  307 RPRDVAQGPDGALYVSDDSDGK  328 (331)
T ss_dssp             -EEEEEEETTSEEEEEE-TTTT
T ss_pred             CceEEEEcCCCeEEEEECCCCe
Confidence            7999999999999888776664

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.33  E-value=2.3  Score=48.59  Aligned_cols=174  Identities=13%  Similarity=0.126  Sum_probs=98.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      -.+..+|+.=   .++|+++ ..+.|.||+.............  .............+.   ...... -...|+.|..
T Consensus        39 fKNNLtalsq---~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~--~~~~t~p~~~~~~D~---~~s~~p-~PHtIN~i~v  108 (717)
T PF08728_consen   39 FKNNLTALSQ---RNLLFIA-YQSEIYVYDPDGLTQLPSRKPC--LRFDTKPEFTSTPDR---LISTWP-FPHTINFIKV  108 (717)
T ss_pred             cccceeEEec---CCEEEEE-ECCEEEEEecCCcccccccccc--cccccCccccccccc---cccCCC-CCceeeEEEe
Confidence            3444555543   7788887 4789999998764331110000  000000000000000   011011 2234555544


Q ss_pred             cC--CCCEEEEEeCCCeEEEEeCCC-------C----c---------eeEEeeCCCccEeEEEEe--cCCCEEEEEECCC
Q 005913          430 SP--LGDFILSSSADTTIRLWSTKL-------N----A---------NLVCYKGHNYPVWDVQFN--PQGHYFASSSHDR  485 (670)
Q Consensus       430 sp--~~~~L~s~s~Dg~I~lwd~~~-------~----~---------~~~~~~~h~~~V~~l~~s--p~g~~l~s~s~dg  485 (670)
                      ..  +...|+.|..||.|.+|.+++       .    .         +...+. -...+|+++++  ...+++|+++...
T Consensus       109 ~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~  187 (717)
T PF08728_consen  109 GDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQ  187 (717)
T ss_pred             cccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCc
Confidence            33  445799999999999997531       0    0         112222 24579999999  7888888888888


Q ss_pred             cEEEEECCCC--c-eeEEecccCCCeeEEEEcCCC-----C-EEEEEEcCCcEEEEEC
Q 005913          486 TARIWSMDRI--Q-PLRIMAGHLSDVDCVRWHINC-----N-YIATGSSDKTVRLWDV  534 (670)
Q Consensus       486 ~v~lwd~~~~--~-~~~~~~~~~~~v~~v~~~p~~-----~-~l~tgs~dg~I~iwd~  534 (670)
                      .|.||-+...  + ....-..+...|-+|+|-++.     . ++++++-.|.+.+|++
T Consensus       188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888765431  1 111111356678999997543     2 7888889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.05  E-value=3.1  Score=40.45  Aligned_cols=131  Identities=11%  Similarity=0.039  Sum_probs=80.2

Q ss_pred             EEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECCCcEEEEE--C
Q 005913          425 YSASFSPLGDFILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS--M  492 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~dg~v~lwd--~  492 (670)
                      +.-..+|+|++.+-.-.         .|.++.|-..  ..+..+...-.--..++|+.+.+.|. +-+.+-+|.-||  +
T Consensus       112 NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~  189 (310)
T KOG4499|consen  112 NDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC  189 (310)
T ss_pred             ccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence            33456788887432221         2344444432  12222222222234678887666554 445667787787  4


Q ss_pred             CCCc-----eeEEecc----cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcC
Q 005913          493 DRIQ-----PLRIMAG----HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP  557 (670)
Q Consensus       493 ~~~~-----~~~~~~~----~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp  557 (670)
                      .++.     .+..+..    ..-....++...+|+..++.-..++|...|..+|+.+..+.-....|+|++|--
T Consensus       190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            4432     2222221    111233455567899999999999999999999999999988889999999963

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=93.99  E-value=0.13  Score=49.81  Aligned_cols=169  Identities=14%  Similarity=0.211  Sum_probs=103.2

Q ss_pred             ChHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhcccccccccccCChhhHHHHHHHHHHHHhc
Q 005913            2 DELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYS   80 (670)
Q Consensus         2 ~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~   80 (670)
                      ..+|+|++|++||---||..+-+.|..|+....+...+.   -+.+- .|...|     .   -.+...|..++.+---.
T Consensus        25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~---~~~eR~~Ir~~I-----~---~G~Ie~Aie~in~l~Pe   93 (228)
T KOG2659|consen   25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLD---SMDERLQIRRAI-----E---EGQIEEAIEKVNQLNPE   93 (228)
T ss_pred             chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchh---hHhHHHHHHHHH-----H---hccHHHHHHHHHHhChH
Confidence            568999999999999999999999999988765311110   00000 111111     1   11344555555443322


Q ss_pred             cccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHH---hhhHHHHHHHhcCCChhhhccCHHHHHhhcCc
Q 005913           81 SLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE---MMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSK  157 (670)
Q Consensus        81 ~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k  157 (670)
                      -||.-+    .|.|=+-..-+++||..|..++|-.|+..--.-+.   ..+.+.+++.-.+---+.-+..|.+. +-...
T Consensus        94 iLd~n~----~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s  168 (228)
T KOG2659|consen   94 ILDTNR----ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQS  168 (228)
T ss_pred             HHccch----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHH
Confidence            233222    26777777889999999999999999988655542   13556666533332112223344444 44566


Q ss_pred             eEEEEchhhHHHHHHHHhhCCcchHhHhh
Q 005913          158 VNIKICQYSYELLLQYLHKTQSTKMLGII  186 (670)
Q Consensus       158 ~~v~~~~~~~~~l~~~l~~~~~~~~~~i~  186 (670)
                      |+-++....-.-++.+.+......+..|+
T Consensus       169 ~R~kvA~~vN~aiL~~~~~~~~~~l~~ll  197 (228)
T KOG2659|consen  169 LRQKVASEVNSAILASQEHESEPKLPFLL  197 (228)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            67777777777777777766555666665

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.98  E-value=0.049  Score=61.49  Aligned_cols=179  Identities=19%  Similarity=0.220  Sum_probs=104.9

Q ss_pred             CCeEEEEeCCCCc-eeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCC--Cce-----eEEecccCCCeeEEE
Q 005913          442 DTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR--IQP-----LRIMAGHLSDVDCVR  512 (670)
Q Consensus       442 Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~--~~~-----~~~~~~~~~~v~~v~  512 (670)
                      .+-|++-+..+.- .....++..+.|-++.|.. +...+.  -.-|.+.+|+++-  |+.     +.......+++.-|.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            3446666544321 1123445566777777743 111111  2236788998763  322     223334445666677


Q ss_pred             EcC---CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEE-----------EcCCCCEEEEEECCCeEEEEeCC-
Q 005913          513 WHI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA-----------MSPDGRYMASGDEDGTIMMWDLA-  577 (670)
Q Consensus       513 ~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~-----------~sp~g~~l~sg~~dg~I~iwDl~-  577 (670)
                      |.|   +.-++.++-.++.|++....+... ..+.+|...++.++           .||||..+++++.||.+++|.+- 
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence            764   667888888899999877654332 34455665554433           69999999999999998888653 


Q ss_pred             ----CCeeeEEeeCCCc-ceEEEEEcCCC---------CEEEEEEC-CCcEEEEeCCCCcc
Q 005913          578 ----SGRCVTPLMGHTS-CVWTLAYSCEG---------SLLASGSA-DCTVKLWDVTTSTK  623 (670)
Q Consensus       578 ----~~~~~~~~~~h~~-~V~sl~~s~~g---------~~l~sgs~-Dg~I~iwd~~~~~~  623 (670)
                          .-+|+...+.|.+ +-.|.-++.+.         .++++++. +..+++|....-+.
T Consensus       267 ~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C  327 (1283)
T KOG1916|consen  267 TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC  327 (1283)
T ss_pred             eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence                3356667777773 32222233211         24455543 45688998665444

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.86  E-value=1.6  Score=49.41  Aligned_cols=110  Identities=12%  Similarity=0.056  Sum_probs=73.0

Q ss_pred             cEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-ccCCCeeEEEEc--CCCCEEEEEEcCCcEEEEECC-----C
Q 005913          465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVS-----S  536 (670)
Q Consensus       465 ~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-~~~~~v~~v~~~--p~~~~l~tgs~dg~I~iwd~~-----~  536 (670)
                      ...-+.-+.-+..-++-+...++.|||.+.+.....-. ...+.|.++.|.  |+|+.+++.+-.+.|.+|.-.     .
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444455545444444445689999998876443222 346789999996  789999988889999998542     1


Q ss_pred             ----CcEEEEE--ecCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          537 ----GECVRIF--IGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       537 ----~~~~~~~--~~h~-~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                          ...++.+  ..|+ .+|.+..|.++|..++.+|  +.+.|+|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence                1223322  2343 5799999999997766554  56888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.58  E-value=2.8  Score=50.56  Aligned_cols=72  Identities=19%  Similarity=0.212  Sum_probs=44.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +..++.+..+...+.. +.+..-+.+-+|+.........+.....     .++.++..++++..||.+.+||+..+..
T Consensus       197 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhcccccc-----cCccCCceEEEEEecCCEEeeecCCCce
Confidence            3444555554443333 3344556777777655443333322111     1278899999999999999999998754

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.54  E-value=9.2  Score=40.40  Aligned_cols=17  Identities=18%  Similarity=0.188  Sum_probs=12.6

Q ss_pred             EEEecCCcEEEEeeCCC
Q 005913          652 LQFSRRNLLFAAGALSK  668 (670)
Q Consensus       652 l~fs~~~~~La~gs~dg  668 (670)
                      .+..-++.++++|+.+.
T Consensus       316 ~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       316 VSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EEEEcCCEEEEEeccCC
Confidence            34566888999998764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.33  E-value=14  Score=39.90  Aligned_cols=142  Identities=13%  Similarity=0.100  Sum_probs=80.8

Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe-----ee
Q 005913          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-----CV  582 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~-----~~  582 (670)
                      ...+...+++.++++|.....++-||-....-...-......++++.+.++|..++++ ..|.+. |....+.     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence            3445567888877777655444455532211122223345678999999999887766 455543 3334443     22


Q ss_pred             EEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913          583 TPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL  660 (670)
Q Consensus       583 ~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~  660 (670)
                      .....  ....+.++.|.+++..++ ++..|.+.... ..++            .+.....-..-..+++.+.|.+++..
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~------------tW~~~~~~~~~~~~ly~v~f~~~~~g  384 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGK------------SWKRDKGADNIAANLYSVKFFDDKKG  384 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCc------------ceeEccccCCCCcceeEEEEcCCCce
Confidence            22221  123588999998876554 55677666553 2222            11111111223457899999998888


Q ss_pred             EEEee
Q 005913          661 FAAGA  665 (670)
Q Consensus       661 La~gs  665 (670)
                      +++|.
T Consensus       385 ~~~G~  389 (398)
T PLN00033        385 FVLGN  389 (398)
T ss_pred             EEEeC
Confidence            88764

>PLN02193 nitrile-specifier protein

Probab=93.31  E-value=15  Score=40.82  Aligned_cols=144  Identities=9%  Similarity=0.026  Sum_probs=70.0

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEecc---cCCC-eeEEEEcCCCCEEEEEEcCC-----cEEEEECCCCcE
Q 005913          474 QGHYFASSSHD-----RTARIWSMDRIQPLRIMAG---HLSD-VDCVRWHINCNYIATGSSDK-----TVRLWDVSSGEC  539 (670)
Q Consensus       474 ~g~~l~s~s~d-----g~v~lwd~~~~~~~~~~~~---~~~~-v~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~~~  539 (670)
                      ++..++.|+.+     ..+..||+.+.+-...-..   .... -.+++. -+++.++.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            55666777654     3577888876543221111   0011 112222 2556666666543     467788776543


Q ss_pred             EEEEe-----cCCCCeEEEEEcCCCCEEEEEECC----CeEEEEeCCCCeeeEE--ee-CCC-cceEEEEEcCCCCEEEE
Q 005913          540 VRIFI-----GHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGRCVTP--LM-GHT-SCVWTLAYSCEGSLLAS  606 (670)
Q Consensus       540 ~~~~~-----~h~~~I~~l~~sp~g~~l~sg~~d----g~I~iwDl~~~~~~~~--~~-~h~-~~V~sl~~s~~g~~l~s  606 (670)
                      ...-.     ...... +++ .-+++.++.++.+    ..+.+||+.+.+-...  +. ... ....+++ .-++++++.
T Consensus       307 ~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~  383 (470)
T PLN02193        307 FHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIF  383 (470)
T ss_pred             EeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEE
Confidence            32111     001111 122 2256777777655    4589999887643221  10 011 1111222 235677777


Q ss_pred             EECC--------------CcEEEEeCCCC
Q 005913          607 GSAD--------------CTVKLWDVTTS  621 (670)
Q Consensus       607 gs~D--------------g~I~iwd~~~~  621 (670)
                      |+.+              +.+.+||..+.
T Consensus       384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        384 GGEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             CCccCCccccccCccceeccEEEEEcCcC
Confidence            7753              24677776653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.31  E-value=1.8  Score=49.01  Aligned_cols=112  Identities=11%  Similarity=0.119  Sum_probs=71.6

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEc--CCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYS--CEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s--~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      ..++-+.-|.-++.-++-+....+.|||.+.+.....-. ...+.|..+.|.  |+|+.+.+.|..+.|.+|--....-.
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            345555566656555555556789999999887544332 346789999984  68999999999999999864321100


Q ss_pred             cccccccCCccccccccc---CCCCCCeEEEEEecCCcEEEEee
Q 005913          625 LKTEEKSGTNRLRSLKTL---PTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~---~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                            .....+..+..+   .....+|.+..|.++|.++++++
T Consensus       110 ------~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  110 ------NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             ------cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence                  011111222211   12235799999999998776554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.92  E-value=1.5  Score=47.14  Aligned_cols=142  Identities=15%  Similarity=0.190  Sum_probs=92.9

Q ss_pred             CCCE-EEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC-------EEEEEEcCCcEEEEECCC-CcEEEEEe
Q 005913          474 QGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-------YIATGSSDKTVRLWDVSS-GECVRIFI  544 (670)
Q Consensus       474 ~g~~-l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-------~l~tgs~dg~I~iwd~~~-~~~~~~~~  544 (670)
                      +... +..|+....++-.|++.|+.+.....|...  -+.|.|...       .-++|-++..|.-.|.+- |..+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            3444 344556678888899999999888877544  577777432       234566677777777763 33332221


Q ss_pred             cCCCCeEEEEEcC----CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          545 GHRSMILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       545 ~h~~~I~~l~~sp----~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                       .....+.-.||.    ...++|+|+..|-|++||.-..+.-..+.+....|..+..+.+|.++++.+. ..+.+-|+.
T Consensus       556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence             122222223332    3459999999999999996444444445667788999999999998776664 467777764

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.57  E-value=6.3  Score=38.12  Aligned_cols=102  Identities=14%  Similarity=0.288  Sum_probs=64.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCC--ceeEEeeCCCccEeEEEEecCCCEEEEEECC---C---cEEEE-ECC----CCceeE-
Q 005913          434 DFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---R---TARIW-SMD----RIQPLR-  499 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---g---~v~lw-d~~----~~~~~~-  499 (670)
                      +.|+.+...+.|.+|++...  .....+.. -+.|..+.++..|.|++|--.+   .   .+|+| +++    ..++++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            55555566678999999833  33455554 3789999999999999996322   2   56765 222    223332 


Q ss_pred             Eeccc---------------------CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q 005913          500 IMAGH---------------------LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG  537 (670)
Q Consensus       500 ~~~~~---------------------~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~  537 (670)
                      .+.||                     ...+.|++..|...-|++|+ ++.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            22221                     23567888887655566665 567889987643

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.48  E-value=4.4  Score=47.01  Aligned_cols=94  Identities=14%  Similarity=0.233  Sum_probs=58.6

Q ss_pred             CccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE
Q 005913          463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR  541 (670)
Q Consensus       463 ~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~  541 (670)
                      ...|..|.++|+|++++..|..| |.|..+-. ......+.+....|.|-.+.-+..++ .                   
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~-------------------  142 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-T-------------------  142 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-c-------------------
Confidence            45688899999999999888754 44444421 11112233333344443332221111 1                   


Q ss_pred             EEecCCCCeEEEEEcCC---CCEEEEEECCCeEEEEeCCCC
Q 005913          542 IFIGHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       542 ~~~~h~~~I~~l~~sp~---g~~l~sg~~dg~I~iwDl~~~  579 (670)
                        ..+...|..+.|+|.   +..|+.-+.|+.+++||+...
T Consensus       143 --~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  143 --SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             --CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence              123456888999995   589999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.45  E-value=13  Score=37.49  Aligned_cols=257  Identities=12%  Similarity=0.120  Sum_probs=138.3

Q ss_pred             ccceecCCCCCC-ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          329 RNRVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       329 ~~~~~l~~~~~p-s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      +..+++-..+.| +.....+.+..+--.|+..|  |++..++.-|--.-+.|+.......                    
T Consensus       105 ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~--------------------  162 (370)
T COG5276         105 SSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQ--------------------  162 (370)
T ss_pred             CCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCce--------------------
Confidence            334444444444 33444566665556666666  7777777655556678877532211                    


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCC
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                           ..-.+....+.-..++.|  |++-..+..|+-+.+.|+.......-...  ....+.++..+++..+++..  +-
T Consensus       163 -----lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~e  233 (370)
T COG5276         163 -----LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DE  233 (370)
T ss_pred             -----eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--cc
Confidence                 111222233333556666  78877888899999999986544332221  12257777777776665554  34


Q ss_pred             cEEEEECCCCceeEEecc-cCCCeeEE-EEcCCCCEEEEEEcCCcEEEEECCCCcEEEE---EecCCCCeEEEEEcCCCC
Q 005913          486 TARIWSMDRIQPLRIMAG-HLSDVDCV-RWHINCNYIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGR  560 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~-~~~~v~~v-~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~---~~~h~~~I~~l~~sp~g~  560 (670)
                      -+.+-|.++.+....+.. ....+.|+ .+.-.+++......+.-+-+.|+.+......   +......-..+..+  |.
T Consensus       234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~  311 (370)
T COG5276         234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GN  311 (370)
T ss_pred             ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cC
Confidence            577778777664444431 11222222 3334566666666666677777664332211   11111122333333  44


Q ss_pred             EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      ++..+..+ ...+-|...-+.+....+....+.+++.+-+.+.+.+...++-+.||+..
T Consensus       312 y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         312 YNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             eeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence            44444443 34444544333332222333334455555566688888899999999853

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.42  E-value=15  Score=39.36  Aligned_cols=16  Identities=19%  Similarity=0.165  Sum_probs=10.5

Q ss_pred             EEecCCcEEEEeeCCC
Q 005913          653 QFSRRNLLFAAGALSK  668 (670)
Q Consensus       653 ~fs~~~~~La~gs~dg  668 (670)
                      +..-++.++++|+...
T Consensus       339 av~~~~~iyv~GG~~~  354 (376)
T PRK14131        339 SVSWNNGVLLIGGETA  354 (376)
T ss_pred             EEEeCCEEEEEcCCCC
Confidence            4455677888887643

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.36  E-value=6  Score=42.71  Aligned_cols=142  Identities=12%  Similarity=0.126  Sum_probs=89.2

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-------CEEEEEECCCcEEEEECCC-CceeEEec
Q 005913          432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-------HYFASSSHDRTARIWSMDR-IQPLRIMA  502 (670)
Q Consensus       432 ~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-------~~l~s~s~dg~v~lwd~~~-~~~~~~~~  502 (670)
                      +..+|+ .|..-..++-.|++.|+.+.....|..-  -+.|.|+.       ..-++|-.+..|.-.|.+- +..+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            344443 4555566777788888888888877654  47777742       1234455556666666542 22221111


Q ss_pred             ----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          503 ----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       503 ----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                          .......|.. ...+.|+++++..|-|++||--..+....+.+-...|-.+..+.+|.++++.+ ...+.+-|++
T Consensus       556 sKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             ehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence                0112222322 23456999999999999999655444445566677899999999999887665 4578888864

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.27  E-value=5.9  Score=37.92  Aligned_cols=172  Identities=16%  Similarity=0.118  Sum_probs=92.9

Q ss_pred             CCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEE-EECCCcEEEEECCCCceeEEecccCCCe
Q 005913          432 LGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRTARIWSMDRIQPLRIMAGHLSDV  508 (670)
Q Consensus       432 ~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s-~s~dg~v~lwd~~~~~~~~~~~~~~~~v  508 (670)
                      +|.++.+.+.  ...|++||+.+++.+..-+-....+..=-...-|.+|.. .-.+|....+|.++.+.+..+.- .+.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            4455555554  346999999988776544322111111001111222222 23678889999888777765542 2333


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--CCCCe---EEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMI---LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~I---~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      ..++  .++..|+.++...+++.-|..+.........  ...+|   .-+.|- +|...|-.-.+..|...|..+|+.+.
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            3333  3555576666566777777665443332221  11222   223332 45555555555666667777777665


Q ss_pred             Eee------------CCCcceEEEEEcCCC-CEEEEE
Q 005913          584 PLM------------GHTSCVWTLAYSCEG-SLLASG  607 (670)
Q Consensus       584 ~~~------------~h~~~V~sl~~s~~g-~~l~sg  607 (670)
                      .+.            .|......+++.|++ +++++|
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            442            234556788998877 455555

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.90  E-value=20  Score=38.36  Aligned_cols=118  Identities=12%  Similarity=0.162  Sum_probs=79.5

Q ss_pred             cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~----~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      ...|+|.++.||+|.+.||+--.+.+|.+++....+..    ...+..+..|....|+.. .-+|..+..| +-+|.+..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            35579999999999999999999999999998543322    223334556889999866 4455554433 55665432


Q ss_pred             -CceeEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCc
Q 005913          495 -IQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGE  538 (670)
Q Consensus       495 -~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~  538 (670)
                       ...++..+.|...|+-..|.++.+.++.++.  .+++.=+-++++.
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence             3355666778888999999998886655443  3344334444443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.71  E-value=0.07  Score=56.59  Aligned_cols=135  Identities=12%  Similarity=0.124  Sum_probs=91.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEE
Q 005913          358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL  437 (670)
Q Consensus       358 ~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~  437 (670)
                      .|-+.+.-++.++.+-.+..||-..                              ....-...++....++|..+++.++
T Consensus        41 ~w~~e~~nlavaca~tiv~~YD~ag------------------------------q~~le~n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   41 RWRPEGHNLAVACANTIVIYYDKAG------------------------------QVILELNPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             eEecCCCceehhhhhhHHHhhhhhc------------------------------ceecccCCchhHhhhhhccccchhh
Confidence            4556665688888888888888543                              1111112345666788888887544


Q ss_pred             -EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCC
Q 005913          438 -SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN  516 (670)
Q Consensus       438 -s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~  516 (670)
                       .+-..+.+.+||+.+......-.+.+..-.-+.|++.+..++.+...|.+.+++..+...+-.+-.|...+.+++|.+.
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE  170 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE  170 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence             4556789999999865332221222222223789998888999989999999998776555555458899999999887


Q ss_pred             CCEEEE
Q 005913          517 CNYIAT  522 (670)
Q Consensus       517 ~~~l~t  522 (670)
                      +..+..
T Consensus       171 d~vil~  176 (615)
T KOG2247|consen  171 DYVILC  176 (615)
T ss_pred             ceeeec
Confidence            654443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.67  E-value=6.2  Score=45.22  Aligned_cols=142  Identities=10%  Similarity=0.119  Sum_probs=90.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeE------Eee----------------CCCccEeEEEEec--CCCEEEEEECCCcEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLV------CYK----------------GHNYPVWDVQFNP--QGHYFASSSHDRTAR  488 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~------~~~----------------~h~~~V~~l~~sp--~g~~l~s~s~dg~v~  488 (670)
                      .++++++. .+.|.||+...-....      .+.                .....|.-+....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56666665 5789999876432211      110                0112244444433  456788999999999


Q ss_pred             EEECCC-------C-------------ceeEEecccCCCeeEEEEc--CCCCEEEEEEcCCcEEEEECCCC--cEE-EEE
Q 005913          489 IWSMDR-------I-------------QPLRIMAGHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVSSG--ECV-RIF  543 (670)
Q Consensus       489 lwd~~~-------~-------------~~~~~~~~~~~~v~~v~~~--p~~~~l~tgs~dg~I~iwd~~~~--~~~-~~~  543 (670)
                      +|.+++       .             +|...+. -...+..+++|  ...++||+++....|.+|-....  +.. ..-
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            997631       0             1222222 23468889998  88899999998888888755431  111 111


Q ss_pred             ecCCCCeEEEEEcCCC-----C-EEEEEECCCeEEEEeC
Q 005913          544 IGHRSMILSLAMSPDG-----R-YMASGDEDGTIMMWDL  576 (670)
Q Consensus       544 ~~h~~~I~~l~~sp~g-----~-~l~sg~~dg~I~iwDl  576 (670)
                      ..|...|.+|+|-++.     . ++++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1355678999997743     2 7888999999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.29  E-value=18  Score=37.09  Aligned_cols=170  Identities=16%  Similarity=0.166  Sum_probs=0.0

Q ss_pred             cEEEEECCCCceeEEec------ccCCCeeEEEEcCCCC------EEEEEEcCCcEEEEECCCCcEEEEEe---------
Q 005913          486 TARIWSMDRIQPLRIMA------GHLSDVDCVRWHINCN------YIATGSSDKTVRLWDVSSGECVRIFI---------  544 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~------~~~~~v~~v~~~p~~~------~l~tgs~dg~I~iwd~~~~~~~~~~~---------  544 (670)
                      .|.+||+.+.+.++.+.      ...+.+..+.+.....      ..++=+..+-|.++|+.+++.-+...         
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc


Q ss_pred             ----------cCCCCeEEEEEcC---CCCEEEEEECCCeEEEEeCCC--------------CeeeEEeeCCCcceEEEEE
Q 005913          545 ----------GHRSMILSLAMSP---DGRYMASGDEDGTIMMWDLAS--------------GRCVTPLMGHTSCVWTLAY  597 (670)
Q Consensus       545 ----------~h~~~I~~l~~sp---~g~~l~sg~~dg~I~iwDl~~--------------~~~~~~~~~h~~~V~sl~~  597 (670)
                                .....+..++.+|   +|++|+-+...+ -++|.+.+              ...+..+-...+....+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec--CCcEEEEee
Q 005913          598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR--RNLLFAAGA  665 (670)
Q Consensus       598 s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~--~~~~La~gs  665 (670)
                      +++|.++++--..+.|..|+..........         ..+..-+..-..+.++++.+  +|.+.+...
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~---------~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENF---------EILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTTSB-GCCE---------EEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             CCCCcEEEecCCCCeEEEEeCCCCcCccch---------heeEEcCceeeccceeeeccccCceEEEEEC

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.07  E-value=22  Score=37.23  Aligned_cols=156  Identities=20%  Similarity=0.274  Sum_probs=91.7

Q ss_pred             ccEeEEEEecCCCEEEEEECCCc------EEEEECCC----CceeE-----Eeccc--------CCCeeEEEEcCCCCEE
Q 005913          464 YPVWDVQFNPQGHYFASSSHDRT------ARIWSMDR----IQPLR-----IMAGH--------LSDVDCVRWHINCNYI  520 (670)
Q Consensus       464 ~~V~~l~~sp~g~~l~s~s~dg~------v~lwd~~~----~~~~~-----~~~~~--------~~~v~~v~~~p~~~~l  520 (670)
                      +.+..+.+.+++..+++.+.+|.      +..+++..    ...+.     .+...        .-+..++++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            34667888865556666666666      55555432    11111     11111        1155688887788887


Q ss_pred             EEEEcC------CcEEEEECCCCcEEEEEe---------------cCCCCeEEEEEcCCCCEEEEEEC-----CC-----
Q 005913          521 ATGSSD------KTVRLWDVSSGECVRIFI---------------GHRSMILSLAMSPDGRYMASGDE-----DG-----  569 (670)
Q Consensus       521 ~tgs~d------g~I~iwd~~~~~~~~~~~---------------~h~~~I~~l~~sp~g~~l~sg~~-----dg-----  569 (670)
                      ++.-.+      ..|+.++.. |+....+.               ..+...-+++++|+|+.|+++..     |+     
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            776666      788888876 66544431               12345789999999997766542     22     


Q ss_pred             ------eEEEEeCCC-CeeeEE----eeC-----CCcceEEEEEcCCCCEEEEEEC-----CCcEEEEeCCC
Q 005913          570 ------TIMMWDLAS-GRCVTP----LMG-----HTSCVWTLAYSCEGSLLASGSA-----DCTVKLWDVTT  620 (670)
Q Consensus       570 ------~I~iwDl~~-~~~~~~----~~~-----h~~~V~sl~~s~~g~~l~sgs~-----Dg~I~iwd~~~  620 (670)
                            .|..||..+ +.....    +..     ....|+.+.+-+++++|+.=-.     ...++|+.+..
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence                  244455554 322222    222     3467888999999987765332     44566666553

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.92  E-value=26  Score=37.79  Aligned_cols=148  Identities=13%  Similarity=0.099  Sum_probs=84.0

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce----
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----  497 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~----  497 (670)
                      +....+..++++.+++.+..-..++-||--...-...-......+..+.|.+++..++++ .+|.+ +|..+.+..    
T Consensus       239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~  316 (398)
T PLN00033        239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF  316 (398)
T ss_pred             cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence            345566777888877776543333334432111111222234568899999998877665 55554 444444432    


Q ss_pred             -eEEecc--cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE---ecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          498 -LRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       498 -~~~~~~--~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~---~~h~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                       ......  ....+..+.|.+++..+++| ..|.+.... ..|+.-...   ..-...++.+.|.++++.+++| .+|.|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i  393 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL  393 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence             222221  12358889998887766665 567666653 344432222   2224568899998876665555 57777


Q ss_pred             EEE
Q 005913          572 MMW  574 (670)
Q Consensus       572 ~iw  574 (670)
                      .-|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            655

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.91  E-value=24  Score=39.21  Aligned_cols=149  Identities=16%  Similarity=0.058  Sum_probs=78.8

Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC---CeeEEEEcCCCCEEEEEEc-------------CCcEEEE
Q 005913          469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHINCNYIATGSS-------------DKTVRLW  532 (670)
Q Consensus       469 l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~---~v~~v~~~p~~~~l~tgs~-------------dg~I~iw  532 (670)
                      +...++|.+++..+  +.++.+|+. |+.+........   .-..+..-|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            66678888776555  788888885 445544432221   1346677799999998872             1246667


Q ss_pred             ECCCCcEEEEEec--CC-------------------------CCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913          533 DVSSGECVRIFIG--HR-------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP  584 (670)
Q Consensus       533 d~~~~~~~~~~~~--h~-------------------------~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~~~~  584 (670)
                      | .+|+.+..+..  |-                         -.+.++.+.+ ++.+|+++-.-..|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            7 78877765431  10                         1378899988 566666666666899999888887776


Q ss_pred             eeCCCcceE-----EEEE---------------c-CCCCEEEEEECCC---cEEEEeCCCC
Q 005913          585 LMGHTSCVW-----TLAY---------------S-CEGSLLASGSADC---TVKLWDVTTS  621 (670)
Q Consensus       585 ~~~h~~~V~-----sl~~---------------s-~~g~~l~sgs~Dg---~I~iwd~~~~  621 (670)
                      +-.|.+.-.     -+.+               . +-|++-+.--.+|   .|.++|=...
T Consensus       309 lg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~  369 (477)
T PF05935_consen  309 LGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNG  369 (477)
T ss_dssp             ES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TT
T ss_pred             eCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCC
Confidence            655432110     0111               0 1245566666777   8888886543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.82  E-value=27  Score=37.81  Aligned_cols=147  Identities=12%  Similarity=0.129  Sum_probs=86.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC-----CCCEE
Q 005913          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-----LGDFI  436 (670)
Q Consensus       362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~L  436 (670)
                      +...+++|+..|.++||+-......                        .........-..+|..+..-+     +...|
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~------------------------~~~lllE~~l~~PILqv~~G~F~s~~~~~~L   91 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQ------------------------PEDLLLETQLKDPILQVECGKFVSGSEDLQL   91 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCC------------------------CccEEEEEecCCcEEEEEeccccCCCCcceE
Confidence            4578999999999999996431110                        011122222345666665432     11233


Q ss_pred             EEEeCCCeEEEEeCCCC--c-------eeEEeeCC--CccEeEEEEecC-----CCEEEEEECCCcEEEEECCCCceeEE
Q 005913          437 LSSSADTTIRLWSTKLN--A-------NLVCYKGH--NYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~--~-------~~~~~~~h--~~~V~~l~~sp~-----g~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      |+ =.-..+.+|.+...  .       .+.....|  ......+++-|-     ..++++-+.||.+.+++-+...-.+.
T Consensus        92 aV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~  170 (418)
T PF14727_consen   92 AV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF  170 (418)
T ss_pred             EE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE
Confidence            33 33455666665211  1       11222223  223444555442     35788889999999999877544444


Q ss_pred             ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC
Q 005913          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV  534 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~  534 (670)
                      +.+ .--...+.|.+....|++++++..+..|..
T Consensus       171 lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  171 LPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             cCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            443 344556788888899999999988888865

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.59  E-value=0.037  Score=58.56  Aligned_cols=141  Identities=17%  Similarity=0.225  Sum_probs=98.5

Q ss_pred             eEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE-EEcCCcEEEEECCCCcEEEEEec
Q 005913          467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIFIG  545 (670)
Q Consensus       467 ~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~~~~~~~  545 (670)
                      -...|-|.+..++.++.+-.+..||-... ..... ...+....++|..++..++. +-..+.+.+||+.+......-.+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            35678888888999999888888885432 22111 23345566788877765544 55678999999976543222222


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC
Q 005913          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD  610 (670)
Q Consensus       546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D  610 (670)
                      ....-.-+.|++-+..++.|...|.+.|+...+.+.+..+-.|...+++++|.+.+. .+.++.|
T Consensus       116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd  179 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD  179 (615)
T ss_pred             CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcH
Confidence            222222378999999999999999999999998887766656999999999999875 3444434

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.46  E-value=1.1  Score=31.25  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCC---CEEEEEECCCeEEEEeCCCC
Q 005913          548 SMILSLAMSPDG---RYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       548 ~~I~~l~~sp~g---~~l~sg~~dg~I~iwDl~~~  579 (670)
                      +.|.++.|||..   .+|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   48888888999999999853

It contains a characteristic DLL sequence motif.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.41  E-value=25  Score=36.69  Aligned_cols=135  Identities=7%  Similarity=0.080  Sum_probs=64.4

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCce---eEEecccCCCe--eEEEEcCCCCEEEEEEc-----CCcEEEEECCCCc
Q 005913          474 QGHYFASSSHD-----RTARIWSMDRIQP---LRIMAGHLSDV--DCVRWHINCNYIATGSS-----DKTVRLWDVSSGE  538 (670)
Q Consensus       474 ~g~~l~s~s~d-----g~v~lwd~~~~~~---~~~~~~~~~~v--~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~~~  538 (670)
                      ++..++.|+.+     ..+..+|+.+...   ...+..-....  .+++. -+++..+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            55667777754     3566677765442   11111111111  12222 25566666664     2368889988765


Q ss_pred             EEEEEe-cCCCCeEEEEEcCCCCEEEEEECCC----eEEEEeCCCCee--eEEeeCCCcc-----eEEEEEcCCCCEEEE
Q 005913          539 CVRIFI-GHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRC--VTPLMGHTSC-----VWTLAYSCEGSLLAS  606 (670)
Q Consensus       539 ~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg----~I~iwDl~~~~~--~~~~~~h~~~-----V~sl~~s~~g~~l~s  606 (670)
                      -...-. .........+...++++.+.|+.++    .+.+||..+.+-  +..+.....+     ..++. ..++.+++.
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~iyv~  229 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-INESLLLCI  229 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-ECCCEEEEE
Confidence            432211 1111122222334577777777654    356888876542  2221100011     11122 235678888


Q ss_pred             EECC
Q 005913          607 GSAD  610 (670)
Q Consensus       607 gs~D  610 (670)
                      |+.+
T Consensus       230 GG~~  233 (323)
T TIGR03548       230 GGFN  233 (323)
T ss_pred             CCcC
Confidence            8876

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.00  E-value=22  Score=37.93  Aligned_cols=147  Identities=15%  Similarity=0.058  Sum_probs=81.0

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeccc--CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEE
Q 005913          477 YFASSSHDRTARIWSMDRIQPLRIMAGH--LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSL  553 (670)
Q Consensus       477 ~l~s~s~dg~v~lwd~~~~~~~~~~~~~--~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l  553 (670)
                      .++++..+|.+.-.|.+++..+.....-  ...+.+-.+..+|+ +++++.++.++.+|.++|+.+..+.... ..+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            3444467777777777777655433221  12222223333565 7888889999999999999998887665 111111


Q ss_pred             EEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC---cceEEEEEcCCCCEEEEEEC--CCcEEEEeCCCCccccc
Q 005913          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT---SCVWTLAYSCEGSLLASGSA--DCTVKLWDVTTSTKVLK  626 (670)
Q Consensus       554 ~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~---~~V~sl~~s~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~  626 (670)
                      ..-.++ .+..++.+|.+...|..+|...-......   ..+.+-....++ .++.+..  ++.+.-.|...+.....
T Consensus       149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence            222233 34444478999999988888765543221   111111111233 3444444  55555566655554433

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.93  E-value=12  Score=40.68  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          590 SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       590 ~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      ..|.++...+..+.|++.+.+|.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            34889999998899999999999999999863

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.69  E-value=25  Score=35.64  Aligned_cols=194  Identities=13%  Similarity=0.075  Sum_probs=114.2

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCC--ccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      .+-+..+.++  +++...+..+.-++|.|+.+.........-+  +-..+  |.-.|++..++..|.-+.+.|+.+.+..
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCc
Confidence            4556677777  5677777777789999998776544332211  22223  3345888888887777888898765422


Q ss_pred             ---EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          499 ---RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       499 ---~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                         .........-..++.  .|++-..+..|+-+.+.|+.+......+.  .....+.++..+++--+++..+  --+.+
T Consensus       162 ~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvli  237 (370)
T COG5276         162 QLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLI  237 (370)
T ss_pred             eeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEE
Confidence               233333333345554  57788888899999999998654332221  1223678888887755555443  34666


Q ss_pred             EeCCCCeeeEEee--CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          574 WDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       574 wDl~~~~~~~~~~--~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      -|....+....+-  ....++.--.+.-.+++......+.-+-+-|+.+..
T Consensus       238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence            7766554333222  111221111233345666666666666677776544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.44  E-value=2  Score=42.17  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=50.3

Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEE-------e-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIF-------I-------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~-------~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      +..+++++++.+.+|.+++||+.+++++..-       .       .....|..+.++.+|.-+++-+ +|..+.||..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4567899999999999999999998765322       1       2446688888998888777665 57888888654


Q ss_pred             C
Q 005913          579 G  579 (670)
Q Consensus       579 ~  579 (670)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.18  E-value=26  Score=35.16  Aligned_cols=196  Identities=10%  Similarity=0.081  Sum_probs=122.9

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-  500 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~-  500 (670)
                      ..-+.++-.|||..-.++...|.|--.|..+++....--+....-..|...|||..-++-+.. .|.-.|-++....+. 
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~  140 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence            345667888889888888888888888888887766555555566678888888766654443 455555544432221 


Q ss_pred             e--cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          501 M--AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       501 ~--~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                      +  ..-........|.+.|+.-+++... .---.|.. ...+.+|... ...-+.|+..|+|..-++.-.+..|-..|..
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~  218 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF  218 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence            1  1223457788999999999988632 11111111 1223333322 2345678899999988887778888888877


Q ss_pred             CCeeeEE--eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          578 SGRCVTP--LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       578 ~~~~~~~--~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ++.....  -......-..+.-+|.|..-+|....+.+..+|-..
T Consensus       219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             cCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence            7632211  112122334455577888888877777777777544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.91  E-value=8.3  Score=41.12  Aligned_cols=121  Identities=11%  Similarity=0.132  Sum_probs=78.9

Q ss_pred             cCCcEEEEECCCC---cEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee----EEeeCCCcceEEEEE
Q 005913          525 SDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV----TPLMGHTSCVWTLAY  597 (670)
Q Consensus       525 ~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~----~~~~~h~~~V~sl~~  597 (670)
                      ..|.+.-|-+...   -++..-....++|.++.||+|.+.||.--.+..|.+++....+..    .+.+..+..|....|
T Consensus        41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W  120 (657)
T KOG2377|consen   41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW  120 (657)
T ss_pred             ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence            3444555554322   123333345679999999999999999999999999997433322    222333456889999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913          598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  661 (670)
Q Consensus       598 s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L  661 (670)
                      +.+ .-+|..+..| +-+|-+....              ..++...++.-.|.-..|+++-.++
T Consensus       121 ~~s-~e~A~i~~~G-~e~y~v~pek--------------rslRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  121 TSS-TEIAFITDQG-IEFYQVLPEK--------------RSLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             ecC-eeEEEEecCC-eEEEEEchhh--------------hhhhhhhhcccCccEEEEccccceE
Confidence            865 5566665444 6677765532              2345556777788888888876543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.84  E-value=36  Score=36.28  Aligned_cols=187  Identities=19%  Similarity=0.223  Sum_probs=109.2

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEE----ecCCCE--EEEEEC-C---CcEEEEECCCC-ceeE
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF----NPQGHY--FASSSH-D---RTARIWSMDRI-QPLR  499 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~----sp~g~~--l~s~s~-d---g~v~lwd~~~~-~~~~  499 (670)
                      |...+++....++-+.+||+. ++.+..+..  +.+..+..    .-.|..  |+.++. +   .+|++|.++.. ..+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            345678888888999999998 555555542  22332222    113443  444442 2   46999987531 2333


Q ss_pred             Eecc-------cCCCeeEEEE--cC-CCC-EEEEEEcCCcEEEEECC---CC----cEEEEEecCCCCeEEEEEcCCCCE
Q 005913          500 IMAG-------HLSDVDCVRW--HI-NCN-YIATGSSDKTVRLWDVS---SG----ECVRIFIGHRSMILSLAMSPDGRY  561 (670)
Q Consensus       500 ~~~~-------~~~~v~~v~~--~p-~~~-~l~tgs~dg~I~iwd~~---~~----~~~~~~~~h~~~I~~l~~sp~g~~  561 (670)
                      .+..       ....+..+++  +| +|. +.++...+|.+..|-+.   .+    +.+|.|.. .+.+-.|.......+
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR  221 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence            3321       1234555655  33 344 66678889988888764   33    45788865 357888999998889


Q ss_pred             EEEEECCCeEEEEeCCC-----CeeeEEeeC--CCcceEEEEEc--CCC-C-EEEEEECCCcEEEEeCCCC
Q 005913          562 MASGDEDGTIMMWDLAS-----GRCVTPLMG--HTSCVWTLAYS--CEG-S-LLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       562 l~sg~~dg~I~iwDl~~-----~~~~~~~~~--h~~~V~sl~~s--~~g-~-~l~sgs~Dg~I~iwd~~~~  621 (670)
                      |+.|-++--|+-|+...     +..+....+  ....|-.|+.-  .++ . +|+|.-.+++..||+....
T Consensus       222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99999998888888762     233333322  33567777763  333 2 4455556789999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.77  E-value=36  Score=36.26  Aligned_cols=190  Identities=11%  Similarity=-0.006  Sum_probs=100.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEeeCCC--ccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCC-CeeEE
Q 005913          435 FILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCV  511 (670)
Q Consensus       435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~-~v~~v  511 (670)
                      .+..++.+|.|.-.|..++..+-....-.  ..+.+-.+..+|+ ++.++.++.++.+|.++++.+........ .+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            44445677777777777776543222211  1122222222565 78888889999999988988887775541 11111


Q ss_pred             EEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC---CeEEEEEcCCCCEEEEEEC--CCeEEEEeCCCCeeeEEee
Q 005913          512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDE--DGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~I~~l~~sp~g~~l~sg~~--dg~I~iwDl~~~~~~~~~~  586 (670)
                      ..-.+ ..+..++.++.+...|..+|...........   .+..--.. ....++.+..  ++.+.-.|..+|...-...
T Consensus       149 ~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         149 PVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             cEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence            11122 2344444789999999888888766543221   11111111 2234444444  6677777887877665532


Q ss_pred             CCC----cceEEEEEcC-----CCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          587 GHT----SCVWTLAYSC-----EGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       587 ~h~----~~V~sl~~s~-----~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      .+.    ..+.......     .+.-++.++.+|.+...+..+++.....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~  276 (370)
T COG1520         227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF  276 (370)
T ss_pred             eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence            111    1110000000     1112355556666666676666655444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.65  E-value=2.8  Score=41.16  Aligned_cols=66  Identities=15%  Similarity=0.333  Sum_probs=50.7

Q ss_pred             EcCCCCEEEEEECCCeEEEEeCCCCeeeEEe-------e-------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPL-------M-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       555 ~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~-------~-------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      +..++.+|++.+.+|.+++||+.+++.+..-       .       .....|.++.++.+|.-|++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456889999999999999999988765332       1       2446788999998888777665 57889998765


Q ss_pred             C
Q 005913          621 S  621 (670)
Q Consensus       621 ~  621 (670)
                      .
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.21  E-value=5.4  Score=43.23  Aligned_cols=29  Identities=10%  Similarity=-0.174  Sum_probs=22.6

Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECC
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVS  535 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~  535 (670)
                      .|..+..++.|..++..+.+|.+.++=.+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~  133 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPK  133 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchh
Confidence            36677788999999999999987776433

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.96  E-value=36  Score=35.69  Aligned_cols=150  Identities=14%  Similarity=0.131  Sum_probs=88.0

Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCc------EEEEECCC--C--cEEE-----EEecCCC--------CeEEEEEcCCCCE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKT------VRLWDVSS--G--ECVR-----IFIGHRS--------MILSLAMSPDGRY  561 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~------I~iwd~~~--~--~~~~-----~~~~h~~--------~I~~l~~sp~g~~  561 (670)
                      .+.+..+.+.+++..+++.+.+|.      +..+++..  +  ..+.     .+....+        ..-+|++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            456778888876666777777777      66655543  1  1111     1111111        2347888788888


Q ss_pred             EEEEECC------CeEEEEeCCCCeeeEEee---------------CCCcceEEEEEcCCCCEEEEEECC-----C--c-
Q 005913          562 MASGDED------GTIMMWDLASGRCVTPLM---------------GHTSCVWTLAYSCEGSLLASGSAD-----C--T-  612 (670)
Q Consensus       562 l~sg~~d------g~I~iwDl~~~~~~~~~~---------------~h~~~V~sl~~s~~g~~l~sgs~D-----g--~-  612 (670)
                      +++.-.+      ..|+.+|.. |+.+..+.               ..+...-+|+++|+|+.|+++...     +  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8887667      789999976 66544431               123567889999999976665432     2  1 


Q ss_pred             ------EEEEeCCCCccccccccccCCcccccccccCC-----CCCCeEEEEEecCCcEEEE
Q 005913          613 ------VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-----KSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       613 ------I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~V~~l~fs~~~~~La~  663 (670)
                            ++|+.........        ......+.+..     ....|..+.+-+++.+|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~--------~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGE--------PVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCc--------cceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  5565554332100        00011222221     4567888899999887763

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.94  E-value=4.5  Score=48.55  Aligned_cols=137  Identities=15%  Similarity=0.226  Sum_probs=87.6

Q ss_pred             CCCcEEEEECCCCceeEEecccCCCeeEEEE--------cCCCCEEEEEEcCCcEEEEECC----CCcEE-----EEEec
Q 005913          483 HDRTARIWSMDRIQPLRIMAGHLSDVDCVRW--------HINCNYIATGSSDKTVRLWDVS----SGECV-----RIFIG  545 (670)
Q Consensus       483 ~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~--------~p~~~~l~tgs~dg~I~iwd~~----~~~~~-----~~~~~  545 (670)
                      .|..+.+|+.+++.....+.+-...|..|..        -|.=+++++-+.--.|.++-+.    ++..-     ..+..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            5788999999987777777766666655543        2333455554445556665442    22111     11122


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC----CC---e-e----------------eEEee-CCCcceEEEEEcCC
Q 005913          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLA----SG---R-C----------------VTPLM-GHTSCVWTLAYSCE  600 (670)
Q Consensus       546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~----~~---~-~----------------~~~~~-~h~~~V~sl~~s~~  600 (670)
                      ....|.|+....+|+.+++|-+ |  .+|.+.    .|   + +                +-.+. .+..+|..++....
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~d-g--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRD-G--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecC-C--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            3456889998888888777654 4  455431    11   1 1                11223 45679999999988


Q ss_pred             CCEEEEEECCCcEEEEeCCCCc
Q 005913          601 GSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       601 g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      -+++.+-+..|+|.+|++....
T Consensus       254 R~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             cceeeeeccCceEEEEEccCCC
Confidence            8899999999999999998743

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.86  E-value=9.1  Score=41.55  Aligned_cols=29  Identities=17%  Similarity=0.137  Sum_probs=23.4

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWS  449 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd  449 (670)
                      .-.|+.+..++.|..++..+.+|.+..+=
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence            35688899999999999999999665543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.63  E-value=1.6  Score=30.39  Aligned_cols=31  Identities=16%  Similarity=0.302  Sum_probs=26.3

Q ss_pred             CCEEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 005913          352 NGLNCASISQDG---SLVAGGFSDSSLKVWDMAK  382 (670)
Q Consensus       352 ~~V~~l~fs~d~---~~La~g~~dg~I~Iwdl~~  382 (670)
                      +.|.|+.|||+.   .+||..-.-|.|.|+|+..
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   5999998899999999873

It contains a characteristic DLL sequence motif.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.39  E-value=5.7  Score=47.75  Aligned_cols=136  Identities=17%  Similarity=0.307  Sum_probs=88.9

Q ss_pred             eCCCeEEEEeCCCCceeEEeeCCCccEeEEEE--------ecCCCEEEEEECCCcEEEEECCCCc---ee------EEec
Q 005913          440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--------NPQGHYFASSSHDRTARIWSMDRIQ---PL------RIMA  502 (670)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~--------sp~g~~l~s~s~dg~v~lwd~~~~~---~~------~~~~  502 (670)
                      +.|..+.+|+.+++.....+.+-...|..|..        -|.=+++++.+.--.|.++-+.-..   ..      ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            45788999999998888888877766766653        3333455555444556666432110   11      1222


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC----CCC---c-E----------------EEEEe-cCCCCeEEEEEcC
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV----SSG---E-C----------------VRIFI-GHRSMILSLAMSP  557 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~----~~~---~-~----------------~~~~~-~h~~~I~~l~~sp  557 (670)
                      .....|.|+....+|+.+++|- ||.  +|.+    ..|   + |                +..+. .+..+|..++...
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            3356789999888888777764 554  4433    111   1 1                11122 4567999999998


Q ss_pred             CCCEEEEEECCCeEEEEeCCC
Q 005913          558 DGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       558 ~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      ....+.+-+..|.|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            889999999999999999976

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.22  E-value=51  Score=36.17  Aligned_cols=106  Identities=10%  Similarity=0.160  Sum_probs=60.8

Q ss_pred             CccEeEEEEecCCCEEEEEECCCcEEEEECCCCce--eEEe----c-ccCCCeeEEEEcCCC------CEEEEEE-----
Q 005913          463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP--LRIM----A-GHLSDVDCVRWHINC------NYIATGS-----  524 (670)
Q Consensus       463 ~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~--~~~~----~-~~~~~v~~v~~~p~~------~~l~tgs-----  524 (670)
                      -...|.++|.|+|..|++--..|.|++++..++..  +..+    . ........|++||+-      .+|.+..     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            34578999999998776665469999998655432  1111    1 134668899999874      3444432     


Q ss_pred             -----cCCcEEEEECCCC-----cEEEEEecC----CCCeEEEEEcCCCCEEEEEECC
Q 005913          525 -----SDKTVRLWDVSSG-----ECVRIFIGH----RSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       525 -----~dg~I~iwd~~~~-----~~~~~~~~h----~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                           ....|.-|.+...     .....+...    ...-..|+|.|||.++++.++.
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 1223444544311     111222211    1123578899999877665544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=87.07  E-value=64  Score=37.18  Aligned_cols=66  Identities=9%  Similarity=0.004  Sum_probs=38.5

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      |-+.++.+.|.-++--++..-.|.+       ..+. ......-...|...+||.|.+.++....+++|.+++-
T Consensus        75 hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k  141 (1243)
T COG5290          75 HFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK  141 (1243)
T ss_pred             hhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence            5555666666555443443333332       1111 1112223456778899999988888888888888763

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.59  E-value=30  Score=33.37  Aligned_cols=185  Identities=14%  Similarity=0.086  Sum_probs=96.7

Q ss_pred             CCCEEEEEEC--CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE-EEcCCcEEEEECCCCcEEEEEecCCCCe
Q 005913          474 QGHYFASSSH--DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIFIGHRSMI  550 (670)
Q Consensus       474 ~g~~l~s~s~--dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t-gs~dg~I~iwd~~~~~~~~~~~~h~~~I  550 (670)
                      +|+++.+.+.  ...|++||+++++.+..-.-....+..=-...-+.++.. .-.+|.-..+|..+-+++..+. ..+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            5667777664  347999999998877654422112211111112333332 3468888899999888877664 23333


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee----CCC-cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccc
Q 005913          551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM----GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (670)
Q Consensus       551 ~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~----~h~-~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~  625 (670)
                      ..++  .|+.-|+.++....++.-|..+-..+.++.    +.. ..+.-+.|- +|.+.|-.=.+..|...+..++....
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            4444  345556666666677777765543332221    111 122233332 45444444444444444554444322


Q ss_pred             ccccccCCcccccccccCCCCCCeEEEEEecCC-cEEEEee
Q 005913          626 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGA  665 (670)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~gs  665 (670)
                      -.+...-   +..+..-..+..-.+.+++.|++ +++++|-
T Consensus       211 widlS~L---~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         211 WIDLSGL---LKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EEEccCC---chhcCccccccccccceeecCcCCeEEEecC
Confidence            2211100   01122223345567889999986 7777764

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.43  E-value=30  Score=39.54  Aligned_cols=178  Identities=13%  Similarity=0.040  Sum_probs=88.9

Q ss_pred             CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE---EecccCCCeeEEEEcCCCC
Q 005913          442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR---IMAGHLSDVDCVRWHINCN  518 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~---~~~~~~~~v~~v~~~p~~~  518 (670)
                      --.|+|++.. |..+....-...++-.+.|+.+. -+++...+|++++|++-......   .+......|..+.+..+|-
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence            3458888876 44444333233367789999665 56777899999999985422211   0122233454444444664


Q ss_pred             EEEEEEcCCcEEEEECCCCcEEEEEec-CCC--CeEEEEEcCCCC---EEEEEE-CCC-eEEEEeCCCCeeeEEeeCCCc
Q 005913          519 YIATGSSDKTVRLWDVSSGECVRIFIG-HRS--MILSLAMSPDGR---YMASGD-EDG-TIMMWDLASGRCVTPLMGHTS  590 (670)
Q Consensus       519 ~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~--~I~~l~~sp~g~---~l~sg~-~dg-~I~iwDl~~~~~~~~~~~h~~  590 (670)
                      .+++  .+|.+.+-.-......+.+.. ...  +-.|-...++++   .++-.. ..| .+..-+....+. ..+....+
T Consensus       141 avlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-~~~~~~~~  217 (829)
T KOG2280|consen  141 AVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-HALSWPNS  217 (829)
T ss_pred             EEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc-cccCCCCc
Confidence            4444  455555443222212222221 111  112222222211   111111 000 011111111111 11222235


Q ss_pred             ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       591 ~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      .+..++.||+.++|+-=..+|.|.+-+++..+..
T Consensus       218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL  251 (829)
T ss_pred             eEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence            6778999999999999999999998887765543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=85.63  E-value=51  Score=34.67  Aligned_cols=53  Identities=9%  Similarity=0.079  Sum_probs=25.7

Q ss_pred             CCCEEEEEeCC-----------CeEEEEeCCCCceeEEeeCCCccEeEE-EE-ecCCCEEEEEECC
Q 005913          432 LGDFILSSSAD-----------TTIRLWSTKLNANLVCYKGHNYPVWDV-QF-NPQGHYFASSSHD  484 (670)
Q Consensus       432 ~~~~L~s~s~D-----------g~I~lwd~~~~~~~~~~~~h~~~V~~l-~~-sp~g~~l~s~s~d  484 (670)
                      ++.+.+.|+.+           ..+..||..+..-...-.......... .. .-+++..+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            45666666542           247778877654332211111111111 11 2467778888754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.38  E-value=66  Score=35.73  Aligned_cols=117  Identities=14%  Similarity=0.093  Sum_probs=62.8

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc---EeEEEEecCCCEEEEEEC-------------CCcEEEE
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---VWDVQFNPQGHYFASSSH-------------DRTARIW  490 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---V~~l~~sp~g~~l~s~s~-------------dg~v~lw  490 (670)
                      +...++|.+++..+  ..++.+|+. |+.+..+.-....   -.++..-|+|++|+.+..             ...|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            56678888776555  678888886 5555555433221   356778899999888771             1234445


Q ss_pred             ECCCCceeEEec--ccC-------------------------CCeeEEEEcCCCCEEEEEEcC-CcEEEEECCCCcEEEE
Q 005913          491 SMDRIQPLRIMA--GHL-------------------------SDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRI  542 (670)
Q Consensus       491 d~~~~~~~~~~~--~~~-------------------------~~v~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~  542 (670)
                      | .+++.+..+.  .|.                         -.++++.+.+....|++.++. ..|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            5 5555444321  111                         237889999855555555554 4899999889988887


Q ss_pred             EecCC
Q 005913          543 FIGHR  547 (670)
Q Consensus       543 ~~~h~  547 (670)
                      +-.+.
T Consensus       309 lg~~~  313 (477)
T PF05935_consen  309 LGPPG  313 (477)
T ss_dssp             ES-ST
T ss_pred             eCCCC
Confidence            76553

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.57  E-value=49  Score=34.47  Aligned_cols=106  Identities=5%  Similarity=0.116  Sum_probs=51.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCcee---EEeeCCCccE--eEEEEecCCCEEEEEECC-----CcEEEEECCCCc
Q 005913          432 LGDFILSSSAD-----TTIRLWSTKLNANL---VCYKGHNYPV--WDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ  496 (670)
Q Consensus       432 ~~~~L~s~s~D-----g~I~lwd~~~~~~~---~~~~~h~~~V--~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~  496 (670)
                      ++.+++.|+.+     ..+..+|+.+....   .....-..+.  .+++. -++..++.|+..     ..+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            35555666653     35666777655431   1111111111  11222 256667777642     357778877654


Q ss_pred             eeEE--ecccCCCeeEEEEcCCCCEEEEEEcCC----cEEEEECCCCcE
Q 005913          497 PLRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC  539 (670)
Q Consensus       497 ~~~~--~~~~~~~v~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~  539 (670)
                      -...  +... ......+...+++..+.|+.++    .+.+||..+.+-
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            3221  1111 1112222234567777777654    356888887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=84.06  E-value=99  Score=36.68  Aligned_cols=157  Identities=13%  Similarity=0.153  Sum_probs=93.2

Q ss_pred             CCCccEeEEEEe---c----CCCEEEEEECCCcEEEEECC------C---------CceeEEec---ccCCCeeEEEEcC
Q 005913          461 GHNYPVWDVQFN---P----QGHYFASSSHDRTARIWSMD------R---------IQPLRIMA---GHLSDVDCVRWHI  515 (670)
Q Consensus       461 ~h~~~V~~l~~s---p----~g~~l~s~s~dg~v~lwd~~------~---------~~~~~~~~---~~~~~v~~v~~~p  515 (670)
                      ....||..|+|.   .    ...+|++- ....+.|+...      .         ..++..+.   ....+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788888887   2    22355544 34556666611      1         12333333   1234677899998


Q ss_pred             C-CCEEEEEEcCCcEEEEECCCC-----cEEEEEecCCCC----------eEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          516 N-CNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       516 ~-~~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~h~~~----------I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      . ...||+....|...|||+..+     ...+....+.+.          -..|.|.++...|+.++. ..+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence            4 468999999999999999211     111111122222          337888888777777754 56899999877


Q ss_pred             eeeEEe--eCCCcceEEEEEcCC--CCEEEEEECCCcEEEEeCCCC
Q 005913          580 RCVTPL--MGHTSCVWTLAYSCE--GSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       580 ~~~~~~--~~h~~~V~sl~~s~~--g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .....+  ......|..+.-++.  +..++..  ...|...++...
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence            653312  223467888887776  3333332  246777777763

These proteins are found in fungi.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=83.71  E-value=66  Score=34.39  Aligned_cols=41  Identities=10%  Similarity=0.075  Sum_probs=19.0

Q ss_pred             eEEEEeCCCCceeEEeeCCCccEe-EEEEe-cCCCEEEEEECC
Q 005913          444 TIRLWSTKLNANLVCYKGHNYPVW-DVQFN-PQGHYFASSSHD  484 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V~-~l~~s-p~g~~l~s~s~d  484 (670)
                      .+..||..+.+-...-.....+.. ..+.. -++..++.|+.+
T Consensus       107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131        107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            477788776543322111111111 11122 467777777754

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=83.57  E-value=3.9  Score=43.45  Aligned_cols=163  Identities=14%  Similarity=0.064  Sum_probs=101.1

Q ss_pred             eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEe-cccCC----Cee-EEEEcCCCCEEEEEEcCCcEEE
Q 005913          459 YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIM-AGHLS----DVD-CVRWHINCNYIATGSSDKTVRL  531 (670)
Q Consensus       459 ~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~-~~~-~~~~~----~v~-~v~~~p~~~~l~tgs~dg~I~i  531 (670)
                      +.....+|..+-..|+|+.+..-+. .++.++++.+.... +.+ ....+    .|+ .+..-..|..+++++.||.|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4445567888889999998877665 68888888654321 111 11111    122 1122235667888999999988


Q ss_pred             E-ECCCCc-----EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEE
Q 005913          532 W-DVSSGE-----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA  605 (670)
Q Consensus       532 w-d~~~~~-----~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~  605 (670)
                      | |++.+.     .++.+.-...++..+.-..+.+-+++-+..|++.++.-...+.+-.-. --..+.-+++||.+.+|+
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll  373 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLL  373 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchhe
Confidence            7 665432     233333333445444444455677888888999888765544432211 223556789999999888


Q ss_pred             EEECCCcEEEEeCCCCccc
Q 005913          606 SGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       606 sgs~Dg~I~iwd~~~~~~~  624 (670)
                      +-. .|.++++.+++..+.
T Consensus       374 ~e~-~gki~~~~l~Nr~Pe  391 (733)
T COG4590         374 SED-QGKIRLAQLENRNPE  391 (733)
T ss_pred             eec-CCceEEEEecCCCCC
Confidence            653 578999999887653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.12  E-value=27  Score=33.88  Aligned_cols=102  Identities=20%  Similarity=0.301  Sum_probs=61.9

Q ss_pred             CEEEEEEcCCcEEEEECCCC--cEEEEEecCCCCeEEEEEcCCCCEEEEEECC---C---eEEEE---eCC--CCeeeE-
Q 005913          518 NYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPDGRYMASGDED---G---TIMMW---DLA--SGRCVT-  583 (670)
Q Consensus       518 ~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g---~I~iw---Dl~--~~~~~~-  583 (670)
                      ..|+.+.....|.+|++.+.  +....|. .-+.|..+.++..|.||+|--.+   .   .+|+|   ...  ...++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            45555567788999999833  3445554 34889999999999999995322   2   55664   221  112221 


Q ss_pred             EeeCC---------------------CcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCc
Q 005913          584 PLMGH---------------------TSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       584 ~~~~h---------------------~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      ++-||                     ..++.+++..| .|+++ .|+ ++++.+|.+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEE
Confidence            22222                     23456667666 45544 444 5589999886643

>PRK13613 lipoprotein LpqB; Provisional

Probab=82.87  E-value=48  Score=37.84  Aligned_cols=146  Identities=13%  Similarity=0.113  Sum_probs=86.5

Q ss_pred             CeeEEEEcCCCCEEEEEEcCC-cEEEEECCCCcE----E-EEEecCCCCeEEEEEcCCCCEEEEEEC--CC--eEEEEeC
Q 005913          507 DVDCVRWHINCNYIATGSSDK-TVRLWDVSSGEC----V-RIFIGHRSMILSLAMSPDGRYMASGDE--DG--TIMMWDL  576 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~----~-~~~~~h~~~I~~l~~sp~g~~l~sg~~--dg--~I~iwDl  576 (670)
                      .+.+++.++++..++..+.++ .+++..+..+..    . ..+.  ...++.-.|.++| .+.+...  ++  .+++..-
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~  440 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG  440 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC
Confidence            678899999999988877665 566655433332    1 1222  2346777888887 5555522  22  2666653


Q ss_pred             CCCeeeEEee--CCCc-ceEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913          577 ASGRCVTPLM--GHTS-CVWTLAYSCEGSLLASGSA---DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  650 (670)
Q Consensus       577 ~~~~~~~~~~--~h~~-~V~sl~~s~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  650 (670)
                       +|.... +.  ...+ .|..+..|+||-.++.-..   .+.|.|=-+.....-        ...+.....+...-..+.
T Consensus       441 -~G~~~~-V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G--------~~~l~~~~~l~~~l~~v~  510 (599)
T PRK13613        441 -DGEPVE-VRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKA--------VVSVEEFRSLAPELEDVT  510 (599)
T ss_pred             -CCcEEE-eeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCC--------cEEeeccEEeccCCCccc
Confidence             454431 22  2333 7999999999987766543   356666555432211        111112223333344599


Q ss_pred             EEEEecCCcEEEEee
Q 005913          651 SLQFSRRNLLFAAGA  665 (670)
Q Consensus       651 ~l~fs~~~~~La~gs  665 (670)
                      +++|..+..+++.|.
T Consensus       511 ~~~W~~~~sL~Vlg~  525 (599)
T PRK13613        511 DMSWAGDSQLVVLGR  525 (599)
T ss_pred             eeEEcCCCEEEEEec
Confidence            999999999888664

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.86  E-value=18  Score=36.93  Aligned_cols=113  Identities=16%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE------cCCcEEEEECCCCcEEEEEec----CCCCeEEEE
Q 005913          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS------SDKTVRLWDVSSGECVRIFIG----HRSMILSLA  554 (670)
Q Consensus       485 g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs------~dg~I~iwd~~~~~~~~~~~~----h~~~I~~l~  554 (670)
                      ..|++||..+.+-...-.+-.+.|..+.|..+.+.++.|.      ....+..||..+..-...-.+    -.++|..+.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence            4699999988766655555667899999986666666654      355788899876654322221    236788887


Q ss_pred             EcC-CCC-EEEEEE---CCCeEEEEeCCCCeeeEE-eeCCCcceEEEEE
Q 005913          555 MSP-DGR-YMASGD---EDGTIMMWDLASGRCVTP-LMGHTSCVWTLAY  597 (670)
Q Consensus       555 ~sp-~g~-~l~sg~---~dg~I~iwDl~~~~~~~~-~~~h~~~V~sl~~  597 (670)
                      +.. |+. +.++|.   .+..|..||=.++..+.. .......|..+.+
T Consensus        96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             eeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            743 333 443433   344688888766665544 2233344555543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.53  E-value=48  Score=36.39  Aligned_cols=109  Identities=16%  Similarity=0.194  Sum_probs=65.1

Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE--E----EEe-cCCCCeEEEEEcCCC------CEEEEEE
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV--R----IFI-GHRSMILSLAMSPDG------RYMASGD  566 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~--~----~~~-~h~~~I~~l~~sp~g------~~l~sg~  566 (670)
                      .+.........|+|.|+++.|++--..|.|++++..++...  .    ... ...+....|+++|+-      ++|+...
T Consensus        24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy  103 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY  103 (454)
T ss_pred             EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence            34445677889999999987777655699999986654321  1    111 124568899999874      3444432


Q ss_pred             ----------CCCeEEEEeCCCC-------eee-EEee---CCCcceEEEEEcCCCCEEEEEECC
Q 005913          567 ----------EDGTIMMWDLASG-------RCV-TPLM---GHTSCVWTLAYSCEGSLLASGSAD  610 (670)
Q Consensus       567 ----------~dg~I~iwDl~~~-------~~~-~~~~---~h~~~V~sl~~s~~g~~l~sgs~D  610 (670)
                                ....|.-|.+...       +.+ ..+.   .|.  -..|.|.|||.++++.+..
T Consensus       104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence                      1234555554321       111 1111   233  3468899999877766654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=82.47  E-value=1.3e+02  Score=36.88  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=19.7

Q ss_pred             cccCCCCCCeEEEEEecCCcEEEEee
Q 005913          640 KTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       640 ~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      ..-..+-..+++++.+|+|.+.++-.
T Consensus       655 ~At~A~lnsp~alaVsPdg~v~IAD~  680 (1899)
T KOG4659|consen  655 AATQAKLNSPYALAVSPDGDVIIADS  680 (1899)
T ss_pred             hhhccccCCcceEEECCCCcEEEecC
Confidence            34455677899999999999877543

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=82.41  E-value=70  Score=34.82  Aligned_cols=31  Identities=32%  Similarity=0.669  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      ..|.+++..+..+.+++.+.+|.|.+||+..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4499999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=81.35  E-value=41  Score=38.64  Aligned_cols=227  Identities=14%  Similarity=0.118  Sum_probs=105.2

Q ss_pred             cceecCCCCCCceeEEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ccccc-cCC-C----CCCCCCC
Q 005913          330 NRVHLSSAALPSVSFYTF-INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG--QQAVS-SGL-Q----GENDTTP  400 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~-~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~--~~~~~-~~~-~----~~~~~~~  400 (670)
                      +.+.+-..+.|.-..+.. .+-.++|.+.+||-|.+.++.-..+..|.+++..-..  ..... ... .    -...+..
T Consensus        90 Dii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgk  169 (1243)
T COG5290          90 DIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGK  169 (1243)
T ss_pred             cEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecc
Confidence            444444444453333333 3457889999999999988888888888888743210  00000 000 0    0000000


Q ss_pred             CccccCCCCCccc-------eee----eecCccCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEeeCCCcc
Q 005913          401 REDIIGPNGRKRS-------YTL----YQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYP  465 (670)
Q Consensus       401 ~~~~~~~~~~~~~-------~~~----~~~h~~~V~~l~~sp~~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~  465 (670)
                      .+..+...+....       ...    +..-...=.-++|--|..+.+.+...    ..+++|.-. |..-......++.
T Consensus       170 ketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~  248 (1243)
T COG5290         170 KETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGM  248 (1243)
T ss_pred             cchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccc
Confidence            0000000000000       000    00001111235565555665555432    234555422 1111111111222


Q ss_pred             EeEEEEecCCCEEEEEECCC-----cEEEEECC---CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC
Q 005913          466 VWDVQFNPQGHYFASSSHDR-----TARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG  537 (670)
Q Consensus       466 V~~l~~sp~g~~l~s~s~dg-----~v~lwd~~---~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~  537 (670)
                      -..+.|-|.|..+++-+.||     .|.++.-+   .|..-. -.+....+..++|+-....++.+ ....|.+|-..+-
T Consensus       249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l-r~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy  326 (1243)
T COG5290         249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL-RVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY  326 (1243)
T ss_pred             hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc-cCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence            23488999999999987665     34444422   222211 11233445667777666555554 4567999976554


Q ss_pred             cEEEEEecCCCCeEEEEEcCCC
Q 005913          538 ECVRIFIGHRSMILSLAMSPDG  559 (670)
Q Consensus       538 ~~~~~~~~h~~~I~~l~~sp~g  559 (670)
                      ..--...-.-..+.-+.|+|..
T Consensus       327 hWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         327 HWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EEEEEEeecCCCcceeeecccc
Confidence            3322222233446677888843

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.11  E-value=9.3  Score=43.28  Aligned_cols=72  Identities=15%  Similarity=0.187  Sum_probs=44.1

Q ss_pred             cCCCEEEEEECCCcEEEEECCC----CceeEE-----------ec-----------ccCCCeeEEEEcC----CCCEEEE
Q 005913          473 PQGHYFASSSHDRTARIWSMDR----IQPLRI-----------MA-----------GHLSDVDCVRWHI----NCNYIAT  522 (670)
Q Consensus       473 p~g~~l~s~s~dg~v~lwd~~~----~~~~~~-----------~~-----------~~~~~v~~v~~~p----~~~~l~t  522 (670)
                      ++...++.+..||.+.......    +.....           +.           ...+.+..+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566777777888777776543    111110           00           0123455566666    7789999


Q ss_pred             EEcCCcEEEEECCCCcEEEEEe
Q 005913          523 GSSDKTVRLWDVSSGECVRIFI  544 (670)
Q Consensus       523 gs~dg~I~iwd~~~~~~~~~~~  544 (670)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=81.08  E-value=1.3e+02  Score=36.03  Aligned_cols=173  Identities=12%  Similarity=0.108  Sum_probs=96.6

Q ss_pred             eEEEEeCCCCceeEEeeCC----CccEeEEEEecCCC--EEEEEE-----------CCCcEEEEEC-CCCceeEEecccC
Q 005913          444 TIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGH--YFASSS-----------HDRTARIWSM-DRIQPLRIMAGHL  505 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~g~--~l~s~s-----------~dg~v~lwd~-~~~~~~~~~~~~~  505 (670)
                      .|++.|..++..+..+.-.    ...+..+.|+....  ++++|+           .+|.++.|++ +.++.+..+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            3677777766655444321    23456666766333  333332           2345666664 3344333332211


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-Ceee
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCV  582 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~  582 (670)
                      -+-.-.+.+|...++++| ....+++||+...+.++....  -...|+.+++.  +..++.|...-.+.++-.+. ++.+
T Consensus       934 ~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred             CCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence            122234566877777766 567899999988877665432  23457777765  66788887666666554432 3334


Q ss_pred             EEeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          583 TPLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       583 ~~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ..+-...  ..|+.+.+- |...++.+..=|.+.+-.+..
T Consensus      1011 ~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             EEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence            4443222  345555543 445677776667777766644

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.03  E-value=10  Score=35.69  Aligned_cols=32  Identities=28%  Similarity=0.306  Sum_probs=26.8

Q ss_pred             cceEEEEEcCCC------CEEEEEECCCcEEEEeCCCC
Q 005913          590 SCVWTLAYSCEG------SLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       590 ~~V~sl~~s~~g------~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      ..|.+++|||-|      -+|++.+.+|.|.||.-...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            478999999954      48999999999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.52  E-value=8.2  Score=36.31  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCC------CEEEEEECCCeEEEEeCCC
Q 005913          548 SMILSLAMSPDG------RYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       548 ~~I~~l~~sp~g------~~l~sg~~dg~I~iwDl~~  578 (670)
                      ..+.+++|||.|      -+|++.+.+|.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999943      3788889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.18  E-value=13  Score=39.04  Aligned_cols=121  Identities=18%  Similarity=0.269  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhcccccccccccCChhhHHHHHHHHHHHHhcc
Q 005913            3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSS   81 (670)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~   81 (670)
                      .+.+|.|+..++-+.|-.+.-..|.+|+.....  .....   .+- .+...+.+..+.+.         .-.-+|+.+.
T Consensus       116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~--~~~~~---~~F~el~~Iv~~lke~Dl---------~~aLeWa~~~  181 (394)
T KOG2817|consen  116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSED--ESKSR---TEFVELNQIVEALKERDL---------EPALEWAESN  181 (394)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCc--chhhh---hhHHHHHHHHHHHHhccc---------hhHHHHHHHh
Confidence            455799999999999999999999999987542  00000   000 00011111111111         2235788887


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhhHHhhhHHHHHHHhc
Q 005913           82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQ--EARTFFNNFREDHEMMHLRDLQKLEG  137 (670)
Q Consensus        82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~--~a~~f~~~~~~~~~~~~~~~~~~l~~  137 (670)
                      -+..+.+=+.|=|=++-+-|++++..|..+  +|-.+-.++-.-|...|..||+.+..
T Consensus       182 ~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~  239 (394)
T KOG2817|consen  182 RQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG  239 (394)
T ss_pred             hhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            777777667788888999999999999988  88888887777777778888888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	670
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-36
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-30
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-28
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-28
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-28
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-27
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-20
2h9l_A	329	Wdr5delta23 Length = 329		2e-27
2h9l_A	329	Wdr5delta23 Length = 329		2e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-27
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-27
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-27
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-27
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-27
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-27
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-27
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-27
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-27
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-27
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-20
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-27
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-26
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-20
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-26
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-23
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-21
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-16
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-22
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-21
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-13
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-20
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-07
2j4b_A	138	Crystal Structure Of Encephalitozoon Cuniculi Taf5		2e-20
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-20
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-20
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-19
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-19
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-19
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-19
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-19
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-18
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-18
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-18
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-15
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-18
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-18
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-18
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		6e-18
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		7e-18
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		7e-18
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-17
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-17
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-17
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-17
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-17
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-17
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-17
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-17
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-12
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-17
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-12
2j49_A	148	Crystal Structure Of Yeast Taf5 N-Terminal Domain L		1e-16
2nxp_A	156	Structure Of Ntd2 Domain Of The Human Taf5 Subunit		3e-15
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-15
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-14
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-14
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-14
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-14
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-14
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-14
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-10
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-13
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-13
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-12
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-12
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-09
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		7e-12
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-11
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-10
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-10
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-10
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		7e-10
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		5e-09
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		8e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-08
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-08
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-08
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		3e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-06
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-06
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		2e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		4e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-04
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		5e-04
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		6e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  148 bits (374), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 142/252 (56%), Gaps = 22/252 (8%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHY 477
           GHS  V+  +FSP G  I S+S D T++LW+   N  L+    GH+  VW V F+P G  
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQT 194
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
            AS+S D+T ++W+ +  Q L+ + GH S V  V +  +   IA+ S DKTV+LW+  +G
Sbjct: 195 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 252
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           + ++   GH S +  +A  PDG+ +AS  +D T+ +W+  +G+ +  L GH+S VW +A+
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 311
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657
           S +G  +AS S D TVKLW+            ++G    + L+TL   S+ V+ + FS  
Sbjct: 312 SPDGQTIASASDDKTVKLWN------------RNG----QHLQTLTGHSSSVWGVAFSPD 355
Query: 658 NLLFAAGALSKT 669
               A+ +  KT
Sbjct: 356 GQTIASASDDKT 367

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 32/246 (13%)
Query: 406 GPNGRKR-----------SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA 454
           GP G+KR            Y L  GH  PV    F P+   ++S+S D TI++W  +   
Sbjct: 83  GPLGQKRDPKEWIPRPPEKYAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 455 NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH 514
                KGH   V D+ F+  G   AS S D T ++W     + +R M GH  +V  V   
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574
            N ++I + S DKT+++W+V +G CV+ F GHR  +  +  + DG  +AS   D T+ +W
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 575 DLASGRCVTPLMGHTSCVWTLAYSCE--------------------GSLLASGSADCTVK 614
            +A+  C   L  H   V  ++++ E                    G  L SGS D T+K
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 615 LWDVTT 620
           +WDV+T
Sbjct: 322 MWDVST 327

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 4/238 (1%)
Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
           G  G + T  +   + PN   + +TL  GH+  V S  FSP G+++ SSSAD  I++W  
Sbjct: 1   GAMGSSATQSKPTPVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
                     GH   + DV ++   +   S+S D+T +IW +   + L+ + GH + V C
Sbjct: 59  YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
             ++   N I +GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG 
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             +WD ASG+C+  L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 235

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
                           + LKTLP  S PV ++ F+R   L  +
Sbjct: 145 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 172

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 30  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 89
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 90  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 253

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                           + LKTLP  S PV ++ F+R   L  + +
Sbjct: 163 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 192

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 28  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 87
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 88  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 251

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                           + LKTLP  S PV ++ F+R   L  + +
Sbjct: 161 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 4/238 (1%)
Query: 391 GLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
           G  G + T  +   + PN   + +TL  GH+  V S  FSP G+++ SSSAD  I++W  
Sbjct: 1   GPLGSSATQSKPTPVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
                     GH   + DV ++   +   S+S D+T +IW +   + L+ + GH + V C
Sbjct: 59  YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
             ++   N I +GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG 
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             +WD ASG+C+  L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 235

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                           + LKTLP  S PV ++ F+R   L  + +
Sbjct: 145 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 23  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 82
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 83  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 143 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 246

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 96  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                           + LKTLP  S PV ++ F+R   L  + +
Sbjct: 156 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 185

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 12  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 71
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 235

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                           + LKTLP  S PV ++ F+R   L  + +
Sbjct: 145 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 7   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 66
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 67  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 126
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 127 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 230

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 80  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                           + LKTLP  S PV ++ F+R   L  + +
Sbjct: 140 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 169

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 6   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 229

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                           + LKTLP  S PV ++ F+R   L  + +
Sbjct: 139 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 6   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 65
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 229

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                           + LKTLP  S PV ++ F+R   L  + +
Sbjct: 139 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 2   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 61
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 62  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 122 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 225

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 75  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                           + LKTLP  S PV ++ F+R   L  + +
Sbjct: 135 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSS 164

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 11  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 70
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 71  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 131 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 191 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 234

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 84  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
                           + LKTLP  S PV ++ F+R   L  +
Sbjct: 144 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 171

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           + + PN   + +TL  GH+  V S  FSP G+++ SSSAD  I++W            GH
Sbjct: 10  EFVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
              + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 583 TPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
                           + LKTLP  S PV ++ F+R   L  +
Sbjct: 142 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           + + PN   + +TL  GH+  V S  FSP G+++ SSSAD  I++W            GH
Sbjct: 10  EFVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
              + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 583 TPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
                           + LKTLP  S PV ++ F+R   L  +
Sbjct: 142 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 5/227 (2%)
Query: 405 IGPNGRKRSYTL---YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG 461
           +G    K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            G
Sbjct: 3   LGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 62
Query: 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA 521
           H   + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I 
Sbjct: 63  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581
           +GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 582 VTPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
           +  L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 183 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 78  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
                           + LKTLP  S PV ++ F+R   L  +
Sbjct: 138 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 165

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTLY---QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 9   PTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                             LKTLP  S PV ++ F+R   L  + +
Sbjct: 142 G---------------MCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  118 bits (296), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           + + PN   + +TL  GH+  V S  FSP G+++ +SSAD  I++W            GH
Sbjct: 10  EFVKPNYALK-FTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
              + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           GS D++VR+WDV +G+C++    H   + ++  + DG  + S   DG   +WD ASG+C+
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 583 TPLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
             L+   +  V  + +S  G  + + + D T+KLWD +   K LKT
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKT 232

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A  S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA 663
                           + LKTLP  S PV ++ F+R   L  +
Sbjct: 142 G---------------KCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 5/225 (2%)
Query: 407 PNGRKRSYTLY---QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN 463
           P   K +Y L     GH+  V S  FSP G+++ SSSAD  I++W            GH 
Sbjct: 9   PTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
             + DV ++   +   S+S D+T +IW +   + L+ + GH + V C  ++   N I +G
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
           S D++VR+WDV +G C++    H   + ++  + DG  + S   DG   +WD ASG+C+ 
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 584 PLMGHTS-CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
            L+   +  V  + +S  G  + + + D  +KLWD +   K LKT
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKT 232

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560
           +AGH   V  V++  N  ++A+ S+DK +++W    G+  +   GH+  I  +A S D  
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + S  +D T+ +WD++SG+C+  L GH++ V+   ++ + +L+ SGS D +V++WDV T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 621 STKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
                             LKTLP  S PV ++ F+R   L  + +
Sbjct: 142 G---------------MCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 37/323 (11%)
Query: 363 GSLVAGGFSDSSLKVWDMAKLGQ--QAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420
           G+ +  G  D++LKVW  A  G+  + +     G   +  R++II      R+  ++   
Sbjct: 129 GNRIVSGSDDNTLKVWS-AVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187
Query: 421 SGPVYSASFSPLGDF---------ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF 471
           +G      +               ++S S D T+R+W  +    L    GH   V  VQ+
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
           +  G    S ++D   ++W  +    L  + GH + V  ++   +  ++ +GS D ++R+
Sbjct: 248 D--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRV 303
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---H 588
           WDV +G C+    GH+S  L+  M      + SG+ D T+ +WD+ +G+C+  L G   H
Sbjct: 304 WDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 648
            S V  L ++   + + + S D TVKLWD       LKT E      +R+L TL +  + 
Sbjct: 362 QSAVTCLQFN--KNFVITSSDDGTVKLWD-------LKTGE-----FIRNLVTLESGGSG 407
Query: 649 --VYSLQFSRRNLLFAAGALSKT 669
             V+ ++ S   L+ A G+ + T
Sbjct: 408 GVVWRIRASNTKLVCAVGSRNGT 430

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 63/310 (20%)
Query: 333 HLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL 392
           +L++++ PS   Y        +     S DG  +A G  D  +++WD+            
Sbjct: 113 NLNTSSSPSSDLY--------IRSVCFSPDGKFLATGAEDRLIRIWDI------------ 152
Query: 393 QGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452
             EN              ++   + QGH   +YS  + P GD ++S S D T+R+W  + 
Sbjct: 153 --EN--------------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 453 NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWS------MDRIQPLRIMA-GH 504
               +     +  V  V  +P  G Y A+ S DR  R+W       ++R+        GH
Sbjct: 197 GQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255
Query: 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDV------------SSGECVRIFIGHRSMILS 552
              V  V +  +   + +GS D++V+LW++            +SG C   +IGH+  +LS
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315
Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL------LAS 606
           +A + +  Y+ SG +D  ++ WD  SG  +  L GH + V ++A +   SL       A+
Sbjct: 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375
Query: 607 GSADCTVKLW 616
           GS DC  ++W
Sbjct: 376 GSGDCKARIW 385

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 93/158 (58%), Gaps = 9/158 (5%)
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
           V F+P G + A+ + DR  RIW ++  + + I+ GH  D+  + +  + + + +GS D+T
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 529 VRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPL-- 585
           VR+WD+ +G+C  + +     + ++A+SP DG+Y+A+G  D  + +WD  +G  V  L  
Sbjct: 189 VRIWDLRTGQC-SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 586 -----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
                 GH   V+++ ++ +G  + SGS D +VKLW++
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
           ++ATG+ D+ +R+WD+ + + V I  GH   I SL   P G  + SG  D T+ +WDL +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV--LKTEEKSGTNRL 636
           G+C   L              +G  +A+GS D  V++WD  T   V  L +E +SGT   
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256
Query: 637 RSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
            S          VYS+ F+R      +G+L ++
Sbjct: 257 DS----------VYSVVFTRDGQSVVSGSLDRS 279

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 49/308 (15%)
Query: 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409
           T  G+ C  +  D   +  G  D+++K+WD   L  + + +G                  
Sbjct: 132 TSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG------------------ 171
Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
                     H+G V    +      I++ S+D+T+R+W       L     H   V  +
Sbjct: 172 ----------HTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219
Query: 470 QFNPQGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
           +FN       + S DR+  +W M     I   R++ GH + V+ V    +  YI + S D
Sbjct: 220 RFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGD 275
Query: 527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586
           +T+++W+ S+ E VR   GH+  I  L      R + SG  D TI +WD+  G C+  L 
Sbjct: 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 333
Query: 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646
           GH   V  + +  +   + SG+ D  +K+WD+  +   L     +GT     L+TL   S
Sbjct: 334 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA---LDPRAPAGT---LCLRTLVEHS 385
Query: 647 TPVYSLQF 654
             V+ LQF
Sbjct: 386 GRVFRLQF 393

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 119/246 (48%), Gaps = 11/246 (4%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GHS  V     S  G F LS S D  +RLW      +   + GH   V  V F+      
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG---HLSDVDCVRWHINC--NYIATGSSDKTVRLWD 533
            S+S DRT ++W+        I  G   H   V CVR+  N     I + S DKTV++W+
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
           +S+ +      GH   + ++A+SPDG   ASG +DG +++WDLA G+ +  L  + S + 
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIH 606
Query: 594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKV--LKTEEKSGTNRLRSLKTLPTKSTPVY- 650
            L +S     L + + +  +K+WD+ + + V  LK + K+   +  +     TK   +Y 
Sbjct: 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665
Query: 651 -SLQFS 655
            SL +S
Sbjct: 666 TSLNWS 671

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 516 NCNYIATGSSDKTVRLW-----DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570
           N + I + S DK++ LW     D + G   R   GH   +  + +S DG++  SG  DG 
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 630
           + +WDLA+G      +GHT  V ++A+S +   + S S D T+KLW+     K   +E  
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 631 SG 632
            G
Sbjct: 514 EG 515

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 10/199 (5%)
Query: 428 SFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHD 484
           +++P G  + S   D  IR+W T+ ++ +   V  +GH   V  V ++P G+Y AS+S D
Sbjct: 23  AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 485 RTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---EC 539
            T  IW  + D  + +  + GH ++V  V W  + N +AT S DK+V +W+V      EC
Sbjct: 83  ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTLAY 597
           V +   H   +  +   P    +AS   D T+ ++  +     C   L GH S VW+LA+
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 598 SCEGSLLASGSADCTVKLW 616
              G  LAS S D TV++W
Sbjct: 203 DPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 513 WHINCNYIATGSSDKTVRLWDV--SSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDG 569
           W+     +A+   D+ +R+W     S  C  +   GH+  +  +A SP G Y+AS   D 
Sbjct: 24  WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 570 TIMMW--DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           T  +W  +     CVT L GH + V ++A++  G+LLA+ S D +V +W+V
Sbjct: 84  TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134

>pdb|2J4B|A Chain A, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N- Terminal Domain Length = 138

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Query: 68  QDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMM 127
           +  Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH   
Sbjct: 9   ETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YN 67
Query: 128 HLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIIN 187
              ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+N
Sbjct: 68  KSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILN 127
Query: 188 ERINFQVSPG 197
           + ++ +V  G
Sbjct: 128 QHLDIKVYVG 137

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 101/241 (41%), Gaps = 27/241 (11%)
Query: 401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK 460
           R + +G    K   TL +GH   V    +      I+SSS D  + +W +         K
Sbjct: 45  RVEALGQFVMKTRRTL-KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-----FTTNK 98
Query: 461 GHNYP-----VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515
            H        V    + P G   A    D    ++ +   +   + A   S    V  H 
Sbjct: 99  EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS----VAMHT 154
Query: 516 N----CNY------IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD--GRYMA 563
           N    C++      I T S D T  LWDV SG+ ++ F GH + +L L ++P   G    
Sbjct: 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214
Query: 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
           SG  D   M+WD+ SG+CV     H S V ++ Y   G   ASGS D T +L+D+    +
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
Query: 624 V 624
           V
Sbjct: 275 V 275

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GH S + TL  S +G+L+AS   D  + LW++
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
           +GH S + TL  S +G+L+AS   D  + LW++                  +++ TL  +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 237
Query: 646 STPVYSLQFSRRNLLFAAG 664
              V+SL FS      AA 
Sbjct: 238 D-EVFSLAFSPNRYWLAAA 255

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
           +GH S + TL  S +G+L+AS   D  + LW++                  +++ TL  +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 237
Query: 646 STPVYSLQFSRRNLLFAAG 664
              V+SL FS      AA 
Sbjct: 238 D-EVFSLAFSPNRYWLAAA 255

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
           +GH S + TL  S +G+L+AS   D  + LW++                  +++ TL  +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 237
Query: 646 STPVYSLQFSRRNLLFAAG 664
              V+SL FS      AA 
Sbjct: 238 D-EVFSLAFSPNRYWLAAA 255

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 14  EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
           +GH S + TL  S +G+L+AS   D  + LW++                  +++ TL  +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 237
Query: 646 STPVYSLQFSRRNLLFAAG 664
              V+SL FS      AA 
Sbjct: 238 D-EVFSLAFSPNRYWLAAA 255

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 418 QGHSGPVYS-ASFSPLGDFILSSSADTTIRLW-----STKLNANLVCYKGHNYPVWDVQF 471
           +GH+G V S A+ +   + +LS+S D T+  W       K    +  +KGH++ V D   
Sbjct: 8   EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 67
Query: 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
              G Y  S+S D+T R+W +   +  +   GH SDV  V      + I +GS DKT+++
Sbjct: 68  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 532 WDVSSGECVRIFIGHRSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPL 585
           W +  G+C+   +GH   +  + + P      D   + S   D  +  W+L   +     
Sbjct: 128 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
           +GH S + TL  S +G+L+AS   D  + LW++                  +++ TL  +
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ 231
Query: 646 STPVYSLQFSRRNLLFAAG 664
              V+SL FS      AA 
Sbjct: 232 D-EVFSLAFSPNRYWLAAA 249

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 30/224 (13%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGH 476
           GH G V++  ++  G  ++S S D T+R+W  K       ++GHN  V   D+       
Sbjct: 160 GHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 477 YFASSSHDRTARIWSM-----------DRIQPLR------------IMAGHLSDVDCVRW 513
           Y  + S D T  +W +           +   PL             ++ GH++ V  V  
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
           H   N + +GS D T+ +WDV+  +C+ I  GH   I S     + +   S   D TI +
Sbjct: 279 H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           WDL +G  +  L GHT+ V  L  S     L S +AD +++ WD
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD 378

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604
           GH + +++     D  Y+ +G +D  I ++D  + + +  L GH   VW L Y+  G +L
Sbjct: 119 GHMTSVITCLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGIL 176
Query: 605 ASGSADCTVKLWDV 618
            SGS D TV++WD+
Sbjct: 177 VSGSTDRTVRVWDI 190

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 406 GPNGRKRS----YTL----YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV 457
           GPN  + S    Y L     +GHS  V   + S  G+F +S+S D ++RLW+ +      
Sbjct: 44  GPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY 103
Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWH- 514
            + GH   V  V F+P      S   D   R+W++ + + +  ++   H   V CVR+  
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSP 162
Query: 515 -INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
            ++   I +G  D  V++WD+++G  V    GH + + S+ +SPDG   AS D+DG   +
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 574 WDLASGRCVTPL 585
           WDL  G  ++ +
Sbjct: 223 WDLTKGEALSEM 234

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
           +GH+  V DV  +  G++  S+S D + R+W++   Q      GH  DV  V +  +   
Sbjct: 64  EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 520 IATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSP--DGRYMASGDEDGTIMMWD 575
           I +G  D  +R+W+V  GEC+       H   +  +  SP  D   + SG  D  + +WD
Sbjct: 124 IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
           LA+GR VT L GHT+ V ++  S +GSL AS   D   +LWD+T
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 9/155 (5%)
Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
           P R + GH + V  V    N N+  + S D ++RLW++ +G+C   F+GH   +LS+A S
Sbjct: 59  PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLM--GHT---SCVWTLAYSCEGSLLASGSADC 611
           PD R + SG  D  + +W++  G C+  L    HT   SCV   + S +  ++ SG  D 
Sbjct: 119 PDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCV-RFSPSLDAPVIVSGGWDN 176
Query: 612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646
            VK+WD+ T    L T+ K  TN + S+   P  S
Sbjct: 177 LVKVWDLATGR--LVTDLKGHTNYVTSVTVSPDGS 209

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 28/210 (13%)
Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
           +++++ + D  IR++ +     L+   GH+  VW +++   G    S S DRT R+W + 
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 494 RIQPLRIMAGHLSDVDC--VRWHINCNYIATGSSDKTVRLWDV-------SSGE------ 538
           +     +  GH S V C  +  + N  YI TGS D T+ +W +         GE      
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 539 ----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588
                      V +  GH + + +  +S  G  + SG  D T+++WD+A  +C+  L GH
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           T  +++  Y  E     S S D T+++WD+
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDL 339

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604
           GH + +++     D  Y+ +G +D  I ++D  + + +  L GH   VW L Y+  G +L
Sbjct: 119 GHXTSVITCLQFEDN-YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGIL 176
Query: 605 ASGSADCTVKLWDV 618
            SGS D TV++WD+
Sbjct: 177 VSGSTDRTVRVWDI 190

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      +LS+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      +LS+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      ++S+S D  + +W +     +      
Sbjct: 48  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 107
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 166
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 273

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      ++S+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 405 IGPNGR--KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
           I P GR   R+    +GH   +Y+  +      ++S+S D  + +W +     +      
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMD----RIQPLRIMAGHLSDVDCVRWHINCN 518
           +  V    + P G+Y A    D    I+++      ++  R +AGH   + C R+ ++ N
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I T S D T  LWD+ +G+    F GH   ++SL+++PD R   SG  D +  +WD+  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           G C     GH S +  + +   G+  A+GS D T +L+D+    +++
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 128/322 (39%), Gaps = 32/322 (9%)
Query: 346  TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
            T     N +N    S D  L+A   +D +L++WD+    + ++++      +   P ED 
Sbjct: 745  TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 404  ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
                            I+    +   +          ++ GH   +    FSP     + 
Sbjct: 805  EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 439  SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498
            + +   + LW+      +   +GH   V  V F+P G  F ++S D+T R+W   ++   
Sbjct: 865  ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 499  RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
              +     ++D V        +A  +    +R   + +G+  +I     + +    +SP 
Sbjct: 925  SAIVLK-QEIDVVFQENETMVLAVDN----IRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 979
Query: 559  GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
              Y+A GDEDG I + +L + R  +  +GH   V  + ++ +G  L S S D  +++W+ 
Sbjct: 980  LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1039
Query: 619  TTSTKVLKTEEKSGTNRLRSLK 640
             T   V     +      R L+
Sbjct: 1040 QTGDYVFLQAHQETVKDFRLLQ 1061

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Query: 407  PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
            PN R  S  +  GH   V    F+  G  ++SSS D+ I++W+ +   + V  + H   V
Sbjct: 998  PNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ-TGDYVFLQAHQETV 1054
Query: 467  WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
             D +   Q     S S D T ++W++   +  R    H   V       +    ++ S+D
Sbjct: 1055 KDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1113
Query: 527  KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV---T 583
            KT ++W       +    GH   +   A S DG  +A+GD++G I +W+++ G+ +    
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1173
Query: 584  PL------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 637
            P+        H   V  + +S +   L S      +K W+V T     +T   +GTN L+
Sbjct: 1174 PISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGDSS-QTFYTNGTN-LK 1229
Query: 638  SLKTLPTKSTPV 649
             +   P   T V
Sbjct: 1230 KIHVSPDFRTYV 1241

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605
           H   +     S DG+ +AS   D T+ ++   +G  +  +  H   V   A+S + S +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKS 631
           + SAD  VK+WD  T   V   +E S
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHS 706

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 128/322 (39%), Gaps = 32/322 (9%)
Query: 346  TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ-QAVSSGLQGENDTTPRED- 403
            T     N +N    S D  L+A   +D +L++WD+    + ++++      +   P ED 
Sbjct: 738  TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 404  ----------------IIGPNGRKRSY---------TLYQGHSGPVYSASFSPLGDFILS 438
                            I+    +   +          ++ GH   +    FSP     + 
Sbjct: 798  EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 439  SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498
            + +   + LW+      +   +GH   V  V F+P G  F ++S D+T R+W   ++   
Sbjct: 858  ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 499  RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558
              +     ++D V        +A  +    +R   + +G+  +I     + +    +SP 
Sbjct: 918  SAIVLK-QEIDVVFQENETMVLAVDN----IRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972
Query: 559  GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
              Y+A GDEDG I + +L + R  +  +GH   V  + ++ +G  L S S D  +++W+ 
Sbjct: 973  LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Query: 619  TTSTKVLKTEEKSGTNRLRSLK 640
             T   V     +      R L+
Sbjct: 1033 QTGDYVFLQAHQETVKDFRLLQ 1054

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Query: 407  PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
            PN R  S  +  GH   V    F+  G  ++SSS D+ I++W+ +   + V  + H   V
Sbjct: 991  PNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ-TGDYVFLQAHQETV 1047
Query: 467  WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD 526
             D +   Q     S S D T ++W++   +  R    H   V       +    ++ S+D
Sbjct: 1048 KDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106
Query: 527  KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV---T 583
            KT ++W       +    GH   +   A S DG  +A+GD++G I +W+++ G+ +    
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1166
Query: 584  PL------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR 637
            P+        H   V  + +S +   L S      +K W+V T     +T   +GTN L+
Sbjct: 1167 PISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGDSS-QTFYTNGTN-LK 1222
Query: 638  SLKTLPTKSTPV 649
             +   P   T V
Sbjct: 1223 KIHVSPDFRTYV 1234

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605
           H   +     S DG+ +AS   D T+ ++   +G  +  +  H   V   A+S + S +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKS 631
           + SAD  VK+WD  T   V   +E S
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHS 699

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 109/224 (48%), Gaps = 27/224 (12%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           QGHSG VYS  ++P  ++I+S+S D  + +W+   +      K H   V +  F P G  
Sbjct: 63  QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS 122
Query: 478 FASSSHDRTARIWSM------DRIQPL-RIMAGHLSDVDCVRWHINCNYIA-------TG 523
            A    D    I+++      D   P+ R++ GH        +  +C Y+        TG
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG------YASSCQYVPDQETRLITG 176
Query: 524 SSDKTVRLWDVSSGECVRIF-----IGHRSMILSLAM-SPDGRYMASGDEDGTIMMWDL- 576
           S D+T  LWDV++G+ + IF      GH + +LSL++ S +     SG  D T+ +WDL 
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
Query: 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
            + R V    GH   + ++ +  +G    +GS D T +L+D+ T
Sbjct: 237 ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           S +  RTA  ++   +   R + GH   V  + W    N+I + S D  + +W+  + + 
Sbjct: 41  SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHT 589
                 H   ++  A +P+G+ +A G  D    +++L+S           R +T   G+ 
Sbjct: 101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA 160
Query: 590 SCVWTLAYSC-----EGSLLASGSADCTVKLWDVTTSTKV 624
           S       SC     + + L +GS D T  LWDVTT  ++
Sbjct: 161 S-------SCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 418 QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY-------KGHNYPVWDV 469
           +GH+G V   + +P   D ILS+S D TI +W  KL  +   Y       +GH++ V DV
Sbjct: 35  KGHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +  G +  S S D T R+W +      R   GH  DV  V +  +   I +GS DKT+
Sbjct: 93  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 530 RLWDVSSGECVRIFI--GHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPL 585
           +LW+ + G C        H   +  +  SP+     + S   D  + +W+LA+ +  T  
Sbjct: 153 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GHT  + T+  S +GSL ASG  D    LWD+
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
           + I + S DKT+ +W ++  E       R   GH   +  + +S DG++  SG  DGT+ 
Sbjct: 52  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+     K    +++S 
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESH 170
Query: 633 TNRLRSLKTLPTKSTPV 649
           +  +  ++  P  S P+
Sbjct: 171 SEWVSCVRFSPNSSNPI 187

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 418 QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY-------KGHNYPVWDV 469
           +GH+G V   + +P   D ILS+S D TI +W  KL  +   Y       +GH++ V DV
Sbjct: 12  KGHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +  G +  S S D T R+W +      R   GH  DV  V +  +   I +GS DKT+
Sbjct: 70  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 530 RLWDVSSGECVRIFI--GHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPL 585
           +LW+ + G C        H   +  +  SP+     + S   D  + +W+LA+ +  T  
Sbjct: 130 KLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           +GHT  + T+  S +GSL ASG  D    LWD+
Sbjct: 189 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 518 NYIATGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
           + I + S DKT+ +W ++  E       R   GH   +  + +S DG++  SG  DGT+ 
Sbjct: 29  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           +WDL +G      +GHT  V ++A+S +   + SGS D T+KLW+     K    +++S 
Sbjct: 89  LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESH 147
Query: 633 TNRLRSLKTLPTKSTPV 649
           +  +  ++  P  S P+
Sbjct: 148 SEWVSCVRFSPNSSNPI 164

>pdb|2J49|A Chain A, Crystal Structure Of Yeast Taf5 N-Terminal Domain Length = 148

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 62  DGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFR 121
           + P  Y   YS L++W  SSL++YK EL +++YP+FI+ F++LVAK  +  AR FF+ F 
Sbjct: 5   NAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFS 63
Query: 122 EDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS-- 179
            D +  H  ++ +L  V S  H++E E A + +  K  I + + +  LLL +L++ +S  
Sbjct: 64  PDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIG 123
Query: 180 -TKMLGIINERIN 191
            + ++ +IN+ ++
Sbjct: 124 GSLIISVINQHLD 136

>pdb|2NXP|A Chain A, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of Tfiid Length = 156

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 42  IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCF 101
           + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +
Sbjct: 3   VAVEDQPDVSAVLSAYNQQGD-PTXYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHXY 61
Query: 102 MDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIK 161
           ++LV   H  EA++FF  F  D E  +  DL+ L  +    H +  E     R SK  ++
Sbjct: 62  LELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHXKGNETXLDFRTSKFVLR 121
Query: 162 ICQYSYELLLQYLHKTQSTKMLGIINERI 190
           I + SY+LL ++L + Q+ ++  I+ E +
Sbjct: 122 ISRDSYQLLKRHLQEKQNNQIWNIVQEHL 150

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
           PV +  F    ++I+  S D  IR+++      +V ++ H   +  +  +P   Y  S S
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVS-SGEC 539
            D T ++W+ +    L +   GH   V CV ++  + +  A+G  D+TV++W +  S   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  G    +  +     PD  YM +  +D TI +WD  +  CV  L GH S V    +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
                ++ SGS D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
           PV +  F    ++I+  S D  IR+++      +V ++ H   +  +  +P   Y  S S
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGEC 539
            D T ++W+ +    L +   GH   V CV ++  + +  A+G  D+TV++W +  S   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  G    +  +     PD  YM +  +D TI +WD  +  CV  L GH S V    +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
                ++ SGS D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRW-HI 515
           GH+  V  +++ P G + AS  +D    +W     +    PL+    H   V  V W   
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 516 NCNYIATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTI 571
             N +ATG  +SD+ +R+W+V SG C+     H S + S+  SP  + + SG       +
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 357
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           ++W   +   V  L GHTS V +L  S +G+ +AS +AD T++LW
Sbjct: 358 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRW-HI 515
           GH+  V  +++ P G + AS  +D    +W     +    PL+    H   V  V W   
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 516 NCNYIATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTI 571
             N +ATG  +SD+ +R+W+V SG C+     H S + S+  SP  + + SG       +
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 346
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           ++W   +   V  L GHTS V +L  S +G+ +AS +AD T++LW
Sbjct: 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
           PV +  F    ++I+  S D  IR+++      +V ++ H   +  +  +P   Y  S S
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGEC 539
            D T ++W+ +    L +   GH   V CV ++  + +  A+G  D+TV++W +  S   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  G    +  +     PD  YM +  +D TI +WD  +  CV  L GH S V    +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
                ++ SGS D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)
Query: 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482
           PV +  F    ++I+  S D  IR+++      +V ++ H   +  +  +P   Y  S S
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 483 HDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGEC 539
            D T ++W+ +    L +   GH   V CV ++  + +  A+G  D+TV++W +  S   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 540 VRIFIGHRSMI--LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
             +  G    +  +     PD  YM +  +D TI +WD  +  CV  L GH S V    +
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
                ++ SGS D T+K+W+ +T  KV KT    G  R   + T PT
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTY-KVEKT-LNVGLERSWCIATHPT 281

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           +GH   V S   S       SSS D  IRLW  +    +          W + F+P   Y
Sbjct: 77  EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537
            A+ +H     I+ ++  +    +      +  + +  +  Y+A+G+ D  + ++D+++G
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG 196
Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597
           + +    GH   I SL  SPD + + +  +DG I ++D+        L GH S V  +A+
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Query: 598 SCEGSLLASGSADCTVKLWDVTTSTKV 624
             + +   S S+D +VK+WDV T T V
Sbjct: 257 CPDDTHFVSSSSDKSVKVWDVGTRTCV 283

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 21/212 (9%)
Query: 460 KGHNYPVWDVQFNPQ----GHYFASSSHDRTARIWSM--DRIQPLRIMAGHLSDVDCVRW 513
           + H+  +W V +            + S D   ++W    +R+     + GH   V  V  
Sbjct: 29  QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
                  A+ S D  +RLWD+ +G+ ++          +LA SPD +Y+A+G   G + +
Sbjct: 89  SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 633
           + + SG+    L      + ++AYS +G  LASG+ D  + ++D+ T             
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG------------ 196
Query: 634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
              + L TL   + P+ SL FS  + L    +
Sbjct: 197 ---KLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 30/273 (10%)
Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVW 467
           +S  LY+     ++S  FS     + + S D  I+L S K +     +++    H   + 
Sbjct: 8   KSLKLYKE---KIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR 62
Query: 468 DVQFNPQGHYFASSSHDRTARIW----SMDR---IQPLRIMAGHLSDVDCVRWHINCNYI 520
            V + P     A+ S D T  IW    S DR   +  L I+ GH ++V  V W  +  Y+
Sbjct: 63  SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 521 ATGSSDKTVRLWDVS-SG---ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
           AT S DK+V +W+   SG   EC+ +   H   +  +   P    +AS   D T+ +W  
Sbjct: 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Query: 577 ASG--RCVTPLMGHTSCVWTLAYS-CEGSL-LASGSADCTVKLWDVTTSTKVLKTEEKSG 632
                 CV  L GH   VW+  +   EG   L SGS D TV++W      K +  +E   
Sbjct: 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW------KYMGDDEDDQ 236
Query: 633 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
              +            VY++ +    L+ + GA
Sbjct: 237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGA 269

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRW-HI 515
           GH+  V  +++ P G + AS  +D    +W     +    PL+    H   V  V W   
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 516 NCNYIATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTI 571
             N +ATG  +SD+ +R+W+V SG C+     H S + S+  SP  + + SG       +
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 266
Query: 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           ++W   +   V  L GHTS V +L  S +G+ +AS +AD T++LW
Sbjct: 267 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST-KLNANLVCYKGH 462
           +   +G    YTL  GH G V S SF      ++S S D T ++W    L  NL   + H
Sbjct: 88  LFATSGEDPLYTLI-GHQGNVCSLSFQD--GVVISGSWDKTAKVWKEGSLVYNL---QAH 141
Query: 463 NYPVWD---VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
           N  VWD   V F+   + F ++S D+T ++W  D++  ++  +G  +DV      ++  +
Sbjct: 142 NASVWDAKVVSFSE--NKFLTASADKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGH 197
Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579
             + S+D  ++L D  +G+ +R + GH S +  + + P+G  ++ G ED T+ +W   +G
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENG 256
Query: 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
                +      +W++     G ++  GS+D  V++
Sbjct: 257 SLKQVITLPAISIWSVDCXSNGDIIV-GSSDNLVRI 291

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GH+  V   + S    F +SSS D T+RLW  +       + GH   V+ V F+P     
Sbjct: 74  GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 479 ASSSHDRTARIWSMDRIQPLRIMAG----HLSDVDCVRW----------HINCNYIATGS 524
            S+  +R  ++W++  +   +  +     H   V CVR+               Y A+  
Sbjct: 134 LSAGAEREIKLWNI--LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
            D  +++W+ ++ +    F  H S +  L++SP+G+Y+A+G +D  +++WD+ +      
Sbjct: 192 WDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK----------VLKTEEKSGTN 634
                S +  +A++ +   +A G+ D  VK++++ T +K          + K E + G N
Sbjct: 251 EFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 520 IATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIM 572
           + +GS DKTV +W +   E    F        GH   +  LA+S +  +  S   D T+ 
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632
           +WDL +G      +GH S V+++A+S +   + S  A+  +KLW++    K    E+++ 
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 633 TNRLRSLKTLP 643
           ++ +  ++  P
Sbjct: 162 SDWVSCVRYSP 172

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 109/264 (41%), Gaps = 52/264 (19%)
Query: 420 HSGPVYSASFSPL-GDFILSSSADTTIRLW-------STKLNANLVCYKG------HNYP 465
           H G + +    P+ G ++LS  +D  I L+        +      VC  G      H Y 
Sbjct: 42  HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 466 VWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM-------AGHLSDVD---CVRWH 514
           V  VQ+ P     F SSS D+T ++W  + +Q   +        + H+S V    C+   
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL--- 158
Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY-MASGDEDGTIMM 573
                +A G+    V+L D+ SG C  I  GHR  IL+++ SP   Y +A+   D  + +
Sbjct: 159 -----VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 574 WDL--ASGRCVTPL---------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           WD+  ASG C+  L                 H   V  L ++ +G  L +   D  ++LW
Sbjct: 214 WDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 617 DVTTSTKVLKTEEKSGTNRLRSLK 640
           + +     L    K   N  + LK
Sbjct: 273 NSSNGENTLVNYGKVCNNSKKGLK 296

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 19/236 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-----LNANLVCYKG 461
           P G      +Y  HS     A  SP G +  S      +R+W T      L   +  + G
Sbjct: 45  PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 104
Query: 462 HNYPVWDVQFNPQGHYFAS--SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519
              PV D+ ++ +    A+     +R   ++  D       + G    ++ V +  +  +
Sbjct: 105 ---PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 161
Query: 520 -IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            I +GS D TV +++    +    F  H   + S+  +PDG   AS   DGTI++++   
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 579 GRCVTPL-------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627
           G             + H+  V+ L +S +G+ +AS SAD T+K+W+V T  KV KT
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKT 276

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
           P+G  +     +GH    Y  S++P L  ++LS+S D TI LW           ++A  +
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 226
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
            + GH   V DV ++      F S + D+   IW     +  +P   +  H ++V+C+ +
Sbjct: 227 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
           +    +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 571 IMMWDLA 577
           + +WDL+
Sbjct: 346 LHVWDLS 352

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
           QP   + GH  +   + W+ N N Y+ + S D T+ LWD+++        +   IF GH 
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS- 602
           +++  +A          S  +D  +M+WD  +     P   +  HT+ V  L+++     
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 603 LLASGSADCTVKLWDV 618
           +LA+GSAD TV LWD+
Sbjct: 292 ILATGSADKTVALWDL 307

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
           P+G  +     +GH    Y  S++P L  ++LS+S D TI LW           ++A  +
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 228
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
            + GH   V DV ++      F S + D+   IW     +  +P   +  H ++V+C+ +
Sbjct: 229 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
           +    +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 347
Query: 571 IMMWDLA 577
           + +WDL+
Sbjct: 348 LHVWDLS 354

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
           QP   + GH  +   + W+ N N Y+ + S D T+ LWD+++        +   IF GH 
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS- 602
           +++  +A          S  +D  +M+WD  +     P   +  HT+ V  L+++     
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 603 LLASGSADCTVKLWDV 618
           +LA+GSAD TV LWD+
Sbjct: 294 ILATGSADKTVALWDL 309

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTK--------LNANLV 457
           P+G  +     +GH    Y  S++P L  ++LS+S D TI LW           ++A  +
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 230
Query: 458 CYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM---DRIQPLRIMAGHLSDVDCVRW 513
            + GH   V DV ++      F S + D+   IW     +  +P   +  H ++V+C+ +
Sbjct: 231 -FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 514 HINCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGT 570
           +    +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 571 IMMWDLA 577
           + +WDL+
Sbjct: 350 LHVWDLS 356

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 496 QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHR 547
           QP   + GH  +   + W+ N N Y+ + S D T+ LWD+++        +   IF GH 
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 548 SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS- 602
           +++  +A          S  +D  +M+WD  +     P   +  HT+ V  L+++     
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 603 LLASGSADCTVKLWDV 618
           +LA+GSAD TV LWD+
Sbjct: 296 ILATGSADKTVALWDL 311

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWST-------KLNANLVC 458
           P+G        +GH    Y  S++P L   +LS+S D TI LW         K+      
Sbjct: 163 PSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI 222
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
           + GH   V DV ++      F S + D+   IW   S +  +P   +  H ++V+C+ ++
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
               +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  +
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 572 MMWDLA 577
            +WDL+
Sbjct: 343 NVWDLS 348

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS----GECV---RIFIGHRSMI-- 550
           + GH  +   + W+ N + ++ + S D T+ LWD+S+    G+ V    IF GH +++  
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS-LLAS 606
           +S  +  +  + +  D D  +M+WD  S     P   +  HT+ V  L+++     +LA+
Sbjct: 233 VSWHLLHESLFGSVAD-DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 607 GSADCTVKLWDV 618
           GSAD TV LWD+
Sbjct: 292 GSADKTVALWDL 303

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
           P+G        +GH    Y  S+ S L   +LS+S D T+ LW         K+      
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
           + GH+  V DV ++      F S + D+   IW   S    +P  ++  H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
               +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
            +WDL+
Sbjct: 345 NVWDLS 350

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILS 552
           + GH  +   + W+ N + ++ + S D TV LWD+++G       +   IF GH +++  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 553 LAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS-LLASG 607
           +A          S  +D  + +WD  S     P   +  HT+ V  L+++     +LA+G
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 608 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657
           SAD TV LWD+      L T E S  + +  +   P   T + S    RR
Sbjct: 295 SADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRR 343

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 407 PNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWST-------KLNANLVC 458
           P+G        +GH    Y  S+ S L   +LS+S D T+ LW         K+      
Sbjct: 165 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 224
Query: 459 YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW---SMDRIQPLRIMAGHLSDVDCVRWH 514
           + GH+  V DV ++      F S + D+   IW   S    +P  ++  H ++V+C+ ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 515 INCNYI-ATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR-YMASGDEDGTI 571
               +I ATGS+DKTV LWD+ + +  +  F  H+  I  +  SP     +AS   D  +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 572 MMWDLA 577
            +WDL+
Sbjct: 345 NVWDLS 350

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILS 552
           + GH  +   + W+ N + ++ + S D TV LWD+++G       +   IF GH +++  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 553 LAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSCEGS-LLASG 607
           +A          S  +D  +M+WD  S     P   +  HT+ V  L+++     +LA+G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 608 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657
           SAD TV LWD+      L T E S  + +  +   P   T + S    RR
Sbjct: 295 SADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRR 343

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
           GH+G ++S        + ++ SAD +I+LW    N   V       PV  V+F+P G+YF
Sbjct: 72  GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQCVATWKSPVPVKRVEFSPCGNYF 130
Query: 479 AS-----SSHDRTARIWSMDRI-----------QPLRIMAGH--LSDVDCVRWHINCNYI 520
            +       +  +  I+ ++R            +P+  +  H  L       W     YI
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190
Query: 521 ATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
             G  D  +  +DVS+  E V     H   I  +  SPD  Y  +   D    + D+++
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604
           GH   +  +  + +G  + S  +D +  +W   +G  +  L GHT  +W++   C     
Sbjct: 30  GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 605 ASGSADCTVKLWDVT 619
            +GSAD ++KLWDV+
Sbjct: 90  VTGSADYSIKLWDVS 104

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
           V+++  G + +    +    I+ ++    LR MAGH + V C+ W  N + +++GS    
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGA 197
Query: 529 VRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
           +   DV  +   +    GH S +  LA   DG  +ASG  D  + +WD  S         
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257
Query: 588 HTSCVWTLAY-SCEGSLLASGSA--DCTVKLWDVTTSTKVLKTEEKSGTNRL 636
           H + V  +A+   + +LLA+G    D  +  W+  T  +V   +  S    L
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL 309

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 29/226 (12%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           Q H   +    F P G+ ++SSS D  +++WS K  +N     GH   V D+    +G  
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAG--------HLSDVDCVRW 513
             S+S D T R+W                  D +  + +  G          S  + + +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGT 570
                Y+  G     + + +V S E   I +  +      +++ DG    Y+ +G E+G 
Sbjct: 253 GTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 311
Query: 571 IMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
           +  WDL S  C V   + +        Y   G+L  S   D ++KL
Sbjct: 312 LAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 357

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           G+++  +++ D +      I   H S I  L   P G  + S  +D  + +W +  G   
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
             L+GH + V  +A    G  + S S D T++LW+  T T +
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 29/226 (12%)
Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           Q H   +    F P G+ ++SSS D  +++WS K  +N     GH   V D+    +G  
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAG--------HLSDVDCVRW 513
             S+S D T R+W                  D +  + +  G          S  + + +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGT 570
                Y+  G     + + +V S E   I +  +      +++ DG    Y+ +G E+G 
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 571 IMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
           +  WDL S  C V   + +        Y   G+L  S   D ++KL
Sbjct: 315 LAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 360

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
           G+++  +++ D +      I   H S I  L   P G  + S  +D  + +W +  G   
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
             L+GH + V  +A    G  + S S D T++LW+  T T +
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 51/238 (21%)
Query: 405 IGPNGR-KRSYTLYQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGH 462
           +G  GR  ++  L  GH+ PV   ++ P  D +++S S D T+ +W    +  LV     
Sbjct: 64  LGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP-DGGLV----- 117
Query: 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIA 521
                                        +   +P+  + GH   V  V WH    N + 
Sbjct: 118 -----------------------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148
Query: 522 TGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578
           +   D  + +WDV +G  V + +G   H   I S+  S DG  + +   D  + + +   
Sbjct: 149 SAGXDNVILVWDVGTGAAV-LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
Query: 579 GRCVT----PLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTTSTKVLKTEE 629
           G  V     P  G         +  EG +L +G +  +   V LWD     + L  +E
Sbjct: 208 GTVVAEKDRPHEGTRPV--HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLM-------GHTSC 591
           V +  GH + +L +A  P +   +ASG ED T+M+W++  G  V PL        GHT  
Sbjct: 74  VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 592 VWTLAY--SCEGSLLASGSADCTVKLWDVTTSTKVL 625
           V  +A+  + +  LL++G  D  + +WDV T   VL
Sbjct: 134 VGIVAWHPTAQNVLLSAGX-DNVILVWDVGTGAAVL 168

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 540 VRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLM-------GHTSC 591
           V +  GH + +L +A  P +   +ASG ED T+M+W++  G  V PL        GHT  
Sbjct: 74  VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 592 VWTLAY--SCEGSLLASGSADCTVKLWDVTTSTKVL 625
           V  +A+  + +  LL++G  D  + +WDV T   VL
Sbjct: 134 VGIVAWHPTAQNVLLSAG-CDNVILVWDVGTGAAVL 168

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
           C  I  G +  T+ +WD+++    RI            +LA+SPD +   S   DG I +
Sbjct: 110 CTLIVGGEA-STLSIWDLAA-PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 633
           WDL +   V    GHT     +  S +G+ L +G  D TV+ WD+    ++   ++   T
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL---QQHDFT 224
Query: 634 NRLRSLKTLPT 644
           +++ SL   PT
Sbjct: 225 SQIFSLGYCPT 235

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 436 ILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
           IL +S    + LW    N  L+    C   H+  V  V     G    S S D   ++W 
Sbjct: 96  ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 492 MDRIQPLRIMAGHLSDVDCVRW--HINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHR 547
           + +   L     H + V CV    H +  +++  S D  + LWD     C +    IG  
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSC-SEDNRILLWDT---RCPKPASQIGCS 211
Query: 548 S---MILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-S 602
           +   +  SLA  P        GDE+GT+ + D  S  CV     H+ CV  L +S     
Sbjct: 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP 271
Query: 603 LLASGSADCTVKLWDVTTS 621
            LAS S DC++ + D + S
Sbjct: 272 FLASLSEDCSLAVLDSSLS 290

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 518 NYIATGSSDKTVRLWDVS-SGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575
           N++  GS    VR W+V  SG+ + +    H   +L +  S DG  + +   D T  MWD
Sbjct: 55  NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 576 LASGRCVTPLMGHTSCVWTL------AYSCEGSLLASGSADCTVKLWDVTTSTKVL 625
           L+S + +  +  H + V T+       YSC    + +GS D T+K WD  +S  ++
Sbjct: 115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC----VMTGSWDKTLKFWDTRSSNPMM 165

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 41/222 (18%)
Query: 404 IIGPNGRKRSYTLYQ--------GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN 455
           I GP G    Y + +        GH GP+    F+     +LS+S D T+R+W      +
Sbjct: 222 IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281
Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--------IQPLRIMAGHLSD 507
             C+ GH+  +    +        S S D + R+WS+ +        +  + I AG +S 
Sbjct: 282 QNCFYGHSQSIVSASWVGDDKVI-SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340
Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILS-LAMSPDGRYMASG 565
                   +    A    D  V ++D+       R   G+R  IL+ L +     Y +S 
Sbjct: 341 --------DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ 392
Query: 566 DEDGTI-MMWDLASGRCVTPLMGHTSCVWTLAYSC-EGSLLA 605
           D D    + W+ A  +             ++AYS  EGS++A
Sbjct: 393 DNDYIFDLSWNCAGNKI------------SVAYSLQEGSVVA 422

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 35/232 (15%)
Query: 419 GHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQ 474
           GH GPV+   ++    G  + S S D  + +W  +    + +  +  H+  V  VQ+ P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 475 --GHYFASSSHDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWH-------------IN 516
             G     +S D    +          P+ I+  H   V+   W                
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKE 169
Query: 517 CNYIATGSSDKTVRLWDVSSGECVRIFI----GHRSMILSLAMSPD---GRYMASGDEDG 569
                TG +D  V++W  +S     +      GH   +  +A SP      Y+AS  +D 
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 570 TIMMW--DLASGRCVTPLMGHTS---CVWTLAYSCEGSLLASGSADCTVKLW 616
           T ++W  D   G     L+        +W  ++S  G++LA    D  V LW
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 47/233 (20%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINC 517
           K HN  V  V + P  +   +   DR A +W++     +P  ++        CVRW  N 
Sbjct: 49  KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 108
Query: 518 NYIATGSSDKTVRL--------WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
              A GS  + + +        W V    C  I    RS +LSL   P+   +A+G  D 
Sbjct: 109 KKFAVGSGSRVISICYFEQENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164
Query: 570 TIMMW-----DLASGRCVTP---------LM--GHTSCVWT--LAYSCEGSLLASGSADC 611
              ++     ++      TP         LM    +SC W   + +S  GS +A  S D 
Sbjct: 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 224
Query: 612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664
           TV L D                ++  ++ TL +++ P+ ++ F   + L AAG
Sbjct: 225 TVCLAD---------------ADKKMAVATLASETLPLLAVTFITESSLVAAG 262

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 47/233 (20%)
Query: 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINC 517
           K HN  V  + + P  +   +   DR A +W++     +P  ++        CVRW  N 
Sbjct: 49  KEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 108
Query: 518 NYIATGSSDKTVRL--------WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569
              A GS  + + +        W V    C  I    RS +LSL   P+   +A+G  D 
Sbjct: 109 KKFAVGSGSRVISICYFEQENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164
Query: 570 TIMMW-----DLASGRCVTP---------LM--GHTSCVWT--LAYSCEGSLLASGSADC 611
              ++     ++      TP         LM    +SC W   + +S  GS +A  S D 
Sbjct: 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 224
Query: 612 TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664
           TV L D                ++  ++ TL +++ P+ ++ F   + L AAG
Sbjct: 225 TVCLAD---------------ADKKMAVATLASETLPLLAVTFITESSLVAAG 262

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 21/216 (9%)
Query: 462 HNYPVWDVQFNPQGH-----YFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD----CV 511
           HN P++ VQFN          FA+   +R   ++       +R++  ++ +D D      
Sbjct: 53  HNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADENFYTC 111
Query: 512 RWHINCN----YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD 566
            W  + N     +A   S   +R+ +  + +C++ ++GH + I  L   P D   + S  
Sbjct: 112 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 171
Query: 567 EDGTIMMWDLASGRCVT---PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623
           +D  + +W++ +   V     + GH   V +  Y   G  + S   D ++KLW + +   
Sbjct: 172 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
Query: 624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659
           +   +E    N  ++ +  P  S  ++   FS R++
Sbjct: 232 MNAIKESYDYNPNKTNR--PFISQKIHFPDFSTRDI 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	670
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.46
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.45
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.35
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.31
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.19
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.06
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.05
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.97
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.96
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.92
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.9
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.88
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.87
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.86
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.83
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.8
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.79
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.74
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.72
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.72
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.71
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.68
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.64
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.61
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.6
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.59
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.58
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.56
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.53
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.52
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.5
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.48
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.45
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.42
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.42
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.4
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.4
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.34
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.3
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.27
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.25
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.25
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.22
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.22
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.2
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.17
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.12
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.12
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.11
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.04
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.02
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.0
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.0
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.94
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.92
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.91
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.85
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.8
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.76
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.72
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.71
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.69
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.65
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.64
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.62
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.57
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.54
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.54
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.54
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.53
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.52
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.51
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.5
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.49
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.43
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.42
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.36
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.34
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.33
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.23
3ott_A	758	Two-component system sensor histidine kinase; beta	97.2
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.18
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.13
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.12
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.09
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.05
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.05
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.01
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.0
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.97
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.89
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.84
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.76
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.59
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.59
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.59
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.55
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.54
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.37
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.31
3ott_A	758	Two-component system sensor histidine kinase; beta	96.29
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.1
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.89
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.88
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.42
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.41
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.18
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.8
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.25
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.93
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.14
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.65
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	90.99
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	82.99
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.49
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.72
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	80.44

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-44  Score=391.94  Aligned_cols=282  Identities=29%  Similarity=0.506  Sum_probs=265.2

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      +++.+|.++|+|++|+|++++||+|+.||.|+|||+.+                            ......+.+|.+.|
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~----------------------------~~~~~~l~~h~~~V  153 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------GDFERTLKGHTDSV  153 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------CCCCEEECCCSSCE
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEeccCCcE
Confidence            35678999999999999999999999999999999875                            23446678999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ++++|+|++++|++|+.||+|++||+.++.++..+.+|...|.+++|+|++.+|++|+.|++|++||++++.++..+.+|
T Consensus       154 ~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h  233 (410)
T 1vyh_C          154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH  233 (410)
T ss_dssp             EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC--------------------CCEEEE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD--------------------GRYMAS  564 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~--------------------g~~l~s  564 (670)
                      ...|.+++|+|++++|++|+.|++|++||+.++++...+.+|...|.+++|+|+                    |.+|++
T Consensus       234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s  313 (410)
T 1vyh_C          234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  313 (410)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999996                    679999


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                      |+.||.|++||++++.++..+.+|...|++++|+|+|.+|++|+.||+|++||+.++.               .+..+..
T Consensus       314 gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---------------~~~~~~~  378 (410)
T 1vyh_C          314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------------CMKTLNA  378 (410)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---------------CCEEEEC
T ss_pred             EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------eEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999997653               3456678


Q ss_pred             CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          645 KSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       645 ~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      |...|.+++|+|++.+|++|+.||+
T Consensus       379 h~~~v~~l~~~~~~~~l~sgs~D~~  403 (410)
T 1vyh_C          379 HEHFVTSLDFHKTAPYVVTGSVDQT  403 (410)
T ss_dssp             CSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            8899999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=371.26  Aligned_cols=285  Identities=22%  Similarity=0.368  Sum_probs=262.0

Q ss_pred             EEEeecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          344 FYTFINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d----~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      +....+|.+.|++++|+|+    +.+||+|+.|++|+||++....                          ......+.+
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--------------------------~~~~~~l~g   78 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--------------------------LDLQWSLEG   78 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--------------------------EEEEEEECC
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--------------------------eeeeeeecc
Confidence            3455678999999999974    6799999999999999986411                          123345789


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      |...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+++++|+|++.+|++|+.||.|++|++++++...
T Consensus        79 h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~  158 (321)
T 3ow8_A           79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY  158 (321)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      .+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.||.|++||++++
T Consensus       159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  659 (670)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~  659 (670)
                      ..+..+.+|...|.+++|+|++.+|++|+.||+|+|||+.++.               .+..+..|...|.+++|+|++.
T Consensus       239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---------------~~~~~~~h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---------------CVHTFFDHQDQVWGVKYNGNGS  303 (321)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------EEEEECCCSSCEEEEEECTTSS
T ss_pred             ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---------------EEEEEcCCCCcEEEEEECCCCC
Confidence            9999999999999999999999999999999999999998764               3456678889999999999999


Q ss_pred             EEEEeeCCCC
Q 005913          660 LFAAGALSKT  669 (670)
Q Consensus       660 ~La~gs~dgs  669 (670)
                      +|++|+.||+
T Consensus       304 ~l~s~~~d~~  313 (321)
T 3ow8_A          304 KIVSVGDDQE  313 (321)
T ss_dssp             EEEEEETTCC
T ss_pred             EEEEEeCCCe
Confidence            9999999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.5e-43  Score=364.29  Aligned_cols=283  Identities=23%  Similarity=0.362  Sum_probs=256.1

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      ..++.+|.+.|++++|+|++++||+|+.||.|+|||+.+                            ......+.+|..+
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~----------------------------~~~~~~~~~~~~~   57 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET----------------------------QVEVRSIQVTETP   57 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSC
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----------------------------CceeEEeeccCCc
Confidence            346888999999999999999999999999999999875                            2345677889999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEec
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMA  502 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~  502 (670)
                      |.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++ .....+.
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  137 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999877 4556788


Q ss_pred             ccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEeCCC
Q 005913          503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--DGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       503 ~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp--~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      +|...|.+++|+| ++.+|++|+.|++|++||++++.....+. +|...+..+.|+|  ++.+|++|+.||.|++||+++
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            9999999999999 67899999999999999999887665554 5667899999987  778999999999999999999


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      ++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+..               .+..+..+...+.+++|+|++
T Consensus       218 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~  282 (304)
T 2ynn_A          218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---------------VEKTLNVGLERSWCIATHPTG  282 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---------------EEEEECCSSSSEEEEEECTTC
T ss_pred             CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------eeeeccCCCccEEEEEECCCC
Confidence            99999999999999999999999999999999999999998764               345666778899999999987


Q ss_pred             c--EEEEeeCCCC
Q 005913          659 L--LFAAGALSKT  669 (670)
Q Consensus       659 ~--~La~gs~dgs  669 (670)
                      .  ++|+|+.+|.
T Consensus       283 ~~~~~asg~~~g~  295 (304)
T 2ynn_A          283 RKNYIASGFDNGF  295 (304)
T ss_dssp             GGGCEEEEETTEE
T ss_pred             CceEEEEecCCce
Confidence            5  6899988763

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-42  Score=365.82  Aligned_cols=284  Identities=21%  Similarity=0.366  Sum_probs=258.5

Q ss_pred             eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       342 ~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      .+..++.+|.+.|++++|+||+++|++|+.||.|+|||+.+                            ......+..|.
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~----------------------------~~~~~~~~~~~   97 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT----------------------------TNKVHAIPLRS   97 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------CCEEEEEECSS
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------CCcceEeecCC
Confidence            34567889999999999999999999999999999999864                            23455677899


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      ..|.+++|+|++++|++|+.|+.|++|++.+..    ....+.+|...|.++.|++++. +++++.|++|++||+.++++
T Consensus        98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~  176 (340)
T 1got_B           98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ  176 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE
Confidence            999999999999999999999999999998753    4566789999999999998875 89999999999999999999


Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                      +..+.+|...|.+++|+|+++++++|+.|++|++||++++.++..+.+|...|.+++|+|+|++|++|+.||.|++||++
T Consensus       177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913          578 SGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS  655 (670)
Q Consensus       578 ~~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs  655 (670)
                      +++.+..+..  +...|++++|+|+|++|++|+.||.|++||+.+...               +..+..|..+|.+++|+
T Consensus       257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~---------------~~~~~~h~~~v~~~~~s  321 (340)
T 1got_B          257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR---------------AGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------EEEEECCSSCEEEEEEC
T ss_pred             CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE---------------eeEeecCCCcEEEEEEc
Confidence            9988877653  335799999999999999999999999999877542               44567889999999999


Q ss_pred             cCCcEEEEeeCCCC
Q 005913          656 RRNLLFAAGALSKT  669 (670)
Q Consensus       656 ~~~~~La~gs~dgs  669 (670)
                      |+|.+||+|+.||+
T Consensus       322 ~dg~~l~s~s~D~~  335 (340)
T 1got_B          322 DDGMAVATGSWDSF  335 (340)
T ss_dssp             TTSSCEEEEETTSC
T ss_pred             CCCCEEEEEcCCcc
Confidence            99999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-41  Score=361.30  Aligned_cols=285  Identities=24%  Similarity=0.370  Sum_probs=257.5

Q ss_pred             eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       342 ~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      ....++.+|.+.|+|++|+||+++||+|+.||.|+|||..+                            ......+..|.
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~----------------------------~~~~~~~~~~~  106 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT----------------------------TNKEHAVTMPC  106 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------CCEEEEEECSS
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCcceEEecCC
Confidence            34557889999999999999999999999999999999764                            12344566788


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI  495 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~  495 (670)
                      ..|.+++|+|++.+|++|+.|+.+++|++...      .....+.+|...|.++.|+|++..|++++.|++|++||++++
T Consensus       107 ~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~  186 (354)
T 2pbi_B          107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG  186 (354)
T ss_dssp             SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence            99999999999999999999999999998643      345677789999999999999999999999999999999999


Q ss_pred             ceeEEecccCCCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          496 QPLRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       496 ~~~~~~~~~~~~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                      +.+..+.+|...|.+++|+|  ++++|++|+.||+|++||+++++++..+.+|...|.+++|+|++.+|++|+.||.|++
T Consensus       187 ~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~l  266 (354)
T 2pbi_B          187 QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL  266 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Confidence            99999999999999999987  5789999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913          574 WDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS  651 (670)
Q Consensus       574 wDl~~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  651 (670)
                      ||+++++.+..+..+  ...+.+++|+|+|.+|++|+.||+|++||+.++..               +..+..|..+|.+
T Consensus       267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~---------------~~~l~~h~~~v~~  331 (354)
T 2pbi_B          267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR---------------VSILFGHENRVST  331 (354)
T ss_dssp             EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE---------------EEEECCCSSCEEE
T ss_pred             EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce---------------EEEEECCCCcEEE
Confidence            999999887776544  35789999999999999999999999999977642               4456788999999


Q ss_pred             EEEecCCcEEEEeeCCCC
Q 005913          652 LQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       652 l~fs~~~~~La~gs~dgs  669 (670)
                      ++|+|+|.+||+|+.||+
T Consensus       332 l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          332 LRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             EEECTTSSCEEEEETTSE
T ss_pred             EEECCCCCEEEEEcCCCC
Confidence            999999999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-41  Score=355.80  Aligned_cols=296  Identities=22%  Similarity=0.412  Sum_probs=248.1

Q ss_pred             eEEEeecCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          343 SFYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       343 ~~~t~~~~~~-~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      +..++.+|.+ .|.+++|+|+|++||+|+.|+.|+||++.....                         ........+|.
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-------------------------~~~~~~~~~h~   61 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-------------------------ICKSVLSEGHQ   61 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-------------------------EEEEEECSSCS
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-------------------------eeeeeeccccC
Confidence            4456777877 899999999999999999999999999864210                         01122346899


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc---
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---  496 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~---  496 (670)
                      +.|.+++|+|++++|++|+.|++|++|++..+.  ++..+.+|..+|.+++|+|++.+|++|+.|++|++||++...   
T Consensus        62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  141 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE  141 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence            999999999999999999999999999998764  567888999999999999999999999999999999998764   


Q ss_pred             eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913          497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       497 ~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw  574 (670)
                      .+..+.+|...|.+++|+|++++|++|+.|++|++||.+++.  +...+.+|...|.+++|+|+|++|++|+.||.|++|
T Consensus       142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW  221 (345)
T ss_dssp             EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence            456778999999999999999999999999999999998875  456788999999999999999999999999999999


Q ss_pred             eCCCC---------------eeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          575 DLASG---------------RCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       575 Dl~~~---------------~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      |....               .++..+.+ |...|++++|+|++..|++++.|+.|++|+..........      .....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~------~~~~~  295 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP------TFSLT  295 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC------CEEEE
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee------eEEEE
Confidence            96321               33445554 8899999999999999999999999999998765321100      00001


Q ss_pred             ccccCCCCCCeEEEEEecCC-cEEEEeeCCCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT  669 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~-~~La~gs~dgs  669 (670)
                      ......|...|.+++|+|++ .+||+|+.||+
T Consensus       296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             EEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             eeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence            22345788899999999998 59999999986

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=100.00  E-value=5.5e-44  Score=321.77  Aligned_cols=139  Identities=32%  Similarity=0.584  Sum_probs=130.2

Q ss_pred             cCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCC
Q 005913           61 EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLS  140 (670)
Q Consensus        61 ~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~  140 (670)
                      ++||+.|+++|.+|++||++|||+||+||++|||||||||||+||++| .++|++||++|+++|+.+|.++|++|++|++
T Consensus         4 ~~dp~~y~~~y~~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~   82 (148)
T 2j49_A            4 MNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNS   82 (148)
T ss_dssp             ---CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCS
T ss_pred             ccCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCC
Confidence            578999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             hhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcc---hHhHhhcceeEEEEcCCCCC
Q 005913          141 PSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERINFQVSPGQPS  200 (670)
Q Consensus       141 ~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~~~~~~~~  200 (670)
                      |+|+++|+++++||+|||+|+||++++++|++||+++++.   +|++|||+||+|++++|.|+
T Consensus        83 p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~gg~~ll~Iin~~i~i~v~~~~p~  145 (148)
T 2j49_A           83 IDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTA  145 (148)
T ss_dssp             HHHHHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC-----
T ss_pred             HHHHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCcccHHHHHHHHHHheeEeeeCCCCC
Confidence            9999999999999999999999999999999999999988   99999999999999998775

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.3e-41  Score=358.12  Aligned_cols=285  Identities=23%  Similarity=0.277  Sum_probs=236.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      +...|.+++|||||++|++|+ |+++++|+..........                 .............|...|++++|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~~~   90 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----------------AAPNEGFCSAGVQTEAGVADLTW   90 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----------------GTTCGGGCSEEEEESSCEEEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----------------ccCCcceeeeeeccCCCEEEEEE
Confidence            456699999999999999886 778888874210000000                 00001122334456788999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEE----eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVC----YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~----~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      +|++ .|++|+.||+|+|||+.+++.+..    ..+|...|++++|+|+|.+|++|+.|++|++||+++++++..+.+|.
T Consensus        91 s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  169 (344)
T 4gqb_B           91 VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA  169 (344)
T ss_dssp             ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence            9985 688999999999999998876544    34899999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCee
Q 005913          506 SDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       506 ~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      ..|.+++|+|++. +|++|+.|++|++||++++++...+.  .|...+.+++|+|+ +++|++|+.||.|++||++++++
T Consensus       170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC  249 (344)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred             CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence            9999999999884 78999999999999999999888764  45567999999995 67899999999999999999999


Q ss_pred             eEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc-
Q 005913          582 VTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-  659 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-  659 (670)
                      +..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++                +..+..|...|++++|+|++. 
T Consensus       250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----------------~~~~~~H~~~V~~v~~sp~~~~  313 (344)
T 4gqb_B          250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----------------LFRSQAHRDFVRDATWSPLNHS  313 (344)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----------------EEEECCCSSCEEEEEECSSSTT
T ss_pred             EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----------------EEEEcCCCCCEEEEEEeCCCCe
Confidence            99999999999999999998 589999999999999987753                224567889999999999985 


Q ss_pred             EEEEeeCCCC
Q 005913          660 LFAAGALSKT  669 (670)
Q Consensus       660 ~La~gs~dgs  669 (670)
                      +|++|+.||+
T Consensus       314 llas~s~D~~  323 (344)
T 4gqb_B          314 LLTTVGWDHQ  323 (344)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEcCCCe
Confidence            7889999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.8e-40  Score=347.16  Aligned_cols=293  Identities=26%  Similarity=0.376  Sum_probs=253.3

Q ss_pred             EEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ..++.+|.+.|++++|+|++ ++|++|+.|++|++|++......                       .......+.+|..
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-----------------------~~~~~~~~~~h~~   66 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-----------------------FGVPVRSFKGHSH   66 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-----------------------EEEEEEEEECCSS
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-----------------------ccccceEEeCCcc
Confidence            34678899999999999965 89999999999999998631110                       1234567889999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                      .|++++|+|++++|++|+.|++|++||+.+++.+..+.+|..+|.+++|+|++.+|++|+.|++|++||++ +..+..+.
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~  145 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL  145 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997 45778888


Q ss_pred             ccCCCeeEEEEcCC------CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          503 GHLSDVDCVRWHIN------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       503 ~~~~~v~~v~~~p~------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      +|...|.+++|+|+      +..+++++.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~  225 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL  225 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            99999999999985      448999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                      .+++++..+..+ ..|.+++|+|++.+|++++.+ .+++|++...........       ........+...|.+++|+|
T Consensus       226 ~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp  296 (319)
T 3frx_A          226 AAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-------EFAGYSKAAEPHAVSLAWSA  296 (319)
T ss_dssp             TTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECC-------CCTTCCGGGCCCEEEEEECT
T ss_pred             CCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-------cccccccCcCcceeEEEECC
Confidence            999999888754 679999999999999988865 599999986543221110       00111223456799999999


Q ss_pred             CCcEEEEeeCCCC
Q 005913          657 RNLLFAAGALSKT  669 (670)
Q Consensus       657 ~~~~La~gs~dgs  669 (670)
                      +|++|++|+.||+
T Consensus       297 dg~~l~sg~~Dg~  309 (319)
T 3frx_A          297 DGQTLFAGYTDNV  309 (319)
T ss_dssp             TSSEEEEEETTSC
T ss_pred             CCCEEEEeecCce
Confidence            9999999999986

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=100.00  E-value=1.1e-43  Score=325.39  Aligned_cols=150  Identities=29%  Similarity=0.555  Sum_probs=144.6

Q ss_pred             CCchhhcccccccccccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhH
Q 005913           45 LNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDH  124 (670)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~  124 (670)
                      .+|+++++.+.++. +++||+.|+++|.+||+||++|||+||+||++|||||||||||+||++|+.++|+.||+||+++|
T Consensus         6 ~~e~~~~~~~~~~~-~~~dp~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~   84 (156)
T 2nxp_A            6 EDQPDVSAVLSAYN-QQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQ   84 (156)
T ss_dssp             --CCCHHHHHGGGS-SCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGS
T ss_pred             cCCchHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHh
Confidence            47889999998886 66899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEc
Q 005913          125 EMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS  195 (670)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~  195 (670)
                      +.+|+++|++|++|++|+|+++|++++.||+|||+|+||++++++|++||+++++.+|++|||+||+|+++
T Consensus        85 ~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~  155 (156)
T 2nxp_A           85 ECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIF  155 (156)
T ss_dssp             CGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHHHHheeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-41  Score=364.25  Aligned_cols=290  Identities=23%  Similarity=0.380  Sum_probs=255.1

Q ss_pred             ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (670)
Q Consensus       341 s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (670)
                      ..+..++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+                            ......+.+|
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~----------------------------~~~~~~~~~h  107 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT----------------------------SQKTHAIKLH  107 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT----------------------------TEEEEEEECC
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CccceEEecC
Confidence            456678899999999999999999999999999999999865                            2345667889


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------eeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEEC
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSM  492 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~  492 (670)
                      ...|.+++|+|++++|++|+.|++|++|++.+..       ....+.+|...|.++.|+|+ +..|++|+.|++|++||+
T Consensus       108 ~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~  187 (380)
T 3iz6_a          108 CPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV  187 (380)
T ss_dssp             CTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred             CCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence            9999999999999999999999999999987532       34567889999999999996 557999999999999999


Q ss_pred             CCCceeEEe-----cccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECC-CCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          493 DRIQPLRIM-----AGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       493 ~~~~~~~~~-----~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      .+++.+..+     .+|...|.+++|++ ++++|++|+.|++|++||++ .+.++..+.+|.+.|.+++|+|+|.+|++|
T Consensus       188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~  267 (380)
T 3iz6_a          188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG  267 (380)
T ss_dssp             TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred             CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE
Confidence            999988877     67899999999987 88999999999999999998 567888999999999999999999999999


Q ss_pred             ECCCeEEEEeCCCCeeeEEeeCCC-------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          566 DEDGTIMMWDLASGRCVTPLMGHT-------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       566 ~~dg~I~iwDl~~~~~~~~~~~h~-------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      +.||.|++||++++..+..+..+.       ..|++++|+|+|++|++|+.||.|++||+..+......           
T Consensus       268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-----------  336 (380)
T 3iz6_a          268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL-----------  336 (380)
T ss_dssp             CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE-----------
T ss_pred             cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE-----------
Confidence            999999999999999988776543       24899999999999999999999999999876532111           


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ......|...|.+++|+|+|.+|++|+.||+
T Consensus       337 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             CCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             ecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence            1122568889999999999999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-39  Score=338.76  Aligned_cols=284  Identities=25%  Similarity=0.493  Sum_probs=255.6

Q ss_pred             eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ..+++.+|.+.|++++|+|++++||+|+.||.|+||++..                            ......+.+|..
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----------------------------~~~~~~~~~h~~   66 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----------------------------GKFEKTISGHKL   66 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCCSS
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----------------------------cccchhhccCCC
Confidence            3567888999999999999999999999999999999864                            224456778999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                      .|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.++.|+|++.+|++|+.|++|++||+++++.+..+.
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  146 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP  146 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      .|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .+..++.+++|+|++++|++++.||.|++||+.++++
T Consensus       147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  226 (312)
T 4ery_A          147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC  226 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence            999999999999999999999999999999999999887764 4567899999999999999999999999999999999


Q ss_pred             eEEeeCCCcceEE--EEE-cCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          582 VTPLMGHTSCVWT--LAY-SCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       582 ~~~~~~h~~~V~s--l~~-s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      +..+.+|...+..  ..+ .+++.+|++|+.||.|++||+.++.               .+..+..|..+|.+++|+|++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---------------~~~~~~~h~~~v~~~~~~p~~  291 (312)
T 4ery_A          227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---------------IVQKLQGHTDVVISTACHPTE  291 (312)
T ss_dssp             EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC---------------EEEEECCCSSCEEEEEECSSS
T ss_pred             EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch---------------hhhhhhccCCcEEEEeecCcC
Confidence            9999888765332  233 4678999999999999999998754               345677888999999999999


Q ss_pred             cEEEEee--CCCC
Q 005913          659 LLFAAGA--LSKT  669 (670)
Q Consensus       659 ~~La~gs--~dgs  669 (670)
                      .++++++  .|++
T Consensus       292 ~~l~s~~~~~d~~  304 (312)
T 4ery_A          292 NIIASAALENDKT  304 (312)
T ss_dssp             SEEEEEECTTTCC
T ss_pred             CceEEEEccCCcc
Confidence            9999987  4554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.2e-39  Score=342.40  Aligned_cols=300  Identities=21%  Similarity=0.334  Sum_probs=245.3

Q ss_pred             eEEEeecCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee
Q 005913          343 SFYTFINTHNGLNCASI-----SQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~f-----s~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (670)
                      +..++.+|.+.|++++|     ++ |+++||+|+.|++|+||++.......                     ........
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~---------------------~~~~~~~~   71 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG---------------------YFGIPHKA   71 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------BSEEEEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------ccccccch
Confidence            34567889999999999     76 99999999999999999987421100                     01234567


Q ss_pred             eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ  496 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~  496 (670)
                      +.+|...|++++|+|++.+|++|+.|++|++||+.+++.+..+.+|..+|++++|+|++.+|++|+.|++|++||+... 
T Consensus        72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-  150 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-  150 (343)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-
T ss_pred             hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999999843 


Q ss_pred             eeEEec---ccCCCeeEEEEcCCC----------CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE
Q 005913          497 PLRIMA---GHLSDVDCVRWHINC----------NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       497 ~~~~~~---~~~~~v~~v~~~p~~----------~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~  563 (670)
                      ......   +|...|.+++|+|++          .+|++++.||.|++|| .+++....+.+|...|.+++|+|+|++|+
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  229 (343)
T 2xzm_R          151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIA  229 (343)
T ss_dssp             EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEE
Confidence            333333   688899999999987          7999999999999999 55677788899999999999999999999


Q ss_pred             EEECCCeEEEEeCCCC-eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913          564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL  642 (670)
Q Consensus       564 sg~~dg~I~iwDl~~~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  642 (670)
                      +|+.||.|++||+... .....+ .+...|.+++|+|++.++++| .|+.|++|++.+..........  ..........
T Consensus       230 sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~  305 (343)
T 2xzm_R          230 TGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIE--AEPITKAEGQ  305 (343)
T ss_dssp             EEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECC--CCSGGGBTTB
T ss_pred             EEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEee--cCcchhhhhh
Confidence            9999999999999544 344433 355679999999999887655 5888999999876532200000  0000111223


Q ss_pred             CCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          643 PTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       643 ~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ..+...|.+++|+|+|.+|++|+.||+
T Consensus       306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~  332 (343)
T 2xzm_R          306 KGKNPQCTSLAWNALGKKLFAGFTDGV  332 (343)
T ss_dssp             CCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred             cCCCCceEEEEECCCCCeEEEecCCce
Confidence            367778999999999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-40  Score=354.52  Aligned_cols=281  Identities=20%  Similarity=0.258  Sum_probs=235.6

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          348 INTHNGLNCASISQDGSLVAGGFS------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      ..|...|+|++|||||++||+|+.      |+.|++|+......                        .........+|.
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~------------------------~~~~~~~~~~~~   94 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP------------------------NESLCTAGVQTE   94 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---------------------------CGGGCSEEEECS
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc------------------------ceeEecccCCCC
Confidence            357788999999999999999997      67788888654211                        112334456799


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee----EEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~----~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      ..|++++|+|++. +++++.||+|+|||+.+++..    ....+|...|++++|+|++.+|++|+.|++|++||+++++.
T Consensus        95 ~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~  173 (357)
T 4g56_B           95 AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV  173 (357)
T ss_dssp             SCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            9999999999875 556788999999999887653    33457999999999999999999999999999999999999


Q ss_pred             eEEecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCeEEE
Q 005913          498 LRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMM  573 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~-g~~l~sg~~dg~I~i  573 (670)
                      +..+.+|...|.+++|+|++. ++++++.||+|++||+++++++..+.  .|...+.+++|+|+ +.+|++|+.|+.|++
T Consensus       174 ~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence            999999999999999999875 78999999999999999988776543  46678999999997 568999999999999


Q ss_pred             EeCCCCeeeEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913          574 WDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL  652 (670)
Q Consensus       574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  652 (670)
                      ||+++++++..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++.               + ....|..+|+++
T Consensus       254 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~---------------~-~~~~H~~~V~~v  317 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV---------------F-RDLSHRDFVTGV  317 (357)
T ss_dssp             EESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE---------------E-EECCCSSCEEEE
T ss_pred             EECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE---------------e-EECCCCCCEEEE
Confidence            9999999999999999999999999987 5899999999999999987542               2 223688899999


Q ss_pred             EEec-CCcEEEEeeCCCC
Q 005913          653 QFSR-RNLLFAAGALSKT  669 (670)
Q Consensus       653 ~fs~-~~~~La~gs~dgs  669 (670)
                      +|+| ++.+||+|+.||+
T Consensus       318 afsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          318 AWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             EECSSSTTEEEEEETTSC
T ss_pred             EEeCCCCCEEEEEcCCCe
Confidence            9998 7999999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-40  Score=343.97  Aligned_cols=286  Identities=22%  Similarity=0.383  Sum_probs=234.1

Q ss_pred             eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ec-C
Q 005913          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QG-H  420 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h  420 (670)
                      +..++.+|.+.|++++|+|+  +||+|+.||.|+||++....                          ......+ .+ |
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~--------------------------~~~~~~~~~~~h   57 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD--------------------------FTLIDVLDETAH   57 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC--------------------------CEEEEEECTTCC
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC--------------------------eEEEEEEecCCc
Confidence            34567889999999999988  99999999999999986411                          1122233 34 9


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      .+.|++++|+|++++|++|+.|++|++|++..       ...+..+.+|...|.+++|+|++.+|++|+.|++|++||++
T Consensus        58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999999999999999999853       34567788999999999999999999999999999999994


Q ss_pred             C----CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC--cEEEEEecCCCCeEEEEEcCC--CCEEEEE
Q 005913          494 R----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPD--GRYMASG  565 (670)
Q Consensus       494 ~----~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~sp~--g~~l~sg  565 (670)
                      .    .+++..+.+|...|.+++|+|++++|++|+.|++|++||..++  +++..+.+|.+.|.+++|+|+  +.+|++|
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  217 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG  217 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence            3    2466788899999999999999999999999999999999876  678889999999999999998  7799999


Q ss_pred             ECCCeEEEEeCCCC--------eeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccc
Q 005913          566 DEDGTIMMWDLASG--------RCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL  636 (670)
Q Consensus       566 ~~dg~I~iwDl~~~--------~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  636 (670)
                      +.|+.|++||+..+        .+...+.+ |...|++++|++++ +|++++.||+|+||+...+...            
T Consensus       218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~------------  284 (330)
T 2hes_X          218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK------------  284 (330)
T ss_dssp             ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE------------
T ss_pred             eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE------------
Confidence            99999999998764        34555555 89999999999765 8999999999999998654210            


Q ss_pred             ccccccCCCCC-CeEEEEEec--CCcEEEEeeCCCC
Q 005913          637 RSLKTLPTKST-PVYSLQFSR--RNLLFAAGALSKT  669 (670)
Q Consensus       637 ~~~~~~~~~~~-~V~~l~fs~--~~~~La~gs~dgs  669 (670)
                      ........|.. .|.+++|+|  ++.+||+|+.||+
T Consensus       285 ~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          285 VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred             EEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence            00112345555 899999999  6899999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.1e-40  Score=342.77  Aligned_cols=263  Identities=18%  Similarity=0.394  Sum_probs=245.2

Q ss_pred             ccceecCCCCCCce-eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          329 RNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       329 ~~~~~l~~~~~ps~-~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      ...+++|+...+.. ..+++.+|...|.+++|++++.++++|+.|+.|++||+.+                         
T Consensus        57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~-------------------------  111 (321)
T 3ow8_A           57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN-------------------------  111 (321)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------
T ss_pred             CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------
Confidence            45678887654443 3457788999999999999999999999999999999875                         


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v  487 (670)
                         ......+..|...+.+++|+|++++|++|+.||.|++|++.++.....+..|...|.+++|+|++.+|++|+.||.|
T Consensus       112 ---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i  188 (321)
T 3ow8_A          112 ---GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII  188 (321)
T ss_dssp             ---TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ---CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence               23455667888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      ++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+|.+|++|+.
T Consensus       189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      ||.|++||+.+++++..+.+|...|++++|+|++.+|++++.||+|+|||+.
T Consensus       269 D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999963

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-39  Score=350.27  Aligned_cols=298  Identities=26%  Similarity=0.437  Sum_probs=246.9

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      ....+|.+.|+|++|||||++||+|+ ++.++||++................          .............+...|
T Consensus        58 ~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~v  126 (393)
T 1erj_A           58 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN----------KDPENLNTSSSPSSDLYI  126 (393)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------------------CCCCBE
T ss_pred             EEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc----------cccccccccccCCCceeE
Confidence            34457899999999999999999985 7899999987643322111100000          000000111112344569


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||+++++....+. +
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~  205 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-I  205 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998877776 5


Q ss_pred             CCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEE-------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          505 LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       505 ~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      ...+.+++|+| ++++|++|+.||.|++||++++..+..+       .+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            57899999999 8999999999999999999999988776       578999999999999999999999999999999


Q ss_pred             CCC------------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          577 ASG------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       577 ~~~------------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                      .+.            .+...+.+|...|.+++|+|++.+|++|+.||+|++||+.++..               +..+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~---------------~~~l~~  350 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---------------LLMLQG  350 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE---------------EEEEEC
T ss_pred             CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---------------EEEECC
Confidence            753            45567789999999999999999999999999999999987643               445678


Q ss_pred             CCCCeEEEEEec------CCcEEEEeeCCCC
Q 005913          645 KSTPVYSLQFSR------RNLLFAAGALSKT  669 (670)
Q Consensus       645 ~~~~V~~l~fs~------~~~~La~gs~dgs  669 (670)
                      |...|.+++|++      ++.+||+|+.||+
T Consensus       351 h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          351 HRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             CSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             CCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence            889999999986      6899999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.8e-40  Score=354.44  Aligned_cols=262  Identities=28%  Similarity=0.526  Sum_probs=242.5

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+...... ..++.+|.+.|++++|+|++++||+|+.||+|+|||+.+                          
T Consensus       129 Dg~i~vwd~~~~~~-~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--------------------------  181 (410)
T 1vyh_C          129 DATIKVWDYETGDF-ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--------------------------  181 (410)
T ss_dssp             SSCEEEEETTTCCC-CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred             CCeEEEEECCCCcE-EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------
Confidence            34678887654432 346778999999999999999999999999999999864                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                        ......+.+|...|++++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.+|++|+.|++|+
T Consensus       182 --~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          182 --FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             --SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             --CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence              234556778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCC--------------------CCEEEEEEcCCcEEEEECCCCcEEEEEecCCC
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHIN--------------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~--------------------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  548 (670)
                      +||+.++.....+.+|...|.+++|+|+                    +.+|++|+.|++|++||++++.++..+.+|..
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            9999999999999999999999999996                    67899999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      .|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|+||++.
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999863

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=100.00  E-value=2.5e-42  Score=308.49  Aligned_cols=134  Identities=31%  Similarity=0.694  Sum_probs=127.7

Q ss_pred             ChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChh
Q 005913           63 GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPS  142 (670)
Q Consensus        63 ~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~  142 (670)
                      -|+.|+++|.+||+||++|||+||+||++|||||||||||+||++|+.++|++||+||+++|+.+ .++|++|++|++|+
T Consensus         4 ~~~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e   82 (138)
T 2j4b_A            4 MKDQMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQ   82 (138)
T ss_dssp             ---CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHH
T ss_pred             hHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             hhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEcCC
Q 005913          143 HLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG  197 (670)
Q Consensus       143 ~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~  197 (670)
                      |+++|+++++||+|||+|+||++++++|++||+++++.+|++|||+||+|++++|
T Consensus        83 ~l~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~g  137 (138)
T 2j4b_A           83 HIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG  137 (138)
T ss_dssp             HHHHCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred             HHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHCCChHHHHHHHHheeeEeeCC
Confidence            9999999999999999999999999999999999999999999999999999876

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.7e-39  Score=366.25  Aligned_cols=304  Identities=21%  Similarity=0.303  Sum_probs=247.2

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+.. +..+..++.+|.+.|++++|+|||++||+|+.|++|+||++..........                  
T Consensus       169 D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~------------------  229 (611)
T 1nr0_A          169 DNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE------------------  229 (611)
T ss_dssp             TSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB------------------
T ss_pred             CCeEEEEECC-CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeec------------------
Confidence            3567888743 345566788899999999999999999999999999999986532211000                  


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-------------------------------
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-------------------------------  457 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~-------------------------------  457 (670)
                         .......+|.+.|++++|+|++++|++|+.|++|++||+.+++.+.                               
T Consensus       230 ---~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          230 ---DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             ---CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             ---cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence               0000122799999999999999999999999999999998765443                               


Q ss_pred             ------------EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-c----------------------
Q 005913          458 ------------CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-A----------------------  502 (670)
Q Consensus       458 ------------~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~----------------------  502 (670)
                                  .+.+|...|++++|+|+|.+|++++.|++|++||+.++.....+ .                      
T Consensus       307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~  386 (611)
T 1nr0_A          307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW  386 (611)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred             EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEc
Confidence                        34578999999999999999999999999999998765433221 0                      


Q ss_pred             -----------------------------------------------------------ccCCCeeEEEEcCCCCEEEEE
Q 005913          503 -----------------------------------------------------------GHLSDVDCVRWHINCNYIATG  523 (670)
Q Consensus       503 -----------------------------------------------------------~~~~~v~~v~~~p~~~~l~tg  523 (670)
                                                                                 .|...+.+++|+|+|++|++|
T Consensus       387 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg  466 (611)
T 1nr0_A          387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG  466 (611)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe
Confidence                                                                       122456789999999999999


Q ss_pred             EcCCcEEEEECCCCcE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-CeeeEE--eeCCCcceEEEEEc
Q 005913          524 SSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTP--LMGHTSCVWTLAYS  598 (670)
Q Consensus       524 s~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~~~--~~~h~~~V~sl~~s  598 (670)
                      +.|++|++||+.++..  +.. .+|...|++++|+|+|++|++++.|+.|++||+.+ ++.+..  +.+|...|++++|+
T Consensus       467 s~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs  545 (611)
T 1nr0_A          467 GQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  545 (611)
T ss_dssp             ETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             CCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC
Confidence            9999999999987654  333 67999999999999999999999999999999987 665543  34599999999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC-CCCeEEEEEecCCcEEEEeeCCCC
Q 005913          599 CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       599 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      |+|++|++|+.|++|++|++..+...             .+..+..| ...|.+++|+|++. |++|+.|++
T Consensus       546 pdg~~lasgs~D~~v~lW~~~~~~~~-------------~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~  603 (611)
T 1nr0_A          546 PDNVRLATGSLDNSVIVWNMNKPSDH-------------PIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSN  603 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCTTSC-------------CEEETTSSTTSCEEEEEEEETTE-EEEEETTSC
T ss_pred             CCCCEEEEEECCCcEEEEECCCcccc-------------cchhhccCcccCeeEEEEcCCCE-EEEecCCCC
Confidence            99999999999999999999875421             11345567 78999999999999 999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-38  Score=359.38  Aligned_cols=289  Identities=34%  Similarity=0.559  Sum_probs=260.7

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (670)
                      ..+++|+..  .....++.+|...|++++|+|++++|++|+.||.|++|++..                           
T Consensus       284 ~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~---------------------------  334 (577)
T 2ymu_A          284 KTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------------------------  334 (577)
T ss_dssp             SCEEEEETT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------------------
T ss_pred             CEEEEEeCC--CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---------------------------
Confidence            456777643  334456778889999999999999999999999999999763                           


Q ss_pred             CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (670)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l  489 (670)
                        .....+.+|...|++++|+|++++|++|+.||+|++|+.. ++.+..+.+|..+|.+++|+|++.+|++++.|+.|++
T Consensus       335 --~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~  411 (577)
T 2ymu_A          335 --QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL  411 (577)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             --CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence              2345567899999999999999999999999999999964 6778889999999999999999999999999999999


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg  569 (670)
                      ||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|+|++|++++.|+
T Consensus       412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            996 56788889999999999999999999999999999999996 6788889999999999999999999999999999


Q ss_pred             eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV  649 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  649 (670)
                      .|++||. +++++..+.+|...|++++|+|+|++|++++.||.|++||...                ..+..+..|..+|
T Consensus       490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~----------------~~~~~~~~h~~~v  552 (577)
T 2ymu_A          490 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------------QLLQTLTGHSSSV  552 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS----------------CEEEEEECCSSCE
T ss_pred             EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC----------------CEEEEEcCCCCCE
Confidence            9999995 7888999999999999999999999999999999999999643                2355677899999


Q ss_pred             EEEEEecCCcEEEEeeCCCC
Q 005913          650 YSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       650 ~~l~fs~~~~~La~gs~dgs  669 (670)
                      .+++|+|+|++|++|+.|++
T Consensus       553 ~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          553 WGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSC
T ss_pred             EEEEEcCCCCEEEEEeCCCE
Confidence            99999999999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=337.41  Aligned_cols=250  Identities=21%  Similarity=0.250  Sum_probs=217.2

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      ...+..+|++++|+||+ .|++|+.||.|+|||+.+....                        ......+.+|.+.|++
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~------------------------~~~~~~~~~H~~~V~~  132 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL------------------------IVSKFCKYEHDDIVST  132 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC------------------------EEEEEEEECCSSCEEE
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce------------------------eEeeccccCCCCCEEE
Confidence            34566789999999985 6789999999999998753211                        1122345689999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEec--c
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA--G  503 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~~~--~  503 (670)
                      ++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++ .+|++|+.|++|++||++++++...+.  .
T Consensus       133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  212 (344)
T 4gqb_B          133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA  212 (344)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence            9999999999999999999999999999999999999999999999987 478999999999999999999888775  4


Q ss_pred             cCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCee
Q 005913          504 HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       504 ~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      |...+.+++|+|+ +++|++|+.||+|++||+++++++..+.+|...|++++|+|+| ++|++|+.||.|++||+.++++
T Consensus       213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            5567899999985 5788999999999999999999999999999999999999998 5899999999999999999876


Q ss_pred             eEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCc
Q 005913          582 VTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      + .+.+|.+.|++++|+|++. +|++||.||+|++|++.+..
T Consensus       293 ~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          293 F-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             E-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             E-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            5 5789999999999999886 67899999999999997743

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-38  Score=362.81  Aligned_cols=295  Identities=21%  Similarity=0.300  Sum_probs=252.8

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      .+.+++|+...+.. ..++.+|...|++++|||||++||+|+.||.|+|||+....                        
T Consensus        38 ~~~v~l~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~------------------------   92 (611)
T 1nr0_A           38 GTSVYTVPVGSLTD-TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT------------------------   92 (611)
T ss_dssp             TTEEEEEETTCSSC-CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT------------------------
T ss_pred             CCEEEEecCCCccc-CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc------------------------
Confidence            34677887654332 34577899999999999999999999999999999985311                        


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEEC
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSH  483 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~  483 (670)
                        ......+.+|.++|.+++|+|+++.|++++.+    ++|++||.  +.....+.+|...|++++|+|++. .|++|+.
T Consensus        93 --~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~  168 (611)
T 1nr0_A           93 --HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSD  168 (611)
T ss_dssp             --CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred             --ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeC
Confidence              12334677899999999999999999998865    47888874  566777889999999999999986 5999999


Q ss_pred             CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-------cCCCCeEEEEEc
Q 005913          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-------GHRSMILSLAMS  556 (670)
Q Consensus       484 dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------~h~~~I~~l~~s  556 (670)
                      |++|++||...++....+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.       +|.+.|.+++|+
T Consensus       169 D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s  248 (611)
T 1nr0_A          169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS  248 (611)
T ss_dssp             TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred             CCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence            9999999999988899999999999999999999999999999999999999999998884       799999999999


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCCeeeEE-------------------------------------------eeCCCcceE
Q 005913          557 PDGRYMASGDEDGTIMMWDLASGRCVTP-------------------------------------------LMGHTSCVW  593 (670)
Q Consensus       557 p~g~~l~sg~~dg~I~iwDl~~~~~~~~-------------------------------------------~~~h~~~V~  593 (670)
                      |+|++|++++.|+.|++||+.+++++..                                           +.+|...|+
T Consensus       249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~  328 (611)
T 1nr0_A          249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT  328 (611)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence            9999999999999999999998765433                                           347899999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc-CCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL-PTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       594 sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      +++|+|+|++|++++.||+|++||+.++...               ..+ ..|...|.+++|++++. +++++.|+
T Consensus       329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~---------------~~~~~~h~~~v~~~~~s~~~~-l~s~s~d~  388 (611)
T 1nr0_A          329 ALSSSADGKTLFSADAEGHINSWDISTGISN---------------RVFPDVHATMITGIKTTSKGD-LFTVSWDD  388 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEE---------------ECSSCSCSSCEEEEEECTTSC-EEEEETTT
T ss_pred             EEEEeCCCCEEEEEeCCCcEEEEECCCCcee---------------eecccCCcceEEEEEECCCCc-EEEEEcCC
Confidence            9999999999999999999999999876432               112 45778899999998875 56666664

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3e-38  Score=333.29  Aligned_cols=263  Identities=24%  Similarity=0.384  Sum_probs=237.2

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+..... +..++..|...|.+++|+|++++||+|+.|+.|++|++....                        
T Consensus        76 Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~------------------------  130 (340)
T 1got_B           76 DGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE------------------------  130 (340)
T ss_dssp             TTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS------------------------
T ss_pred             CCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC------------------------
Confidence            3578888755443 345667788899999999999999999999999999987421                        


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                      ........+.+|.+.|.++.|++++. +++++.|++|++||+.++..+..+.+|...|.+++|+|++.+|++|+.|++|+
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~  209 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            11234566789999999999998765 88999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEE
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~  566 (670)
                      +||++++.++..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..+  ...|++++|+|+|++|++|+
T Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  289 (340)
T 1got_B          210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999888777532  34799999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      .||.|++||+.++..+..+.+|.+.|++++|+|+|.+|++|+.||+|+|||
T Consensus       290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999999999999999999999999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-37  Score=327.82  Aligned_cols=285  Identities=19%  Similarity=0.338  Sum_probs=257.5

Q ss_pred             CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      .....+++.+|.+.|+|++|+|++++||+|+.||.|+||++.+                            ......+.+
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------------------------~~~~~~~~~   72 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----------------------------GERLGTLDG   72 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------CCEEEEECC
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------chhhhhhhh
Confidence            3455678899999999999999999999999999999999875                            235566788


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCC
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDR  494 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~  494 (670)
                      |.+.|++++|+|++++|++++.||+|++||+.+++.+..+. +..+|.+++|+|++.++++++.+     +.|++||+..
T Consensus        73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~  151 (369)
T 3zwl_B           73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER  151 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence            99999999999999999999999999999999999988888 88899999999999999999999     9999999875


Q ss_pred             Cc-----------eeEEecccCC--CeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCC
Q 005913          495 IQ-----------PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR  560 (670)
Q Consensus       495 ~~-----------~~~~~~~~~~--~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~  560 (670)
                      ..           +...+..|..  .+.+++|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  231 (369)
T 3zwl_B          152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT  231 (369)
T ss_dssp             CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC
Confidence            43           4455556666  899999999999999999999999999998 788899999999999999999999


Q ss_pred             EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC--------------cEEEEeCCCCccccc
Q 005913          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--------------TVKLWDVTTSTKVLK  626 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--------------~I~iwd~~~~~~~~~  626 (670)
                      +|++++.||.|++||+.+++.+..+. +...+.+++|+|++.++++++.++              .+++||+.++..   
T Consensus       232 ~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---  307 (369)
T 3zwl_B          232 YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE---  307 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE---
T ss_pred             EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc---
Confidence            99999999999999999999988887 778899999999999999999998              799999877643   


Q ss_pred             cccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          627 TEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                                  +..+..|..+|.+++|+|++.+|++|+.||+
T Consensus       308 ------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          308 ------------IGRVQGHFGPLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             ------------EEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ------------hhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence                        4456678899999999999999999999984

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.5e-37  Score=321.23  Aligned_cols=294  Identities=24%  Similarity=0.377  Sum_probs=250.8

Q ss_pred             EEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      .++.+|.+.|+|++|+|+ +++||+|+.||+|+|||+.....                       ........+.+|...
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-----------------------~~~~~~~~l~~h~~~   88 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-----------------------NYGIPQRALRGHSHF   88 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-----------------------CSEEEEEEECCCSSC
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-----------------------ccceeeEEEeCCCCC
Confidence            478899999999999997 68999999999999999875211                       112345678899999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEec
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIMA  502 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~-~~~~  502 (670)
                      |.+++|+|++++|++|+.|+.|++|+............+...+..+.+++++.+|++|+.|+.+++||+...... ....
T Consensus        89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~  168 (340)
T 4aow_A           89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE  168 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred             EEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec
Confidence            999999999999999999999999999999888888889999999999999999999999999999999766544 3345


Q ss_pred             ccCCCeeEEEEcCCC--CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          503 GHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      +|...+.+++|++++  .++++++.|+.|++||+++++.+..+.+|.++|++++|+|+|++|++|+.||.|++||+.+++
T Consensus       169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            788999999999765  578899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL  660 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~  660 (670)
                      ++..+..+ ..|.++.|+|++.++ +++.|+.|++||+...........      .........+...|.+++|+|+|.+
T Consensus       249 ~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          249 HLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQ------EVISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             EEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECC------C-------CCCCCEEEEEECTTSSE
T ss_pred             eeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccc------cceeeeccCCCCCEEEEEECCCCCE
Confidence            99888755 579999999987655 566799999999987654332211      1112344567889999999999999


Q ss_pred             EEEeeCCCC
Q 005913          661 FAAGALSKT  669 (670)
Q Consensus       661 La~gs~dgs  669 (670)
                      |++|+.||+
T Consensus       321 l~sgs~Dg~  329 (340)
T 4aow_A          321 LFAGYTDNL  329 (340)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEeCCCE
Confidence            999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.6e-37  Score=319.57  Aligned_cols=283  Identities=20%  Similarity=0.337  Sum_probs=250.5

Q ss_pred             eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee--ecC
Q 005913          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGH  420 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h  420 (670)
                      ......+|.+.|++++|+|++++|++|+ ||.|++|++......                         .....+  .+|
T Consensus        43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~-------------------------~~~~~~~~~~~   96 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-------------------------SPVSQLDCLNR   96 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-------------------------SCSEEEECSCT
T ss_pred             ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-------------------------eeeecccccCC
Confidence            3445568899999999999999999998 999999998752211                         112222  378


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      ...|.+++|+|++++|++++.||.|++||+.++.  ....+..|...|.+++|+|++.++++++.||.|++||+++++.+
T Consensus        97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~  176 (337)
T 1gxr_A           97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV  176 (337)
T ss_dssp             TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Confidence            9999999999999999999999999999999877  56678889999999999999999999999999999999999999


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      ..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.+|.|++||+.+
T Consensus       177 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~  255 (337)
T 1gxr_A          177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            9999999999999999999999999999999999999999888764 778899999999999999999999999999998


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      +... .+..|...|.+++|+|++++|++++.||.|++||+.++...                ....+..+|.+++|+|++
T Consensus       256 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~----------------~~~~~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          256 PDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI----------------FQSKESSSVLSCDISVDD  318 (337)
T ss_dssp             SCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----------------EEEECSSCEEEEEECTTS
T ss_pred             CCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE----------------EEecCCCcEEEEEECCCC
Confidence            8754 66789999999999999999999999999999999886532                112356789999999999


Q ss_pred             cEEEEeeCCCC
Q 005913          659 LLFAAGALSKT  669 (670)
Q Consensus       659 ~~La~gs~dgs  669 (670)
                      .+|++|+.||+
T Consensus       319 ~~l~~~~~dg~  329 (337)
T 1gxr_A          319 KYIVTGSGDKK  329 (337)
T ss_dssp             CEEEEEETTSC
T ss_pred             CEEEEecCCCe
Confidence            99999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.8e-37  Score=326.21  Aligned_cols=266  Identities=27%  Similarity=0.365  Sum_probs=237.8

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+.... .+..++..+...|.+++|+|+|.+||+|+.|+.|++|++......                      
T Consensus        85 Dg~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~----------------------  141 (354)
T 2pbi_B           85 DGKVIVWDSFTT-NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE----------------------  141 (354)
T ss_dssp             TSEEEEEETTTC-CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC----------------------
T ss_pred             CCeEEEEECCCC-CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc----------------------
Confidence            357888875443 334556677888999999999999999999999999998642110                      


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCc
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRT  486 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~  486 (670)
                      ........+.+|.+.|.+++|+|++..|++|+.|++|++||+.+++.+..+.+|...|.+++|+|  ++.+|++|+.||+
T Consensus       142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred             cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence            11234456778999999999999999999999999999999999999999999999999999988  5789999999999


Q ss_pred             EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC--CCeEEEEEcCCCCEEEE
Q 005913          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMAS  564 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~I~~l~~sp~g~~l~s  564 (670)
                      |++||+++++++..+.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..+.  ..+.+++|+|+|.+|++
T Consensus       222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999998887776443  47899999999999999


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      |+.||.|++||+.++..+..+.+|.+.|++++|+|+|++|++|+.||+|+||+
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999999999999999999999999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-37  Score=333.76  Aligned_cols=301  Identities=17%  Similarity=0.213  Sum_probs=252.2

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      ..++.+|.+.|+|++|+|  ++|++|+.||.|+||++......                      ........+.+|..+
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~h~~~   64 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE----------------------NPKDKSYSHFVHKSG   64 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC----------------------CGGGGEEEEECCTTC
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc----------------------cCCCcceEEecCCCc
Confidence            345678999999999998  89999999999999998752210                      012345667799999


Q ss_pred             EEEEEEcCC----C---CEEEEEeCCCeEEEEeCCCCce-----eEEeeCC-----CccEeEEEEe----cCCCE-EEEE
Q 005913          424 VYSASFSPL----G---DFILSSSADTTIRLWSTKLNAN-----LVCYKGH-----NYPVWDVQFN----PQGHY-FASS  481 (670)
Q Consensus       424 V~~l~~sp~----~---~~L~s~s~Dg~I~lwd~~~~~~-----~~~~~~h-----~~~V~~l~~s----p~g~~-l~s~  481 (670)
                      |++++|+|+    +   ++|++++.||.|++|++.++..     ...+..|     ...|++++|+    |++.+ |+++
T Consensus        65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  144 (397)
T 1sq9_A           65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT  144 (397)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred             EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence            999999999    9   9999999999999999998887     8888888     5899999999    99999 9999


Q ss_pred             ECCCcEEEEECCC------CceeE-----Ee-------cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE
Q 005913          482 SHDRTARIWSMDR------IQPLR-----IM-------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF  543 (670)
Q Consensus       482 s~dg~v~lwd~~~------~~~~~-----~~-------~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~  543 (670)
                      +.||.|++||+.+      ++.+.     .+       ..|...|.+++|+|++ ++++|+.||.|++||+++++.+..+
T Consensus       145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  223 (397)
T 1sq9_A          145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF  223 (397)
T ss_dssp             ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence            9999999999988      66665     66       4488999999999999 9999999999999999999999999


Q ss_pred             ec---C---CCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCCeeeEEeeC-------------CCcceEEEEEcCCC
Q 005913          544 IG---H---RSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMG-------------HTSCVWTLAYSCEG  601 (670)
Q Consensus       544 ~~---h---~~~I~~l~~sp~g~~l~sg~~d---g~I~iwDl~~~~~~~~~~~-------------h~~~V~sl~~s~~g  601 (670)
                      ..   |   ...|.+++|+|++.+|++++.|   |.|++||+.+++.+..+.+             |...|.+++|+|++
T Consensus       224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  303 (397)
T 1sq9_A          224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  303 (397)
T ss_dssp             ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence            98   8   9999999999999999999999   9999999999999999988             99999999999999


Q ss_pred             CEEEEEECCCcEEEEeCCCCcccccccccc---CC---cccccccccCCCCCCeEEEEEecCC----------cEEEEee
Q 005913          602 SLLASGSADCTVKLWDVTTSTKVLKTEEKS---GT---NRLRSLKTLPTKSTPVYSLQFSRRN----------LLFAAGA  665 (670)
Q Consensus       602 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~V~~l~fs~~~----------~~La~gs  665 (670)
                      ++|++++.||.|++||+.++..........   ..   ...........|..+|.+++|+|++          .+|++|+
T Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~  383 (397)
T 1sq9_A          304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC  383 (397)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence            999999999999999998876543322000   00   0000000112238899999999998          7999999


Q ss_pred             CCCC
Q 005913          666 LSKT  669 (670)
Q Consensus       666 ~dgs  669 (670)
                      .||+
T Consensus       384 ~dg~  387 (397)
T 1sq9_A          384 LDRS  387 (397)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            9984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.5e-37  Score=344.60  Aligned_cols=289  Identities=34%  Similarity=0.572  Sum_probs=259.7

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (670)
                      ..+++|+...  ....++.+|...|++++|+|++++|++|+.|+.|++|+...                           
T Consensus       243 ~~i~~w~~~~--~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---------------------------  293 (577)
T 2ymu_A          243 KTVKLWNRNG--QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---------------------------  293 (577)
T ss_dssp             SCEEEECTTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------------------
T ss_pred             CEEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---------------------------
Confidence            4677887543  34556778889999999999999999999999999999653                           


Q ss_pred             CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (670)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l  489 (670)
                        .....+.+|...|++++|+|++..|++++.|++|++||+. +..+..+.+|..+|++++|+|++.++++|+.|+.+++
T Consensus       294 --~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~  370 (577)
T 2ymu_A          294 --QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  370 (577)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             --cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence              2455678899999999999999999999999999999987 4566778899999999999999999999999999999


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg  569 (670)
                      |+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+
T Consensus       371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~  448 (577)
T 2ymu_A          371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK  448 (577)
T ss_dssp             EET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence            996 56788888999999999999999999999999999999995 6788889999999999999999999999999999


Q ss_pred             eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV  649 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  649 (670)
                      .|++||. +++.+..+.+|...|++++|+|++++|++++.|++|++||...                ..+..+..|..+|
T Consensus       449 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~----------------~~~~~~~~h~~~v  511 (577)
T 2ymu_A          449 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------------QLLQTLTGHSSSV  511 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS----------------CEEEEEECCSSCE
T ss_pred             EEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC----------------CEEEEEeCCCCCE
Confidence            9999996 6778888999999999999999999999999999999999643                2345667888999


Q ss_pred             EEEEEecCCcEEEEeeCCCC
Q 005913          650 YSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       650 ~~l~fs~~~~~La~gs~dgs  669 (670)
                      .+++|+|+|++||+|+.||+
T Consensus       512 ~~l~~s~dg~~l~s~~~dg~  531 (577)
T 2ymu_A          512 RGVAFSPDGQTIASASDDKT  531 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSE
T ss_pred             EEEEEcCCCCEEEEEECcCE
Confidence            99999999999999999984

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.2e-37  Score=319.07  Aligned_cols=249  Identities=23%  Similarity=0.391  Sum_probs=217.5

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+.+|.+.|++++|+|+|++||+|+.|+.|+||++...                          .......+.+|.++|+
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------~~~~~~~l~gH~~~V~   57 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW   57 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------CBCCCEEECCCSSCEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------CcEEEEEEccccCCeE
Confidence            46678899999999999999999999999999998631                          1234567889999999


Q ss_pred             EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCc--e
Q 005913          426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P  497 (670)
Q Consensus       426 ~l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~--~  497 (670)
                      +++|+++  +++|++|+.||+|++||+.++.  .+..+.+|...|.+++|+|+  +.+|++|+.|++|++||++...  .
T Consensus        58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~  137 (297)
T 2pm7_B           58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS  137 (297)
T ss_dssp             EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred             EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence            9999864  8999999999999999998764  56778889999999999997  8999999999999999998753  2


Q ss_pred             eEEecccCCCeeEEEEcCC-------------CCEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCCC-
Q 005913          498 LRIMAGHLSDVDCVRWHIN-------------CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDG-  559 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~-------------~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~g-  559 (670)
                      ...+.+|...|.+++|+|+             +++|++|+.|++|++||++++.    ....+.+|...|.+++|+|++ 
T Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~  217 (297)
T 2pm7_B          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (297)
T ss_dssp             CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC
Confidence            4667889999999999997             5799999999999999998876    667788999999999999985 


Q ss_pred             --CEEEEEECCCeEEEEeCCCCe---eeEEe--eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          560 --RYMASGDEDGTIMMWDLASGR---CVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       560 --~~l~sg~~dg~I~iwDl~~~~---~~~~~--~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                        .+|++|+.||.|++||+.++.   ....+  ..|...|++++|+|+|++|++++.||+|+||+...
T Consensus       218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence              899999999999999998643   12223  46788999999999999999999999999999764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-38  Score=341.91  Aligned_cols=315  Identities=17%  Similarity=0.297  Sum_probs=260.5

Q ss_pred             cceecCCCCCCce-eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          330 NRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       330 ~~~~l~~~~~ps~-~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ..+++|+...... .......|...|++++|+|++++||+|+.||.|++|++....                        
T Consensus        45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~------------------------  100 (416)
T 2pm9_A           45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN------------------------  100 (416)
T ss_dssp             CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT------------------------
T ss_pred             CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccc------------------------
Confidence            3567776544321 122234578899999999999999999999999999987411                        


Q ss_pred             CCccceeeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc------eeE---EeeCCCccEeEEEEecC-CCE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNA------NLV---CYKGHNYPVWDVQFNPQ-GHY  477 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~------~~~---~~~~h~~~V~~l~~sp~-g~~  477 (670)
                      ........+.+|.+.|++++|+|+ +.+|++++.||+|++||+.++.      ...   ....|...|.+++|+|+ +.+
T Consensus       101 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  180 (416)
T 2pm9_A          101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV  180 (416)
T ss_dssp             SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTE
T ss_pred             ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcE
Confidence            012255667889999999999998 8999999999999999999876      332   24678999999999998 789


Q ss_pred             EEEEECCCcEEEEECCCCceeEEeccc------CCCeeEEEEcCCC-CEEEEEEcCC---cEEEEECCCC-cEEEEEe-c
Q 005913          478 FASSSHDRTARIWSMDRIQPLRIMAGH------LSDVDCVRWHINC-NYIATGSSDK---TVRLWDVSSG-ECVRIFI-G  545 (670)
Q Consensus       478 l~s~s~dg~v~lwd~~~~~~~~~~~~~------~~~v~~v~~~p~~-~~l~tgs~dg---~I~iwd~~~~-~~~~~~~-~  545 (670)
                      |++++.||.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.|+   .|++||++++ .++..+. +
T Consensus       181 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~  260 (416)
T 2pm9_A          181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG  260 (416)
T ss_dssp             EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred             EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence            999999999999999999999888876      7889999999997 6899999998   9999999986 6777777 8


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEEEeCCCCcc
Q 005913          546 HRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       546 h~~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      |...|.+++|+| ++.+|++++.||.|++||+.+++++..+.+|...|++++|+|++ .+|++++.||.|++|++.....
T Consensus       261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            999999999999 99999999999999999999999999999999999999999998 8999999999999999988764


Q ss_pred             cccccc--------------------c-cCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          624 VLKTEE--------------------K-SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       624 ~~~~~~--------------------~-~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ......                    . ........ .....+..++.+++|+|+|++||+|+.||+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~  406 (416)
T 2pm9_A          341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKG  406 (416)
T ss_dssp             SSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSC
T ss_pred             CcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCe
Confidence            332211                    0 00000011 222336778999999999999999999885

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.7e-37  Score=354.37  Aligned_cols=300  Identities=26%  Similarity=0.407  Sum_probs=248.4

Q ss_pred             EEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      -.+.+|.+.|+|++|+|+ +++|++|+.||+|+||++.....                       ........+.+|...
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~-----------------------~~~~~~~~~~~h~~~  432 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK-----------------------AYGVAQRRLTGHSHF  432 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT-----------------------CSCEEEEEEECCSSC
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc-----------------------ccccccceecCCCCc
Confidence            356789999999999987 57999999999999999874211                       012345678899999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe--
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--  501 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~--  501 (670)
                      |.+++|+|++++|++|+.||+|++||+.++.....+.+|...|.+++|+|++.+|++|+.|++|++||+.........  
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~  512 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG  512 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998765443332  


Q ss_pred             -cccCCCeeEEEEcCCC--CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          502 -AGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       502 -~~~~~~v~~v~~~p~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                       .+|...|.|++|+|++  ..+++|+.|++|++||++++++...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+
T Consensus       513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence             3688899999999987  6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcc--c--ccccccCCCCCCeEEEEE
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR--L--RSLKTLPTKSTPVYSLQF  654 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~V~~l~f  654 (670)
                      ++++..+.. ...|.+++|+|++.+|++++ |+.|+|||+.++..............  .  ........+...+.+++|
T Consensus       593 ~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  670 (694)
T 3dm0_A          593 GKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW  670 (694)
T ss_dssp             TEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred             CceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence            998887764 46799999999998888776 56699999998765433221100000  0  000011122234789999


Q ss_pred             ecCCcEEEEeeCCCC
Q 005913          655 SRRNLLFAAGALSKT  669 (670)
Q Consensus       655 s~~~~~La~gs~dgs  669 (670)
                      +|+|.+|++|+.||+
T Consensus       671 spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          671 SADGSTLFSGYTDGV  685 (694)
T ss_dssp             CTTSSEEEEEETTSE
T ss_pred             cCCCCEEEEEcCCCe
Confidence            999999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-37  Score=332.10  Aligned_cols=289  Identities=16%  Similarity=0.293  Sum_probs=252.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      |.+.|+|++|+|++++||+|+.||.|++|+..                             ......+.+|...|++++|
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-----------------------------~~~~~~~~~~~~~v~~~~~  157 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-----------------------------GALLNVLNFHRAPIVSVKW  157 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-----------------------------SCEEEEECCCCSCEEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------------------------CCeeeeccCCCccEEEEEE
Confidence            56689999999999999999999999999943                             2345567789999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc---------------EeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---------------VWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------------V~~l~~sp~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      +|++++|++++.||.|++||+.++..+..+..+...               +.++.|+|++ .+++++.||.|++||+.+
T Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~  236 (425)
T 1r5m_A          158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE  236 (425)
T ss_dssp             CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC
T ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC
Confidence            999999999999999999999999999888888777               9999999985 588999999999999999


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw  574 (670)
                      ++++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++ ++++++.||.|++|
T Consensus       237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW  315 (425)
T ss_dssp             SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred             CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             eCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc-----cCCcccccccccCCCCC--
Q 005913          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK-----SGTNRLRSLKTLPTKST--  647 (670)
Q Consensus       575 Dl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--  647 (670)
                      |+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+..........     ........+..+..+..  
T Consensus       316 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (425)
T 1r5m_A          316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND  395 (425)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred             ECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence            99999999999999999999999999999999999999999999765421111000     00111224667777766  


Q ss_pred             CeEEEEEecCCcEEEEeeCCCC
Q 005913          648 PVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       648 ~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      +|.+++|+|++.+|++|+.||+
T Consensus       396 ~v~~~~~s~~~~~l~~~~~dg~  417 (425)
T 1r5m_A          396 YIFDLSWNCAGNKISVAYSLQE  417 (425)
T ss_dssp             CEEEEEECTTSSEEEEEESSSC
T ss_pred             ceEEEEccCCCceEEEEecCce
Confidence            9999999999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.8e-37  Score=318.84  Aligned_cols=242  Identities=22%  Similarity=0.362  Sum_probs=223.6

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      ....+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC-cEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCe
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT  570 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~  570 (670)
                      .+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.||.
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999999987 45677889999999999999 6789999999999


Q ss_pred             EEEEeCCCCeeeEEee-CCCcceEEEEEcC--CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCC
Q 005913          571 IMMWDLASGRCVTPLM-GHTSCVWTLAYSC--EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST  647 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~--~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  647 (670)
                      |++||++++.....+. +|...|..+.|+|  ++.+|++|+.||+|++||+.++.               .+..+..|..
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~---------------~~~~~~~h~~  229 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS---------------CVATLEGHMS  229 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE---------------EEEEEECCSS
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc---------------cceeeCCCCC
Confidence            9999999887766665 5668899999987  77899999999999999998754               3556778899


Q ss_pred             CeEEEEEecCCcEEEEeeCCCC
Q 005913          648 PVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       648 ~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .|.+++|+|++.+|++|+.||+
T Consensus       230 ~v~~~~~~p~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          230 NVSFAVFHPTLPIIISGSEDGT  251 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSC
T ss_pred             CEEEEEECCCCCEEEEEcCCCe
Confidence            9999999999999999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.2e-37  Score=325.02  Aligned_cols=294  Identities=18%  Similarity=0.230  Sum_probs=246.5

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      .|.++|+|++|+|++++||+|+.||.|+||++....                          ......+.+|...|++++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--------------------------~~~~~~~~~h~~~v~~~~   59 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------------------------WVQVHELKEHNGQVTGVD   59 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--------------------------EEEEEEEECCSSCEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--------------------------EEeeeeecCCCCcccEEE
Confidence            377899999999999999999999999999986411                          125566789999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEE--eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce----eEEec
Q 005913          429 FSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIMA  502 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~----~~~~~  502 (670)
                      |+|++++|++++.||.|++||+.+++....  +..|...|.+++|+|++.+|++++.|+.|++||++....    .....
T Consensus        60 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  139 (372)
T 1k8k_C           60 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK  139 (372)
T ss_dssp             EETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred             EeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence            999999999999999999999988765443  467899999999999999999999999999999988763    23336


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC------------------CCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV------------------SSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~------------------~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      +|...|.+++|+|++++|++|+.||.|++||+                  ..++++..+.+|...|.+++|+|++.+|++
T Consensus       140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  219 (372)
T 1k8k_C          140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  219 (372)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence            78899999999999999999999999999995                  467889999999999999999999999999


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC--Ccccc--ccccccC--------
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT--STKVL--KTEEKSG--------  632 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~--~~~~~--~~~~~~~--------  632 (670)
                      ++.||.|++||+.+++++..+..|...|.+++|+|++.+|++| .||.|++|++..  +.-..  .......        
T Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (372)
T 1k8k_C          220 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  298 (372)
T ss_dssp             EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             EeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence            9999999999999999999999999999999999999988887 999999999987  32000  0000000        


Q ss_pred             -------Ccccccc------ccc-CCCCCCeEEEEEe-cCC---cEEEEeeCCCC
Q 005913          633 -------TNRLRSL------KTL-PTKSTPVYSLQFS-RRN---LLFAAGALSKT  669 (670)
Q Consensus       633 -------~~~~~~~------~~~-~~~~~~V~~l~fs-~~~---~~La~gs~dgs  669 (670)
                             .......      ..+ ..|..+|.+++|+ ++|   .+|++|+.||+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~  353 (372)
T 1k8k_C          299 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG  353 (372)
T ss_dssp             HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred             hhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc
Confidence                   0000000      222 4788999999976 566   99999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=325.28  Aligned_cols=303  Identities=12%  Similarity=0.206  Sum_probs=251.0

Q ss_pred             CCceeEEEeecCCCCEEEEEEcCCCCEE-EEEeC---CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccce
Q 005913          339 LPSVSFYTFINTHNGLNCASISQDGSLV-AGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY  414 (670)
Q Consensus       339 ~ps~~~~t~~~~~~~V~~l~fs~d~~~L-a~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (670)
                      .|......+.+|.+.|++++|+|++..+ ++|+.   ||.|+||++.+..                           ...
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---------------------------~~~   58 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---------------------------LKL   58 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---------------------------EEE
T ss_pred             hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---------------------------ccc
Confidence            4556666778899999999999999655 56665   9999999987521                           122


Q ss_pred             eeeecCccCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-eeEEeeCCCccEeEEEE------ecCCCEEEEEECC
Q 005913          415 TLYQGHSGPVYSASFSPL---GDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQF------NPQGHYFASSSHD  484 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~---~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~------sp~g~~l~s~s~d  484 (670)
                      ....+|..+|++++|+|+   +.+|++|+.||.|++||+.++. .+..+.+|...|.++.|      +|++.+|++++.|
T Consensus        59 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence            233478999999999998   6999999999999999999888 88899999999999965      6789999999999


Q ss_pred             CcEEEEECCCCc-eeEEecccCC----CeeEEE----EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913          485 RTARIWSMDRIQ-PLRIMAGHLS----DVDCVR----WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (670)
Q Consensus       485 g~v~lwd~~~~~-~~~~~~~~~~----~v~~v~----~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~  555 (670)
                      |.|++||++++. ++..+..|..    .+.+++    |+|+++++++|+.||.|++||+++++.... ..|...|.+++|
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~  217 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEF  217 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEE
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEc
Confidence            999999999887 7788876655    788988    788999999999999999999999987554 578899999999


Q ss_pred             cC---CCCEEEEEECCCeEEEEeCCCCeeeEEee-----CCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCccccc
Q 005913          556 SP---DGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLK  626 (670)
Q Consensus       556 sp---~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-----~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~  626 (670)
                      +|   ++.+|++|+.||.|++||+++++.+..+.     +|...|++++|+|++. +|++|+.||.|++||+..+.....
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence            99   99999999999999999999887665554     8999999999999998 899999999999999987654322


Q ss_pred             cccc----cCCcccccccccCCCCCCeEEEEEecCCcEEE-EeeCCCC
Q 005913          627 TEEK----SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA-AGALSKT  669 (670)
Q Consensus       627 ~~~~----~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La-~gs~dgs  669 (670)
                      ....    ........+..+..|..+|.+++|+|++.+|+ +|+.||+
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~  345 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT  345 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence            1110    00112245667788999999999999999998 7998874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.5e-37  Score=327.67  Aligned_cols=251  Identities=19%  Similarity=0.243  Sum_probs=215.4

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      ...+|..+|++++|+|++.++ +|+.||.|+|||+.+.....                        .......+|.+.|+
T Consensus        89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~------------------------~~~~~~~~h~~~V~  143 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLL------------------------VNKFAKYEHDDIVK  143 (357)
T ss_dssp             EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------C------------------------CCCEEECCCSSCEE
T ss_pred             ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeE------------------------EEeeccCCCCCCEE
Confidence            456788899999999998655 56789999999987522111                        11233458999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEec--
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMA--  502 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~~~~~~--  502 (670)
                      +++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++. ++++++.||+|++||++++++...+.  
T Consensus       144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~  223 (357)
T 4g56_B          144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC  223 (357)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence            999999999999999999999999999999999999999999999999874 78999999999999999988776554  


Q ss_pred             ccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCe
Q 005913          503 GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       503 ~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      .|...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            56678999999997 5689999999999999999999999999999999999999987 579999999999999999998


Q ss_pred             eeEEeeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCc
Q 005913          581 CVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      ++..+ +|.+.|++++|+| ++.+|++|+.||+|++|++.+..
T Consensus       304 ~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          304 VFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            77654 8999999999998 79999999999999999997754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=321.86  Aligned_cols=269  Identities=21%  Similarity=0.293  Sum_probs=225.4

Q ss_pred             ccceecCCCCCCcee-EEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          329 RNRVHLSSAALPSVS-FYT-FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~-~~t-~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      ...+++|+....... ... ..+|...|++++|+|++++||+|+.|+.|+||++...                       
T Consensus        37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-----------------------   93 (345)
T 3fm0_A           37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-----------------------   93 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----------------------
T ss_pred             CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-----------------------
Confidence            356788876544322 222 3568889999999999999999999999999997641                       


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeeCCCccEeEEEEecCCCEEEEEEC
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~  483 (670)
                         .......+.+|.+.|++++|+|++++|++|+.|++|++||+....   ++..+.+|...|.+++|+|++.+|++|+.
T Consensus        94 ---~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  170 (345)
T 3fm0_A           94 ---DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY  170 (345)
T ss_dssp             ----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred             ---CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence               123456788999999999999999999999999999999998764   35667889999999999999999999999


Q ss_pred             CCcEEEEECCCCc--eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC---------------cEEEEEec-
Q 005913          484 DRTARIWSMDRIQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---------------ECVRIFIG-  545 (670)
Q Consensus       484 dg~v~lwd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~---------------~~~~~~~~-  545 (670)
                      |++|++||.+.+.  +...+.+|...|.+++|+|++++|++|+.|++|++||....               +++..+.+ 
T Consensus       171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T 3fm0_A          171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF  250 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred             CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence            9999999998775  44678899999999999999999999999999999996321               33445555 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee---------eEEeeCCCcceEEEEEcCCC-CEEEEEECCCcEEE
Q 005913          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC---------VTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKL  615 (670)
Q Consensus       546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~---------~~~~~~h~~~V~sl~~s~~g-~~l~sgs~Dg~I~i  615 (670)
                      |...|.+++|+|++..|++++.|+.|++|+...+..         .....+|...|++++|+|++ .+|++|+.||+|++
T Consensus       251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~  330 (345)
T 3fm0_A          251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF  330 (345)
T ss_dssp             CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence            888999999999999999999999999999875421         12235899999999999987 59999999999999


Q ss_pred             EeCCCCcc
Q 005913          616 WDVTTSTK  623 (670)
Q Consensus       616 wd~~~~~~  623 (670)
                      |++.....
T Consensus       331 W~~~~~~~  338 (345)
T 3fm0_A          331 WKYQRPEG  338 (345)
T ss_dssp             EEECC---
T ss_pred             EEecCCCC
Confidence            99988654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-36  Score=325.06  Aligned_cols=279  Identities=15%  Similarity=0.183  Sum_probs=233.7

Q ss_pred             EEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ..++.+|.+.|+|++|+|++ ++||+|+.||.|+||++....                          ........+|.+
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------~~~~~~~~~h~~  119 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--------------------------KTSFIQGMGPGD  119 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--------------------------CEEEECCCSTTC
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--------------------------cceeeecCCcCC
Confidence            34677888999999999999 999999999999999987521                          112222347999


Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCC---CccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913          423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       423 ~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      .|.+++|+| ++.+|++++.|++|++||+.+ ..+..+..+   ...|.+++|+|++.+|++|+.|+.|++||+ +++++
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~  197 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI  197 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence            999999999 679999999999999999995 555555544   488999999999999999999999999999 57788


Q ss_pred             EEecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCC----CcEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEE
Q 005913          499 RIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS----GECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIM  572 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~----~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~  572 (670)
                      ..+.+|...|.+++|+|+++ ++++|+.|+.|++||+++    +.++..+ +|...|.+++|+| +|.+|++++.||.|+
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            89999999999999999999 999999999999999998    6677766 7999999999999 999999999999999


Q ss_pred             EEeCCCCeeeEEeeCCC-----------------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcc
Q 005913          573 MWDLASGRCVTPLMGHT-----------------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR  635 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~-----------------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  635 (670)
                      +||++++..+..+.+|.                 +.+..++|+|++++  +|+.||.|+|||+.++...           
T Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~-----------  343 (383)
T 3ei3_B          277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV-----------  343 (383)
T ss_dssp             EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE-----------
T ss_pred             EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee-----------
Confidence            99999988777766543                 23344556666655  6778999999999886542           


Q ss_pred             cccccccCC--CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          636 LRSLKTLPT--KSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       636 ~~~~~~~~~--~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                          ..+..  +...+..++|+|++.+|++|+ ||+
T Consensus       344 ----~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          344 ----HQLRDPNAAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             ----EEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             ----eeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence                23332  456788889999999999997 653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.4e-37  Score=324.78  Aligned_cols=285  Identities=16%  Similarity=0.282  Sum_probs=243.6

Q ss_pred             eecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee--eecC
Q 005913          347 FINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL--YQGH  420 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d----~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h  420 (670)
                      ..+|.+.|+|++|+|+    ...+++++.++.|+||++......                         .....  ...|
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-------------------------~~~~~~~~~~~   68 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-------------------------RLLQSYVDADA   68 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-------------------------EEEEEEECSCT
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-------------------------EeeeeccccCC
Confidence            3468899999999984    556667777889999998752211                         11111  1237


Q ss_pred             ccCEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCC
Q 005913          421 SGPVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI  495 (670)
Q Consensus       421 ~~~V~~l~~sp~----~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~  495 (670)
                      ...|++++|+|+    +.+|++|+.||+|++||+.+++.+..+.+|..+|.+++|+| ++.+|++|+.||.|++||++++
T Consensus        69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred             CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence            788999999999    67999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             ceeEEe---cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe----------------------------
Q 005913          496 QPLRIM---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI----------------------------  544 (670)
Q Consensus       496 ~~~~~~---~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~----------------------------  544 (670)
                      +.+..+   .+|...|.+++|+|++++|++++.||.|++||+++++....+.                            
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            999888   6899999999999999999999999999999999876543333                            


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee--------------eEEeeCCCcceEEEEEcCC--CCEEEEEE
Q 005913          545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--------------VTPLMGHTSCVWTLAYSCE--GSLLASGS  608 (670)
Q Consensus       545 ~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~--------------~~~~~~h~~~V~sl~~s~~--g~~l~sgs  608 (670)
                      +|...|.+++|+  +.+|++++.||.|++||+.++..              +..+..|...|++++|+|+  +++|++|+
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence            389999999999  77999999999999999987744              7788899999999999999  99999999


Q ss_pred             CCCcEEEEeCCCCccccccccccCCcccccccccCCC--CCCeEEEEEecCCcEEEEeeCCCC
Q 005913          609 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK--STPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       609 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .||.|++||+..+....           ..+..+..+  ..+|.+++|+|++.+|++|+.||+
T Consensus       307 ~dg~i~vwd~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  358 (366)
T 3k26_A          307 QVGKLYVWDLEVEDPHK-----------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS  358 (366)
T ss_dssp             TTSCEEEEECCSSSGGG-----------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cCCcEEEEECCCCCCcc-----------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence            99999999998865321           122344455  789999999999999999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.5e-37  Score=329.55  Aligned_cols=272  Identities=24%  Similarity=0.418  Sum_probs=238.0

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+.... .+..++..|...|.+++|+|++++||+|+.|+.|+||++.....                     ..
T Consensus        87 D~~v~iWd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~---------------------~~  144 (380)
T 3iz6_a           87 DGRLIVWNALTS-QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD---------------------RD  144 (380)
T ss_dssp             TSEEEEEETTTT-EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS---------------------CC
T ss_pred             CCeEEEEECCCC-ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc---------------------cc
Confidence            457889986544 34567788889999999999999999999999999999874211                     01


Q ss_pred             CCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe-----eCCCccEeEEEEec-CCCEEEEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY-----KGHNYPVWDVQFNP-QGHYFASS  481 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~-----~~h~~~V~~l~~sp-~g~~l~s~  481 (670)
                      ........+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++..+..+     .+|...|.++.|++ ++.+|++|
T Consensus       145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg  224 (380)
T 3iz6_a          145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG  224 (380)
T ss_dssp             CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred             CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence            1123445678999999999999975 57999999999999999999988877     67999999999987 88999999


Q ss_pred             ECCCcEEEEECC-CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC-------CeEEE
Q 005913          482 SHDRTARIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSL  553 (670)
Q Consensus       482 s~dg~v~lwd~~-~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~-------~I~~l  553 (670)
                      +.|++|++||++ ...++..+.+|...|.+++|+|++++|++|+.||+|++||+++++++..+..+..       .|+++
T Consensus       225 s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  304 (380)
T 3iz6_a          225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV  304 (380)
T ss_dssp             ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred             ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence            999999999998 5578889999999999999999999999999999999999999999988865432       48999


Q ss_pred             EEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe----eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPL----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       554 ~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~----~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      +|+|+|++|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|+|.+|++|+.||+|+||++....
T Consensus       305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99999999999999999999999999888776    6799999999999999999999999999999987643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.8e-37  Score=331.27  Aligned_cols=299  Identities=25%  Similarity=0.426  Sum_probs=260.5

Q ss_pred             ccccccccCCCCCCCCCCCCCCCChHHHHHHHHHcccceecCCCCCCce-eEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005913          294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSD  372 (670)
Q Consensus       294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~ps~-~~~t~~~~~~~V~~l~fs~d~~~La~g~~d  372 (670)
                      .+..+.++.++|.+.+++|+..++|+..+.+...+.+.+++|+...... ..+.+.+|...|+|++|+|||++||+|+.|
T Consensus        89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D  168 (420)
T 4gga_A           89 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS  168 (420)
T ss_dssp             CCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC
Confidence            3455788999999999999999999877655567788999998876543 344566777889999999999999999999


Q ss_pred             CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 005913          373 SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL  452 (670)
Q Consensus       373 g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~  452 (670)
                      |.|+||++.+                            ......+.+|...|.+++|+  +..|++|+.|+.+++||...
T Consensus       169 g~v~iWd~~~----------------------------~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          169 AEVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             SCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS
T ss_pred             CeEEEEEcCC----------------------------CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc
Confidence            9999999875                            34566788999999998886  68999999999999999886


Q ss_pred             Cc-eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc----eeEEecccCCCeeEEEEcCCCC-EEEE--EE
Q 005913          453 NA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINCN-YIAT--GS  524 (670)
Q Consensus       453 ~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~----~~~~~~~~~~~v~~v~~~p~~~-~l~t--gs  524 (670)
                      .. .+..+.+|...+..+.|+|++.++++++.|+.+++|+...++    .+.....|...|.+++|+|.+. .+++  |+
T Consensus       219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs  298 (420)
T 4gga_A          219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT  298 (420)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred             cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence            54 457788999999999999999999999999999999998764    4567788999999999999764 5554  34


Q ss_pred             cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913          525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (670)
Q Consensus       525 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~--~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~  602 (670)
                      .|++|++||+.+++++..+..| ..+.++.|+|+++.+++++  .||.|+|||+.+++++..+.+|.+.|++++|+|+|+
T Consensus       299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~  377 (420)
T 4gga_A          299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA  377 (420)
T ss_dssp             TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            7999999999999999888755 5689999999999998865  789999999999999999999999999999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCcc
Q 005913          603 LLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       603 ~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +|+||+.||+|+|||+....+
T Consensus       378 ~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          378 TVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             CEEEEETTTEEEEECCSCSSC
T ss_pred             EEEEEecCCeEEEEECCCCCc
Confidence            999999999999999987543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-36  Score=308.09  Aligned_cols=275  Identities=22%  Similarity=0.318  Sum_probs=244.4

Q ss_pred             eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       342 ~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      ....++.+|.+.|+|++| +++++||+|+.||.|++|++.+                            ......+..|.
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~----------------------------~~~~~~~~~~~   59 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD----------------------------QWLGTVVYTGQ   59 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS----------------------------SEEEEEEEECS
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC----------------------------CEEEEEeecCC
Confidence            455678899999999999 9999999999999999999864                            23456677899


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      +.|.+++|+|++++|++|+.||.|++|++...   ..+..+.+|..+|.++.|  ++.++++++.||.|++||  ..+..
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~  135 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV  135 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE
Confidence            99999999999999999999999999998754   456778899999999999  577999999999999999  66788


Q ss_pred             EEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          499 RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      ..+..|...+.+++|+| +++++++++.||.|++||  .++....+.. |...|.+++|+|++. +++++.||.|++||+
T Consensus       136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~  212 (313)
T 3odt_A          136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM  212 (313)
T ss_dssp             EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEET
T ss_pred             EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEEC
Confidence            88899999999999998 999999999999999999  5667777777 899999999999998 999999999999999


Q ss_pred             CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                      ++++.+..+.+|.+.|++++|+|++ .|++++.||.|++||+.++..               +..+..+..+|.+++|+|
T Consensus       213 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~---------------~~~~~~~~~~i~~~~~~~  276 (313)
T 3odt_A          213 HTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL---------------KQVITLPAISIWSVDCMS  276 (313)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE---------------EEEEECSSSCEEEEEECT
T ss_pred             CchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce---------------eEEEeccCceEEEEEEcc
Confidence            9999999999999999999999999 599999999999999988643               345566778999999999


Q ss_pred             CCcEEEEeeCCCC
Q 005913          657 RNLLFAAGALSKT  669 (670)
Q Consensus       657 ~~~~La~gs~dgs  669 (670)
                      ++.+ ++|+.||+
T Consensus       277 ~~~~-~~~~~dg~  288 (313)
T 3odt_A          277 NGDI-IVGSSDNL  288 (313)
T ss_dssp             TSCE-EEEETTSC
T ss_pred             CCCE-EEEeCCCc
Confidence            9994 56777774

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.8e-38  Score=335.26  Aligned_cols=244  Identities=13%  Similarity=0.182  Sum_probs=208.8

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      ..+.+.|+|++|+|++++||+|+.||.|+||++....                          ......+.+|.+.|+++
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--------------------------~~~~~~~~~h~~~v~~~   61 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--------------------------WKHARTFSDHDKIVTCV   61 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------EEECCCBCCCSSCEEEE
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------eEEEEEEecCCceEEEE
Confidence            3456789999999999999999999999999987410                          13445567899999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc---eeEEe
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---PLRIM  501 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~---~~~~~  501 (670)
                      +|+|++++|++|+.||+|++||+.++.   ....+.+|...|++++|+|++.+|++|+.|+.|++||++.++   ....+
T Consensus        62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  141 (377)
T 3dwl_C           62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL  141 (377)
T ss_dssp             EECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence            999999999999999999999999877   677788899999999999999999999999999999999877   46777


Q ss_pred             cc-cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC------------------CCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913          502 AG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS------------------SGECVRIFIGHRSMILSLAMSPDGRYM  562 (670)
Q Consensus       502 ~~-~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~------------------~~~~~~~~~~h~~~I~~l~~sp~g~~l  562 (670)
                      .+ |...|.+++|+|++++|++|+.|+.|++||+.                  .++++..+ +|...|.+++|+|+|++|
T Consensus       142 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l  220 (377)
T 3dwl_C          142 KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNAL  220 (377)
T ss_dssp             CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCE
T ss_pred             ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEE
Confidence            77 99999999999999999999999999999985                  35566666 899999999999999999


Q ss_pred             EEEECCCeEEEEeCCCCee----eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          563 ASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       563 ~sg~~dg~I~iwDl~~~~~----~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      ++++.||.|++||+.++..    +..+.+|...|.+++|+|++++|++|+.++.+ +|+..
T Consensus       221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          221 AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            9999999999999999987    78889999999999999999999998766655 77665

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.4e-36  Score=313.22  Aligned_cols=260  Identities=23%  Similarity=0.411  Sum_probs=229.7

Q ss_pred             cceecCCCCC----CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913          330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (670)
Q Consensus       330 ~~~~l~~~~~----ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (670)
                      ..+++|+...    ...+..++.+|...|++++|+|++++|++|+.|++|+|||+.+                       
T Consensus        40 ~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-----------------------   96 (319)
T 3frx_A           40 KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-----------------------   96 (319)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred             ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------
Confidence            3566665321    1334567889999999999999999999999999999999875                       


Q ss_pred             CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC------CCEEE
Q 005913          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ------GHYFA  479 (670)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~------g~~l~  479 (670)
                           ......+.+|.+.|.+++|+|++.+|++|+.|++|++||++ +.++..+.+|...|.++.|+|.      +..++
T Consensus        97 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~  170 (319)
T 3frx_A           97 -----GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII  170 (319)
T ss_dssp             -----TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred             -----CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence                 33556788999999999999999999999999999999997 5677888899999999999985      45899


Q ss_pred             EEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC
Q 005913          480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (670)
Q Consensus       480 s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g  559 (670)
                      +++.|++|++||+++.+....+.+|...|.+++|+|++++|++|+.||+|++||+.+++++..+..+ ..|.+++|+|++
T Consensus       171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~  249 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR  249 (319)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS
T ss_pred             EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999888754 679999999999


Q ss_pred             CEEEEEECCCeEEEEeCCCCeeeEEeeC--------CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          560 RYMASGDEDGTIMMWDLASGRCVTPLMG--------HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       560 ~~l~sg~~dg~I~iwDl~~~~~~~~~~~--------h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      .+|++++.+ .+++|++..+..+..+..        |...+.+++|+|+|++|++|+.||+|+|||+.+
T Consensus       250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             SEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             CEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            999988765 599999998877766543        456799999999999999999999999999865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.8e-37  Score=333.64  Aligned_cols=300  Identities=18%  Similarity=0.300  Sum_probs=237.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc--------
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS--------  421 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--------  421 (670)
                      +.+.|+|++|+|+|++||+|+.||.|+||++........                 ...........+.+|.        
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------~~~~~~~~~~~~~~h~~~~~~~~~   89 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------HSRGEYNVYSTFQSHEPEFDYLKS   89 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------CCCCCEEEEEEEECCCCEEEGGGT
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------ccccceeEeccccccccccccccc
Confidence            457899999999999999999999999999875321100                 0011233566788898        


Q ss_pred             ----cCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCcee---------------------------------------
Q 005913          422 ----GPVYSASFSPLG--DFILSSSADTTIRLWSTKLNANL---------------------------------------  456 (670)
Q Consensus       422 ----~~V~~l~~sp~~--~~L~s~s~Dg~I~lwd~~~~~~~---------------------------------------  456 (670)
                          +.|++++|+|++  ..|++++.||+|++|++.++...                                       
T Consensus        90 ~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (447)
T 3dw8_B           90 LEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR  169 (447)
T ss_dssp             EEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred             ccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence                889999999998  79999999999999998764331                                       


Q ss_pred             EE-eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEE-------ecccCCCeeEEEEcCCC-CEEEEEEcC
Q 005913          457 VC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRI-------MAGHLSDVDCVRWHINC-NYIATGSSD  526 (670)
Q Consensus       457 ~~-~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~-------~~~~~~~v~~v~~~p~~-~~l~tgs~d  526 (670)
                      .. ..+|...|++++|+|++.+|++| .|++|++||+++ .+.+..       +.+|...|.+++|+|++ ++|++|+.|
T Consensus       170 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  248 (447)
T 3dw8_B          170 RIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK  248 (447)
T ss_dssp             EEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred             EEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence            12 36799999999999999999998 799999999984 444442       45899999999999998 999999999


Q ss_pred             CcEEEEECCCCcE----EEEEecCCC------------CeEEEEEcCCCCEEEEEECCCeEEEEeCCC-CeeeEEeeCCC
Q 005913          527 KTVRLWDVSSGEC----VRIFIGHRS------------MILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMGHT  589 (670)
Q Consensus       527 g~I~iwd~~~~~~----~~~~~~h~~------------~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~-~~~~~~~~~h~  589 (670)
                      |.|++||+++++.    +..+.+|..            .|.+++|+|+|++|++++. |.|++||+++ ++++..+.+|.
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred             CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence            9999999999887    788888876            8999999999999999999 9999999997 88888898886


Q ss_pred             cc---------------eEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCC----------------cc-cc
Q 005913          590 SC---------------VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT----------------NR-LR  637 (670)
Q Consensus       590 ~~---------------V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~----------------~~-~~  637 (670)
                      ..               +.+++|+|++.+|++|+.||.|++||+.++............                .. ..
T Consensus       328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (447)
T 3dw8_B          328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDE  407 (447)
T ss_dssp             GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTC
T ss_pred             cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccc
Confidence            42               334999999999999999999999999987653211110000                00 00


Q ss_pred             cccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          638 SLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       638 ~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ...........|.+++|+|++.+||+|+.++
T Consensus       408 ~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          408 ISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             EEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             ccccccccCCceeEEEECCCCCEEEEEecce
Confidence            0001123456799999999999999998875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-36  Score=317.47  Aligned_cols=270  Identities=21%  Similarity=0.380  Sum_probs=215.4

Q ss_pred             ccceecCCCCCCce-eEEEe-ec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913          329 RNRVHLSSAALPSV-SFYTF-IN-THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (670)
Q Consensus       329 ~~~~~l~~~~~ps~-~~~t~-~~-~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (670)
                      ...+++|+...... ...++ .. |.+.|++++|+|++++||+|+.|+.|+||++......                   
T Consensus        33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-------------------   93 (330)
T 2hes_X           33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-------------------   93 (330)
T ss_dssp             SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------------------
T ss_pred             CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-------------------
Confidence            35678887654432 22333 33 7889999999999999999999999999998531100                   


Q ss_pred             CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEecCCCEEEEE
Q 005913          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASS  481 (670)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~g~~l~s~  481 (670)
                        .........+.+|.+.|++++|+|++++|++|+.|++|++||+...    +++..+.+|...|.+++|+|++.+|++|
T Consensus        94 --~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~  171 (330)
T 2hes_X           94 --TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS  171 (330)
T ss_dssp             ---CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             --cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE
Confidence              0012345677899999999999999999999999999999999432    4567788999999999999999999999


Q ss_pred             ECCCcEEEEECCCC--ceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC--------cEEEEEec-CCC
Q 005913          482 SHDRTARIWSMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--------ECVRIFIG-HRS  548 (670)
Q Consensus       482 s~dg~v~lwd~~~~--~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~--------~~~~~~~~-h~~  548 (670)
                      +.|++|++||..++  +++..+.+|...|.+++|+|+  +.+|++|+.|++|++||+.++        .+...+.+ |..
T Consensus       172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~  251 (330)
T 2hes_X          172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR  251 (330)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred             cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence            99999999998766  677889999999999999998  779999999999999998764        34455554 889


Q ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe--eeEE-eeCCCc-ceEEEEEcC--CCCEEEEEECCCcEEEEeCCC
Q 005913          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVTP-LMGHTS-CVWTLAYSC--EGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~--~~~~-~~~h~~-~V~sl~~s~--~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      .|.+++|++++ +|++++.||.|++||..++.  .+.. ..+|.. .|.+++|+|  ++++|++|+.||+|+||++..
T Consensus       252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            99999999765 89999999999999998874  3333 357886 899999999  789999999999999999865

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-36  Score=325.32  Aligned_cols=289  Identities=17%  Similarity=0.248  Sum_probs=246.1

Q ss_pred             EEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCCc------cccccCCCCCCCCCCCccccCCCCCccc
Q 005913          345 YTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM----AKLGQ------QAVSSGLQGENDTTPREDIIGPNGRKRS  413 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (670)
                      +..+.|.+.|+|++|+|+++ +||+|+.||.|+||++    .....      ......                  ....
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~  100 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------------------PFAL  100 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC------------------CCCC
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc------------------cccc
Confidence            34566678999999999999 9999999999999999    54221      000000                  0000


Q ss_pred             eeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      .....+|.+.|++++|+|++++|++|+.||.|++|| .++..+..+.+|..+|.+++|+|++.+|++++.||.|++||+.
T Consensus       101 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          101 SASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             C------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             cccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence            112234788999999999999999999999999999 5678888899999999999999999999999999999999999


Q ss_pred             CCceeEEecccCCC---------------eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC
Q 005913          494 RIQPLRIMAGHLSD---------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD  558 (670)
Q Consensus       494 ~~~~~~~~~~~~~~---------------v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~  558 (670)
                      +++.+..+..+...               +.+++|+|++ .+++++.+|.|++||+.+++.+..+..|...|.+++|+|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  258 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT  258 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence            99999988887776               9999999875 5888999999999999999999999999999999999999


Q ss_pred             CCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       559 g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      +++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.||.|++||+.++..               
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~---------------  322 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL---------------  322 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE---------------
T ss_pred             CCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE---------------
Confidence            9999999999999999999999999999999999999999999 999999999999999987542               


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      +..+..+..+|.+++|+|++.+|++|+.||+
T Consensus       323 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  353 (425)
T 1r5m_A          323 LALSIVDGVPIFAGRISQDGQKYAVAFMDGQ  353 (425)
T ss_dssp             EEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence            3455567789999999999999999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-36  Score=323.07  Aligned_cols=239  Identities=30%  Similarity=0.619  Sum_probs=218.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      .|++++|+|||++||+|+.||.|+|||+.+                            ......+.+|...|++++|+|+
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~p~  176 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN----------------------------RKIVMILQGHEQDIYSLDYFPS  176 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEECTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------CcEEEEEccCCCCEEEEEEcCC
Confidence            499999999999999999999999999875                            2345667899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEe-------ccc
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-------AGH  504 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~-------~~~  504 (670)
                      +++|++|+.|++|++||+.+++....+. +...+.+++|+| ++.+|++|+.||+|++||++++..+..+       .+|
T Consensus       177 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h  255 (393)
T 1erj_A          177 GDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH  255 (393)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred             CCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC
Confidence            9999999999999999999988877776 556799999999 8999999999999999999998887766       578


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC------------CcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~------------~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~  572 (670)
                      ...|.+++|+|++++|++|+.||+|++||+++            +.+...+.+|...|.+++|+|++.+|++|+.||.|+
T Consensus       256 ~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~  335 (393)
T 1erj_A          256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  335 (393)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            99999999999999999999999999999975            345667889999999999999999999999999999


Q ss_pred             EEeCCCCeeeEEeeCCCcceEEEEEcC------CCCEEEEEECCCcEEEEeCCC
Q 005913          573 MWDLASGRCVTPLMGHTSCVWTLAYSC------EGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~~~V~sl~~s~------~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      +||+.+++++..+.+|.+.|.+++|++      ++++|++|+.||+|+||++..
T Consensus       336 iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            999999999999999999999999986      688999999999999999865

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.9e-36  Score=351.23  Aligned_cols=281  Identities=22%  Similarity=0.361  Sum_probs=255.7

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .++.+|.+.|+|++|||++++||+|+.||.|+||++.+                            ......+.+|.++|
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~----------------------------~~~~~~~~~~~~~v   58 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET----------------------------QVEVRSIQVTETPV   58 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSCE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC----------------------------CceEEEEecCCCcE
Confidence            46788899999999999999999999999999999865                            33556778999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG  503 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~  503 (670)
                      ++++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++.++++++.||+|++||++++ .....+.+
T Consensus        59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999886 67778889


Q ss_pred             cCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-CCeEEEEEcC--CCCEEEEEECCCeEEEEeCCCC
Q 005913          504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSP--DGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       504 ~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~sp--~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      |...|.+++|+| +++.|++++.||.|++||+.++.....+..+. ..+.+++|+|  ++.+|++|+.||.|++||+.++
T Consensus       139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999 88999999999999999999888877776655 8899999999  9999999999999999999999


Q ss_pred             eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913          580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  659 (670)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~  659 (670)
                      +.+..+.+|...|.+++|+|++++|++|+.||.|++||+.++..               +..+..+..+|.+++|+|++.
T Consensus       219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~  283 (814)
T 3mkq_A          219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV---------------EKTLNVGLERSWCIATHPTGR  283 (814)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE---------------EEEECCSSSSEEEEEECTTCG
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------EEEeecCCCcEEEEEEccCCC
Confidence            99999999999999999999999999999999999999987543               345556677899999999986


Q ss_pred             --EEEEeeCCC
Q 005913          660 --LFAAGALSK  668 (670)
Q Consensus       660 --~La~gs~dg  668 (670)
                        ++++|+.++
T Consensus       284 ~~~~~~~~~~~  294 (814)
T 3mkq_A          284 KNYIASGFDNG  294 (814)
T ss_dssp             GGEEEEEETTE
T ss_pred             ceEEEEEeCCC
Confidence              577776553

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-37  Score=343.34  Aligned_cols=295  Identities=10%  Similarity=0.025  Sum_probs=229.9

Q ss_pred             CCCCEEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEECCCCCccccccCCCCCCCCCCC
Q 005913          350 THNGLNCASISQDG---------SLVAG-------------------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR  401 (670)
Q Consensus       350 ~~~~V~~l~fs~d~---------~~La~-------------------g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~  401 (670)
                      +.+.|.|++|+|++         ++||+                   |+.||+|+||++......               
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~---------------  196 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH---------------  196 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC---------------
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC---------------
Confidence            56778888888775         56666                   457889999998642110               


Q ss_pred             ccccCCCCCccceeeeecCccCEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCce-----------eEEeeCCCc
Q 005913          402 EDIIGPNGRKRSYTLYQGHSGPVYSASFSPL------GDFILSSSADTTIRLWSTKLNAN-----------LVCYKGHNY  464 (670)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------~~~L~s~s~Dg~I~lwd~~~~~~-----------~~~~~~h~~  464 (670)
                               ......+.+|.+.|.+++|+|+      +.+|++|+.||+|++||+.++..           ...+.+|..
T Consensus       197 ---------~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~  267 (524)
T 2j04_B          197 ---------CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS  267 (524)
T ss_dssp             ---------EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred             ---------ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence                     0112345678899999999997      57999999999999999986642           346788999


Q ss_pred             cEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecccCCCeeEE--EEcCCC-CEEEEEEcCCcEEEEECCCCcEE
Q 005913          465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCV--RWHINC-NYIATGSSDKTVRLWDVSSGECV  540 (670)
Q Consensus       465 ~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~~~v~~v--~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~  540 (670)
                      .|++++|++++ .|++|+.||+|++||++++ .+...+.+|...|.++  +|+|++ ++|++|+.|++|++||+++++++
T Consensus       268 ~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~  346 (524)
T 2j04_B          268 LITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT  346 (524)
T ss_dssp             CEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred             CEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence            99999999864 8999999999999999876 4566788999999999  578887 89999999999999999998887


Q ss_pred             EEEecCCC--CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          541 RIFIGHRS--MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       541 ~~~~~h~~--~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      ..+.+|..  .|.+++|+|++..+++++.|+.|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||+
T Consensus       347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            77777753  5889999999999999999999999999999998889999999999999999999999999999999997


Q ss_pred             CCCcccc--------------ccccc-cCC--------------cccccccccCCCCCCeEEEEEecCCc---EEEEeeC
Q 005913          619 TTSTKVL--------------KTEEK-SGT--------------NRLRSLKTLPTKSTPVYSLQFSRRNL---LFAAGAL  666 (670)
Q Consensus       619 ~~~~~~~--------------~~~~~-~~~--------------~~~~~~~~~~~~~~~V~~l~fs~~~~---~La~gs~  666 (670)
                      .......              ..... .+.              .....+..+..|..+|.+|+|+|++.   ++|+|+.
T Consensus       427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~  506 (524)
T 2j04_B          427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS  506 (524)
T ss_dssp             CSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred             hHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence            5431110              00000 000              01123556778889999999999954   9999999


Q ss_pred             CCC
Q 005913          667 SKT  669 (670)
Q Consensus       667 dgs  669 (670)
                      +|+
T Consensus       507 ~g~  509 (524)
T 2j04_B          507 AGL  509 (524)
T ss_dssp             TSE
T ss_pred             Cce
Confidence            885

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1e-35  Score=314.18  Aligned_cols=260  Identities=25%  Similarity=0.402  Sum_probs=219.2

Q ss_pred             cceecCCCCCC------ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcc
Q 005913          330 NRVHLSSAALP------SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED  403 (670)
Q Consensus       330 ~~~~l~~~~~p------s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~  403 (670)
                      ..+++|+....      ..+..++.+|...|++++|+|++.+|++|+.|++|+|||+.+                     
T Consensus        49 ~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~---------------------  107 (343)
T 2xzm_R           49 KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT---------------------  107 (343)
T ss_dssp             SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS---------------------
T ss_pred             CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC---------------------
Confidence            46777765322      234567788999999999999999999999999999999875                     


Q ss_pred             ccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCC-----
Q 005913          404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG-----  475 (670)
Q Consensus       404 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g-----  475 (670)
                             ......+.+|.+.|++++|+|++++|++|+.|++|++||+.. .......   +|...|.+++|+|++     
T Consensus       108 -------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  179 (343)
T 2xzm_R          108 -------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANK  179 (343)
T ss_dssp             -------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred             -------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccc
Confidence                   234567889999999999999999999999999999999983 3333333   688899999999987     


Q ss_pred             -----CEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEecCCCC
Q 005913          476 -----HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSM  549 (670)
Q Consensus       476 -----~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~  549 (670)
                           .+|++++.||+|++||. .......+.+|...|.+++|+|++++|++|+.||.|++||+.+ ......+ .+...
T Consensus       180 ~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~  257 (343)
T 2xzm_R          180 VQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGST  257 (343)
T ss_dssp             CCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSC
T ss_pred             cCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCc
Confidence                 79999999999999994 4567778889999999999999999999999999999999954 4444444 35567


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE--Eee-----------CCCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT--PLM-----------GHTSCVWTLAYSCEGSLLASGSADCTVKLW  616 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~--~~~-----------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iw  616 (670)
                      |.+++|+|++.+++++ .|+.|++||+.++....  .+.           +|...|++++|+|+|++|++|+.||+|++|
T Consensus       258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF  336 (343)
T ss_dssp             EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred             EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence            9999999999888755 57789999998876543  333           688899999999999999999999999999


Q ss_pred             eCCCC
Q 005913          617 DVTTS  621 (670)
Q Consensus       617 d~~~~  621 (670)
                      ++.++
T Consensus       337 ~~~~g  341 (343)
T 2xzm_R          337 SFETS  341 (343)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            98653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.3e-35  Score=305.39  Aligned_cols=262  Identities=29%  Similarity=0.517  Sum_probs=233.1

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+..... ....+.+|...|++++|+|++++|++|+.||.|++||+..                          
T Consensus        44 dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------------------------   96 (312)
T 4ery_A           44 DKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS--------------------------   96 (312)
T ss_dssp             TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred             CCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC--------------------------
Confidence            3467777654333 3446678889999999999999999999999999999875                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                        ......+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++.+|++|+.||.|+
T Consensus        97 --~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
T 4ery_A           97 --GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  174 (312)
T ss_dssp             --CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             --CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence              234566788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEE---EEEcCCCCEEEE
Q 005913          489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS---LAMSPDGRYMAS  564 (670)
Q Consensus       489 lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~---l~~sp~g~~l~s  564 (670)
                      +||+++++.+..+. .+...+.+++|+|++++|++++.||.|++||+++++++..+.+|...+.+   ....+++.+|++
T Consensus       175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  254 (312)
T 4ery_A          175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS  254 (312)
T ss_dssp             EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred             EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence            99999988877664 56678999999999999999999999999999999999999888765433   333467899999


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCC
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVT  619 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~  619 (670)
                      |+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++  .|++|++|+.+
T Consensus       255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999999999999999999999999999999999997  69999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-36  Score=318.16  Aligned_cols=249  Identities=22%  Similarity=0.396  Sum_probs=211.6

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+....                          ......+.+|.++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--------------------------~~~~~~l~gH~~~V~   61 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--------------------------QILIADLRGHEGPVW   61 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--------------------------EEEEEEEECCSSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--------------------------cEEEEEEcCCCccEE
Confidence            456788999999999999999999999999999986411                          123456889999999


Q ss_pred             EEEEcC--CCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCce--
Q 005913          426 SASFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQP--  497 (670)
Q Consensus       426 ~l~~sp--~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~~--  497 (670)
                      +++|+|  ++++|++|+.|++|++||+.++.  ....+.+|...|.+++|+|+  +.+|++|+.|++|++||++....  
T Consensus        62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~  141 (316)
T 3bg1_A           62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE  141 (316)
T ss_dssp             EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred             EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence            999986  48899999999999999998764  56677899999999999997  88999999999999999987532  


Q ss_pred             -eEEecccCCCeeEEEEcCC-----------------CCEEEEEEcCCcEEEEECCCC---cEEEEEecCCCCeEEEEEc
Q 005913          498 -LRIMAGHLSDVDCVRWHIN-----------------CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMS  556 (670)
Q Consensus       498 -~~~~~~~~~~v~~v~~~p~-----------------~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~s  556 (670)
                       ...+.+|...|.+++|+|+                 +++|++|+.|++|++||++.+   +++..+.+|...|.+++|+
T Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s  221 (316)
T 3bg1_A          142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA  221 (316)
T ss_dssp             ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred             eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence             3455689999999999997                 478999999999999999765   4667788999999999999


Q ss_pred             CCC----CEEEEEECCCeEEEEeCCCC---e-eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          557 PDG----RYMASGDEDGTIMMWDLASG---R-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       557 p~g----~~l~sg~~dg~I~iwDl~~~---~-~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      |++    .+|++|+.||.|++||+.+.   . ....+..|...|++++|+|++++|++|+.||+|+||+...
T Consensus       222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            986    89999999999999999763   1 2334567899999999999999999999999999999754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-35  Score=321.57  Aligned_cols=280  Identities=20%  Similarity=0.291  Sum_probs=234.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..+.+..|++++++||+|+.||.|+||++..                            ......+.+|.+.|++++|+|
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~~  149 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF----------------------------NLQREIDQAHVSEITKLKFFP  149 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTS----------------------------CEEEEETTSSSSCEEEEEECT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCC----------------------------cceeeecccccCccEEEEECC
Confidence            4456667899999999999999999999864                            234455678999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc---C---
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH---L---  505 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~---~---  505 (670)
                      ++++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+|++.+|++++.||+|++||+++++.+..+..|   .   
T Consensus       150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998888753   3   


Q ss_pred             ------------------CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCC-EEEEE
Q 005913          506 ------------------SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGR-YMASG  565 (670)
Q Consensus       506 ------------------~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~-~l~sg  565 (670)
                                        ..+.+++|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|++. +|++|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence                              344455567899999999999999999999998877764 4788999999999999 99999


Q ss_pred             ECCCeEEEEeCCCCee-eEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccC
Q 005913          566 DEDGTIMMWDLASGRC-VTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP  643 (670)
Q Consensus       566 ~~dg~I~iwDl~~~~~-~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (670)
                      +.||.|++||+++++. +..+.. |...|.++.| +++++|++++.||+|++|++...........      ......+.
T Consensus       310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~------~~~~~~~~  382 (420)
T 3vl1_A          310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIE------FETPTFLV  382 (420)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEEC------TTSCEEEC
T ss_pred             eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCcccee------ccCccEEc
Confidence            9999999999998754 677776 6678888855 5788999999999999999987543211110      01122345


Q ss_pred             CCCCCeEEEEEecCCc----EEEEeeC
Q 005913          644 TKSTPVYSLQFSRRNL----LFAAGAL  666 (670)
Q Consensus       644 ~~~~~V~~l~fs~~~~----~La~gs~  666 (670)
                      .+...|.+++|+|++.    ++++|+.
T Consensus       383 ~~~~~v~~~~~s~~~~~~g~l~a~g~~  409 (420)
T 3vl1_A          383 SNDDAVSQFCYVSDDESNGEVLEVGKN  409 (420)
T ss_dssp             CSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred             cCCcceEEEEEccCCCCcceEEEEcCC
Confidence            6788999999999999    5555543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5e-36  Score=314.45  Aligned_cols=275  Identities=13%  Similarity=0.096  Sum_probs=241.1

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      ..|.+.|+|++|+|++++|++|+.||.|+||++.....                         ........+|...|+++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-------------------------~~~~~~~~~~~~~v~~~   62 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------NVDLLQSLRYKHPLLCC   62 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------EEEEEEEEECSSCEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-------------------------cccceeeeecCCceEEE
Confidence            35778899999999999999999999999999875210                         11234556899999999


Q ss_pred             EEcCCCC-EEEEEeCCCeEEEEeC-CCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCCcEEEEECCC---------
Q 005913          428 SFSPLGD-FILSSSADTTIRLWST-KLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---------  494 (670)
Q Consensus       428 ~~sp~~~-~L~s~s~Dg~I~lwd~-~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~---------  494 (670)
                      +|+|+++ +|++|+.||.|++||+ .++. ...+.+  |...|++++|+| +.++++++.|+.|++||+++         
T Consensus        63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           63 NFIDNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EECCCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence            9999999 9999999999999999 7664 477788  999999999999 99999999999999999987         


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-Cc--EEEEEecCCCCeEEEEEcC-CCCEEEEEECCCe
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GE--CVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT  570 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~--~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~  570 (670)
                      ++++..+. |...|.+++|+|++  +++++.|+.|++||+++ +.  .......|...|.+++|+| +++++++++.||.
T Consensus       141 ~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          141 NLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             ESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             CCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence            66666666 88999999999887  99999999999999998 54  3445567888999999999 9999999999999


Q ss_pred             EEEEeCCCC------eeeEEeeCCCc---------ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcc
Q 005913          571 IMMWDLASG------RCVTPLMGHTS---------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNR  635 (670)
Q Consensus       571 I~iwDl~~~------~~~~~~~~h~~---------~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  635 (670)
                      |++||+...      +.+..+..|..         .|.+++|+|++++|++|+.||.|++||+.++..            
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------  285 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK------------  285 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE------------
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH------------
Confidence            999999887      77788888865         999999999999999999999999999987643            


Q ss_pred             cccccccCCC-CCCeEEEEEecCCcEEEEeeCCCC
Q 005913          636 LRSLKTLPTK-STPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       636 ~~~~~~~~~~-~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                         +..+..+ ..+|.+++  |++.+|++|+.||+
T Consensus       286 ---~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          286 ---IKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             ---EEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ---hhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence               4556677 88999999  99999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-36  Score=326.62  Aligned_cols=304  Identities=14%  Similarity=0.240  Sum_probs=240.3

Q ss_pred             eeEEEe-ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          342 VSFYTF-INTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       342 ~~~~t~-~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      ....++ .+|.+.|+|++|+| ++++||+|+.||.|+||++......                       .........+
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-----------------------~~~~~~~~~~  109 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-----------------------EVYSSSLTYD  109 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-----------------------CCCSCSEEEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-----------------------cccceeeecc
Confidence            344556 56678999999999 9999999999999999998641000                       0001112225


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCceeEEeeC------------CCccEeEEE--EecCCCEEEEEE
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK---LNANLVCYKG------------HNYPVWDVQ--FNPQGHYFASSS  482 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~---~~~~~~~~~~------------h~~~V~~l~--~sp~g~~l~s~s  482 (670)
                      |.++|++++|+|++++|++|+.||+|++||+.   ++.......+            +...+.++.  +++++.++++|+
T Consensus       110 h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (437)
T 3gre_A          110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT  189 (437)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence            99999999999999999999999999999994   4554443332            344566666  557899999999


Q ss_pred             CCCcEEEEECCCCceeEEecc--cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcC--
Q 005913          483 HDRTARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--  557 (670)
Q Consensus       483 ~dg~v~lwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp--  557 (670)
                      .||.|++||+++++++..+.+  |...|.+++|+|++++|++|+.||.|++||+++++++..+. .|..+|.+++|+|  
T Consensus       190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  269 (437)
T 3gre_A          190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY  269 (437)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred             CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence            999999999999999999988  88999999999999999999999999999999999999886 7888999996654  


Q ss_pred             --CCCEEEEEECCCeEEEEeCCCCeeeEEeeC--------------------------CCcceEEEEEcCCCCEEEEEEC
Q 005913          558 --DGRYMASGDEDGTIMMWDLASGRCVTPLMG--------------------------HTSCVWTLAYSCEGSLLASGSA  609 (670)
Q Consensus       558 --~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~--------------------------h~~~V~sl~~s~~g~~l~sgs~  609 (670)
                        ++.+|++|+.||.|++||+.+++++..+.+                          |...|++++|+ ++++|++|+.
T Consensus       270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~  348 (437)
T 3gre_A          270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA  348 (437)
T ss_dssp             CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG
T ss_pred             CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC
Confidence              688999999999999999999998877764                          44568889999 7799999999


Q ss_pred             CCcEEEEeCCCCccccccccccC----------------------CcccccccccCCCCCCeEEEEEecC--CcEEEEee
Q 005913          610 DCTVKLWDVTTSTKVLKTEEKSG----------------------TNRLRSLKTLPTKSTPVYSLQFSRR--NLLFAAGA  665 (670)
Q Consensus       610 Dg~I~iwd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~V~~l~fs~~--~~~La~gs  665 (670)
                      ||.|++||+.++...........                      ......+.....|...|.+++|+++  +.+|++|+
T Consensus       349 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~  428 (437)
T 3gre_A          349 TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD  428 (437)
T ss_dssp             GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred             CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence            99999999998765543321100                      0001112233458889999999998  88999999


Q ss_pred             CCCC
Q 005913          666 LSKT  669 (670)
Q Consensus       666 ~dgs  669 (670)
                      .||+
T Consensus       429 ~dG~  432 (437)
T 3gre_A          429 NSGL  432 (437)
T ss_dssp             TTSC
T ss_pred             CCce
Confidence            9986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-36  Score=328.28  Aligned_cols=272  Identities=17%  Similarity=0.257  Sum_probs=233.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      +++++|+|++++|++|+.||.|++|++.....                            ...+..| ..+....|+|++
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~----------------------------~~~~~~~-~~~~~~~~~~~~  109 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG----------------------------SKMLKRA-DYTAVDTAKLQM  109 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEET----------------------------TTTSCSC-CEEEEEEECSSS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccce----------------------------eeEEecC-CceEEEEEecCC
Confidence            55789999999999999999999999875211                            1112234 445556789999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEE
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW  513 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~  513 (670)
                      ++|++|+.||.|++||+.++.....+.+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.+|...|.+++|
T Consensus       110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  189 (420)
T 3vl1_A          110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI  189 (420)
T ss_dssp             CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred             CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence            99999999999999999999888888899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEEcCCcEEEEECCCCcEEEEEec---CCCCeE---------------------EEEEcCCCCEEEEEECCC
Q 005913          514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMIL---------------------SLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       514 ~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~---------------------~l~~sp~g~~l~sg~~dg  569 (670)
                      +|++++|++|+.||.|++||+++++.+..+..   |...|.                     +++|+|+|++|++|+.||
T Consensus       190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  269 (420)
T 3vl1_A          190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG  269 (420)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred             cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence            99999999999999999999999999988875   333444                     455578999999999999


Q ss_pred             eEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC-CC
Q 005913          570 TIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT-KS  646 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  646 (670)
                      .|++||+++++.+..+. .|...|++++|+|++. +|++|+.||.|++||+.++..              .+..+.. +.
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------------~~~~~~~~~~  335 (420)
T 3vl1_A          270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--------------PVGEFLINEG  335 (420)
T ss_dssp             CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------CSEEEEESTT
T ss_pred             eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--------------chhhhhccCC
Confidence            99999999998877765 5889999999999999 999999999999999988643              1233333 56


Q ss_pred             CCeEEEEEecCCcEEEEeeCCCC
Q 005913          647 TPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       647 ~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .+|.++.| +++.+|++|+.||+
T Consensus       336 ~~v~~~~~-~~~~~l~s~~~d~~  357 (420)
T 3vl1_A          336 TPINNVYF-AAGALFVSSGFDTS  357 (420)
T ss_dssp             SCEEEEEE-ETTEEEEEETTTEE
T ss_pred             CCceEEEe-CCCCEEEEecCCcc
Confidence            67888855 57889999998874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=315.65  Aligned_cols=250  Identities=22%  Similarity=0.387  Sum_probs=221.5

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      ++.+|.+.|+|++|+|++++||+|+.||.|+||++...                          .......+.+|.+.|+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------~~~~~~~~~~h~~~v~   59 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW   59 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------cceeeeEecCCCCcEE
Confidence            56789999999999999999999999999999998631                          1235567789999999


Q ss_pred             EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCCc--e
Q 005913          426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P  497 (670)
Q Consensus       426 ~l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~~--~  497 (670)
                      +++|+++  +++|++|+.||+|++||+.++.  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++...  .
T Consensus        60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  139 (379)
T 3jrp_A           60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS  139 (379)
T ss_dssp             EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC
T ss_pred             EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee
Confidence            9999987  8999999999999999999887  67778889999999999999  9999999999999999998763  4


Q ss_pred             eEEecccCCCeeEEEEcC-------------CCCEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCC--
Q 005913          498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPD--  558 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p-------------~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~--  558 (670)
                      ...+.+|...|.+++|+|             ++++|++|+.||.|++||++++.    .+..+.+|...|.+++|+|+  
T Consensus       140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            456678999999999999             69999999999999999998764    45677889999999999999  


Q ss_pred             -CCEEEEEECCCeEEEEeCCCCe-----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       559 -g~~l~sg~~dg~I~iwDl~~~~-----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                       +.+|++++.||.|++||+.++.     .+.....|...|++++|+|++++|++++.||.|++|++...
T Consensus       220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence             8999999999999999999864     22223348899999999999999999999999999998743

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=327.86  Aligned_cols=277  Identities=20%  Similarity=0.364  Sum_probs=242.6

Q ss_pred             CCEEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913          352 NGLNCASISQDGS-LVAGG----------FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (670)
Q Consensus       352 ~~V~~l~fs~d~~-~La~g----------~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (670)
                      ..|.|++|+|+++ +||+|          +.||.|+||++......                          .......|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~   66 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------------KPIASLQV   66 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------------SCSCCCCC
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------------cEEEEEec
Confidence            3688999999987 99999          89999999998752210                          01112358


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~  495 (670)
                      ...|++++|+|++.+|++|+.||.|++|++.+    ...+..+.+|..+|++++|+|+ +.+|++++.||.|++||+.++
T Consensus        67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            89999999999999999999999999999987    4578888999999999999998 899999999999999999887


Q ss_pred             c------eeE---EecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecC------CCCeEEEEEcCCC
Q 005913          496 Q------PLR---IMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------RSMILSLAMSPDG  559 (670)
Q Consensus       496 ~------~~~---~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h------~~~I~~l~~sp~g  559 (670)
                      +      ...   ....|...|.+++|+|+ +++|++++.||.|++||+++++.+..+..+      ...|.+++|+|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN  226 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence            6      332   23578899999999999 789999999999999999999999988876      7889999999997


Q ss_pred             -CEEEEEECCC---eEEEEeCCCC-eeeEEee-CCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccC
Q 005913          560 -RYMASGDEDG---TIMMWDLASG-RCVTPLM-GHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG  632 (670)
Q Consensus       560 -~~l~sg~~dg---~I~iwDl~~~-~~~~~~~-~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  632 (670)
                       .++++++.|+   .|++||++++ .++..+. +|...|++++|+| ++.+|++++.||+|++||+.++..         
T Consensus       227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~---------  297 (416)
T 2pm9_A          227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ---------  297 (416)
T ss_dssp             TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE---------
T ss_pred             CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc---------
Confidence             6999999998   9999999986 6777787 8999999999999 999999999999999999987643         


Q ss_pred             CcccccccccCCCCCCeEEEEEecCC-cEEEEeeCCCC
Q 005913          633 TNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGALSKT  669 (670)
Q Consensus       633 ~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~gs~dgs  669 (670)
                            +..+..|..+|.+++|+|++ .+|++|+.||+
T Consensus       298 ------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          298 ------LSQFPARGNWCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             ------EEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred             ------ceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence                  45566788899999999999 89999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-35  Score=305.28  Aligned_cols=245  Identities=22%  Similarity=0.331  Sum_probs=211.9

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~--~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw  490 (670)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|+||++..  .+.+..+.+|..+|++++|++  ++.+|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45678999999999999999999999999999999974  356788999999999999986  48999999999999999


Q ss_pred             ECCCCc--eeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCC------
Q 005913          491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPD------  558 (670)
Q Consensus       491 d~~~~~--~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~------  558 (670)
                      |+++++  .+..+.+|...|.+++|+|+  +.+|++|+.|+.|++||++++.  ....+.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998763  56778889999999999997  8999999999999999998763  24567899999999999997      


Q ss_pred             -------CCEEEEEECCCeEEEEeCCCCe----eeEEeeCCCcceEEEEEcCCC---CEEEEEECCCcEEEEeCCCCccc
Q 005913          559 -------GRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEG---SLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       559 -------g~~l~sg~~dg~I~iwDl~~~~----~~~~~~~h~~~V~sl~~s~~g---~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                             +++|++|+.||.|++||++++.    ....+.+|...|.+++|+|++   .+|++|+.|++|+|||+......
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   5799999999999999998765    567788999999999999984   89999999999999998764311


Q ss_pred             cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ..          ..+.....+...|.+++|+|+|.+||+|+.||+
T Consensus       243 ~~----------~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~  277 (297)
T 2pm7_B          243 WK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (297)
T ss_dssp             CE----------EEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             cc----------eeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence            00          001112356778999999999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.1e-36  Score=329.00  Aligned_cols=280  Identities=20%  Similarity=0.250  Sum_probs=228.6

Q ss_pred             EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      +...|...|+|++|+| ++++||+|+.||.|+|||+....                          ......+.+|.+.|
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--------------------------~~~~~~~~gH~~~V  167 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--------------------------KPTFIKGIGAGGSI  167 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--------------------------CCEEECCCSSSCCC
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--------------------------ceeEEEccCCCCCE
Confidence            4566788899999999 57899999999999999987421                          12334567899999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       425 ~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      ++++|+| ++.+|++|+.||+|++||+++.........  +...+.+++|+|++.+|++|+.||.|++||++. +.+..+
T Consensus       168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~  246 (435)
T 4e54_B          168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL  246 (435)
T ss_dssp             CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence            9999998 688999999999999999986654444333  344678999999999999999999999999975 567778


Q ss_pred             cccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEE---EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q 005913          502 AGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~---~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~  577 (670)
                      .+|...|.+++|+|++. ++++|+.|+.|++||+++++....   ..+|...|++++|+|+|.+|++|+.||.|++||+.
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            89999999999999886 788999999999999988765433   35789999999999999999999999999999999


Q ss_pred             CCeeeEEeeCCCc------ceEEEEEcCCCCEEEEEEC------------CCcEEEEeCCCCccccccccccCCcccccc
Q 005913          578 SGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSA------------DCTVKLWDVTTSTKVLKTEEKSGTNRLRSL  639 (670)
Q Consensus       578 ~~~~~~~~~~h~~------~V~sl~~s~~g~~l~sgs~------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  639 (670)
                      ++.....+..|..      .+..+.|+|++.++++++.            ++.|++||..++....              
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~--------------  392 (435)
T 4e54_B          327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC--------------  392 (435)
T ss_dssp             SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE--------------
T ss_pred             CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE--------------
Confidence            9988877766643      2445678888887777653            3579999998865321              


Q ss_pred             cccCCCCCCeEEE-EEecCCcEEEEeeC
Q 005913          640 KTLPTKSTPVYSL-QFSRRNLLFAAGAL  666 (670)
Q Consensus       640 ~~~~~~~~~V~~l-~fs~~~~~La~gs~  666 (670)
                      .....+...|.++ +|+|+|.+||+|+.
T Consensus       393 ~l~~~~~~~v~s~~~fspdg~~lasg~d  420 (435)
T 4e54_B          393 QLYDPESSGISSLNEFNPMGDTLASAMG  420 (435)
T ss_dssp             EECCSSCCCCCCEEEECTTSSCEEEECS
T ss_pred             EEeCCCCCcEEEEEEECCCCCEEEEEcC
Confidence            1233567778887 69999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.9e-35  Score=308.54  Aligned_cols=274  Identities=19%  Similarity=0.281  Sum_probs=239.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      +.++|.+++|+|||++++++..++.+.+|....                            ........+|...|++++|
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~h~~~v~~~~~   59 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR----------------------------HARQINTLNHGEVVCAVTI   59 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS----------------------------EEEEEEEECCSSCCCEEEE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCC----------------------------ccccceeccCCCceEEEEE
Confidence            345799999999999999988777665554321                            1223344589999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCce---eEEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc--eeEEec
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNAN---LVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRIMA  502 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~--~~~~~~  502 (670)
                      +|++++|++++ ||.|++|++.++..   ...+.  +|..+|.+++|+|++.++++++.||.|++||+++++  ....+.
T Consensus        60 ~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  138 (337)
T 1gxr_A           60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT  138 (337)
T ss_dssp             CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred             ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence            99999999999 99999999987653   33333  789999999999999999999999999999999877  566778


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                      .|...|.+++|+|+++++++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+
T Consensus       139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEE
Q 005913          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA  662 (670)
Q Consensus       583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La  662 (670)
                      ..+. |...+.+++|+|++++|++++.||.|++||+.....                ..+..+..+|.+++|+|++.+|+
T Consensus       219 ~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~l~  281 (337)
T 1gxr_A          219 QQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----------------YQLHLHESCVLSLKFAYCGKWFV  281 (337)
T ss_dssp             EEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE----------------EEECCCSSCEEEEEECTTSSEEE
T ss_pred             eeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe----------------EEEcCCccceeEEEECCCCCEEE
Confidence            7764 778899999999999999999999999999987532                24456788999999999999999


Q ss_pred             EeeCCCC
Q 005913          663 AGALSKT  669 (670)
Q Consensus       663 ~gs~dgs  669 (670)
                      +|+.||+
T Consensus       282 ~~~~dg~  288 (337)
T 1gxr_A          282 STGKDNL  288 (337)
T ss_dssp             EEETTSE
T ss_pred             EecCCCc
Confidence            9999874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.9e-35  Score=307.23  Aligned_cols=253  Identities=22%  Similarity=0.384  Sum_probs=224.1

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +.+|.+.|+|++|+|++++||+|+.||.|+||++.....                        .......+.+|.+.|++
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------~~~~~~~~~~~~~~v~~   62 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------NWELSDSWRAHDSSIVA   62 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------CEEEEEEEECCSSCEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------cceecceeccCCCcEEE
Confidence            467889999999999999999999999999999875211                        12345667899999999


Q ss_pred             EEEcC--CCCEEEEEeCCCeEEEEeCCCC---------ceeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECC
Q 005913          427 ASFSP--LGDFILSSSADTTIRLWSTKLN---------ANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       427 l~~sp--~~~~L~s~s~Dg~I~lwd~~~~---------~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~  493 (670)
                      ++|+|  ++++|++|+.||+|++||+.++         ..+..+.+|..+|.+++|+|+  +.+|++++.||.|++||++
T Consensus        63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~  142 (351)
T 3f3f_A           63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL  142 (351)
T ss_dssp             EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred             EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence            99999  6999999999999999999876         457778899999999999999  9999999999999999998


Q ss_pred             CCceeEEec-------------ccCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcE--EEEEecCCCCeEEEEE
Q 005913          494 RIQPLRIMA-------------GHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAM  555 (670)
Q Consensus       494 ~~~~~~~~~-------------~~~~~v~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~--~~~~~~h~~~I~~l~~  555 (670)
                      +++.+..+.             .|...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+.+|...|++++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  222 (351)
T 3f3f_A          143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW  222 (351)
T ss_dssp             STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred             ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence            876543332             67788999999997   99999999999999998887765  6777889999999999


Q ss_pred             cCCC----CEEEEEECCCeEEEEeCCCC----------------------------------------------eeeEEe
Q 005913          556 SPDG----RYMASGDEDGTIMMWDLASG----------------------------------------------RCVTPL  585 (670)
Q Consensus       556 sp~g----~~l~sg~~dg~I~iwDl~~~----------------------------------------------~~~~~~  585 (670)
                      +|++    .+|++|+.||.|++||++++                                              +.+..+
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH  302 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence            9998    89999999999999999875                                              567778


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      .+|...|++++|+|++++|++|+.||.|+||++..+..
T Consensus       303 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence            89999999999999999999999999999999987653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-34  Score=317.05  Aligned_cols=283  Identities=25%  Similarity=0.436  Sum_probs=246.5

Q ss_pred             cCCCCCCceeEEEeecCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCcc
Q 005913          334 LSSAALPSVSFYTFINTHNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR  412 (670)
Q Consensus       334 l~~~~~ps~~~~t~~~~~~~-V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (670)
                      .|.......+..++.+|.+. ++|+.|  ++++|++|+.||.|++||+.+                            ..
T Consensus       104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~----------------------------~~  153 (464)
T 3v7d_B          104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------KK  153 (464)
T ss_dssp             HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------------------------TE
T ss_pred             hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC----------------------------Cc
Confidence            44444444556678888877 577766  567999999999999999875                            33


Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw  490 (670)
                      ....+.+|.+.|++++|+|++ .|++|+.||+|++||+.++..+..+.+|..+|.+++|++  ++.++++|+.||+|++|
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            556678999999999999988 999999999999999999999999999999999999994  77899999999999999


Q ss_pred             ECCCCce-----------------------eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC
Q 005913          491 SMDRIQP-----------------------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR  547 (670)
Q Consensus       491 d~~~~~~-----------------------~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~  547 (670)
                      |+.+...                       +..+.+|...|.++  +++++++++|+.||.|++||+++++++..+.+|.
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            9987653                       45677888888887  5788999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      ..|.+++|+|++++|++|+.||.|++||+.+++++..+.+|...|.+++|+  +.+|++|+.||+|++||+.+.....  
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~--  386 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--  386 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE--
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee--
Confidence            999999999999999999999999999999999999999999999999997  5799999999999999998754321  


Q ss_pred             ccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          628 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                                   .. .+...+..++|++++.++++|+ ||
T Consensus       387 -------------~~-~~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          387 -------------SY-HHTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             -------------EE-ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             -------------ee-cCCCCccEEEEEeCCCEEEEec-CC
Confidence                         11 2455688899999999999998 55

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-35  Score=316.91  Aligned_cols=296  Identities=23%  Similarity=0.350  Sum_probs=247.1

Q ss_pred             ccccCCCCCCCCCCCCCCCChHHHHHHHHHcccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005913          298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKV  377 (670)
Q Consensus       298 ~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~I  377 (670)
                      +..+..+|....+++...+.+.....+.......+++|+.............|.+.|++++|+|++++|++|+.||.|+|
T Consensus        81 p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  160 (401)
T 4aez_A           81 PERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI  160 (401)
T ss_dssp             CSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence            44455555555555555555544332333456689999887666555444557889999999999999999999999999


Q ss_pred             EECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCcee
Q 005913          378 WDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANL  456 (670)
Q Consensus       378 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~-~~~~~  456 (670)
                      |++.+                            ......+.+|.+.|.+++|+  +++|++|+.||.|++||+. ....+
T Consensus       161 wd~~~----------------------------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~  210 (401)
T 4aez_A          161 YDVES----------------------------QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQI  210 (401)
T ss_dssp             EETTT----------------------------CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             EECcC----------------------------CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCccee
Confidence            99875                            23456677899999999995  6899999999999999999 45667


Q ss_pred             EEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC-EEEEEE--cCCcEEEEE
Q 005913          457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-YIATGS--SDKTVRLWD  533 (670)
Q Consensus       457 ~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~tgs--~dg~I~iwd  533 (670)
                      ..+.+|...|.+++|+|++.+|++|+.||.|++||+++++++..+.+|...|.+++|+|++. ++++|+  .|+.|++||
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d  290 (401)
T 4aez_A          211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN  290 (401)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred             eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence            88899999999999999999999999999999999999999999999999999999999764 555554  699999999


Q ss_pred             CCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCCeeeE--EeeCCCcceEEEEEcCCCCEEEEEEC
Q 005913          534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSA  609 (670)
Q Consensus       534 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~--~dg~I~iwDl~~~~~~~--~~~~h~~~V~sl~~s~~g~~l~sgs~  609 (670)
                      +.+++++..+. +...|.+++|+|+++++++++  .||.|++||+.++....  .+.+|.+.|.+++|+|+|.+|++++.
T Consensus       291 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          291 AATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             CCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            99999998885 667899999999999999954  89999999999876544  46789999999999999999999999


Q ss_pred             CCcEEEEeCCCCccc
Q 005913          610 DCTVKLWDVTTSTKV  624 (670)
Q Consensus       610 Dg~I~iwd~~~~~~~  624 (670)
                      ||.|++|++.++...
T Consensus       370 dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          370 DENLKFWRVYDGDHV  384 (401)
T ss_dssp             TSEEEEEECCC----
T ss_pred             CCcEEEEECCCCccc
Confidence            999999999887643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9e-35  Score=313.69  Aligned_cols=278  Identities=21%  Similarity=0.281  Sum_probs=238.7

Q ss_pred             EeecCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ecCcc
Q 005913          346 TFINTHNG--LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QGHSG  422 (670)
Q Consensus       346 t~~~~~~~--V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~  422 (670)
                      ...++...  +.+++|++  ..+++++.||.|++|++.+..                            ....+ ..|..
T Consensus        86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~----------------------------~~~~~~~~~~~  135 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS----------------------------VSALAETDEST  135 (401)
T ss_dssp             ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC----------------------------EEEEEECCTTC
T ss_pred             eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc----------------------------EeEeeecCCCC
Confidence            33345444  55677775  457778899999999987521                            22222 23889


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEe
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIM  501 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~-~~~~~~~~  501 (670)
                      .|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+  +.++++|+.||.|++||++ ....+..+
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~  213 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTL  213 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEE
Confidence            99999999999999999999999999999999999999999999999994  6799999999999999998 56678888


Q ss_pred             cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEE--CCCeEEEEeCCC
Q 005913          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLAS  578 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~-~l~sg~--~dg~I~iwDl~~  578 (670)
                      .+|...|.+++|+|++++|++|+.||.|++||+++++++..+..|...|.+++|+|++. ++++|+  .||.|++||+.+
T Consensus       214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~  293 (401)
T 4aez_A          214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT  293 (401)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999765 556654  799999999999


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                      ++++..+. |...|.+++|+|++++|++++  .||.|++||+.++...             ....+..|..+|.+++|+|
T Consensus       294 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-------------~~~~~~~h~~~v~~~~~s~  359 (401)
T 4aez_A          294 GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-------------KQVDIPAHDTRVLYSALSP  359 (401)
T ss_dssp             CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-------------EEEEEECCSSCCCEEEECT
T ss_pred             CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-------------eEEEecCCCCCEEEEEECC
Confidence            99988886 667899999999999999954  8999999998775321             2334567888999999999


Q ss_pred             CCcEEEEeeCCCC
Q 005913          657 RNLLFAAGALSKT  669 (670)
Q Consensus       657 ~~~~La~gs~dgs  669 (670)
                      +|.+|++|+.||+
T Consensus       360 dg~~l~s~~~dg~  372 (401)
T 4aez_A          360 DGRILSTAASDEN  372 (401)
T ss_dssp             TSSEEEEECTTSE
T ss_pred             CCCEEEEEeCCCc
Confidence            9999999999984

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.9e-35  Score=360.18  Aligned_cols=253  Identities=25%  Similarity=0.389  Sum_probs=232.6

Q ss_pred             CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      ......++.+|.+.|+|++|||||++||+|+.||.|+||++.+                            ......+.+
T Consensus       604 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----------------------------~~~~~~~~~  655 (1249)
T 3sfz_A          604 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET----------------------------GEKLLDIKA  655 (1249)
T ss_dssp             SCCCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECC
T ss_pred             cccceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEecc
Confidence            3444567788999999999999999999999999999999875                            234566779


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEEECCCCce
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      |.+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|  ++.++++|+.||.|++||+++++.
T Consensus       656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC  735 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence            999999999999999999999999999999999999999999999999999999  566899999999999999999999


Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE----------------------------------
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF----------------------------------  543 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~----------------------------------  543 (670)
                      +..+.+|...|.+++|+|+++++++|+.||.|++||+.+++....+                                  
T Consensus       736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  815 (1249)
T 3sfz_A          736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV  815 (1249)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred             hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence            9999999999999999999999999999999999999876544332                                  


Q ss_pred             ---------------------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913          544 ---------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (670)
Q Consensus       544 ---------------------~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~  602 (670)
                                           .+|...|.+++|+|++.++++++.||.|++||+.++..+..+.+|.+.|++++|+|+|+
T Consensus       816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~  895 (1249)
T 3sfz_A          816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS  895 (1249)
T ss_dssp             EETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             EcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCC
Confidence                                 16778899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCcEEEEeCCC
Q 005913          603 LLASGSADCTVKLWDVTT  620 (670)
Q Consensus       603 ~l~sgs~Dg~I~iwd~~~  620 (670)
                      +|++++.||+|++|++..
T Consensus       896 ~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          896 SFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEEEETTSCEEEEEHHH
T ss_pred             EEEEEeCCCeEEEEEccc
Confidence            999999999999999653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.9e-35  Score=311.73  Aligned_cols=269  Identities=16%  Similarity=0.258  Sum_probs=235.2

Q ss_pred             ccceecCCCCCCc-----eeEEEeecCCCCEEEEEEcCC----C---CEEEEEeCCCcEEEEECCCCCccccccCCCCCC
Q 005913          329 RNRVHLSSAALPS-----VSFYTFINTHNGLNCASISQD----G---SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN  396 (670)
Q Consensus       329 ~~~~~l~~~~~ps-----~~~~t~~~~~~~V~~l~fs~d----~---~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~  396 (670)
                      ...+++|+.....     ....++..|...|++++|+|+    +   ++|++|+.||.|++|++......          
T Consensus        35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~----------  104 (397)
T 1sq9_A           35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET----------  104 (397)
T ss_dssp             TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT----------
T ss_pred             CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc----------
Confidence            3467788665443     345677789999999999999    9   99999999999999998752110          


Q ss_pred             CCCCCccccCCCCCccceeeeecC-----ccCEEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CceeE---
Q 005913          397 DTTPREDIIGPNGRKRSYTLYQGH-----SGPVYSASFS----PLGDF-ILSSSADTTIRLWSTKL------NANLV---  457 (670)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~s----p~~~~-L~s~s~Dg~I~lwd~~~------~~~~~---  457 (670)
                                   .......+.+|     ...|.+++|+    |++++ |++|+.||.|++||+.+      +..+.   
T Consensus       105 -------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  171 (397)
T 1sq9_A          105 -------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  171 (397)
T ss_dssp             -------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             -------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence                         01125566677     5999999999    99999 99999999999999998      66665   


Q ss_pred             --Ee-------eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc---c---CCCeeEEEEcCCCCEEEE
Q 005913          458 --CY-------KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---H---LSDVDCVRWHINCNYIAT  522 (670)
Q Consensus       458 --~~-------~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~---~---~~~v~~v~~~p~~~~l~t  522 (670)
                        .+       ..|...|.+++|+|++ ++++++.||.|++||+++++++..+..   |   ...|.+++|+|++++|++
T Consensus       172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~  250 (397)
T 1sq9_A          172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  250 (397)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence              66       4488999999999999 999999999999999999999999998   8   999999999999999999


Q ss_pred             EEcC---CcEEEEECCCCcEEEEEec-------------CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          523 GSSD---KTVRLWDVSSGECVRIFIG-------------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       523 gs~d---g~I~iwd~~~~~~~~~~~~-------------h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      ++.|   |.|++||+++++.+..+.+             |...|.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999   9999999999999999998             99999999999999999999999999999999999999999


Q ss_pred             ------CC---------------CcceEEEEEcCCC----------CEEEEEECCCcEEEEeCCCC
Q 005913          587 ------GH---------------TSCVWTLAYSCEG----------SLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       587 ------~h---------------~~~V~sl~~s~~g----------~~l~sgs~Dg~I~iwd~~~~  621 (670)
                            +|               ...|++++|+|++          ++|++|+.||.|++|++.++
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                  88               9999999999998          79999999999999998764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.3e-34  Score=301.81  Aligned_cols=285  Identities=19%  Similarity=0.312  Sum_probs=240.1

Q ss_pred             CceeEEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee
Q 005913          340 PSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL  416 (670)
Q Consensus       340 ps~~~~t~~~~~~~V~~l~fs~d---~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (670)
                      |......+.+|.+.|+|++|+|+   |++||+|+.||.|+||++....                          ......
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--------------------------~~~~~~   81 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--------------------------QTIPKA   81 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------CEEEEE
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------ceeEEE
Confidence            34445567788999999999999   6999999999999999987411                          123366


Q ss_pred             eecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEE--ecCCCEEEEEECCCcEEEEECCC
Q 005913          417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--NPQGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~--sp~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      +.+|.+.|++++|+|++++|++|+.||+|++||+.++..+. ..+|..+|++++|  +|++.+|++++.||.|++||+++
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            78899999999999999999999999999999999887665 5669999999999  88999999999999999999999


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCE----EEEEECC
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRY----MASGDED  568 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~----l~sg~~d  568 (670)
                      ++++..+..+. .+.++.+.  +..+++++.++.+++||++.........  .+...+.++++.+++..    +++++.|
T Consensus       161 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  237 (368)
T 3mmy_A          161 SNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE  237 (368)
T ss_dssp             SSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence            99999888664 56666665  4588999999999999998765543322  34456677777665554    9999999


Q ss_pred             CeEEEEeCCCC---eeeEEeeCCCc------------ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCC
Q 005913          569 GTIMMWDLASG---RCVTPLMGHTS------------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT  633 (670)
Q Consensus       569 g~I~iwDl~~~---~~~~~~~~h~~------------~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~  633 (670)
                      |.|++||+...   ..+..+.+|..            .|++++|+|++++|++|+.||.|++||+.++.           
T Consensus       238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-----------  306 (368)
T 3mmy_A          238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART-----------  306 (368)
T ss_dssp             SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-----------
T ss_pred             CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-----------
Confidence            99999999987   56777788876            79999999999999999999999999998764           


Q ss_pred             cccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       634 ~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                          .+..+..+..+|.+++|+|+|.+|++|+.|+.
T Consensus       307 ----~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          307 ----KLKTSEQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             ----EEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             ----EEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence                34566788899999999999999999998863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=297.35  Aligned_cols=297  Identities=24%  Similarity=0.419  Sum_probs=253.1

Q ss_pred             ccccccccCCCCCCCCCCCCCCCChHHHHHHHHHcccceecCCCCCCc-eeEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005913          294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSD  372 (670)
Q Consensus       294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~ps-~~~~t~~~~~~~V~~l~fs~d~~~La~g~~d  372 (670)
                      .|..|.++.++|.+.+++++..++|+..+.+.....+.+++|+..... ...+.+.+|...|+|++|+|++++||+|+.|
T Consensus         9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D   88 (318)
T 4ggc_A            9 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS   88 (318)
T ss_dssp             CCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC
Confidence            456678899999999999988888876654444567889999876543 3445566778889999999999999999999


Q ss_pred             CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 005913          373 SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL  452 (670)
Q Consensus       373 g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~  452 (670)
                      |.|+||++.+                            ......+.+|...+.++.+.  +..+++++.++.+++|+...
T Consensus        89 g~v~iw~~~~----------------------------~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~  138 (318)
T 4ggc_A           89 AEVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV  138 (318)
T ss_dssp             SEEEEEETTT----------------------------TEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS
T ss_pred             CcEEEeecCC----------------------------ceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCC
Confidence            9999999875                            34566778999998876665  78999999999999999887


Q ss_pred             Cc-eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCc----eeEEecccCCCeeEEEEcCCCCEE---EEEE
Q 005913          453 NA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINCNYI---ATGS  524 (670)
Q Consensus       453 ~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~----~~~~~~~~~~~v~~v~~~p~~~~l---~tgs  524 (670)
                      .. .+..+.+|...+..+.+++++.++++++.||+|++||+.+++    .......+.+.|.+++++|.+..+   ++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  218 (318)
T 4ggc_A          139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT  218 (318)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred             CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC
Confidence            64 456788999999999999999999999999999999998765    345566788899999999977543   3566


Q ss_pred             cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913          525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (670)
Q Consensus       525 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~--~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~  602 (670)
                      .+++|++||...+...... .+...+..+.|+|++..+++++  .||.|++||+.+++++..+.+|.+.|++++|+|+|+
T Consensus       219 ~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~  297 (318)
T 4ggc_A          219 SDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA  297 (318)
T ss_dssp             TTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            7899999999998887665 4667899999999999888765  799999999999999999999999999999999999


Q ss_pred             EEEEEECCCcEEEEeCCCC
Q 005913          603 LLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       603 ~l~sgs~Dg~I~iwd~~~~  621 (670)
                      +|+||+.||+|+|||+...
T Consensus       298 ~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          298 TVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CEEEEETTTEEEEECCSCC
T ss_pred             EEEEEecCCeEEEEECCCC
Confidence            9999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.9e-33  Score=308.74  Aligned_cols=289  Identities=21%  Similarity=0.399  Sum_probs=248.7

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+..... +..++.+|.+.|++++|+|++ +|++|+.||.|++||+.+                          
T Consensus       141 dg~i~vwd~~~~~-~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--------------------------  192 (464)
T 3v7d_B          141 DKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--------------------------  192 (464)
T ss_dssp             TSCEEEEETTTTE-EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--------------------------
T ss_pred             CCcEEEEECCCCc-EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--------------------------
Confidence            3567888765443 456677899999999999988 999999999999999875                          


Q ss_pred             CCccceeeeecCccCEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCce-----------------------eEEeeCCC
Q 005913          409 GRKRSYTLYQGHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLNAN-----------------------LVCYKGHN  463 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~s--p~~~~L~s~s~Dg~I~lwd~~~~~~-----------------------~~~~~~h~  463 (670)
                        ......+.+|.+.|.+++|+  +++.+|++|+.||+|++||+.+...                       +..+.+|.
T Consensus       193 --~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          193 --GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             --TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             --CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence              23456678899999999998  5778999999999999999987653                       45677888


Q ss_pred             ccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE
Q 005913          464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF  543 (670)
Q Consensus       464 ~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~  543 (670)
                      ..|.++  ++++.++++|+.||.|++||+.+++++..+.+|...|.+++|+|+++++++|+.||.|++||+++++++..+
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            888776  678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       544 ~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      .+|...|.+++|+  +.+|++|+.||.|++||+.++....... |...+..++|++++.+|++|+ ||.|++||+.++..
T Consensus       349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL  424 (464)
T ss_dssp             CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred             eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence            9999999999998  5799999999999999999987766553 667788899999999999999 99999999998754


Q ss_pred             ccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ..              ..+..+..+|.+++|+ .+.++++++.+|
T Consensus       425 ~~--------------~~~~~~~~~v~~v~~~-~~~l~~~~~~~g  454 (464)
T 3v7d_B          425 VH--------------ANILKDADQIWSVNFK-GKTLVAAVEKDG  454 (464)
T ss_dssp             EE--------------SCTTTTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred             Ee--------------hhhccCCCcEEEEEec-CCEEEEEEEeCC
Confidence            21              1234567889999998 455666666665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.7e-33  Score=307.72  Aligned_cols=290  Identities=26%  Similarity=0.496  Sum_probs=254.8

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+.... .+..++.+|.+.|++++|+  ++++++|+.||.|++||+.+                          
T Consensus       138 dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~--------------------------  188 (445)
T 2ovr_B          138 DNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET--------------------------  188 (445)
T ss_dssp             TSCEEEEETTTC-CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------------------------
T ss_pred             CCcEEEEECCCC-cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--------------------------
Confidence            356788876543 3456778899999999998  67999999999999999875                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                        ......+.+|...|.+++|+  ++.+++|+.||+|++||+.+++.+..+.+|..+|.++.|  ++.++++|+.||.|+
T Consensus       189 --~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~  262 (445)
T 2ovr_B          189 --GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK  262 (445)
T ss_dssp             --TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred             --CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence              23456677899999999996  678999999999999999999999999999999999999  788999999999999


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                      +||+++++++..+.+|...|.+++|  +++++++|+.||.|++||+++++++..+.+|...+.++.++  +.+|++|+.|
T Consensus       263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  338 (445)
T 2ovr_B          263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD  338 (445)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred             EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCC
Confidence            9999999999999999999999999  88999999999999999999999999999999999988875  6799999999


Q ss_pred             CeEEEEeCCCCeeeEEeeC---CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913          569 GTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  645 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~---h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  645 (670)
                      |.|++||+.+++.+..+.+   |...|++++|+  +++|++|+.||.|++||+.++........          .....+
T Consensus       339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------~~~~~~  406 (445)
T 2ovr_B          339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT----------LESGGS  406 (445)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE----------CTTGGG
T ss_pred             CeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec----------cccCCC
Confidence            9999999999999999886   88899999996  67999999999999999998754321100          111356


Q ss_pred             CCCeEEEEEecCCcEEEEeeCCCC
Q 005913          646 STPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       646 ~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ..+|.+++|+|++.++|+|+.||+
T Consensus       407 ~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          407 GGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             TCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CceEEEEEecCCEEEEEEcccCCC
Confidence            778999999999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.8e-35  Score=308.51  Aligned_cols=260  Identities=22%  Similarity=0.408  Sum_probs=223.8

Q ss_pred             cceecCCCCCC-ceeEEE-e--ecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCC
Q 005913          330 NRVHLSSAALP-SVSFYT-F--INTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPR  401 (670)
Q Consensus       330 ~~~~l~~~~~p-s~~~~t-~--~~~~~~V~~l~fs~d----~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~  401 (670)
                      ..+++|+.... ....+. +  ..+...|++++|+|+    +.+|++|+.||.|+||++.+                   
T Consensus        44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-------------------  104 (366)
T 3k26_A           44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT-------------------  104 (366)
T ss_dssp             TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT-------------------
T ss_pred             CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh-------------------
Confidence            46777765432 222222 2  225678999999999    67999999999999999874                   


Q ss_pred             ccccCCCCCccceeeeecCccCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEe---eCCCccEeEEEEecCCCE
Q 005913          402 EDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHY  477 (670)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~g~~  477 (670)
                               ......+.+|...|++++|+| ++.+|++|+.||+|++||+.+++.+..+   .+|...|.+++|+|++.+
T Consensus       105 ---------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (366)
T 3k26_A          105 ---------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK  175 (366)
T ss_dssp             ---------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred             ---------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE
Confidence                     234566778999999999999 8999999999999999999999988888   689999999999999999


Q ss_pred             EEEEECCCcEEEEECCCCceeEEec----------------------------ccCCCeeEEEEcCCCCEEEEEEcCCcE
Q 005913          478 FASSSHDRTARIWSMDRIQPLRIMA----------------------------GHLSDVDCVRWHINCNYIATGSSDKTV  529 (670)
Q Consensus       478 l~s~s~dg~v~lwd~~~~~~~~~~~----------------------------~~~~~v~~v~~~p~~~~l~tgs~dg~I  529 (670)
                      |++++.||.|++||+++++....+.                            +|...|.+++|+  ++++++++.||.|
T Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i  253 (366)
T 3k26_A          176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI  253 (366)
T ss_dssp             EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred             EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence            9999999999999998765443333                            399999999998  7799999999999


Q ss_pred             EEEECCCCcE--------------EEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEeCCCCeee----EEeeCC-
Q 005913          530 RLWDVSSGEC--------------VRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLASGRCV----TPLMGH-  588 (670)
Q Consensus       530 ~iwd~~~~~~--------------~~~~~~h~~~I~~l~~sp~--g~~l~sg~~dg~I~iwDl~~~~~~----~~~~~h-  588 (670)
                      ++||++++..              +..+..|...|.+++|+|+  |++|++|+.||.|++||+.+++..    ..+.+| 
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  333 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK  333 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred             EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence            9999988754              7888899999999999999  999999999999999999988643    467777 


Q ss_pred             -CcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          589 -TSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       589 -~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                       ...|++++|+|++++|++|+.||.|++||+.
T Consensus       334 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          334 CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence             7999999999999999999999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.6e-34  Score=327.90  Aligned_cols=262  Identities=27%  Similarity=0.428  Sum_probs=225.9

Q ss_pred             ccceecCCCCCC----ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccc
Q 005913          329 RNRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (670)
Q Consensus       329 ~~~~~l~~~~~p----s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (670)
                      ...+++|+....    ..+...+.+|...|+|++|+|++++|++|+.||.|+|||+.+                      
T Consensus       404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~----------------------  461 (694)
T 3dm0_A          404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA----------------------  461 (694)
T ss_dssp             TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred             CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------
Confidence            357788865332    345567889999999999999999999999999999999875                      


Q ss_pred             cCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe---eCCCccEeEEEEecCC--CEEE
Q 005913          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQG--HYFA  479 (670)
Q Consensus       405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~g--~~l~  479 (670)
                            ......+.+|.+.|++++|+|++++|++|+.|++|++||+.........   .+|...|.+++|+|++  ..++
T Consensus       462 ------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          462 ------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             ------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             ------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence                  2345678899999999999999999999999999999998754433332   3688899999999986  6899


Q ss_pred             EEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC
Q 005913          480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG  559 (670)
Q Consensus       480 s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g  559 (670)
                      +|+.|++|++||+++.+....+.+|.+.|.+++|+|++++|++|+.||+|++||+++++++..+.. ...|.+++|+|++
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~  614 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNR  614 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999887754 5679999999999


Q ss_pred             CEEEEEECCCeEEEEeCCCCeeeEEeeCCC-------------------cceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          560 RYMASGDEDGTIMMWDLASGRCVTPLMGHT-------------------SCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       560 ~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~-------------------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      .+|++++ ++.|++||+.++..+..+..+.                   ..+++++|+|+|++|++|+.||+|+||++..
T Consensus       615 ~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          615 YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            9888776 5669999999998887765321                   2378999999999999999999999999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=300.78  Aligned_cols=293  Identities=18%  Similarity=0.260  Sum_probs=237.4

Q ss_pred             EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .+..|.+.|+|++|+| ++++||+|+.||.|+||++.............               ..........+|...|
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------VCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------EEEECTTCTTCCSSCE
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------cccccccccccCCCcE
Confidence            4567889999999999 99999999999999999998632211100000               0000001123699999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC---CCEEEEEECCCcEEEEECCCCceeEE
Q 005913          425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       425 ~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---g~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      ++++|+| ++.+|++++.||.|++||+.++.....+. +...+.++.|+|.   +.++++++.||.|++||+++++.+..
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  181 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI  181 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence            9999999 77899999999999999999988887776 6778999999994   45999999999999999999999999


Q ss_pred             ecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCc-EEEEE---------------ecCCCCeEEEEEcCCCCEEE
Q 005913          501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGE-CVRIF---------------IGHRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~-~~~~~---------------~~h~~~I~~l~~sp~g~~l~  563 (670)
                      +.+|...|.+++|+|+++ .+++|+.||.|++||++++. ++..+               .+|...|.+++|+|+|++|+
T Consensus       182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  261 (408)
T 4a11_B          182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL  261 (408)
T ss_dssp             ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred             ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence            999999999999999998 58899999999999998775 44444               57888999999999999999


Q ss_pred             EEECCCeEEEEeCCCCeeeEEeeCCC-----cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          564 SGDEDGTIMMWDLASGRCVTPLMGHT-----SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       564 sg~~dg~I~iwDl~~~~~~~~~~~h~-----~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      +++.||.|++||+.+++....+..+.     ..+........+..+++++.|+.|++||+.++..               
T Consensus       262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---------------  326 (408)
T 4a11_B          262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ---------------  326 (408)
T ss_dssp             EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE---------------
T ss_pred             EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc---------------
Confidence            99999999999999988765544321     1222222233456677778899999999988643               


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      +..+..|..+|.+++|+|++.+|++|+.||+
T Consensus       327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             eeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence            4566788899999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=303.24  Aligned_cols=266  Identities=14%  Similarity=0.244  Sum_probs=227.5

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d---~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (670)
                      ...+++|+............+|...|+|++|+|+   +++|++|+.||.|++|++....                     
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------  101 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE---------------------  101 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS---------------------
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC---------------------
Confidence            4578888877666555556688899999999998   7999999999999999987521                     


Q ss_pred             CCCCCccceeeeecCccCEEEEEE------cCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeeCCCc----cEeEEE----
Q 005913          406 GPNGRKRSYTLYQGHSGPVYSASF------SPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNY----PVWDVQ----  470 (670)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~------sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~----~V~~l~----  470 (670)
                            .....+.+|.+.|.++.|      +|++++|++|+.||+|++||+.++. .+..+..|..    .|+++.    
T Consensus       102 ------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (357)
T 3i2n_A          102 ------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA  175 (357)
T ss_dssp             ------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred             ------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence                  134567789999999955      6889999999999999999999887 6777766554    899998    


Q ss_pred             EecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCCCcEEEEEe---
Q 005913          471 FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFI---  544 (670)
Q Consensus       471 ~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~---  544 (670)
                      |+|++.++++++.||.|++||+++++.... ..|...|.+++|+|   +++++++|+.||.|++||+++++.+..+.   
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence            778999999999999999999999877544 56889999999999   99999999999999999998876554444   


Q ss_pred             --cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCC-------------------eeeEEeeCCCcceEEEEEcCCCC
Q 005913          545 --GHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASG-------------------RCVTPLMGHTSCVWTLAYSCEGS  602 (670)
Q Consensus       545 --~h~~~I~~l~~sp~g~-~l~sg~~dg~I~iwDl~~~-------------------~~~~~~~~h~~~V~sl~~s~~g~  602 (670)
                        +|...|++++|+|+++ +|++|+.||.|++||+.++                   +.+..+.+|...|++++|+|+++
T Consensus       255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  334 (357)
T 3i2n_A          255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR  334 (357)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST
T ss_pred             cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC
Confidence              8999999999999998 8999999999999999754                   46777889999999999999999


Q ss_pred             EEE-EEECCCcEEEEeCCCCc
Q 005913          603 LLA-SGSADCTVKLWDVTTST  622 (670)
Q Consensus       603 ~l~-sgs~Dg~I~iwd~~~~~  622 (670)
                      +|+ +++.||.|+|||+.+..
T Consensus       335 ~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          335 GLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             TEEEEEETTSEEEEEEECC--
T ss_pred             eEEEEecCCCcEEEEECCCcc
Confidence            998 89999999999998743

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-33  Score=308.74  Aligned_cols=275  Identities=28%  Similarity=0.559  Sum_probs=242.1

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      ..++..+|+|+.|  ++++|++|+.||.|++||+.+                            ......+.+|.+.|.+
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~  178 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT----------------------------LECKRILTGHTGSVLC  178 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS----------------------------CCEEEEECCCSSCEEE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC----------------------------CeEEEEEcCCCCcEEE
Confidence            3456678999887  799999999999999999865                            2345667899999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee---EEecc
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---RIMAG  503 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~---~~~~~  503 (670)
                      ++|  ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+  +.++++|+.||+|++||+.++...   ..+.+
T Consensus       179 l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  254 (435)
T 1p22_A          179 LQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVG  254 (435)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             EEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecC
Confidence            999  68999999999999999999999999999999999999997  459999999999999999987765   67789


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      |...|.+++|  +++++++|+.||.|++||+++++++..+.+|...|.+++|+  +.++++|+.||.|++||+++++++.
T Consensus       255 ~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~  330 (435)
T 1p22_A          255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR  330 (435)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEE
Confidence            9999999999  78899999999999999999999999999999999999995  7899999999999999999999999


Q ss_pred             EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913          584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       584 ~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~  663 (670)
                      .+.+|...|.+++|  ++.+|++|+.||.|++||+..+.....      ......+..+..|..+|.+++|  ++.+|++
T Consensus       331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  400 (435)
T 1p22_A          331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA------PAGTLCLRTLVEHSGRVFRLQF--DEFQIVS  400 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS------CTTTTEEEEECCCSSCCCCEEE--CSSCEEE
T ss_pred             EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc------cccchheeeccCCCCCeEEEEe--CCCEEEE
Confidence            99999999999999  788999999999999999866432110      0111245667789999999999  7888999


Q ss_pred             eeCCCC
Q 005913          664 GALSKT  669 (670)
Q Consensus       664 gs~dgs  669 (670)
                      |+.||+
T Consensus       401 ~s~Dg~  406 (435)
T 1p22_A          401 SSHDDT  406 (435)
T ss_dssp             CCSSSE
T ss_pred             EeCCCE
Confidence            999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.5e-35  Score=305.79  Aligned_cols=244  Identities=24%  Similarity=0.334  Sum_probs=204.7

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEEEE
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW  490 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lw  490 (670)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|++||+.++.  .+..+.+|..+|++++|++  ++.+|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3467899999999999999999999999999999998765  4567899999999999986  48999999999999999


Q ss_pred             ECCCC--ceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcE---EEEEecCCCCeEEEEEcCC-----
Q 005913          491 SMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPD-----  558 (670)
Q Consensus       491 d~~~~--~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~-----  558 (670)
                      |++++  .....+.+|...|.+++|+|+  +.+|++|+.|++|++||++++..   ...+.+|...|.+++|+|+     
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            99876  356678899999999999998  78999999999999999987642   3445688899999999997     


Q ss_pred             ------------CCEEEEEECCCeEEEEeCCCC---eeeEEeeCCCcceEEEEEcCCC----CEEEEEECCCcEEEEeCC
Q 005913          559 ------------GRYMASGDEDGTIMMWDLASG---RCVTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKLWDVT  619 (670)
Q Consensus       559 ------------g~~l~sg~~dg~I~iwDl~~~---~~~~~~~~h~~~V~sl~~s~~g----~~l~sgs~Dg~I~iwd~~  619 (670)
                                  +.+|++|+.|+.|++||+..+   .++..+.+|...|.+++|+|++    .+|++|+.||+|+||++.
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence                        478999999999999999765   4677888999999999999986    899999999999999987


Q ss_pred             CCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ......           .....+..+..+|++++|+|++.+||+|+.||+
T Consensus       247 ~~~~~~-----------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          247 DASSNT-----------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             STTCCC-----------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             Cccccc-----------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            632100           001122346779999999999999999999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-33  Score=301.60  Aligned_cols=284  Identities=12%  Similarity=0.096  Sum_probs=223.0

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDS-------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg-------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      +..-+|.|++|+||+++||+|+.+.       .|++|++...........                  .......+.+|.
T Consensus        12 ~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~------------------~~~~~~~l~~~~   73 (365)
T 4h5i_A           12 NVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF------------------HILSEFALEDND   73 (365)
T ss_dssp             ECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE------------------EEEEEEECCTTS
T ss_pred             CCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeee------------------eeeeEEEccCCC
Confidence            3445799999999999999997654       499999875322110000                  011223466788


Q ss_pred             cCEEEEEEcCCCCEEEEEe-----------CCCeEEEEeCCCCceeEE----e-----eCCCccEeEEEEecCCCEEEEE
Q 005913          422 GPVYSASFSPLGDFILSSS-----------ADTTIRLWSTKLNANLVC----Y-----KGHNYPVWDVQFNPQGHYFASS  481 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s-----------~Dg~I~lwd~~~~~~~~~----~-----~~h~~~V~~l~~sp~g~~l~s~  481 (670)
                      ..|.+++++  ++.+++|+           .|+++++|++........    .     ..+...+.+++|+|||++++++
T Consensus        74 ~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~a  151 (365)
T 4h5i_A           74 DSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIA  151 (365)
T ss_dssp             CCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred             CceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEE
Confidence            889888776  56666654           577899999876543221    1     1234558899999999998765


Q ss_pred             E--CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE--EecCCCCeEEEEEcC
Q 005913          482 S--HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSP  557 (670)
Q Consensus       482 s--~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~h~~~I~~l~~sp  557 (670)
                      +  .|++|++||+.+++++..+. |...|.+++|+|+|+++++++. +.+++|+..+++.+..  ..+|...|.+++|+|
T Consensus       152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp  229 (365)
T 4h5i_A          152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIA  229 (365)
T ss_dssp             ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred             ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence            5  68999999999999988876 7788999999999999999985 5577777777776543  346788899999999


Q ss_pred             CCCEEEEEECCC----eEEEEeCCCCee----eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccc
Q 005913          558 DGRYMASGDEDG----TIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE  629 (670)
Q Consensus       558 ~g~~l~sg~~dg----~I~iwDl~~~~~----~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  629 (670)
                      +|.++++++.|+    .+++||+..+..    ...+.+|...|++++|+|+|++||+|+.|++|+|||+.++..      
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~------  303 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM------  303 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE------
T ss_pred             CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE------
Confidence            999999999887    688999877653    345778999999999999999999999999999999988643      


Q ss_pred             ccCCcccccccc-cCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          630 KSGTNRLRSLKT-LPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       630 ~~~~~~~~~~~~-~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                               +.. +..|..+|++|+|+|+|++||+|+.|++
T Consensus       304 ---------~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          304 ---------SKIFKQAHSFAITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             ---------EEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             ---------EEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence                     333 4678999999999999999999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.1e-33  Score=304.97  Aligned_cols=270  Identities=22%  Similarity=0.383  Sum_probs=234.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      +++++||++ ++||+|. |++|+|||..+..                          ......+.+|...|++++|+|+|
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~--------------------------~~~~~~~~~~~~~V~sv~fspdg  159 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKEG  159 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTTS
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCcEEEEEECCCC
Confidence            788999975 6899885 8999999987521                          11223345788899999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecccCCCeeEEE
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~~~v~~v~  512 (670)
                      ++|++|+.||+|++||+.+++.+..+.+|...+.++.|+  +.++++|+.|+.+++||.... ..+..+.+|...+.++.
T Consensus       160 ~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~  237 (420)
T 4gga_A          160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  237 (420)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence            999999999999999999999999999999999988775  679999999999999998764 45677889999999999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCc----EEEEEecCCCCeEEEEEcCCCC-EEEEE--ECCCeEEEEeCCCCeeeEEe
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGR-YMASG--DEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~sp~g~-~l~sg--~~dg~I~iwDl~~~~~~~~~  585 (670)
                      |+|+++++++++.|+.|++||..+++    .+.....|.+.|.+++|+|++. .++++  +.|+.|++||+.++.++..+
T Consensus       238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~  317 (420)
T 4gga_A          238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  317 (420)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred             ecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence            99999999999999999999998765    3566778999999999999654 55554  47999999999999999888


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~  663 (670)
                      ..| ..+.++.|+++++.+++++  .||.|+|||+.++.               .+..+.+|..+|.+++|+|+|.+||+
T Consensus       318 ~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~---------------~v~~l~gH~~~V~~l~~spdg~~l~S  381 (420)
T 4gga_A          318 DAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---------------KVAELKGHTSRVLSLTMSPDGATVAS  381 (420)
T ss_dssp             ECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---------------EEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             ccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc---------------EEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            765 4688999999999988876  78999999998764               35677889999999999999999999


Q ss_pred             eeCCCC
Q 005913          664 GALSKT  669 (670)
Q Consensus       664 gs~dgs  669 (670)
                      |+.||+
T Consensus       382 ~s~D~t  387 (420)
T 4gga_A          382 AAADET  387 (420)
T ss_dssp             EETTTE
T ss_pred             EecCCe
Confidence            999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.3e-33  Score=315.16  Aligned_cols=293  Identities=20%  Similarity=0.249  Sum_probs=244.4

Q ss_pred             cceecCCCCCCceeEEEeecCCC---CEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913          330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~---~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (670)
                      ..+++|+... ..+..++..|..   .|++++|+|+ +++|++|+.||.|++||+...                      
T Consensus       183 ~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------------------  239 (615)
T 1pgu_A          183 GSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG----------------------  239 (615)
T ss_dssp             TEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC----------------------
T ss_pred             CcEEEEeCCC-cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC----------------------
Confidence            5677786433 334556677888   8999999999 999999999999999998752                      


Q ss_pred             CCCCCccceeee-e---cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC----CccEeEEEEecCCCE
Q 005913          406 GPNGRKRSYTLY-Q---GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHY  477 (670)
Q Consensus       406 ~~~~~~~~~~~~-~---~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~g~~  477 (670)
                            .....+ .   +|.+.|.+++|+ ++.+|++++.||+|++||+.+++.+..+..+    ...+.++.|+ ++.+
T Consensus       240 ------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  311 (615)
T 1pgu_A          240 ------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR  311 (615)
T ss_dssp             ------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE
T ss_pred             ------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCe
Confidence                  233344 4   799999999999 9999999999999999999999998888876    4678888886 8899


Q ss_pred             EEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCC-----------------------------------------
Q 005913          478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN-----------------------------------------  516 (670)
Q Consensus       478 l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~-----------------------------------------  516 (670)
                      +++++.||.|++||+.+++++..+.+|...|.+++| |+                                         
T Consensus       312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~  390 (615)
T 1pgu_A          312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS  390 (615)
T ss_dssp             EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred             EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence            999999999999999988887777776666555555 32                                         


Q ss_pred             -----------------------------------------------------------------CCEEEEEEc-CCcEE
Q 005913          517 -----------------------------------------------------------------CNYIATGSS-DKTVR  530 (670)
Q Consensus       517 -----------------------------------------------------------------~~~l~tgs~-dg~I~  530 (670)
                                                                                       ++++++++. |+.|+
T Consensus       391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ  470 (615)
T ss_dssp             TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence                                                                             344555555 66666


Q ss_pred             EEECCCCcEE-EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcC---------
Q 005913          531 LWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSC---------  599 (670)
Q Consensus       531 iwd~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~---------  599 (670)
                      +||+.+++.. ..+.+|...|++++|+|+|++|++++.||.|++||+.+++.+..+.+ |...|++++|+|         
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~  550 (615)
T 1pgu_A          471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE  550 (615)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred             EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence            6666655444 45567889999999999999999999999999999999999999888 999999999999         


Q ss_pred             -CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          600 -EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       600 -~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                       ++++|++|+.||+|++||+.++.              ..+..+..|..+|.+++|+|++. |++|+.||+
T Consensus       551 ~~~~~l~~~~~dg~i~iw~~~~~~--------------~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~  606 (615)
T 1pgu_A          551 IEEDLVATGSLDTNIFIYSVKRPM--------------KIIKALNAHKDGVNNLLWETPST-LVSSGADAC  606 (615)
T ss_dssp             CSCCEEEEEETTSCEEEEESSCTT--------------CCEEETTSSTTCEEEEEEEETTE-EEEEETTSC
T ss_pred             cCCCEEEEEcCCCcEEEEECCCCc--------------eechhhhcCccceEEEEEcCCCC-eEEecCCce
Confidence             99999999999999999998753              13456778899999999999999 999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=337.35  Aligned_cols=251  Identities=22%  Similarity=0.383  Sum_probs=221.4

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      ++.+|.+.|+|++|+|++++|++|+.||.|+||++...                          .......+.+|.++|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------~~~~~~~l~~h~~~V~   57 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW   57 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------CCccceeccCCcCceE
Confidence            46789999999999999999999999999999998631                          1345567889999999


Q ss_pred             EEEEcCC--CCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEEECCCC--ce
Q 005913          426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI--QP  497 (670)
Q Consensus       426 ~l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lwd~~~~--~~  497 (670)
                      +++|+|+  +++|++|+.||+|++||+.++.  .+..+.+|..+|++++|+|+  +.++++|+.||+|++||++++  ..
T Consensus        58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~  137 (753)
T 3jro_A           58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS  137 (753)
T ss_dssp             EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred             EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence            9999988  9999999999999999999886  67778889999999999999  999999999999999999876  34


Q ss_pred             eEEecccCCCeeEEEEcC-------------CCCEEEEEEcCCcEEEEECCCC----cEEEEEecCCCCeEEEEEcCC--
Q 005913          498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRSMILSLAMSPD--  558 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p-------------~~~~l~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~~l~~sp~--  558 (670)
                      ...+.+|...|.+++|+|             +++++++|+.||.|++||++++    .....+.+|.++|++++|+|+  
T Consensus       138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  217 (753)
T 3jro_A          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (753)
T ss_dssp             CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence            556778999999999999             5899999999999999999887    566778899999999999999  


Q ss_pred             -CCEEEEEECCCeEEEEeCCCCe-----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       559 -g~~l~sg~~dg~I~iwDl~~~~-----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                       +.+|++|+.||.|++||+.++.     .+.....|.+.|++++|+|+|++|++|+.||.|++|++....
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence             9999999999999999998874     333445688999999999999999999999999999998543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.4e-33  Score=345.17  Aligned_cols=312  Identities=23%  Similarity=0.382  Sum_probs=261.9

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+..... +..++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+                          
T Consensus       636 d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--------------------------  688 (1249)
T 3sfz_A          636 DKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--------------------------  688 (1249)
T ss_dssp             TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred             CCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence            3467788765443 4557778999999999999999999999999999999875                          


Q ss_pred             CCccceeeeecCccCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT  486 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp--~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~  486 (670)
                        ......+.+|.+.|.+++|+|  ++.++++|+.||+|++||+.++..+..+.+|..+|++++|+|++.++++|+.||+
T Consensus       689 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          689 --GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             --CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             --CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence              235567789999999999999  4558999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEe-------------------------------------------------------cccCCCeeEE
Q 005913          487 ARIWSMDRIQPLRIM-------------------------------------------------------AGHLSDVDCV  511 (670)
Q Consensus       487 v~lwd~~~~~~~~~~-------------------------------------------------------~~~~~~v~~v  511 (670)
                      |++||+.++.....+                                                       .+|...|.++
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            999998765433222                                                       2677889999


Q ss_pred             EEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC--------------
Q 005913          512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA--------------  577 (670)
Q Consensus       512 ~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~--------------  577 (670)
                      +|+|+++++++|+.||.|++||+.++..+..+.+|.+.|.+++|+|+|++|++++.||.|++||+.              
T Consensus       847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~  926 (1249)
T 3sfz_A          847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI  926 (1249)
T ss_dssp             EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence            999999999999999999999999999999999999999999999999999999999988888743              


Q ss_pred             -----------------------------------------------------------------CCeeeEEeeCCCcce
Q 005913          578 -----------------------------------------------------------------SGRCVTPLMGHTSCV  592 (670)
Q Consensus       578 -----------------------------------------------------------------~~~~~~~~~~h~~~V  592 (670)
                                                                                       ++..+..+.+|.+.|
T Consensus       927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A          927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp             EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred             eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence                                                                             233445556799999


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccccc-------------------C------CcccccccccCCCCC
Q 005913          593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS-------------------G------TNRLRSLKTLPTKST  647 (670)
Q Consensus       593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-------------------~------~~~~~~~~~~~~~~~  647 (670)
                      ++++|+|+|++|++++.||+|++||+.++..........                   +      ......+..+..|..
T Consensus      1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A         1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1086 (1249)
T ss_dssp             CCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC
Confidence            999999999999999999999999998865432211100                   0      011123445667888


Q ss_pred             CeEEEEEecCCcEEEEeeCCCC
Q 005913          648 PVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       648 ~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      +|.+++|+|++.+|++|+.||+
T Consensus      1087 ~v~~~~~s~d~~~l~s~s~d~~ 1108 (1249)
T 3sfz_A         1087 TVLSCAISSDATKFSSTSADKT 1108 (1249)
T ss_dssp             CCCCEEECSSSSSCEEECCSSC
T ss_pred             cEEEEEECCCCCEEEEEcCCCc
Confidence            9999999999999999999885

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-34  Score=319.51  Aligned_cols=276  Identities=7%  Similarity=0.036  Sum_probs=221.1

Q ss_pred             HcccceecCCCCCCce---eEEEeecCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCC
Q 005913          327 DLRNRVHLSSAALPSV---SFYTFINTHNGLNCASISQD------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND  397 (670)
Q Consensus       327 ~~~~~~~l~~~~~ps~---~~~t~~~~~~~V~~l~fs~d------~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~  397 (670)
                      .....+++|+......   ...++..+.+.|++++|+|+      +.+||+|+.||+|+||++..........       
T Consensus       180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-------  252 (524)
T 2j04_B          180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-------  252 (524)
T ss_dssp             --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-------
T ss_pred             CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-------
Confidence            3456788987543322   12455667788999999997      5799999999999999987532110000       


Q ss_pred             CCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeeCCCccEeEE--EEecC
Q 005913          398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDV--QFNPQ  474 (670)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l--~~sp~  474 (670)
                             .   ........+.+|.+.|++++|+++ ..|++|+.||+|++||+.++. ....+.+|..+|+++  .|+|+
T Consensus       253 -------~---~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~  321 (524)
T 2j04_B          253 -------K---MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF  321 (524)
T ss_dssp             -------E---CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTT
T ss_pred             -------e---eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCC
Confidence                   0   001233467889999999999986 489999999999999999764 456788999999999  57888


Q ss_pred             C-CEEEEEECCCcEEEEECCCCceeEEecccCC--CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeE
Q 005913          475 G-HYFASSSHDRTARIWSMDRIQPLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL  551 (670)
Q Consensus       475 g-~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~--~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~  551 (670)
                      + .+|++|+.|++|++||++++++...+.+|..  .|.+++|+|++..+++++.|++|++||++++.++..+.+|.+.|+
T Consensus       322 g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~  401 (524)
T 2j04_B          322 EDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT  401 (524)
T ss_dssp             SCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE
T ss_pred             CCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceE
Confidence            7 8999999999999999998888777777754  588999999999999999999999999999999888999999999


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEeCCC--------------------------------------------CeeeEEeeC
Q 005913          552 SLAMSPDGRYMASGDEDGTIMMWDLAS--------------------------------------------GRCVTPLMG  587 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~~dg~I~iwDl~~--------------------------------------------~~~~~~~~~  587 (670)
                      +++|+|+|++|++|+.||+|++||+..                                            +.++..+.+
T Consensus       402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g  481 (524)
T 2j04_B          402 AIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA  481 (524)
T ss_dssp             EEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------
T ss_pred             EEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC
Confidence            999999999999999999999998531                                            111233456


Q ss_pred             CCcceEEEEEcCCCC---EEEEEECCCcEEEEeCCC
Q 005913          588 HTSCVWTLAYSCEGS---LLASGSADCTVKLWDVTT  620 (670)
Q Consensus       588 h~~~V~sl~~s~~g~---~l~sgs~Dg~I~iwd~~~  620 (670)
                      |...|++++|+|++.   ++++|+.||+|+||++..
T Consensus       482 h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          482 HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            888999999999954   999999999999999876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5e-34  Score=307.71  Aligned_cols=276  Identities=17%  Similarity=0.291  Sum_probs=233.0

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       353 ~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ...+++++|+...++ +|+.||.|+||++...+..                        ......+.+|.+.|++++|+|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------------------------~~~~~~~~~h~~~V~~~~~~p   91 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV------------------------DKNVPLVCGHTAPVLDIAWCP   91 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC------------------------CTTCCCBCCCSSCEEEEEECT
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC------------------------CCCCceEecCCCCEEEEEeCC
Confidence            345688898865544 5789999999998642110                        123445678999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCC-------ceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEe-
Q 005913          432 -LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM-  501 (670)
Q Consensus       432 -~~~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~~-  501 (670)
                       ++++|++|+.||+|++|++.++       ..+..+.+|...|++++|+|++ .+|++|+.||+|++||+++++.+..+ 
T Consensus        92 ~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  171 (402)
T 2aq5_A           92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG  171 (402)
T ss_dssp             TCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence             8999999999999999999987       6688899999999999999998 69999999999999999999999999 


Q ss_pred             -cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE-ecCCCC-eEEEEEcCCCCEEEEE---ECCCeEEEEe
Q 005913          502 -AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSM-ILSLAMSPDGRYMASG---DEDGTIMMWD  575 (670)
Q Consensus       502 -~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~-I~~l~~sp~g~~l~sg---~~dg~I~iwD  575 (670)
                       .+|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+|.+. +.+++|+|++.+|++|   +.||.|++||
T Consensus       172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence             889999999999999999999999999999999999999988 688776 8999999999999999   7999999999


Q ss_pred             CCCCee-eEEee-CCCcceEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913          576 LASGRC-VTPLM-GHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL  652 (670)
Q Consensus       576 l~~~~~-~~~~~-~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  652 (670)
                      ++++.. +.... .|...|.+++|+|++++|+++ +.||.|++||+.++...           ...+..+. +..+|.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~-----------~~~l~~~~-~~~~v~~~  319 (402)
T 2aq5_A          252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF-----------LHYLSMFS-SKESQRGM  319 (402)
T ss_dssp             TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-----------EEEEEEEC-CSSCCSEE
T ss_pred             CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-----------eEeecccc-cCCcccce
Confidence            998764 33333 577889999999999998754 57999999999876521           01222333 56889999


Q ss_pred             EEecCCcEEEEe
Q 005913          653 QFSRRNLLFAAG  664 (670)
Q Consensus       653 ~fs~~~~~La~g  664 (670)
                      +|+|++.+++++
T Consensus       320 ~~sp~~~~~~s~  331 (402)
T 2aq5_A          320 GYMPKRGLEVNK  331 (402)
T ss_dssp             EECCGGGSCGGG
T ss_pred             EEecccccceec
Confidence            999999887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4e-33  Score=327.69  Aligned_cols=307  Identities=22%  Similarity=0.325  Sum_probs=256.7

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (670)
                      ..+++|+.... ....++..|.+.|++++|+|++++||+|+.||.|+||++.+                           
T Consensus        35 g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~---------------------------   86 (814)
T 3mkq_A           35 GRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT---------------------------   86 (814)
T ss_dssp             SEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT---------------------------
T ss_pred             CEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------------------------
Confidence            46788875543 34456678899999999999999999999999999999875                           


Q ss_pred             CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcE
Q 005913          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA  487 (670)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v  487 (670)
                       ......+.+|.+.|++++|+|++++|++|+.||+|++||+.++ .....+.+|..+|.+++|+| ++..|++++.||+|
T Consensus        87 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           87 -GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             -CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             -CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence             2355667889999999999999999999999999999999987 66778889999999999999 88999999999999


Q ss_pred             EEEECCCCceeEEecccC-CCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          488 RIWSMDRIQPLRIMAGHL-SDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~-~~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      ++||+.++.....+..+. ..+.+++|+|  +++++++|+.||.|++||+.+++++..+.+|...|.+++|+|+|.+|++
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  245 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS  245 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            999999888887777555 8899999999  9999999999999999999999999999999999999999999999999


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCE-EEEEECCCcEEEEeCCCCccccccccc-------------
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL-LASGSADCTVKLWDVTTSTKVLKTEEK-------------  630 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~-------------  630 (670)
                      ++.||.|++||+.+++.+..+..|...|++++|+|++.. +++++.++.+.+|++............             
T Consensus       246 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (814)
T 3mkq_A          246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA  325 (814)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCT
T ss_pred             EeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccc
Confidence            999999999999999999999999999999999999873 244445777889998765433222100             


Q ss_pred             ---------------cCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          631 ---------------SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       631 ---------------~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                                     .+............+...+.+++|+|+|+++++++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~  375 (814)
T 3mkq_A          326 SDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG  375 (814)
T ss_dssp             TCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE
T ss_pred             eeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec
Confidence                           00000011122234455688999999999888887

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-32  Score=289.84  Aligned_cols=264  Identities=16%  Similarity=0.226  Sum_probs=234.3

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+.... ....++..|.+.|++++|+|++++|++|+.||.|++|++.+.                         
T Consensus        53 dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------------------  106 (369)
T 3zwl_B           53 DSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-------------------------  106 (369)
T ss_dssp             SSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-------------------------
T ss_pred             CCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------
Confidence            346788875433 344567788999999999999999999999999999998752                         


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc-----------eeEEeeCCCc--cEeEEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNA-----------NLVCYKGHNY--PVWDVQ  470 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D-----g~I~lwd~~~~~-----------~~~~~~~h~~--~V~~l~  470 (670)
                         .....+. |...|.+++|+|++.++++++.+     |.|++||+....           ....+..|..  .+.+++
T Consensus       107 ---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          107 ---QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             ---CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             ---cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence               2233333 88899999999999999999999     999999987653           3445556666  899999


Q ss_pred             EecCCCEEEEEECCCcEEEEECCC-CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC
Q 005913          471 FNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM  549 (670)
Q Consensus       471 ~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~  549 (670)
                      |+|++.++++++.||.|++||+++ ...+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...
T Consensus       183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~  261 (369)
T 3zwl_B          183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP  261 (369)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred             EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence            999999999999999999999998 78888999999999999999999999999999999999999999998887 7788


Q ss_pred             eEEEEEcCCCCEEEEEECCC--------------eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913          550 ILSLAMSPDGRYMASGDEDG--------------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~dg--------------~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i  615 (670)
                      +.+++|+|+++++++++.++              .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  341 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL  341 (369)
T ss_dssp             EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence            99999999999999999988              8999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcc
Q 005913          616 WDVTTSTK  623 (670)
Q Consensus       616 wd~~~~~~  623 (670)
                      |++..+..
T Consensus       342 w~~~~~~~  349 (369)
T 3zwl_B          342 HHFEKSYF  349 (369)
T ss_dssp             EEECHHHH
T ss_pred             EECccccc
Confidence            99987543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.1e-33  Score=297.83  Aligned_cols=267  Identities=16%  Similarity=0.165  Sum_probs=228.7

Q ss_pred             ccceecCCCCCCc-eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       329 ~~~~~l~~~~~ps-~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      ...+++|+..... .+..++..|...|++++|+|++++|++|+.||.|++|++....                       
T Consensus        29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------------------   85 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----------------------   85 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----------------------
T ss_pred             CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----------------------
Confidence            4567788755443 2455677889999999999999999999999999999986421                       


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeeCCCccEeEEEEecCCCEEEEEEC
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSH  483 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~  483 (670)
                         ......+.+|...|++++|+|++++|++|+.||.|++||+.....    .....+|...|.+++|+|++.+|++++.
T Consensus        86 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           86 ---WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             ---EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             ---eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence               112333467899999999999999999999999999999998763    2333568999999999999999999999


Q ss_pred             CCcEEEEECC------------------CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec
Q 005913          484 DRTARIWSMD------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG  545 (670)
Q Consensus       484 dg~v~lwd~~------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~  545 (670)
                      ||.|++||++                  .++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++++..+..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            9999999953                  6778888889999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC--Cee--------------------------------e------EEe
Q 005913          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--GRC--------------------------------V------TPL  585 (670)
Q Consensus       546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~--~~~--------------------------------~------~~~  585 (670)
                      |..+|.+++|+|++.+|++| .||.|++||+.+  +..                                .      ..+
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence            99999999999999988888 899999999987  421                                0      223


Q ss_pred             -eCCCcceEEEEEc-CCC---CEEEEEECCCcEEEEeCCCCc
Q 005913          586 -MGHTSCVWTLAYS-CEG---SLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       586 -~~h~~~V~sl~~s-~~g---~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                       .+|...|++++|+ ++|   .+|++|+.||+|++|++.+..
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence             4899999999976 676   999999999999999987754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-33  Score=329.99  Aligned_cols=234  Identities=14%  Similarity=0.166  Sum_probs=196.8

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      .....+|.+.|+|++|+|++++||+|+.||.|+||+....                             .......|..+
T Consensus        10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-----------------------------~~~~~~~~~~~   60 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-----------------------------EVVIKLEDRSA   60 (902)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-----------------------------EEEEECSSCCC
T ss_pred             cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-----------------------------EEEEEcCCCCC
Confidence            3455688999999999999999999999999999997531                             11222347889


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee-----
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-----  498 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~-----  498 (670)
                      |.+++|+| +++|++++.|++|++||+.+++.+..+. |...|++++|+|++.++++|+.||+|++||+++++..     
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~  138 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD  138 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence            99999999 8899999999999999999999888886 6678999999999999999999999999999987653     


Q ss_pred             ------EEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecC------------------CCCeEEE
Q 005913          499 ------RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------------------RSMILSL  553 (670)
Q Consensus       499 ------~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h------------------~~~I~~l  553 (670)
                            ..+.+|.+.|.+++|+|+ +..+++|+.||.| +||+++++++..+..|                  ...|.++
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v  217 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS  217 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence                  223578899999999996 5789999999999 9999999999888766                  4679999


Q ss_pred             EEcCCCCEEEEEECCCeEEEEeCCCCeeeEE--e---eC-------------CCcceEEEEEc----CCC-CEEEEEEC
Q 005913          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTP--L---MG-------------HTSCVWTLAYS----CEG-SLLASGSA  609 (670)
Q Consensus       554 ~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~--~---~~-------------h~~~V~sl~~s----~~g-~~l~sgs~  609 (670)
                      +|+|+|.+|++|+.||.|++||+++++++..  +   ..             |...|++++|+    |++ .+|++|+.
T Consensus       218 ~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          218 LYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             EECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            9999999999999999999999999887653  2   11             34578889884    332 34555543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-33  Score=316.09  Aligned_cols=281  Identities=17%  Similarity=0.217  Sum_probs=245.1

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC-EEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSA  427 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l  427 (670)
                      .+.+.|++++||||+++||+|+ ++.|+||++.+...                        .......+.+|.+. |+++
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~------------------------~~~~~~~~~~h~~~~v~~~   70 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS------------------------KVPPVVQFTGHGSSVVTTV   70 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC------------------------SSCSEEEECTTTTSCEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC------------------------ccccceEEecCCCceEEEE
Confidence            4577899999999999999997 88999999874200                        01356678899999 9999


Q ss_pred             EEcC--CCCEEEEEeCCCeEEEEeCCCC--------ceeEEeeCCCccEeEEEEecCCCEEEEEECC----CcEEEEECC
Q 005913          428 SFSP--LGDFILSSSADTTIRLWSTKLN--------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMD  493 (670)
Q Consensus       428 ~~sp--~~~~L~s~s~Dg~I~lwd~~~~--------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----g~v~lwd~~  493 (670)
                      +|+|  ++++|++|+.||+|++||+.++        .....+..|..+|.+++|+|++.++++++.+    +.|++||  
T Consensus        71 ~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--  148 (615)
T 1pgu_A           71 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--  148 (615)
T ss_dssp             EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--
T ss_pred             EECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--
Confidence            9999  9999999999999999999744        6677888899999999999999999999988    6888887  


Q ss_pred             CCceeEEecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEecCCC---CeEEEEEcCC-CCEEEEEECC
Q 005913          494 RIQPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPD-GRYMASGDED  568 (670)
Q Consensus       494 ~~~~~~~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~I~~l~~sp~-g~~l~sg~~d  568 (670)
                      .++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++.|
T Consensus       149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            5678889999999999999999998 899999999999999999999999999999   9999999999 9999999999


Q ss_pred             CeEEEEeCCCCeeeEEe-e---CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          569 GTIMMWDLASGRCVTPL-M---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~-~---~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                      |.|++||+.+++.+..+ .   .|...|.+++|+ ++.+|++++.||.|++||+.++........           ....
T Consensus       229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----------~~~~  296 (615)
T 1pgu_A          229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL-----------DKQQ  296 (615)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC-----------CTTC
T ss_pred             CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC-----------CCCc
Confidence            99999999999999998 6   899999999999 999999999999999999987654321110           0012


Q ss_pred             CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          645 KSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       645 ~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ....+.++.|+ ++.++++|+.+|+
T Consensus       297 ~~~~~~~~~~~-~~~~l~~~~~~g~  320 (615)
T 1pgu_A          297 LGNQQVGVVAT-GNGRIISLSLDGT  320 (615)
T ss_dssp             GGGCEEEEEEE-ETTEEEEEETTSC
T ss_pred             ccCceeEEEeC-CCCeEEEEECCCC
Confidence            34678888886 8889999998875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-32  Score=282.24  Aligned_cols=259  Identities=22%  Similarity=0.357  Sum_probs=229.1

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (670)
                      ..+++|+.... .....+..|.+.|++++|+|++++|++|+.||.|++|++....                         
T Consensus        39 g~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-------------------------   92 (313)
T 3odt_A           39 GTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS-------------------------   92 (313)
T ss_dssp             SEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT-------------------------
T ss_pred             CcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC-------------------------
Confidence            46788876433 3345667788999999999999999999999999999987421                         


Q ss_pred             CccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEE
Q 005913          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTAR  488 (670)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~  488 (670)
                      .......+.+|...|.+++|  ++++|++++.||.|++||  .+.....+..|..++.++.|+| ++.++++++.||.|+
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  168 (313)
T 3odt_A           93 GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIK  168 (313)
T ss_dssp             TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence            12344567789999999999  578999999999999999  6778888999999999999999 999999999999999


Q ss_pred             EEECCCCceeEEecc-cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          489 IWSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       489 lwd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      +||  ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+.+|...|++++|+|++ .|++++.
T Consensus       169 i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~  244 (313)
T 3odt_A          169 LWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE  244 (313)
T ss_dssp             EEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEET
T ss_pred             EEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEec
Confidence            999  4556777776 889999999999998 9999999999999999999999999999999999999999 6899999


Q ss_pred             CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      ||.|++||+.+++.+..+..|...|++++|+|++. +++++.||.|++||+.++..
T Consensus       245 dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          245 DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred             CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence            99999999999999999999999999999999998 66799999999999987643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=296.72  Aligned_cols=247  Identities=23%  Similarity=0.341  Sum_probs=216.9

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEE
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTAR  488 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~  488 (670)
                      ....+.+|.+.|++++|+|++++|++|+.||+|++|++.  +...+..+.+|..+|++++|+++  +.+|++|+.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            345678999999999999999999999999999999998  55667788899999999999976  99999999999999


Q ss_pred             EEECCCCc--eeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcC-----
Q 005913          489 IWSMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSP-----  557 (670)
Q Consensus       489 lwd~~~~~--~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp-----  557 (670)
                      +||+.+++  .+..+.+|...|.+++|+|+  +++|++++.||.|++||++++.  ....+.+|...|.+++|+|     
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99999887  77788889999999999999  9999999999999999999873  4556778999999999999     


Q ss_pred             --------CCCEEEEEECCCeEEEEeCCCCe----eeEEeeCCCcceEEEEEcCC---CCEEEEEECCCcEEEEeCCCCc
Q 005913          558 --------DGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCE---GSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       558 --------~g~~l~sg~~dg~I~iwDl~~~~----~~~~~~~h~~~V~sl~~s~~---g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                              ++.+|++|+.||.|++||++++.    .+..+.+|...|.+++|+|+   +.+|++++.||.|++||+..+.
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                    69999999999999999998764    45677889999999999999   8999999999999999998764


Q ss_pred             cccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          623 KVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ....          ..+.....+..+|.+++|+|++.+|++|+.||+
T Consensus       243 ~~~~----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  279 (379)
T 3jrp_A          243 GPWK----------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  279 (379)
T ss_dssp             SCCE----------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred             ccce----------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence            2110          122334457789999999999999999999885

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4e-32  Score=284.22  Aligned_cols=263  Identities=25%  Similarity=0.407  Sum_probs=227.7

Q ss_pred             cceecCCCCC----CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913          330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (670)
Q Consensus       330 ~~~~l~~~~~----ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (670)
                      ..+++|+...    ...+..++.+|...|++++|+|++++|++|+.||.|++|+...                       
T Consensus        61 ~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~-----------------------  117 (340)
T 4aow_A           61 KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT-----------------------  117 (340)
T ss_dssp             SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred             CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc-----------------------
Confidence            4688886432    2455667888999999999999999999999999999999874                       


Q ss_pred             CCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEeeCCCccEeEEEEecCC--CEEEEEE
Q 005913          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG--HYFASSS  482 (670)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~g--~~l~s~s  482 (670)
                           .........+...+..+.+++++.+|++|+.|+.+++||+...... ....+|...+..++|++++  .++++++
T Consensus       118 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          118 -----GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             -----TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             -----cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence                 2344455677889999999999999999999999999999865543 3456789999999999854  5789999


Q ss_pred             CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913          483 HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM  562 (670)
Q Consensus       483 ~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l  562 (670)
                      .|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..+ ..|.+++|+|++.++
T Consensus       193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  271 (340)
T 4aow_A          193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL  271 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE
T ss_pred             CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee
Confidence            9999999999999999999999999999999999999999999999999999999999888755 679999999988655


Q ss_pred             EEEECCCeEEEEeCCCCeeeEEee---------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          563 ASGDEDGTIMMWDLASGRCVTPLM---------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       563 ~sg~~dg~I~iwDl~~~~~~~~~~---------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                       +++.|+.|++||+.++..+..+.         +|...|++++|+|+|++|++|+.||+|+|||+.+++
T Consensus       272 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          272 -CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             -EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             -eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence             55679999999999887766553         688899999999999999999999999999998874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-33  Score=330.09  Aligned_cols=309  Identities=14%  Similarity=0.155  Sum_probs=234.6

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+..... +..++ .+.+.|++++|+|++++|++|+.||.|++||+..........                + 
T Consensus        78 D~~v~lWd~~~~~-~~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i----------------~-  138 (902)
T 2oaj_A           78 KDTVYVLSLYSQK-VLTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL----------------D-  138 (902)
T ss_dssp             TCEEEEEETTTCS-EEEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE----------------C-
T ss_pred             cCeEEEEECCCCc-EEEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee----------------c-
Confidence            4578889865543 23333 467889999999999999999999999999987532110000                0 


Q ss_pred             CCccce-eeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeeCC------------------CccEeE
Q 005913          409 GRKRSY-TLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGH------------------NYPVWD  468 (670)
Q Consensus       409 ~~~~~~-~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h------------------~~~V~~  468 (670)
                       ..... ..+.+|.++|++++|+|+ +..|++|+.||+| +||+++++.+..+..|                  ...|++
T Consensus       139 -~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~  216 (902)
T 2oaj_A          139 -NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ  216 (902)
T ss_dssp             -CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred             -cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence             00000 234679999999999996 4689999999999 9999999888888765                  467999


Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCceeEE--ec---cc-------------CCCeeE--------------------
Q 005913          469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MA---GH-------------LSDVDC--------------------  510 (670)
Q Consensus       469 l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~--~~---~~-------------~~~v~~--------------------  510 (670)
                      ++|+|+|.+|++|+.||+|++||+++++++..  +.   .|             ...|.+                    
T Consensus       217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            99999999999999999999999865543221  00   00             001111                    


Q ss_pred             --------------------------------------------------------------------------------
Q 005913          511 --------------------------------------------------------------------------------  510 (670)
Q Consensus       511 --------------------------------------------------------------------------------  510 (670)
                                                                                                      
T Consensus       297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l  376 (902)
T 2oaj_A          297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI  376 (902)
T ss_dssp             STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred             CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence                                                                                            


Q ss_pred             ------------------------------E----------------------------------EEcCCCCEEEEEEcC
Q 005913          511 ------------------------------V----------------------------------RWHINCNYIATGSSD  526 (670)
Q Consensus       511 ------------------------------v----------------------------------~~~p~~~~l~tgs~d  526 (670)
                                                    +                                  +|+|++++|++|+.|
T Consensus       377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D  456 (902)
T 2oaj_A          377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN  456 (902)
T ss_dssp             EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT
T ss_pred             EEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC
Confidence                                          1                                  224566778888888


Q ss_pred             CcEEEEECCCCcEE--EEE----e-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC----------------
Q 005913          527 KTVRLWDVSSGECV--RIF----I-----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----------------  579 (670)
Q Consensus       527 g~I~iwd~~~~~~~--~~~----~-----~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~----------------  579 (670)
                      ++|++||+.++...  ..+    .     +|...|.+++|+|+|++||+|+.||+|++||+.++                
T Consensus       457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~  536 (902)
T 2oaj_A          457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM  536 (902)
T ss_dssp             SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------------
T ss_pred             CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccce
Confidence            88888888776421  111    1     78889999999999999999999999999999766                


Q ss_pred             -----------------------------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc
Q 005913          580 -----------------------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK  630 (670)
Q Consensus       580 -----------------------------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  630 (670)
                                                   +++..+.+|.+.|++++|||+| +||+|+.|++|+|||+.....+..    
T Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~----  611 (902)
T 2oaj_A          537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM----  611 (902)
T ss_dssp             -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE----
T ss_pred             eeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE----
Confidence                                         2467788999999999999999 999999999999999876543211    


Q ss_pred             cCCcccccccccC-CCCCCeEEEEEe-----cCC---cEEEEeeCCCC
Q 005913          631 SGTNRLRSLKTLP-TKSTPVYSLQFS-----RRN---LLFAAGALSKT  669 (670)
Q Consensus       631 ~~~~~~~~~~~~~-~~~~~V~~l~fs-----~~~---~~La~gs~dgs  669 (670)
                            ..+..+. .|...|++++|+     |||   .+|++|+.|++
T Consensus       612 ------~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t  653 (902)
T 2oaj_A          612 ------ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE  653 (902)
T ss_dssp             ------EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred             ------eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence                  0123454 788899999999     885   89999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3e-33  Score=299.17  Aligned_cols=261  Identities=16%  Similarity=0.189  Sum_probs=218.3

Q ss_pred             ccceecCCCCCCcee-EEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          329 RNRVHLSSAALPSVS-FYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~-~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      ...+++|+....... .+...+|.+.|++++|+| ++++|++|+.||.|++||+....                      
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------------  152 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV----------------------  152 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE----------------------
T ss_pred             CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc----------------------
Confidence            357888877654433 333347889999999999 78999999999999999987410                      


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCC
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR  485 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg  485 (670)
                          ........+|...|.+++|+|++++|++|+.||.|++||+ ++..+..+.+|...|.+++|+|++. ++++|+.|+
T Consensus       153 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  227 (383)
T 3ei3_B          153 ----IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA  227 (383)
T ss_dssp             ----EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             ----eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence                1122223345689999999999999999999999999999 4778889999999999999999998 999999999


Q ss_pred             cEEEEECCC----CceeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-------------
Q 005913          486 TARIWSMDR----IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------------  547 (670)
Q Consensus       486 ~v~lwd~~~----~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-------------  547 (670)
                      +|++||+++    +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.+|.             
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (383)
T 3ei3_B          228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT  306 (383)
T ss_dssp             EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred             EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence            999999987    5566666 6999999999999 99999999999999999999988877776553             


Q ss_pred             ----CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          548 ----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       548 ----~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                          +.+..++|+|+|++  +|+.||.|++||+.+++++..+.+  |.+.+..++|+|++++|++|+ ||.|+|||+.+
T Consensus       307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence                33445666666666  777899999999999999999987  457788889999999999997 99999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-32  Score=281.80  Aligned_cols=270  Identities=21%  Similarity=0.356  Sum_probs=229.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      +++++||+++ +||+|. |++|+|||+.+...                          .....+.+|...|++++|+|++
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~--------------------------~~~~~~~~~~~~V~~v~~~~~~   79 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDI--------------------------LQLLQMEQPGEYISSVAWIKEG   79 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCE--------------------------EEEEECCSTTCCEEEEEECTTS
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCE--------------------------EEEEEecCCCCeEEEEEECCCC
Confidence            5789999886 888875 99999999875211                          1222345788899999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecccCCCeeEEE
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~~~~~v~~v~  512 (670)
                      ++|++|+.||+|++|++.+++.+..+.+|...+.++.  +++..+++|+.++.+++|+.... ..+..+.+|...+.++.
T Consensus        80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (318)
T 4ggc_A           80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  157 (318)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             CEEEEEECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence            9999999999999999999999999999998887655  45779999999999999998765 45677889999999999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcE----EEEEecCCCCeEEEEEcCCCCE---EEEEECCCeEEEEeCCCCeeeEEe
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY---MASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~----~~~~~~h~~~I~~l~~sp~g~~---l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      |+++++++++++.||.|++||+++++.    ......+.+.|.+++++|++..   +++++.++.|++||..........
T Consensus       158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred             EcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence            999999999999999999999987653    4556678889999999997653   345678899999999988776554


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~  663 (670)
                       .+...+..+.|+|++..+++++  .||.|+|||+.++.               .+..+..|..+|++++|+|+|.+||+
T Consensus       238 -~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---------------~~~~l~gH~~~V~~l~~spdg~~l~S  301 (318)
T 4ggc_A          238 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---------------KVAELKGHTSRVLSLTMSPDGATVAS  301 (318)
T ss_dssp             -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---------------EEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             -cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---------------EEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence             4667899999999999887765  79999999998764               35667789999999999999999999


Q ss_pred             eeCCCC
Q 005913          664 GALSKT  669 (670)
Q Consensus       664 gs~dgs  669 (670)
                      |+.||+
T Consensus       302 ~s~D~~  307 (318)
T 4ggc_A          302 AAADET  307 (318)
T ss_dssp             EETTTE
T ss_pred             EecCCe
Confidence            999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.8e-32  Score=297.10  Aligned_cols=270  Identities=28%  Similarity=0.568  Sum_probs=238.6

Q ss_pred             EeecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          346 TFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       346 t~~~~~~~V-~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .+.+|.+.| +|+.+  ++++|++|+.||.|++||+.+                            ......+.+|.+.|
T Consensus       113 ~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~----------------------------~~~~~~~~~h~~~v  162 (445)
T 2ovr_B          113 VLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVT----------------------------GKCLRTLVGHTGGV  162 (445)
T ss_dssp             EEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------------------------CCEEEECCCCSSCE
T ss_pred             EecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCC----------------------------CcEEEEEcCCCCCE
Confidence            466777764 66554  689999999999999999875                            23456677999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ++++|+  +++|++|+.||+|++||+.+++.+..+.+|...|.++.|+  +.++++|+.||+|++||+.+++.+..+.+|
T Consensus       163 ~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  238 (445)
T 2ovr_B          163 WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH  238 (445)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            999998  6799999999999999999999999999999999999996  568999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~  584 (670)
                      ...|.+++|  +++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.++++|+.||.|++||+.+++++..
T Consensus       239 ~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~  314 (445)
T 2ovr_B          239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT  314 (445)
T ss_dssp             SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            999999999  7889999999999999999999999999999999999999  789999999999999999999999999


Q ss_pred             eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913          585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       585 ~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g  664 (670)
                      +.+|...+.++.++  +++|++|+.||.|++||+.++....            .+.....+..+|.+++|+  +.+|++|
T Consensus       315 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~------------~~~~~~~~~~~v~~~~~~--~~~l~s~  378 (445)
T 2ovr_B          315 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQ------------TLQGPNKHQSAVTCLQFN--KNFVITS  378 (445)
T ss_dssp             ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE------------EECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred             EcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEE------------EEccCCCCCCCEEEEEEC--CCEEEEE
Confidence            99999999988874  6799999999999999998765321            112222477899999996  5789999


Q ss_pred             eCCCC
Q 005913          665 ALSKT  669 (670)
Q Consensus       665 s~dgs  669 (670)
                      +.||+
T Consensus       379 ~~dg~  383 (445)
T 2ovr_B          379 SDDGT  383 (445)
T ss_dssp             ETTSE
T ss_pred             eCCCe
Confidence            99874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-34  Score=307.80  Aligned_cols=241  Identities=20%  Similarity=0.262  Sum_probs=207.4

Q ss_pred             eeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      .+..|.++|++++|+|++++|++|+.||+|++||+.++  ..+..+.+|..+|++++|+|++.+|++|+.|++|++||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34557789999999999999999999999999999988  6778889999999999999999999999999999999999


Q ss_pred             CCc---eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc---EEEEEec-CCCCeEEEEEcCCCCEEEEEE
Q 005913          494 RIQ---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE---CVRIFIG-HRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       494 ~~~---~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~---~~~~~~~-h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ++.   +...+.+|...|.+++|+|++++|++|+.|+.|++||+++++   ....+.+ |...|.+++|+|++++|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            876   677788999999999999999999999999999999999887   4677777 999999999999999999999


Q ss_pred             CCCeEEEEeCC------------------CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccc
Q 005913          567 EDGTIMMWDLA------------------SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (670)
Q Consensus       567 ~dg~I~iwDl~------------------~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~  628 (670)
                      .||.|++||+.                  .++++..+ +|.+.|++++|+|++++|++|+.||+|++||+.++...    
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~----  240 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP----  240 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC----
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc----
Confidence            99999999985                  35566667 89999999999999999999999999999999886531    


Q ss_pred             cccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          629 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                             ...+..+..|..+|.+++|+|+|.+|++|+.++
T Consensus       241 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          241 -------PRALITVKLSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             -------EEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             -------ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence                   112556778889999999999999999998765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-33  Score=303.98  Aligned_cols=301  Identities=12%  Similarity=0.083  Sum_probs=231.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ccccccCCCCC---CCC--C--CCcccc--CC------------
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG---QQAVSSGLQGE---NDT--T--PREDII--GP------------  407 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~---~~~~~~~~~~~---~~~--~--~~~~~~--~~------------  407 (670)
                      .+++|++|++||++|+++ .++.|++|++.+..   ...........   ...  .  ......  ..            
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468999999999977766 67899999987654   21111100000   000  0  000000  00            


Q ss_pred             -----CCCccceeeeecCccCEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCceeEEee--CCCccEeEEEEecCCCE
Q 005913          408 -----NGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTK--LNANLVCYK--GHNYPVWDVQFNPQGHY  477 (670)
Q Consensus       408 -----~~~~~~~~~~~~h~~~V~~l~~sp~~~~L-~s~s~Dg~I~lwd~~--~~~~~~~~~--~h~~~V~~l~~sp~g~~  477 (670)
                           ...........+|.+.|++++|+|++++| ++|+.||+|++||+.  ++..+..+.  .|...|.+++|+|++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                 00000111234677899999999999996 899999999999999  888887776  56788999999999999


Q ss_pred             EEEEECCCcEEEEECCCCceeE----EecccCCCeeEEEEcCC---CCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCC
Q 005913          478 FASSSHDRTARIWSMDRIQPLR----IMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSM  549 (670)
Q Consensus       478 l~s~s~dg~v~lwd~~~~~~~~----~~~~~~~~v~~v~~~p~---~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~  549 (670)
                      |++|+.+|.+++|++.++....    .+.+|...|.+++|+|+   +++|++|+.|+.|++||+.+++++.. +.+|...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998876544    67789999999999999   99999999999999999999998877 5589999


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC-------------------------CCcceEEEEEcCCCCEE
Q 005913          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-------------------------HTSCVWTLAYSCEGSLL  604 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~-------------------------h~~~V~sl~~s~~g~~l  604 (670)
                      |.+++|+ +|++|++|+.||.|++||+.+++++..+..                         +...|.+++|+|++++|
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            9999999 999999999999999999999998887763                         23578999999999999


Q ss_pred             EEEE-CCCcEEEEeC--CCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          605 ASGS-ADCTVKLWDV--TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       605 ~sgs-~Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      ++++ .|+.|+||++  .....            +..+..+..+ .+|.+++|+|++.++++++.+
T Consensus       323 ~~~~~~d~~i~iw~~~~~~~~~------------l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~  375 (450)
T 2vdu_B          323 AFFVEATKCIIILEMSEKQKGD------------LALKQIITFP-YNVISLSAHNDEFQVTLDNKE  375 (450)
T ss_dssp             EEEETTCSEEEEEEECSSSTTC------------EEEEEEEECS-SCEEEEEEETTEEEEEECCTT
T ss_pred             EEEECCCCeEEEEEeccCCCCc------------eeeccEeccC-CceEEEEecCCcEEEEEeccc
Confidence            9999 8999999999  33211            1234445555 789999999976666665543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.3e-33  Score=301.84  Aligned_cols=264  Identities=25%  Similarity=0.440  Sum_probs=227.4

Q ss_pred             CceeEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee
Q 005913          340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (670)
Q Consensus       340 ps~~~~t~~~~~~~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (670)
                      |.........|.+.|++++|+|+ +.+||+|+.+|.|+||++........                  ..........+.
T Consensus       117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------~~~~~~~~~~~~  178 (430)
T 2xyi_A          117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------PSGECQPDLRLR  178 (430)
T ss_dssp             -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------TTCCCCCSEEEE
T ss_pred             CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------ccccCCCcEEec
Confidence            34445567788999999999997 78999999999999999875211000                  111234566788


Q ss_pred             cCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-------eEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEE
Q 005913          419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI  489 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~l  489 (670)
                      +|.+.|++++|+|++. +|++|+.||+|++|++..+..       ...+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus       179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i  258 (430)
T 2xyi_A          179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI  258 (430)
T ss_dssp             CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence            9999999999999998 999999999999999987432       456778999999999999 7889999999999999


Q ss_pred             EECCCC---ceeEEecccCCCeeEEEEcCCCC-EEEEEEcCCcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCC-EEE
Q 005913          490 WSMDRI---QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR-YMA  563 (670)
Q Consensus       490 wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~-~l~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~-~l~  563 (670)
                      ||+++.   +++..+..|...|.+++|+|++. ++++|+.||.|++||+++ +.++..+..|...|.+++|+|++. +|+
T Consensus       259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence            999987   57788889999999999999987 688999999999999998 567888999999999999999985 799


Q ss_pred             EEECCCeEEEEeCCC--------------CeeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCC
Q 005913          564 SGDEDGTIMMWDLAS--------------GRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       564 sg~~dg~I~iwDl~~--------------~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~  621 (670)
                      +++.||.|++||+..              ...+..+.+|...|++++|+|++. +|++++.||.|+||++...
T Consensus       339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            999999999999987              356777788999999999999999 9999999999999998753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.9e-33  Score=288.04  Aligned_cols=255  Identities=18%  Similarity=0.298  Sum_probs=217.3

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEec--CCCEEEEEECCCcEE
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTAR  488 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp--~g~~l~s~s~dg~v~  488 (670)
                      ..+.+|.+.|++++|+|++++|++|+.||+|++||+.++    .....+.+|..+|.+++|+|  ++.+|++|+.||+|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            456799999999999999999999999999999999876    35667789999999999999  699999999999999


Q ss_pred             EEECCCC---------ceeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCCcEEEEEe-------------
Q 005913          489 IWSMDRI---------QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFI-------------  544 (670)
Q Consensus       489 lwd~~~~---------~~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------------  544 (670)
                      +||++.+         +++..+.+|...|.+++|+|+  +++|++++.||.|++||+++++.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999876         557788899999999999999  9999999999999999999887654332             


Q ss_pred             cCCCCeEEEEEcCC---CCEEEEEECCCeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCC----CEEEEEECCCcEEE
Q 005913          545 GHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKL  615 (670)
Q Consensus       545 ~h~~~I~~l~~sp~---g~~l~sg~~dg~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g----~~l~sgs~Dg~I~i  615 (670)
                      .|...+.+++|+|+   +.++++++.++.+.+|+...+..  +..+.+|...|++++|+|++    ++|++|+.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            57788999999997   99999999999999998887765  67788999999999999998    89999999999999


Q ss_pred             EeCCCCccccccccc-------------------------------cCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913          616 WDVTTSTKVLKTEEK-------------------------------SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       616 wd~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g  664 (670)
                      ||+..+.........                               ........+..+..|..+|.+++|+|++.+|++|
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            999875322111000                               0011124566677899999999999999999999


Q ss_pred             eCCCC
Q 005913          665 ALSKT  669 (670)
Q Consensus       665 s~dgs  669 (670)
                      +.||+
T Consensus       325 ~~dg~  329 (351)
T 3f3f_A          325 GDDGK  329 (351)
T ss_dssp             ETTSC
T ss_pred             cCCCc
Confidence            99985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.1e-33  Score=295.91  Aligned_cols=254  Identities=12%  Similarity=0.108  Sum_probs=202.6

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccc
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGF-----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS  413 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~-----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (670)
                      +++..+...|.|++++  ++.+++|+           .|+.+++|++...........                   ...
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-------------------~~~  125 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-------------------SVD  125 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-------------------EEC
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEee-------------------eec
Confidence            4556677778888765  55666654           577799998764221110000                   000


Q ss_pred             eeeeecCccCEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          414 YTLYQGHSGPVYSASFSPLGDFILSS--SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~~L~s~--s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      ......+...+.+++|||||++++++  +.|++|+|||+.+++.+..+. |...|.+++|+|+|.++++++.+ .+++|+
T Consensus       126 ~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~  203 (365)
T 4h5i_A          126 FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVIS  203 (365)
T ss_dssp             SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEE
T ss_pred             eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEE
Confidence            11123355678999999999987754  478999999999999888876 77789999999999999999854 566777


Q ss_pred             CCCCceeEE--ecccCCCeeEEEEcCCCCEEEEEEcCC----cEEEEECCCCcE----EEEEecCCCCeEEEEEcCCCCE
Q 005913          492 MDRIQPLRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY  561 (670)
Q Consensus       492 ~~~~~~~~~--~~~~~~~v~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~----~~~~~~h~~~I~~l~~sp~g~~  561 (670)
                      ..++..+..  ..+|...|.+++|+|+++++++++.|+    .+++||+..+..    ...+.+|..+|++++|+|+|++
T Consensus       204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~  283 (365)
T 4h5i_A          204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL  283 (365)
T ss_dssp             TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred             eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc
Confidence            666665533  346888899999999999999999887    688999887654    3457789999999999999999


Q ss_pred             EEEEECCCeEEEEeCCCCeeeEEe-eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          562 MASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       562 l~sg~~dg~I~iwDl~~~~~~~~~-~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      ||+|+.||.|+|||+.+++++..+ .+|...|++++|||||++|+|||.|++|+||++...
T Consensus       284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999999885 689999999999999999999999999999999654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.4e-32  Score=287.38  Aligned_cols=284  Identities=12%  Similarity=0.143  Sum_probs=214.7

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +...|.+.|+|++|||||++||+|+.+| ++||++....                            ..  ...+...+.
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~----------------------------~~--~~~~~~~~~   62 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA----------------------------HI--MSQEMRHLS   62 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE----------------------------EE--EEEECSCCC
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc----------------------------ee--eeeecCCeE
Confidence            4466788999999999999999998775 7899976411                            11  111223577


Q ss_pred             EEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecc
Q 005913          426 SASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG  503 (670)
Q Consensus       426 ~l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~-~~~~~~~~  503 (670)
                      .+++.++++.+ ++++.|++|++||+.+++.+..+. +..+|.++.|+++.  ++++ .|+.|++||+.+. +.+..+..
T Consensus        63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred             EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc
Confidence            88899988887 567788999999999999888887 66689999998764  4443 4789999999987 66655544


Q ss_pred             cCCCeeEEEEcCCCCEEEE--EEcCCcEEEEECCCCc----------------EEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          504 HLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGE----------------CVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~t--gs~dg~I~iwd~~~~~----------------~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                         ....+++++  +++++  |+.||.|++||+.++.                ++..+.+|.+.|++++|+|+|++|++|
T Consensus       139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~  213 (355)
T 3vu4_A          139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC  213 (355)
T ss_dssp             ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence               445566777  66666  5789999999999876                267889999999999999999999999


Q ss_pred             ECCCe-EEEEeCCCCeeeEEee-C-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccccc--------CCc
Q 005913          566 DEDGT-IMMWDLASGRCVTPLM-G-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKS--------GTN  634 (670)
Q Consensus       566 ~~dg~-I~iwDl~~~~~~~~~~-~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--------~~~  634 (670)
                      +.||+ |++||+.+++++..+. + |...|++++|+|+|++|++|+.|++|+|||+.............        ...
T Consensus       214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW  293 (355)
T ss_dssp             ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence            99998 9999999999999998 5 99999999999999999999999999999998754221110000        000


Q ss_pred             ccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          635 RLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       635 ~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .............+...++|++++.++++|+.||+
T Consensus       294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~  328 (355)
T 3vu4_A          294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM  328 (355)
T ss_dssp             CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE
T ss_pred             ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe
Confidence            00000011122334577999999999999998874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=300.70  Aligned_cols=301  Identities=14%  Similarity=0.097  Sum_probs=221.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCC---CCC--CccccC-CCCCccceeeeecCccC
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND---TTP--REDIIG-PNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~---~~~--~~~~~~-~~~~~~~~~~~~~h~~~  423 (670)
                      ...+|.+++|||||+++|+++.|++|+  +........   .......   ..+  ...... ......... -.+|...
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~---gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~-~~~~~~~   87 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDIN---CNSKNLFHVKEFPLEFENKLDFELAQQNGLL-NSQPVCY   87 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCS---SBGGGTEEEEEECCCCCCTTTTSCCCSSCSS-TTSCSCC
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccceec---CCCccEEEEEECCCCCcceEEEEeCCCceEe-ecCCCCc
Confidence            346899999999999999999999999  643322110   0000000   000  000000 111111111 1156889


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCc-----cEeEEEEecCCCEEEEEECCCcEEEEECCCCce-
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY-----PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-  497 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-----~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~-  497 (670)
                      |++++|||+|..||+++.||+|++|+...  ++..+. |..     .|.+++|||+|++|++|+.||+|++||+.++.. 
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            99999999999999999999999999654  666666 665     499999999999999999999999999998752 


Q ss_pred             ------eEEe----cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE---EEEE-ecCCCCeEEEEEcCCCCEEE
Q 005913          498 ------LRIM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC---VRIF-IGHRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       498 ------~~~~----~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~---~~~~-~~h~~~I~~l~~sp~g~~l~  563 (670)
                            +..+    .+|.+.|.+++|+|+|  +++++.|++|++||+.++..   .+.+ .+|...|.+++|+  |+.||
T Consensus       165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LA  240 (588)
T 2j04_A          165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVV  240 (588)
T ss_dssp             CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred             cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEE
Confidence                  5666    6788899999999999  88899999999999988773   3556 4788899999999  68999


Q ss_pred             EEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEE--cCCCCEEEEEECCCcEEEEeCCCCc-----cccccccc---cCC
Q 005913          564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY--SCEGSLLASGSADCTVKLWDVTTST-----KVLKTEEK---SGT  633 (670)
Q Consensus       564 sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~--s~~g~~l~sgs~Dg~I~iwd~~~~~-----~~~~~~~~---~~~  633 (670)
                      +++ +|.|++||+.+++......+|.+.|++++|  +|++..|++++.||+ ++|....-.     .......+   .-.
T Consensus       241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~  318 (588)
T 2j04_A          241 LTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWS  318 (588)
T ss_dssp             EEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTT
T ss_pred             EEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEE
Confidence            987 699999999988875444489999999999  999999999999999 999986211     00000000   000


Q ss_pred             cccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       634 ~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      .....+..+.+ ...|++++|||+|.++|+++.
T Consensus       319 ~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          319 TIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             TTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            00011333333 556999999999999998874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.1e-32  Score=295.90  Aligned_cols=255  Identities=18%  Similarity=0.373  Sum_probs=219.0

Q ss_pred             eeeeecCccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC----------CceeEEeeCCCccEeEEEEecCCC-EEEEE
Q 005913          414 YTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGH-YFASS  481 (670)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~  481 (670)
                      .....+|.+.|++++|+|+ +.+|++++.||.|++|++..          ...+..+.+|...|++++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            4556789999999999997 67999999999999999986          567888999999999999999988 99999


Q ss_pred             ECCCcEEEEECCCCce-------eEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC---cEEEEEecCCCCe
Q 005913          482 SHDRTARIWSMDRIQP-------LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMI  550 (670)
Q Consensus       482 s~dg~v~lwd~~~~~~-------~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I  550 (670)
                      +.||+|++|++..+..       ...+.+|...|.+++|+| ++++|++++.||.|++||++++   +.+..+..|...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987322       466778999999999999 7889999999999999999987   5777888999999


Q ss_pred             EEEEEcCCCC-EEEEEECCCeEEEEeCCC-CeeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCcccccc
Q 005913          551 LSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       551 ~~l~~sp~g~-~l~sg~~dg~I~iwDl~~-~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      ++++|+|++. +|++|+.||.|++||+++ +.++..+.+|.+.|++++|+|++. +|++++.||.|+|||+.........
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            9999999987 788999999999999998 567888999999999999999984 7999999999999999874322111


Q ss_pred             ccccCCcccccccccCCCCCCeEEEEEecCCc-EEEEeeCCCC
Q 005913          628 EEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSKT  669 (670)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs~dgs  669 (670)
                      .. ........+..+..|...|.+++|+|++. +|++++.||+
T Consensus       361 ~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          361 ED-AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             HH-HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             cc-cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence            00 00111245667778889999999999999 9999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1e-32  Score=301.07  Aligned_cols=266  Identities=17%  Similarity=0.226  Sum_probs=216.7

Q ss_pred             ccceecCCCCCCc-eeEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       329 ~~~~~l~~~~~ps-~~~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      ...+++|+..... .+.+.+.+|.+.|+|++|+| ++++|++|+.||+|+|||+.+...                     
T Consensus       141 dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~---------------------  199 (435)
T 4e54_B          141 GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL---------------------  199 (435)
T ss_dssp             TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE---------------------
T ss_pred             CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce---------------------
Confidence            4578999876553 45566778999999999998 789999999999999999864110                     


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCC
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR  485 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg  485 (670)
                           ........+...+.+++|+|++.+|++|+.||+|++||++ ++.+..+.+|...|.+++|+|++. +|++|+.|+
T Consensus       200 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          200 -----RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             -----EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             -----eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence                 1111122344568899999999999999999999999997 456777889999999999999875 788999999


Q ss_pred             cEEEEECCCCceeEE---ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC------CeEEEEEc
Q 005913          486 TARIWSMDRIQPLRI---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS------MILSLAMS  556 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~---~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~------~I~~l~~s  556 (670)
                      +|++||+++.+....   ..+|...|.+++|+|+|++|++|+.||.|++||+.++.+...+..|..      .+....|+
T Consensus       274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (435)
T 4e54_B          274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH  353 (435)
T ss_dssp             BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred             eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence            999999987654433   357899999999999999999999999999999999998888776653      23456788


Q ss_pred             CCCCEEEEEE------------CCCeEEEEeCCCCeeeEEee-CCCcceEEE-EEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          557 PDGRYMASGD------------EDGTIMMWDLASGRCVTPLM-GHTSCVWTL-AYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       557 p~g~~l~sg~------------~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl-~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      |++.++++++            .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+||++..+.
T Consensus       354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred             CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence            8888777764            23579999999999988765 688889887 6999999999876 8899999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.8e-32  Score=293.02  Aligned_cols=270  Identities=16%  Similarity=0.231  Sum_probs=224.9

Q ss_pred             cceecCCCCCCc---eeEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913          330 NRVHLSSAALPS---VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (670)
Q Consensus       330 ~~~~l~~~~~ps---~~~~t~~~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (670)
                      ..+++|+.....   ....++.+|.+.|++++|+| ++++||+|+.||.|+||++.......                  
T Consensus        57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~------------------  118 (402)
T 2aq5_A           57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL------------------  118 (402)
T ss_dssp             CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS------------------
T ss_pred             CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc------------------
Confidence            456677543321   12234667889999999999 99999999999999999987532110                  


Q ss_pred             CCCCCccceeeeecCccCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEe--eCCCccEeEEEEecCCCEEEEEE
Q 005913          406 GPNGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSS  482 (670)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s  482 (670)
                         ........+.+|...|++++|+|++ .+|++|+.||+|++||+.+++.+..+  .+|...|.+++|+|++.+|++++
T Consensus       119 ---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          119 ---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             ---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             ---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence               0113456788999999999999998 69999999999999999999999888  78999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeEEe-cccCCC-eeEEEEcCCCCEEEEE---EcCCcEEEEECCCCcE-EEEEe-cCCCCeEEEEE
Q 005913          483 HDRTARIWSMDRIQPLRIM-AGHLSD-VDCVRWHINCNYIATG---SSDKTVRLWDVSSGEC-VRIFI-GHRSMILSLAM  555 (670)
Q Consensus       483 ~dg~v~lwd~~~~~~~~~~-~~~~~~-v~~v~~~p~~~~l~tg---s~dg~I~iwd~~~~~~-~~~~~-~h~~~I~~l~~  555 (670)
                      .||.|++||+++++.+..+ .+|.+. +.++.|+|++++|++|   +.|+.|++||+++++. +.... .|...+.+++|
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  275 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF  275 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence            9999999999999999888 788776 8999999999999999   7899999999998764 33332 57788999999


Q ss_pred             cCCCCEEEE-EECCCeEEEEeCCCCee-eEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          556 SPDGRYMAS-GDEDGTIMMWDLASGRC-VTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       556 sp~g~~l~s-g~~dg~I~iwDl~~~~~-~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      +|++++|++ |+.||.|++||+.+++. +..+..  |...|.+++|+|++.++++  .++.+++|++.++.
T Consensus       276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            999999975 45799999999998874 444443  5689999999999998775  57799999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-31  Score=291.03  Aligned_cols=254  Identities=26%  Similarity=0.560  Sum_probs=222.5

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+.... .+..++.+|.+.|+|++|  ++++|++|+.||.|++||+.+                          
T Consensus       152 dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--------------------------  202 (435)
T 1p22_A          152 DNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--------------------------  202 (435)
T ss_dssp             SSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--------------------------
T ss_pred             CCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--------------------------
Confidence            346788875443 345567789999999999  789999999999999999875                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                        ......+.+|...|.+++|+  +..+++|+.||+|++||+.++...   ..+.+|...|.+++|  ++.++++|+.||
T Consensus       203 --~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg  276 (435)
T 1p22_A          203 --GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR  276 (435)
T ss_dssp             --CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             --CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence              23456677899999999997  469999999999999999987765   677889999999999  688999999999


Q ss_pred             cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      .|++||+++++.+..+.+|...|.+++|  +++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++|
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg  352 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG  352 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence            9999999999999999999999999999  4689999999999999999999999999999999999999  78899999


Q ss_pred             ECCCeEEEEeCCCCe---------eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          566 DEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       566 ~~dg~I~iwDl~~~~---------~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +.||.|++||+.++.         ++..+.+|.+.|++++|  ++.+|++|+.||+|++||+.....
T Consensus       353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred             eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence            999999999997765         78889999999999999  788999999999999999987643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=297.16  Aligned_cols=255  Identities=12%  Similarity=0.220  Sum_probs=208.5

Q ss_pred             ceeee-ecCccCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---Cc---eeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913          413 SYTLY-QGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKL---NA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (670)
Q Consensus       413 ~~~~~-~~h~~~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~---~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d  484 (670)
                      ....+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+   +.   ....+ +|..+|.+++|+|++.+|++|+.|
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence            44555 78999999999999 999999999999999999876   32   33444 489999999999999999999999


Q ss_pred             CcEEEEECC---CCceeEEecc------------cCCCeeEEE--EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--
Q 005913          485 RTARIWSMD---RIQPLRIMAG------------HLSDVDCVR--WHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--  545 (670)
Q Consensus       485 g~v~lwd~~---~~~~~~~~~~------------~~~~v~~v~--~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--  545 (670)
                      |+|++||++   .++....+.+            +...+.++.  +++++++|++|+.||.|++||+++++++..+.+  
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  212 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP  212 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence            999999995   4544443332            445667776  568899999999999999999999999999988  


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-CCCcceEEEEEcC----CCCEEEEEECCCcEEEEeCCC
Q 005913          546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSC----EGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       546 h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~----~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      |.+.|++++|+|++.+|++|+.||.|++||+++++++..+. .|...|++++|+|    ++.+|++|+.||+|++||+.+
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence            88999999999999999999999999999999999999886 7888999996654    688999999999999999998


Q ss_pred             CccccccccccCCcccc---------cccccCC--CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          621 STKVLKTEEKSGTNRLR---------SLKTLPT--KSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       621 ~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      +................         .-..+..  +..+|.+++|+ ++.+|++|+.||+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~  351 (437)
T 3gre_A          293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS  351 (437)
T ss_dssp             TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred             CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence            76544332211100000         0012233  77889999999 8899999998874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-32  Score=286.53  Aligned_cols=230  Identities=14%  Similarity=0.094  Sum_probs=190.5

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEE
Q 005913          359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS  438 (670)
Q Consensus       359 fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s  438 (670)
                      +.+++.+|++|+.||.|++||+.+..                            ....+.  ...|.++.|+|+   +++
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~----------------------------~~~~~~--~~~v~~~~~~~~---~~s   90 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSK----------------------------TITTIT--TPNPRTGGEHPA---IIS   90 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSS----------------------------CEEEEE--EECCCTTCCCCS---EEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCc----------------------------EEEEEe--cCCceeeeeCCc---eEE
Confidence            44678999999999999999987522                            112222  467778888887   999


Q ss_pred             EeCCCeEEEEeCC---------CCceeEEee-CCCccEeEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEec-ccC
Q 005913          439 SSADTTIRLWSTK---------LNANLVCYK-GHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMA-GHL  505 (670)
Q Consensus       439 ~s~Dg~I~lwd~~---------~~~~~~~~~-~h~~~V~~l~~sp--~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-~~~  505 (670)
                      ++.|++|++|+..         ++..+..+. +|..+|.+++|+|  ++.++++|+.||+|++||+++++...... .|.
T Consensus        91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  170 (343)
T 3lrv_A           91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD  170 (343)
T ss_dssp             ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred             ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence            9999999999765         444444444 6778999999999  99999999999999999999998877664 455


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE-EEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~-h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      ..|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |.++|++++|+|+|.+|++++ |+.|++||+++++.+.
T Consensus       171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL  249 (343)
T ss_dssp             CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence            58999999999999999999999999999999988 77888 999999999999999999999 5599999999987765


Q ss_pred             EeeC---CCcceE--EEEEcCCCCEEEEEEC-CCcEEEEeCCCCc
Q 005913          584 PLMG---HTSCVW--TLAYSCEGSLLASGSA-DCTVKLWDVTTST  622 (670)
Q Consensus       584 ~~~~---h~~~V~--sl~~s~~g~~l~sgs~-Dg~I~iwd~~~~~  622 (670)
                      .+..   |...+.  +++|+|+|++|++++. |+.|+||++....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            5543   444444  6999999999999998 9999999997654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.2e-31  Score=275.08  Aligned_cols=255  Identities=15%  Similarity=0.162  Sum_probs=221.3

Q ss_pred             ccceecCCCCCCc--eeEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCCccccccCCCCCCCCCCCccc
Q 005913          329 RNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM-AKLGQQAVSSGLQGENDTTPREDI  404 (670)
Q Consensus       329 ~~~~~l~~~~~ps--~~~~t~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl-~~~~~~~~~~~~~~~~~~~~~~~~  404 (670)
                      ...+++|+.....  ........|...|++++|+|+++ +|++|+.||.|++|++ ...                     
T Consensus        32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------------------   90 (342)
T 1yfq_A           32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---------------------   90 (342)
T ss_dssp             TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---------------------
T ss_pred             CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---------------------
Confidence            3567777654333  33455668889999999999999 9999999999999998 641                     


Q ss_pred             cCCCCCccceeeeec--CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeEEeeCCCccEeEEEEec
Q 005913          405 IGPNGRKRSYTLYQG--HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL---------NANLVCYKGHNYPVWDVQFNP  473 (670)
Q Consensus       405 ~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~---------~~~~~~~~~h~~~V~~l~~sp  473 (670)
                              ....+.+  |...|.+++|+| +.+|++++.|+.|++||+.+         ++.+..+. |...|.+++|+|
T Consensus        91 --------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           91 --------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             --------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             --------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence                    2245667  999999999999 99999999999999999987         66666565 888999999998


Q ss_pred             CCCEEEEEECCCcEEEEECCC-Cc--eeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCC------cEEEEE
Q 005913          474 QGHYFASSSHDRTARIWSMDR-IQ--PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG------ECVRIF  543 (670)
Q Consensus       474 ~g~~l~s~s~dg~v~lwd~~~-~~--~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~------~~~~~~  543 (670)
                      ++  +++++.|+.|++||+++ +.  .......|...|.+++|+| +++++++|+.||.|++||+..+      +....+
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence            87  99999999999999988 54  3345557888999999999 9999999999999999999887      778888


Q ss_pred             ecCCC---------CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC-CcceEEEEEcCCCCEEEEEECCCc-
Q 005913          544 IGHRS---------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCT-  612 (670)
Q Consensus       544 ~~h~~---------~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs~Dg~-  612 (670)
                      ..|..         .|.+++|+|++++|++|+.||.|++||+.+++.+..+.+| ...|++++  |++++|++|+.||+ 
T Consensus       239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~  316 (342)
T 1yfq_A          239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF  316 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred             ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence            88865         9999999999999999999999999999999999999998 99999999  99999999999998 


Q ss_pred             EEEEeC
Q 005913          613 VKLWDV  618 (670)
Q Consensus       613 I~iwd~  618 (670)
                      .+.|..
T Consensus       317 ~~~~~~  322 (342)
T 1yfq_A          317 KTNAAI  322 (342)
T ss_dssp             HHCSSS
T ss_pred             cccccc
Confidence            555553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.8e-31  Score=309.85  Aligned_cols=245  Identities=22%  Similarity=0.340  Sum_probs=214.6

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeEEeeCCCccEeEEEEecC--CCEEEEEECCCcEEEE
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIW  490 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~dg~v~lw  490 (670)
                      ..+.+|.++|++++|+|++++|++|+.||+|++||+.  ++..+..+.+|..+|++++|+|+  +.+|++|+.||+|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4567999999999999999999999999999999998  45667788999999999999987  9999999999999999


Q ss_pred             ECCCCc--eeEEecccCCCeeEEEEcCC--CCEEEEEEcCCcEEEEECCCC--cEEEEEecCCCCeEEEEEcC-------
Q 005913          491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSP-------  557 (670)
Q Consensus       491 d~~~~~--~~~~~~~~~~~v~~v~~~p~--~~~l~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~sp-------  557 (670)
                      |+.+++  .+..+.+|...|.+++|+|+  ++++++|+.||.|++||++++  .....+.+|...|.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999886  67788899999999999999  999999999999999999887  34456778999999999999       


Q ss_pred             ------CCCEEEEEECCCeEEEEeCCCC----eeeEEeeCCCcceEEEEEcCC---CCEEEEEECCCcEEEEeCCCCccc
Q 005913          558 ------DGRYMASGDEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCE---GSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       558 ------~g~~l~sg~~dg~I~iwDl~~~----~~~~~~~~h~~~V~sl~~s~~---g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                            ++.+|++|+.||.|++||++++    ..+..+.+|.+.|++++|+|+   +.+|++|+.||+|++||+..+...
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~  242 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  242 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence                  5899999999999999999877    566778899999999999999   899999999999999999876421


Q ss_pred             cccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          625 LKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .          ...+.....+...|++++|+|+|.++++|+.||+
T Consensus       243 ~----------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~  277 (753)
T 3jro_A          243 W----------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (753)
T ss_dssp             C----------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred             c----------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence            1          1123344567889999999999999999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=6.3e-31  Score=283.11  Aligned_cols=236  Identities=17%  Similarity=0.148  Sum_probs=173.7

Q ss_pred             cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-----EeeCCCccEeEEEEec--------CCCEEEEEECCC
Q 005913          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-----CYKGHNYPVWDVQFNP--------QGHYFASSSHDR  485 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~-----~~~~h~~~V~~l~~sp--------~g~~l~s~s~dg  485 (670)
                      .|.+.+....+++++.+|++|+.|++|+|||+.++....     .+.+|...|++++|+|        ++++|++|+.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            445555555666677889999999999999999876543     3568999999999998        789999999999


Q ss_pred             cEEEEECCCCceeEEecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEE---------------------
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIF---------------------  543 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~---------------------  543 (670)
                      +|++||+.++.++..+.+|...|.+++|+|++ ++|++|+.||+|++||+++++.....                     
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            99999999888888888899999999999987 58999999999999999987654322                     


Q ss_pred             ----ecCCCCeEEEEEc-CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEc------------------C-
Q 005913          544 ----IGHRSMILSLAMS-PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYS------------------C-  599 (670)
Q Consensus       544 ----~~h~~~I~~l~~s-p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s------------------~-  599 (670)
                          .+|...+.++.|+ |+|+.|++++.|+.+++||+.++.....+..|...+..+.+.                  | 
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence                3577788999987 799999999999999999999887777666665554444333                  2 


Q ss_pred             -CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          600 -EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       600 -~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                       ++.++++|+.||+|++||+.++..               +.....+..+|.+++|+|+|++||+|+.+|.
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~---------------~~~~~~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDS---------------NSIPIQLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTC---------------CEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcE---------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence             344677888999999999987643               2334456779999999999999999998863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=8.5e-31  Score=285.34  Aligned_cols=247  Identities=13%  Similarity=0.276  Sum_probs=197.1

Q ss_pred             cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeeCCC------------ccEeEEEEecCC
Q 005913          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHN------------YPVWDVQFNPQG  475 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~------------~~V~~l~~sp~g  475 (670)
                      .|.+.|++++|+|++++|++|+.||.|++|++.++.           ....+.+|.            .+|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467999999999999999999999999999999776           477888998            889999999998


Q ss_pred             --CEEEEEECCCcEEEEECCCCcee---------------------------------------EE-ecccCCCeeEEEE
Q 005913          476 --HYFASSSHDRTARIWSMDRIQPL---------------------------------------RI-MAGHLSDVDCVRW  513 (670)
Q Consensus       476 --~~l~s~s~dg~v~lwd~~~~~~~---------------------------------------~~-~~~~~~~v~~v~~  513 (670)
                        .+|++++.|++|++||+..+...                                       +. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              89999999999999998763321                                       12 3689999999999


Q ss_pred             cCCCCEEEEEEcCCcEEEEECCC-CcEEEE-------EecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCee---
Q 005913          514 HINCNYIATGSSDKTVRLWDVSS-GECVRI-------FIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC---  581 (670)
Q Consensus       514 ~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~-------~~~h~~~I~~l~~sp~g-~~l~sg~~dg~I~iwDl~~~~~---  581 (670)
                      +|++++|++| .|+.|++||+++ ++.+..       +.+|...|.+++|+|++ .+|++|+.||.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999999 799999999994 444442       45899999999999998 9999999999999999999887   


Q ss_pred             -eEEeeCCCc------------ceEEEEEcCCCCEEEEEECCCcEEEEeCCC-CccccccccccCCcccccccc-c-CCC
Q 005913          582 -VTPLMGHTS------------CVWTLAYSCEGSLLASGSADCTVKLWDVTT-STKVLKTEEKSGTNRLRSLKT-L-PTK  645 (670)
Q Consensus       582 -~~~~~~h~~------------~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~  645 (670)
                       +..+.+|..            .|.+++|+|+|++|++++. |.|++||+.. +.............  ..+.. + ...
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~  341 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR--SKLCSLYENDC  341 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT--TTHHHHHHTSG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc--ccccccccccc
Confidence             778888876            8999999999999999999 9999999987 43221111100000  00000 0 000


Q ss_pred             CCCeEEEEEecCCcEEEEeeCCCC
Q 005913          646 STPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       646 ~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ...++.++|+|++.+|++|+.||+
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~  365 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNF  365 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTE
T ss_pred             cccceEEEECCCCCEEEEeccCCE
Confidence            012446999999999999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.6e-29  Score=270.87  Aligned_cols=247  Identities=21%  Similarity=0.309  Sum_probs=207.3

Q ss_pred             cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          349 NTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       349 ~~~~~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      .|...|++++|+| ++.+|++|+.||.|++|++...                            .... ...+...+.++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------------~~~~-~~~~~~~~~~~  147 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------------QTAD-VFNFEETVYSH  147 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------------EEEE-EEECSSCEEEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------------ccce-eccCCCceeee
Confidence            3788999999999 7889999999999999998752                            1222 22377889999


Q ss_pred             EEcCCC---CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCc-eeEEe-
Q 005913          428 SFSPLG---DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQ-PLRIM-  501 (670)
Q Consensus       428 ~~sp~~---~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~-~~~~~-  501 (670)
                      .|+|.+   .++++++.||.|++||+.++..+..+.+|..+|.+++|+|++. .|++|+.||.|++||+++.. ++..+ 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~  227 (408)
T 4a11_B          148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD  227 (408)
T ss_dssp             EECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred             EeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence            999854   4999999999999999999999999999999999999999998 58999999999999998765 44444 


Q ss_pred             --------------cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEE
Q 005913          502 --------------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYM  562 (670)
Q Consensus       502 --------------~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l  562 (670)
                                    .+|...|.+++|+|++++|++++.||.|++||+.+++....+..+.     ..+........+..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence                          5788999999999999999999999999999999988765443321     122222333445667


Q ss_pred             EEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       563 ~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      ++++.++.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||.|++||+.+....
T Consensus       308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred             EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence            77788999999999999999999999999999999999999999999999999999987653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.9e-29  Score=271.42  Aligned_cols=284  Identities=12%  Similarity=0.061  Sum_probs=233.3

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      ..........+.+++|+|++.++++++.++.|++||+.+......                       .....+.+|.+.
T Consensus       115 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------------~~~~~~~~~~~~  171 (433)
T 3bws_A          115 FISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL-----------------------SPPEKYKKKLGF  171 (433)
T ss_dssp             EEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE-----------------------CCCHHHHTTCCE
T ss_pred             EEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee-----------------------cCcccccccCCc
Confidence            334444556678999999888888888899999999875321110                       011134578999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEec
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~  502 (670)
                      |.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.++++++ .|+.|++||+++++.+..+.
T Consensus       172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~  251 (433)
T 3bws_A          172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD  251 (433)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred             eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence            99999999999999999999999999999999999999999999999999999886555 79999999999998888877


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEE--------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE-EEEECCCeEEE
Q 005913          503 GHLSDVDCVRWHINCNYIATGS--------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMM  573 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs--------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l-~sg~~dg~I~i  573 (670)
                      .+ ..+.+++|+|+++++++++        .||.|++||+.+++.+..+ .|...+.+++|+|+|+.+ ++++.|+.|++
T Consensus       252 ~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          252 KI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             CC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred             CC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence            54 5699999999999999988        4889999999999887765 456689999999999755 66689999999


Q ss_pred             EeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC---------------CCcEEEEeCCCCccccccccccCCccccc
Q 005913          574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---------------DCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~---------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      ||+.+++.+..+. +...+.+++|+|+|++|++++.               ||.|++||+.++...              
T Consensus       330 ~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~--------------  394 (433)
T 3bws_A          330 YDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK--------------  394 (433)
T ss_dssp             EETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE--------------
T ss_pred             EECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE--------------
Confidence            9999998887775 6778999999999999988886               579999999876432              


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeC-CCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGAL-SKT  669 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~-dgs  669 (670)
                       ..+.. ...+.+++|+|+|.+|++++. |++
T Consensus       395 -~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~  424 (433)
T 3bws_A          395 -EFWEA-GNQPTGLDVSPDNRYLVISDFLDHQ  424 (433)
T ss_dssp             -EEEEC-SSSEEEEEECTTSCEEEEEETTTTE
T ss_pred             -EEecC-CCCCceEEEcCCCCEEEEEECCCCe
Confidence             22222 346899999999999988765 653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=8.5e-31  Score=282.13  Aligned_cols=246  Identities=14%  Similarity=0.130  Sum_probs=182.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      +...+....+++++.+||+|+.|++|+||++.......                       ......+.||.+.|++++|
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------~~~~~~~~gH~~~v~~v~~  144 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------QHVLGGKSGHHNFVNDIDI  144 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------EEEECTTTSCSSCEEEEEE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------eeeecccCCCCCceEEEEE
Confidence            34445566677788999999999999999987522110                       1223456799999999999


Q ss_pred             cC--------CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEE
Q 005913          430 SP--------LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       430 sp--------~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      +|        ++++|++|+.|++|+|||+.++..+....+|..+|.+++|+|++ .+|++|+.||+|++||+.+++....
T Consensus       145 ~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~  224 (393)
T 4gq1_A          145 ADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE  224 (393)
T ss_dssp             EEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred             ccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence            98        78899999999999999999888888888899999999999987 4799999999999999987654322


Q ss_pred             -------------------------ecccCCCeeEEEEc-CCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEE
Q 005913          501 -------------------------MAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA  554 (670)
Q Consensus       501 -------------------------~~~~~~~v~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~  554 (670)
                                               ..+|...+.++.|+ |+++.|++++.|+++++||+.+++....+..|...+..+.
T Consensus       225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~  304 (393)
T 4gq1_A          225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN  304 (393)
T ss_dssp             ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred             ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence                                     23677889999987 8999999999999999999998877766666655544443


Q ss_pred             Ec------------------C--CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913          555 MS------------------P--DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (670)
Q Consensus       555 ~s------------------p--~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~  614 (670)
                      +.                  |  ++.++++|+.||.|++||+.++.++..+.+|..+|++++|+|+|++||+++.+| +.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~  383 (393)
T 4gq1_A          305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VL  383 (393)
T ss_dssp             CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EE
T ss_pred             EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eE
Confidence            33                  3  344677888999999999999999988889999999999999999999998766 66


Q ss_pred             EEeCC
Q 005913          615 LWDVT  619 (670)
Q Consensus       615 iwd~~  619 (670)
                      +|.+.
T Consensus       384 lvrL~  388 (393)
T 4gq1_A          384 LTRLM  388 (393)
T ss_dssp             EEEEG
T ss_pred             EEEEe
Confidence            66653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.3e-29  Score=274.43  Aligned_cols=246  Identities=14%  Similarity=0.085  Sum_probs=208.3

Q ss_pred             ecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee--ecCccCE
Q 005913          348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGHSGPV  424 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V  424 (670)
                      .++.+.|+|++|+|++++| |+|+.||.|+||++....                          ......+  ..|...|
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~--------------------------~~~~~~~~~~~~~~~v  152 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS--------------------------KNVLKLRKRFCFSKRP  152 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS--------------------------SSCEEEEEEEECSSCE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC--------------------------CceeeeeecccCCCCc
Confidence            4567789999999999996 899999999999987200                          1122333  3677999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----EeeCCCccEeEEEEecC---CCEEEEEECCCcEEEEECCCCce
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~l~~sp~---g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      ++++|+|++++|++|+.+|.|++|++.++....    .+.+|...|++++|+|+   +.+|++|+.|++|++||+.+++.
T Consensus       153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence            999999999999999999999999998776544    77889999999999999   99999999999999999999988


Q ss_pred             eEE-ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-------------------------CCCeE
Q 005913          498 LRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------------------RSMIL  551 (670)
Q Consensus       498 ~~~-~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------------------~~~I~  551 (670)
                      +.. +.+|...|.+++|+ ++++|++|+.|+.|++||+++++++..+..+                         ...|.
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            877 55899999999999 9999999999999999999999998887632                         35699


Q ss_pred             EEEEcCCCCEEEEEE-CCCeEEEEeC--CCC---eeeEEeeCCCcceEEEEEcCCCCEEEEEEC------CCcEEEEeCC
Q 005913          552 SLAMSPDGRYMASGD-EDGTIMMWDL--ASG---RCVTPLMGHTSCVWTLAYSCEGSLLASGSA------DCTVKLWDVT  619 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~-~dg~I~iwDl--~~~---~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~------Dg~I~iwd~~  619 (670)
                      +++|+|++++|++++ .|+.|++||+  .++   ..+..+..| +.|.+++|+|++.++++++.      +..|.+|.+.
T Consensus       312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            999999999999999 8999999999  666   677778888 88999999996433433332      5568999876


Q ss_pred             CC
Q 005913          620 TS  621 (670)
Q Consensus       620 ~~  621 (670)
                      ..
T Consensus       391 ~~  392 (450)
T 2vdu_B          391 LN  392 (450)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=3.1e-29  Score=264.40  Aligned_cols=260  Identities=16%  Similarity=0.173  Sum_probs=218.4

Q ss_pred             ccceecCCCCCC-ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          329 RNRVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       329 ~~~~~l~~~~~p-s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      ...+++|+.... ......+..|.+.|++++|+|++++|++|+.||.|++||+...                        
T Consensus        63 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------------------------  118 (368)
T 3mmy_A           63 ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN------------------------  118 (368)
T ss_dssp             TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------------------
T ss_pred             CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC------------------------
Confidence            356888887653 3333677889999999999999999999999999999998751                        


Q ss_pred             CCCccceeeeecCccCEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913          408 NGRKRSYTLYQGHSGPVYSASF--SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~--sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                           ......+|...|++++|  +|++.+|++++.||+|++||+.+++.+..+..+. .+.++.+.  +..+++++.++
T Consensus       119 -----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~  190 (368)
T 3mmy_A          119 -----QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAER  190 (368)
T ss_dssp             -----EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGG
T ss_pred             -----CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCC
Confidence                 22335679999999999  8999999999999999999999999998888765 56666665  45889999999


Q ss_pred             cEEEEECCCCceeEEec--ccCCCeeEEEEcCCCCE----EEEEEcCCcEEEEECCCC---cEEEEEecCCC--------
Q 005913          486 TARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNY----IATGSSDKTVRLWDVSSG---ECVRIFIGHRS--------  548 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~----l~tgs~dg~I~iwd~~~~---~~~~~~~~h~~--------  548 (670)
                      .+++|+++.........  .+...+.++++.++...    +++|+.||.|++||++..   ..+..+.+|..        
T Consensus       191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred             cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence            99999998765433322  34456677777665554    999999999999999987   56777777776        


Q ss_pred             ----CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          549 ----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       549 ----~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                          +|++++|+|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|+|.+|++|+.|+..+.|++..
T Consensus       271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             ccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence                799999999999999999999999999999999999999999999999999999999999998766666544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=9.5e-27  Score=249.01  Aligned_cols=261  Identities=14%  Similarity=0.129  Sum_probs=213.7

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ..+++|+.....  ......++..+.+++|+|+++++ ++++.|+.|++||+.+.                         
T Consensus        12 ~~v~v~d~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-------------------------   64 (391)
T 1l0q_A           12 DNISVIDVTSNK--VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-------------------------   64 (391)
T ss_dssp             TEEEEEETTTTE--EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-------------------------
T ss_pred             CEEEEEECCCCe--EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC-------------------------
Confidence            467777654332  22334455679999999999987 67778999999998641                         


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEE-EEEECCCc
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRT  486 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-~s~s~dg~  486 (670)
                         .....+..| ..+.+++|+|++++|+ +++.++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.
T Consensus        65 ---~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           65 ---NVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             ---EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred             ---eEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCE
Confidence               223333334 3899999999999876 45567999999999998888877654 68999999999987 67778999


Q ss_pred             EEEEECCCCceeEEecccCCCeeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      |++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+++++.+..+. +...+.+++|+|+|++|+++
T Consensus       140 v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          140 VSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             EEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEE
Confidence            999999999988888765 567999999999988 567788999999999998887775 45679999999999999988


Q ss_pred             E---CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEE-EEEECCCcEEEEeCCCCcccc
Q 005913          566 D---EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTSTKVL  625 (670)
Q Consensus       566 ~---~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l-~sgs~Dg~I~iwd~~~~~~~~  625 (670)
                      +   .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.++....
T Consensus       218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence            8   68999999999999988888765 47899999999877 677889999999999876543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.6e-29  Score=260.98  Aligned_cols=223  Identities=12%  Similarity=0.052  Sum_probs=184.2

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC---------CCcee
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---------RIQPL  498 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~---------~~~~~  498 (670)
                      .+.+++..|++|+.||+|++||+.+++.+..+.  ...|.++.|+|.   +++++.|++|++|+.+         +++.+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            445678899999999999999999998887776  467888899988   9999999999999765         44444


Q ss_pred             EEec-ccCCCeeEEEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913          499 RIMA-GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       499 ~~~~-~~~~~v~~v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iw  574 (670)
                      ..+. +|...|.+++|+|  +++++++|+.||+|++||+++++++.... .|...|.+++|+|+|.+|++|+.||.|++|
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY  197 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence            4444 6778899999999  99999999999999999999999977764 445589999999999999999999999999


Q ss_pred             eCCCCeee-EEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe--E
Q 005913          575 DLASGRCV-TPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV--Y  650 (670)
Q Consensus       575 Dl~~~~~~-~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~  650 (670)
                      |+++++.+ ..+.. |.++|++++|+|+|.+|++++ |++|++||+.+......            +..+..+..++  .
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------------~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA------------YPTYTIPEFKTGTV  264 (343)
T ss_dssp             ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS------------SCCCBC-----CCE
T ss_pred             ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee------------ecccccccccccce
Confidence            99999888 78887 999999999999999999999 55999999988653211            12222233333  4


Q ss_pred             EEEEecCCcEEEEeeC-CC
Q 005913          651 SLQFSRRNLLFAAGAL-SK  668 (670)
Q Consensus       651 ~l~fs~~~~~La~gs~-dg  668 (670)
                      +++|+|+|.+|++|+. ++
T Consensus       265 ~~~~~~~g~~l~~~s~~d~  283 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESN  283 (343)
T ss_dssp             EEEECTTSSEEEEEETTTT
T ss_pred             EEEECCCCCEEEEecCCCC
Confidence            7999999999999887 54

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=3.1e-28  Score=250.57  Aligned_cols=263  Identities=16%  Similarity=0.129  Sum_probs=198.4

Q ss_pred             cccceecCCCCCCc--eeEEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcE-EEEECCCCCccccccCCCCCCCCCCCcc
Q 005913          328 LRNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDG-SLVAGGFSDSSL-KVWDMAKLGQQAVSSGLQGENDTTPRED  403 (670)
Q Consensus       328 ~~~~~~l~~~~~ps--~~~~t~~~~~~~V~~l~fs~d~-~~La~g~~dg~I-~Iwdl~~~~~~~~~~~~~~~~~~~~~~~  403 (670)
                      ....+.||...-..  .+.|++..|..+|..+.|+||. +++.++-.+=.+ .|+.+.-                     
T Consensus        61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~---------------------  119 (356)
T 2w18_A           61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC---------------------  119 (356)
T ss_dssp             ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC---------------------
T ss_pred             ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE---------------------
Confidence            34567888766542  6788999999999999999974 444444332222 2333221                     


Q ss_pred             ccCCC-CCccceeeeecCccCEEEEEEcCCCCEEEEEe--CCCeEEEEeC-CCCceeEEeeCCCccEeEEEEec---CCC
Q 005913          404 IIGPN-GRKRSYTLYQGHSGPVYSASFSPLGDFILSSS--ADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNP---QGH  476 (670)
Q Consensus       404 ~~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s--~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~l~~sp---~g~  476 (670)
                        +++ ........-.+|...|.++   ++++.+.+++  .|+.|++|++ .+++.+..+.+|...+..++|++   ++.
T Consensus       120 --spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~  194 (356)
T 2w18_A          120 --SSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE  194 (356)
T ss_dssp             --------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred             --CCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence              011 0112223334566666654   5566555544  5999999999 45778888889999999999999   789


Q ss_pred             EEEEEECCCcEEEEECCCCceeEEecccC---CCeeEEEEcCCCCEE------------EEEEcCCcEEEEECCCCcEEE
Q 005913          477 YFASSSHDRTARIWSMDRIQPLRIMAGHL---SDVDCVRWHINCNYI------------ATGSSDKTVRLWDVSSGECVR  541 (670)
Q Consensus       477 ~l~s~s~dg~v~lwd~~~~~~~~~~~~~~---~~v~~v~~~p~~~~l------------~tgs~dg~I~iwd~~~~~~~~  541 (670)
                      +|++|+.|++|++||+.+++.++.+.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..+++.+.
T Consensus       195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence            99999999999999999999999998654   357788999999887            567889999999999999887


Q ss_pred             EE-----ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceE-EEEEcCCCCEEEEEECCCcEEE
Q 005913          542 IF-----IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TLAYSCEGSLLASGSADCTVKL  615 (670)
Q Consensus       542 ~~-----~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~-sl~~s~~g~~l~sgs~Dg~I~i  615 (670)
                      .+     .+|...+.+..++  +.++++|+.||+|+|||+.+++++.++.+|...+. +++|||+|++|++|+.|++|+|
T Consensus       275 v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIkl  352 (356)
T 2w18_A          275 VMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFV  352 (356)
T ss_dssp             EEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred             EEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence            66     3666665555554  88999999999999999999999999999987655 5899999999999999999999


Q ss_pred             EeC
Q 005913          616 WDV  618 (670)
Q Consensus       616 wd~  618 (670)
                      ||+
T Consensus       353 Wd~  355 (356)
T 2w18_A          353 YHY  355 (356)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            995

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=8e-27  Score=249.57  Aligned_cols=256  Identities=13%  Similarity=0.104  Sum_probs=211.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE-EEEeCC
Q 005913          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSAD  442 (670)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L-~s~s~D  442 (670)
                      .++++++.|+.|++||+.+                            ......+.+| ..+.+++|+|++++| ++++.|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~----------------------------~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d   53 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS----------------------------NKVTATIPVG-SNPMGAVISPDGTKVYVANAHS   53 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT----------------------------TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGG
T ss_pred             EEEEEcCCCCEEEEEECCC----------------------------CeEEEEeecC-CCcceEEECCCCCEEEEECCCC
Confidence            4678899999999999875                            2233445555 458999999999977 677789


Q ss_pred             CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE-
Q 005913          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-  520 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-  520 (670)
                      ++|++||+.+++.+..+..+. .+.+++|+|++.++++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++++ 
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY  131 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred             CeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence            999999999999888888666 899999999999886555 6799999999999888887754 578999999999988 


Q ss_pred             EEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE-EEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913          521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (670)
Q Consensus       521 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l-~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~  599 (670)
                      ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+.+++.+..+. +...+.+++|+|
T Consensus       132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~  209 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP  209 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC
Confidence            67778999999999999999888765 457999999999987 567788999999999998887775 456789999999


Q ss_pred             CCCEEEEEE---CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE-EEeeCCC
Q 005913          600 EGSLLASGS---ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF-AAGALSK  668 (670)
Q Consensus       600 ~g~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L-a~gs~dg  668 (670)
                      ++++|++++   .++.|++||+.++..               +..+..+ ..+.+++|+|+|..| ++++.|+
T Consensus       210 ~g~~l~~~~~~~~~~~v~~~d~~~~~~---------------~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~  266 (391)
T 1l0q_A          210 EGTKAYVTNVDKYFNTVSMIDTGTNKI---------------TARIPVG-PDPAGIAVTPDGKKVYVALSFXN  266 (391)
T ss_dssp             TSSEEEEEEECSSCCEEEEEETTTTEE---------------EEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCEEEEEecCcCCCcEEEEECCCCeE---------------EEEEecC-CCccEEEEccCCCEEEEEcCCCC
Confidence            999999888   689999999987643               2233333 357899999999877 5656665

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.2e-28  Score=262.61  Aligned_cols=223  Identities=9%  Similarity=0.044  Sum_probs=184.9

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc-----C
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----P  423 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~  423 (670)
                      .+...|.+++|||||.+||+++.||.|+||+...                              ....+. |..     .
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------------------------------~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------------------------------MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------------------------------EEEECC-CSSCSTTTC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------------------------------eeeecc-CCCcccccc
Confidence            3367899999999999999999999999999542                              223334 444     5


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eEEe----eCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-------~~~~----~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      |.+++|||+|++|++|+.||+|++||+.++..       +..+    .+|...|.+++|+|+|  +++++.|++|++||+
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC
Confidence            99999999999999999999999999998753       4665    5677899999999999  889999999999999


Q ss_pred             CCCce---eEEe-cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE--cCCCCEEEEEE
Q 005913          493 DRIQP---LRIM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM--SPDGRYMASGD  566 (670)
Q Consensus       493 ~~~~~---~~~~-~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~--sp~g~~l~sg~  566 (670)
                      .....   .+.+ .+|...|.+++|+  +++|++++ +++|++||+.+++......+|.+.|..++|  +|++..|++++
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence            88773   3456 4788999999999  68999887 699999999988875555589999999999  99999999999


Q ss_pred             CCCeEEEEeCCC-----------------------CeeeEEeeCCCcceEEEEEcCCCCEEEEEEC
Q 005913          567 EDGTIMMWDLAS-----------------------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSA  609 (670)
Q Consensus       567 ~dg~I~iwDl~~-----------------------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~  609 (670)
                      .||. ++|....                       +..+..+. +...|++++|||||..+|+++.
T Consensus       287 edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          287 KTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence            9999 9998742                       11122222 2456999999999999998873

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.7e-26  Score=249.03  Aligned_cols=259  Identities=12%  Similarity=0.117  Sum_probs=216.0

Q ss_pred             cceecCCCCCCceeEE----EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCcccc
Q 005913          330 NRVHLSSAALPSVSFY----TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII  405 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~----t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~  405 (670)
                      ..+++|+.........    .+..|.+.|++++|++++.++++++.|+.|++|++.+                       
T Consensus       144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-----------------------  200 (433)
T 3bws_A          144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-----------------------  200 (433)
T ss_dssp             SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-----------------------
T ss_pred             CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-----------------------
Confidence            3577777554433221    2336777899999999999999999999999999864                       


Q ss_pred             CCCCCccceeeeecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE--
Q 005913          406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--  482 (670)
Q Consensus       406 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--  482 (670)
                           ......+..|...+.+++|+|+++.++ +++.|+.|++||+.+++.+..+..+. .+.+++|+|+|.++++++  
T Consensus       201 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          201 -----LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             -----CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEE
T ss_pred             -----ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECC
Confidence                 224455667889999999999999885 55579999999999988887777654 589999999999999988  


Q ss_pred             ------CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEE
Q 005913          483 ------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM  555 (670)
Q Consensus       483 ------~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~  555 (670)
                            .|+.|++||+.+++.+..+ .|...+.+++|+|+++++ ++++.++.|++||+.+++.+..+. +...+.+++|
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~  352 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL  352 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred             CCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence                  4889999999998877665 456689999999999765 556889999999999999888775 6778999999


Q ss_pred             cCCCCEEEEEEC---------------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 005913          556 SPDGRYMASGDE---------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVT  619 (670)
Q Consensus       556 sp~g~~l~sg~~---------------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~  619 (670)
                      +|+|++|++++.               ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |++|++|++.
T Consensus       353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            999999998876               57999999999999888876 457899999999999998875 9999999986


Q ss_pred             C
Q 005913          620 T  620 (670)
Q Consensus       620 ~  620 (670)
                      .
T Consensus       432 ~  432 (433)
T 3bws_A          432 G  432 (433)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=3.6e-26  Score=242.44  Aligned_cols=234  Identities=17%  Similarity=0.172  Sum_probs=187.0

Q ss_pred             CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          352 NGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      .++.+++++++++.++ +|+.|+.|+|||+.+.                            .....+. |...|.+++|+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~----------------------------~~~~~~~-~~~~v~~v~~~  109 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK----------------------------QDVSRIK-VDAPVKDLFLS  109 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT----------------------------EEEEEEE-CSSCEEEEEEC
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC----------------------------cEEEEEE-CCCceEEEEEc
Confidence            3688999999988885 6778899999998752                            2223333 66799999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCC-ceeEEeeCCCccEeEEEEecCCCEEEE--EECCCcEEEEECCCCc-----------
Q 005913          431 PLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFAS--SSHDRTARIWSMDRIQ-----------  496 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s--~s~dg~v~lwd~~~~~-----------  496 (670)
                      ++.  ++++ .|+.|++||+.+. +.+..+..   +...+++++  .++++  |+.||.|++||+.++.           
T Consensus       110 ~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~  181 (355)
T 3vu4_A          110 REF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ  181 (355)
T ss_dssp             SSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred             CCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence            753  4444 4789999999987 66555554   455566777  56666  5789999999998765           


Q ss_pred             ----e-eEEecccCCCeeEEEEcCCCCEEEEEEcCCc-EEEEECCCCcEEEEEe-c-CCCCeEEEEEcCCCCEEEEEECC
Q 005913          497 ----P-LRIMAGHLSDVDCVRWHINCNYIATGSSDKT-VRLWDVSSGECVRIFI-G-HRSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       497 ----~-~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~-I~iwd~~~~~~~~~~~-~-h~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                          + +..+.+|...|.+++|+|++++|++|+.||+ |++||+++++++..+. + |...|.+++|+|+|++|++++.|
T Consensus       182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK  261 (355)
T ss_dssp             -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred             cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence                2 7888999999999999999999999999998 9999999999999998 5 99999999999999999999999


Q ss_pred             CeEEEEeCCCCeee--EEee---------------------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          569 GTIMMWDLASGRCV--TPLM---------------------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       569 g~I~iwDl~~~~~~--~~~~---------------------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      |.|++||+..+...  ..+.                     .+......++|+++|+.|++++.||.+++|++..+.
T Consensus       262 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          262 WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            99999999765311  1110                     112234679999999999999999999999986643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.6e-25  Score=230.44  Aligned_cols=270  Identities=11%  Similarity=0.111  Sum_probs=186.7

Q ss_pred             EEEEEEcCCCC---EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          354 LNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       354 V~~l~fs~d~~---~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      +.++.|-.-|-   .++++ ....|++|+.....                         ..+....+.+|..+|..+.+.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~-~~~~v~lw~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~   95 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITA-CEDVVSLWKALDAW-------------------------QWEKLYTWHFAEVPVLQIVPV   95 (356)
T ss_dssp             EEEEEEC----CEEEEEEE-ESSEEEEEEESSSS-------------------------BEEEEEEEECCSSCEEEECCC
T ss_pred             EeeeeeccCCCCccEEEEe-ccceEEEcccCCCc-------------------------cceeeEEEeccCceeEEEEEc
Confidence            66777754332   34455 56789999987521                         124566677777777777777


Q ss_pred             CCCCEEEE-EeCC---CeEEEEeCCCC----ceeEEeeCCCccEeEEEEecCCCEEEEEE--CCCcEEEEEC-CCCceeE
Q 005913          431 PLGDFILS-SSAD---TTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSM-DRIQPLR  499 (670)
Q Consensus       431 p~~~~L~s-~s~D---g~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~dg~v~lwd~-~~~~~~~  499 (670)
                      ||..-|+. +-.+   +.|+..-+...    .......+|...|+++   ++++.+.+++  .|+.|++|++ .+++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~  172 (356)
T 2w18_A           96 PDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE  172 (356)
T ss_dssp             TTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE
T ss_pred             CcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee
Confidence            75432221 1111   01111111111    1222223344445554   4565555543  6899999998 4577788


Q ss_pred             EecccCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCC---CeEEEEEcCCCCEE-----------
Q 005913          500 IMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYM-----------  562 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p---~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~---~I~~l~~sp~g~~l-----------  562 (670)
                      .+.+|...+..++|+|   ++.+|++|+.|++|+|||+.+|++++++.+|..   .+.+++|+|+|.++           
T Consensus       173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~  252 (356)
T 2w18_A          173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKES  252 (356)
T ss_dssp             EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred             eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence            8889999999999999   789999999999999999999999999987543   57788999999986           


Q ss_pred             -EEEECCCeEEEEeCCCCeeeEEe-----eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccc
Q 005913          563 -ASGDEDGTIMMWDLASGRCVTPL-----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL  636 (670)
Q Consensus       563 -~sg~~dg~I~iwDl~~~~~~~~~-----~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  636 (670)
                       ++|+.|++|++||..+++.+..+     .+|...+.+..++  +.++++|+.||+|+|||+.+++.             
T Consensus       253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~-------------  317 (356)
T 2w18_A          253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQC-------------  317 (356)
T ss_dssp             -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSE-------------
T ss_pred             eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcE-------------
Confidence             56889999999999999987765     3676665555544  88999999999999999988753             


Q ss_pred             ccccccCCCCCCeE-EEEEecCCcEEEEeeCCCC
Q 005913          637 RSLKTLPTKSTPVY-SLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       637 ~~~~~~~~~~~~V~-~l~fs~~~~~La~gs~dgs  669 (670)
                        +.++..|...+. .++|+|+|.+|++|+.|++
T Consensus       318 --l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          318 --TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             --EEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             --EEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence              456666766554 6899999999999999987

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=6.4e-26  Score=245.88  Aligned_cols=278  Identities=17%  Similarity=0.118  Sum_probs=220.7

Q ss_pred             ceecCCC--CCCcee-EEEeecCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCCccc
Q 005913          331 RVHLSSA--ALPSVS-FYTFINTHNGLNCASISQ--------------DGSLVAGGFSD------SSLKVWDMAKLGQQA  387 (670)
Q Consensus       331 ~~~l~~~--~~ps~~-~~t~~~~~~~V~~l~fs~--------------d~~~La~g~~d------g~I~Iwdl~~~~~~~  387 (670)
                      .+++|+.  ...... -.++..+...+.++++++              .+..++.++.+      +.|++||+..     
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-----  168 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-----  168 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence            6788887  444321 244667777777777764              25666665554      7999999863     


Q ss_pred             cccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeeCCCc
Q 005913          388 VSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNY  464 (670)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~  464 (670)
                                              .....+.+|...|.+++|+|+|+.|++++.++   .|++||+.+++.. .+..|..
T Consensus       169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~  223 (415)
T 2hqs_A          169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR  223 (415)
T ss_dssp             ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS
T ss_pred             ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC
Confidence                                    13355677899999999999999999999875   9999999988765 4667888


Q ss_pred             cEeEEEEecCCCEEE-EEECCCc--EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-C--cEEEEECCCCc
Q 005913          465 PVWDVQFNPQGHYFA-SSSHDRT--ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGE  538 (670)
Q Consensus       465 ~V~~l~~sp~g~~l~-s~s~dg~--v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g--~I~iwd~~~~~  538 (670)
                      .+.+++|+|+|++|+ +++.++.  |++||+.+++. ..+..|...+.+++|+|+|++|++++.+ +  .|++||+.+++
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            999999999999888 6666654  99999988765 5677788899999999999999988864 4  68888998887


Q ss_pred             EEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC---c
Q 005913          539 CVRIFIGHRSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---T  612 (670)
Q Consensus       539 ~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg---~  612 (670)
                      .. .+..+...+.+++|+|+|++|++++.+   +.|++||+.+++.. .+..|. .+.+++|+|+|++|++++.++   .
T Consensus       303 ~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~  379 (415)
T 2hqs_A          303 PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSV  379 (415)
T ss_dssp             CE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred             EE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccE
Confidence            54 455677789999999999999988764   58999999988764 455554 899999999999999998877   7


Q ss_pred             EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          613 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       613 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      |.+||+....                ...+..+...|.+++|+|..
T Consensus       380 l~~~d~~g~~----------------~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          380 LNLVSTDGRF----------------KARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EEEEETTSCC----------------EEECCCSSSEEEEEEECCCC
T ss_pred             EEEEECCCCc----------------EEEeeCCCCCCcCCcccccc
Confidence            9999987532                34667788899999999964

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.9e-25  Score=242.21  Aligned_cols=270  Identities=14%  Similarity=0.105  Sum_probs=210.7

Q ss_pred             CCEEEEEEcCCCC-EEEEEe----CCC----cEEEEEC--CCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913          352 NGLNCASISQDGS-LVAGGF----SDS----SLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (670)
Q Consensus       352 ~~V~~l~fs~d~~-~La~g~----~dg----~I~Iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (670)
                      ..+...+|++.|. ++++|+    .+|    .|+|||+  .+...                          .....+.+|
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~--------------------------~~~~~~~~~  116 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV--------------------------LAQNSYKVN  116 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE--------------------------EEEEEEEEC
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE--------------------------EeeeEEEcC
Confidence            3567777877764 566775    567    8999998  54211                          112346677


Q ss_pred             ccCEEEEEEcC--------------CCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEE
Q 005913          421 SGPVYSASFSP--------------LGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS  480 (670)
Q Consensus       421 ~~~V~~l~~sp--------------~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s  480 (670)
                      ...+..+++++              .+..++.++.+      ++|++||+. +.....+.+|...+.+++|+|+|++|++
T Consensus       117 ~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~  195 (415)
T 2hqs_A          117 KQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAY  195 (415)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEE
Confidence            77777776664              25666666654      799999998 4566777889999999999999999999


Q ss_pred             EECCC---cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEE-EEEcCCc--EEEEECCCCcEEEEEecCCCCeEEEE
Q 005913          481 SSHDR---TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA-TGSSDKT--VRLWDVSSGECVRIFIGHRSMILSLA  554 (670)
Q Consensus       481 ~s~dg---~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~-tgs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~  554 (670)
                      ++.++   .|++||+.+++.. .+..|...+.+++|+|+|++|+ +++.++.  |++||+.+++. ..+..|...+.+++
T Consensus       196 ~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~  273 (415)
T 2hqs_A          196 VTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPT  273 (415)
T ss_dssp             EECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEE
T ss_pred             EEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceE
Confidence            99885   9999999988775 4566888999999999999888 5655554  99999998876 45677888999999


Q ss_pred             EcCCCCEEEEEECC-C--eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC---CcEEEEeCCCCccccccc
Q 005913          555 MSPDGRYMASGDED-G--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTTSTKVLKTE  628 (670)
Q Consensus       555 ~sp~g~~l~sg~~d-g--~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~  628 (670)
                      |+|+|++|++++.+ |  .|++||+.+++. ..+..|...+.+++|+|+|++|++++.+   +.|++||+.++..     
T Consensus       274 ~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-----  347 (415)
T 2hqs_A          274 WFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----  347 (415)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-----
T ss_pred             ECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-----
Confidence            99999999988864 4  788889988764 4455677789999999999999988864   5899999987542     


Q ss_pred             cccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          629 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                                 ..+..+. .+.+++|+|+|.+|++++.++
T Consensus       348 -----------~~l~~~~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          348 -----------QVLSSTF-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             -----------EECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred             -----------EEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence                       1222332 799999999999999888765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=8.1e-25  Score=222.75  Aligned_cols=256  Identities=18%  Similarity=0.200  Sum_probs=199.8

Q ss_pred             EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEE
Q 005913          368 GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRL  447 (670)
Q Consensus       368 ~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~l  447 (670)
                      .++.++.|++||+.+.                             ....+..|...|.+++|+|++++|++++ ++.|++
T Consensus        17 ~~~~~~~i~~~d~~~~-----------------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~   66 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR-----------------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYR   66 (297)
T ss_dssp             -CCCCEEEEEEETTTT-----------------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEE
T ss_pred             CCCcceeEEEEeCCCC-----------------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEE
Confidence            3457899999998641                             2334566889999999999999999987 789999


Q ss_pred             EeCCC-CceeEEeeCC-CccEeEEEEecCCCEEEEEE--CCCcEEEE--ECCCCceeEEecccCCCeeEEEEcCCCCEEE
Q 005913          448 WSTKL-NANLVCYKGH-NYPVWDVQFNPQGHYFASSS--HDRTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIA  521 (670)
Q Consensus       448 wd~~~-~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s--~dg~v~lw--d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~  521 (670)
                      ||+.+ +........+ ...+.+++|+|+|+++++++  .++...+|  +..++. ...+..+ ..+.+++|+|++++|+
T Consensus        67 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~  144 (297)
T 2ojh_A           67 LSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFT  144 (297)
T ss_dssp             EESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEE
T ss_pred             EeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEE
Confidence            99998 7777666665 46789999999999999999  33455555  445544 4444434 4589999999999887


Q ss_pred             -EEEcCCcEEEEECC-CCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCC-CCeeeEEeeCCCcceEEEEE
Q 005913          522 -TGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAY  597 (670)
Q Consensus       522 -tgs~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl~~  597 (670)
                       +++.++.+++|++. .+.....+..+...+.+++|+|+|++|++++ .++.+.+|++. .+..+..+..|...+.+++|
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  224 (297)
T 2ojh_A          145 YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHP  224 (297)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEE
T ss_pred             EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEE
Confidence             67789999999863 2334455667888999999999999888766 58999999986 56667778888889999999


Q ss_pred             cCCCCEEEEEECC-----------CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          598 SCEGSLLASGSAD-----------CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       598 s~~g~~l~sgs~D-----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      +|+|++|++++.+           +.|.+||+.++..             ..+..+..+...|.+++|+|+|..|++++.
T Consensus       225 s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          225 SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-------------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-------------EEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-------------eeeeccCCCCcccccceECCCCCEEEEEEe
Confidence            9999999988876           5699999987542             123333456678899999999999988877


Q ss_pred             CC
Q 005913          667 SK  668 (670)
Q Consensus       667 dg  668 (670)
                      +.
T Consensus       292 ~~  293 (297)
T 2ojh_A          292 FP  293 (297)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=2e-24  Score=251.30  Aligned_cols=293  Identities=14%  Similarity=0.106  Sum_probs=211.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCCccccccCCCCCCCCCCCccccCCCC-CccceeeeecCccC
Q 005913          351 HNGLNCASISQDGSLVAGGFS-DS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG-RKRSYTLYQGHSGP  423 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~-dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~  423 (670)
                      ...|.+++|||||++||+++. ||     .|++||+.+.............    +......... .......+ .....
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~  110 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLSDEEKARRERQRI-AAMTG  110 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------------------CCEE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----cccccccchhhhhhhhhhh-ccccC
Confidence            456999999999999999988 88     8999999864332211110000    0000000000 00000000 01134


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      |.+++|||||++|++++. ++|++||+.++.  ....+..|...+.+++|+|+|++|++++. +.|++||+.+++.....
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEec
Confidence            788999999999999886 899999999873  44556678888999999999999999874 69999999988776655


Q ss_pred             cccCCC----------------eeEEEEcCCCCEEEEEEcCC---------------------------------cEEEE
Q 005913          502 AGHLSD----------------VDCVRWHINCNYIATGSSDK---------------------------------TVRLW  532 (670)
Q Consensus       502 ~~~~~~----------------v~~v~~~p~~~~l~tgs~dg---------------------------------~I~iw  532 (670)
                      ..+...                +.+++|+|||++|++++.|+                                 .|++|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            444332                47899999999999988776                                 89999


Q ss_pred             ECCC-CcEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEeCCCCeeeEEeeCCCc----ceEEEEEcCC
Q 005913          533 DVSS-GECVRIFI--GHRSMILSLAMSPDGRYMASGDE-----DGTIMMWDLASGRCVTPLMGHTS----CVWTLAYSCE  600 (670)
Q Consensus       533 d~~~-~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~~-----dg~I~iwDl~~~~~~~~~~~h~~----~V~sl~~s~~  600 (670)
                      |+.+ ++......  .|...+.+++| |||++|++++.     ++.|++||+.+++....+..+..    .+.+++|+||
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence            9998 87765543  36778999999 99999997754     57899999999987776665543    4568999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE-EEecCCcEEEEeeC
Q 005913          601 GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL-QFSRRNLLFAAGAL  666 (670)
Q Consensus       601 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~fs~~~~~La~gs~  666 (670)
                      |+++++++.||.++||.+.....               ...+..+...|..+ .|+|+|..|+..+.
T Consensus       348 g~~~~~~~~~g~~~l~~~~~~~~---------------~~~l~~~~~~v~~~~~~s~dg~~l~~~~~  399 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDSKGK---------------AAALTHGNWSVDELLAVDEKAGLAYFRAG  399 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECSSSC---------------EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred             CeEEEEecCCCccEEEEEcCCCC---------------eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence            99999999999988988763211               22344556678887 59999987654443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=7.1e-23  Score=215.13  Aligned_cols=272  Identities=10%  Similarity=0.033  Sum_probs=214.0

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          349 NTHNGLNCASISQDGSLVAGGFS-------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~-------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      .....+..++|+|+++++++++.       ++.|.+||..+..                            ....+. ..
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~----------------------------~~~~~~-~~   88 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE----------------------------VTQAIH-ND   88 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC----------------------------EEEEEE-ES
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe----------------------------EEEEEe-cC
Confidence            34467899999999999988874       5679999987521                            112222 22


Q ss_pred             cCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCcc---------EeEEEEecCCCEEEEEE--CCCcEEE
Q 005913          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYP---------VWDVQFNPQGHYFASSS--HDRTARI  489 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------V~~l~~sp~g~~l~s~s--~dg~v~l  489 (670)
                      ..+.+++|+|++++++ ++..++.|.+||..+++.+..+..+...         +.++.|+|+|.++++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            3467899999999655 4555799999999999888777764422         78899999999887776  4789999


Q ss_pred             EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec----CCCCeEEEEEcCCCCEEEEE
Q 005913          490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~sg  565 (670)
                      ||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+..    +...+.+++|+|+|++++++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence            99999998888876666789999999999999999999999999999998877764    45568899999999987776


Q ss_pred             EC-CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccC
Q 005913          566 DE-DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP  643 (670)
Q Consensus       566 ~~-dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (670)
                      +. ++.|.+||+.+++.+..+..+..  ..++|+|+|+++++++ .++.|.+||..++...               ..+.
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------~~~~  311 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV---------------KTFD  311 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE---------------EEEE
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE---------------EEEe
Confidence            65 49999999999998887765432  5799999999665555 6899999999876432               2222


Q ss_pred             CCCCCeEEEEEecCCcEEEEeeCC
Q 005913          644 TKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       644 ~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      . ...+.+++|+|+|++|+++..+
T Consensus       312 ~-~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          312 T-PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             C-CSEEEEEEECTTSCEEEEEEEC
T ss_pred             c-CCCCCeEEEcCCCCEEEEEEcc
Confidence            2 2357899999999977766655

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=4.4e-23  Score=231.00  Aligned_cols=299  Identities=11%  Similarity=0.088  Sum_probs=226.2

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCCccccccCCCCCCCCCCCccccC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      ...+.+|+...... ..++.... .+.+++|||||++|++++.|+.|++||+  .+                        
T Consensus       158 d~~V~v~D~~t~~~-~~~i~~g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t------------------------  211 (543)
T 1nir_A          158 AGQIALVDGDSKKI-VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKE------------------------  211 (543)
T ss_dssp             GTEEEEEETTTCCE-EEEEECST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSS------------------------
T ss_pred             CCeEEEEECCCceE-EEEEecCc-ccceEEECCCCCEEEEECCCCeEEEEECcCCC------------------------
Confidence            45677776544332 23333233 3999999999999999999999999998  32                        


Q ss_pred             CCCCccceeeeecCccCEEEEEEcC----CCCEEEEEeC-CCeEEEEeCCCCceeEEeeCC-----------CccEeEEE
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSP----LGDFILSSSA-DTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQ  470 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp----~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~l~  470 (670)
                          ......+. +...+.+++|+|    +|++|++++. +++|.+||..+++++..+..+           ...+..+.
T Consensus       212 ----~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          212 ----PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             ----CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             ----CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence                12233333 345679999999    9999998884 899999999999988887653           22688999


Q ss_pred             EecCCCE-EEEEECCCcEEEEECCCCceeE--EecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEec-
Q 005913          471 FNPQGHY-FASSSHDRTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG-  545 (670)
Q Consensus       471 ~sp~g~~-l~s~s~dg~v~lwd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~-  545 (670)
                      ++|++.. +++...++.|.+||+.+.+.+.  .+ .+...+.+++|+|+|+++++++ .+++|.+||+.+++++..+.. 
T Consensus       287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g  365 (543)
T 1nir_A          287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  365 (543)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence            9997665 5566678999999998766544  33 3556788999999999887665 588999999999999988764 


Q ss_pred             ---CCCCeEEEEEcCC-CCEEEEEE-CCCeEEEEeCCC-------CeeeEEeeCCCcceEEEEEcCCCCEEEEEE-----
Q 005913          546 ---HRSMILSLAMSPD-GRYMASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYSCEGSLLASGS-----  608 (670)
Q Consensus       546 ---h~~~I~~l~~sp~-g~~l~sg~-~dg~I~iwDl~~-------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs-----  608 (670)
                         |.+....+ ++|+ |..++++. .|++|.+||+.+       ++++.++.+|.+.+..+.++|+|++|++++     
T Consensus       366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~  444 (543)
T 1nir_A          366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  444 (543)
T ss_dssp             SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred             CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence               55444443 5777 66667765 689999999998       899999999998889999999999999987     


Q ss_pred             --CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          609 --ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       609 --~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                        .+++|.|||+.+.+.......      .....-+..+...+.++.|+|+|..+.++..
T Consensus       445 ~~~~~~v~v~d~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~  498 (543)
T 1nir_A          445 ARISQSVAVFDLKNLDAKYQVLP------IAEWADLGEGAKRVVQPEYNKRGDEVWFSVW  498 (543)
T ss_dssp             HHHHTCEEEEETTCTTSCCEEEC------HHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred             cccCceEEEEECCCCCCCeEEee------chhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence              277999999998764311100      0001113455678999999999999987743

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=1.7e-23  Score=243.50  Aligned_cols=269  Identities=14%  Similarity=0.123  Sum_probs=208.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      .|.+++|||||++|++++. +.|.+|++.+...                          .....+..|...+.+++||||
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~--------------------------~~~~~l~~~~~~~~~~~~SPD  162 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK--------------------------AAVRQLTHGEGFATDAKLSPK  162 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCST--------------------------TSCCBCCCSSSCEEEEEECTT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc--------------------------ceEEEcccCCcccccccCCCC
Confidence            4889999999999999976 9999999875200                          012234567788999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc----------------EeEEEEecCCCEEEEEECCC-----------
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP----------------VWDVQFNPQGHYFASSSHDR-----------  485 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~----------------V~~l~~sp~g~~l~s~s~dg-----------  485 (670)
                      |++|++++. +.|++||+.++........+...                +.++.|+|||++|++++.|+           
T Consensus       163 G~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~  241 (741)
T 2ecf_A          163 GGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV  241 (741)
T ss_dssp             SSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence            999999874 68999999987766554444332                47899999999999998776           


Q ss_pred             ----------------------cEEEEECCC-CceeEEec--ccCCCeeEEEEcCCCCEEEEEEc-----CCcEEEEECC
Q 005913          486 ----------------------TARIWSMDR-IQPLRIMA--GHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS  535 (670)
Q Consensus       486 ----------------------~v~lwd~~~-~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~-----dg~I~iwd~~  535 (670)
                                            .|++||+.+ ++......  .|...+.+++| |+|++|++++.     +..|++||+.
T Consensus       242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred             CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence                                  889999988 77665543  36778999999 99999998764     5689999999


Q ss_pred             CCcEEEEEecCCC----CeEEEEEcCCCCEEEEEECCCeEEEEeCC-CCeeeEEeeCCCcceEEE-EEcCCCCEEEEE-E
Q 005913          536 SGECVRIFIGHRS----MILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTL-AYSCEGSLLASG-S  608 (670)
Q Consensus       536 ~~~~~~~~~~h~~----~I~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h~~~V~sl-~~s~~g~~l~sg-s  608 (670)
                      ++++...+..+..    .+.+++|+|||+++++++.||.+.||.+. .+. ...+..|...|.++ .|+|+|+.|+.. +
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~  399 (741)
T 2ecf_A          321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG  399 (741)
T ss_dssp             TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred             CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence            9998887766553    45689999999999999999987777665 345 77788888888887 599999877554 4


Q ss_pred             CCC--cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          609 ADC--TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       609 ~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      .++  .++||++.....              .+..+.. ...+.+++|+|+|..|+....
T Consensus       400 ~~~~~~~~l~~~~~~g~--------------~~~~l~~-~~~~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          400 IESARESQIYAVPLQGG--------------QPQRLSK-APGMHSASFARNASVYVDSWS  444 (741)
T ss_dssp             SSCTTCBEEEEEETTCC--------------CCEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred             CCCCceEEEEEEEcCCC--------------Ceeeccc-CCCceEEEECCCCCEEEEEec
Confidence            455  899999864221              1122222 456889999999998887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.2e-22  Score=212.14  Aligned_cols=265  Identities=10%  Similarity=0.136  Sum_probs=190.2

Q ss_pred             ccceecCCCC-CCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          329 RNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       329 ~~~~~l~~~~-~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      ...+++|... ...........+...+.+++|+|++++|++++.+ +.|.+|++....                      
T Consensus        14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~----------------------   71 (343)
T 1ri6_A           14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD----------------------   71 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT----------------------
T ss_pred             CCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC----------------------
Confidence            3466777542 2233344455677789999999999999988876 999999986210                      


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC-CCeEEEEeCC---CCceeEEeeCCCccEeEEEEecCCCEEEEEE
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTK---LNANLVCYKGHNYPVWDVQFNPQGHYFASSS  482 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~---~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s  482 (670)
                        +.......+..+. .+.+++|+|++++|++++. ++.|.+||+.   .......+..+ ..+.+++|+|+|.++++++
T Consensus        72 --~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~  147 (343)
T 1ri6_A           72 --GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPA  147 (343)
T ss_dssp             --CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEE
T ss_pred             --CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEec
Confidence              0111222333333 7889999999998876664 8899999994   33344444443 4588999999999888887


Q ss_pred             -CCCcEEEEECCC-CceeE----Eec-ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC--CcE--EEEEe----cC
Q 005913          483 -HDRTARIWSMDR-IQPLR----IMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS--GEC--VRIFI----GH  546 (670)
Q Consensus       483 -~dg~v~lwd~~~-~~~~~----~~~-~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~--~~~--~~~~~----~h  546 (670)
                       .++.|.+||+.+ ++...    .+. .....+.+++|+|+++++++++ .++.|.+||+..  ++.  ...+.    ++
T Consensus       148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~  227 (343)
T 1ri6_A          148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  227 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence             899999999987 54432    222 2345788999999999876655 789999999953  433  22222    11


Q ss_pred             --CCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCC--C--CeeeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 005913          547 --RSMILSLAMSPDGRYMASG-DEDGTIMMWDLA--S--GRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDV  618 (670)
Q Consensus       547 --~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~--~--~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~  618 (670)
                        ...+.+++|+|+|++|+++ ..++.|.+||+.  +  .+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++
T Consensus       228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence              2356789999999988754 478999999998  2  345555555544 88999999999888887 6899999976


Q ss_pred             CC
Q 005913          619 TT  620 (670)
Q Consensus       619 ~~  620 (670)
                      ..
T Consensus       307 d~  308 (343)
T 1ri6_A          307 VG  308 (343)
T ss_dssp             ET
T ss_pred             cC
Confidence            53

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.2e-22  Score=227.43  Aligned_cols=267  Identities=11%  Similarity=0.107  Sum_probs=212.1

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-cCccCEEEEEEcCCCCEE
Q 005913          358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVYSASFSPLGDFI  436 (670)
Q Consensus       358 ~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~L  436 (670)
                      .|+|++.++++++.+++|.+||..+.                            .....+. ++.  +.+++|+|+|++|
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~----------------------------~~~~~i~~g~~--~~~v~~spdg~~l  193 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK----------------------------KIVKVIDTGYA--VHISRMSASGRYL  193 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC----------------------------CEEEEEECSTT--EEEEEECTTSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc----------------------------eEEEEEecCcc--cceEEECCCCCEE
Confidence            37889999999999999999998752                            2333444 333  8899999999999


Q ss_pred             EEEeCCCeEEEEeC--CCCceeEEeeCCCccEeEEEEec----CCCEEEEEE-CCCcEEEEECCCCceeEEeccc-----
Q 005913          437 LSSSADTTIRLWST--KLNANLVCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARIWSMDRIQPLRIMAGH-----  504 (670)
Q Consensus       437 ~s~s~Dg~I~lwd~--~~~~~~~~~~~h~~~V~~l~~sp----~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~-----  504 (670)
                      ++++.|++|++||+  .+++.+..+.. ...+..++|+|    +|+++++++ .+++|.+||..+++++..+..+     
T Consensus       194 ~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~  272 (543)
T 1nir_A          194 LVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD  272 (543)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred             EEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence            99999999999999  78888888874 44579999999    999999988 4899999999999998887642     


Q ss_pred             -----C-CCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEE--EEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005913          505 -----L-SDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMW  574 (670)
Q Consensus       505 -----~-~~v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iw  574 (670)
                           . ..+.++.++|++.. +++...++.|.+||+.+++.+.  .+ .+...+.+++|+|+|+++++++ .++.|.+|
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~  351 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVI  351 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence                 2 36889999997765 4556678999999998876543  33 4566788999999999877654 68999999


Q ss_pred             eCCCCeeeEEeeC----CCcceEEEEEcCC-CCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913          575 DLASGRCVTPLMG----HTSCVWTLAYSCE-GSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP  648 (670)
Q Consensus       575 Dl~~~~~~~~~~~----h~~~V~sl~~s~~-g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (670)
                      |..+++++..+..    |.+....+ ++|+ +.+++++. .|++|.+||+.+...        ....+..+.++..+...
T Consensus       352 D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--------~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          352 DSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--------PQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             ETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--------TTTBTSEEEEEECSCSC
T ss_pred             ECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--------chhcCeEEEEEEcCCCC
Confidence            9999999888774    65544444 4676 66777775 689999999987321        11123567788888888


Q ss_pred             eEEEEEecCCcEEEEee
Q 005913          649 VYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       649 V~~l~fs~~~~~La~gs  665 (670)
                      +..++|+|+++.|++++
T Consensus       423 ~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             CCCEECCTTCCEEEECC
T ss_pred             ceEEEcCCCCCcEEEec
Confidence            99999999999999987

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=2.5e-22  Score=209.40  Aligned_cols=275  Identities=12%  Similarity=0.099  Sum_probs=195.4

Q ss_pred             EEEcCCCCE-EEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913          357 ASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (670)
Q Consensus       357 l~fs~d~~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (670)
                      ..|++++++ ++++..++.|.+||+.+.                            ........+...+ +++|+|++++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~-~~~~s~dg~~   53 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTL----------------------------EILNQITLGYDFV-DTAITSDCSN   53 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTC----------------------------CEEEEEECCCCEE-EEEECSSSCE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccc----------------------------ceeeeEEccCCcc-eEEEcCCCCE
Confidence            345666555 667788999999998752                            1223333445556 9999999997


Q ss_pred             EEEEeC-CCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCC---cEEEEECCCCceeEEecccCCCeeE
Q 005913          436 ILSSSA-DTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDR---TARIWSMDRIQPLRIMAGHLSDVDC  510 (670)
Q Consensus       436 L~s~s~-Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg---~v~lwd~~~~~~~~~~~~~~~~v~~  510 (670)
                      +++++. ++.|++||+.++.. ...+..+..+..+++|+|+|++++++..++   .|.+||+.+++.+..+..+ ....+
T Consensus        54 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~  132 (331)
T 3u4y_A           54 VVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG  132 (331)
T ss_dssp             EEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred             EEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence            776665 89999999998887 777777777776699999999999555553   8999999999888877644 56789


Q ss_pred             EEEcCCCCEEEEE-EcCCc-EEEEECCCCcEE----EEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCee--
Q 005913          511 VRWHINCNYIATG-SSDKT-VRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC--  581 (670)
Q Consensus       511 v~~~p~~~~l~tg-s~dg~-I~iwd~~~~~~~----~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~--  581 (670)
                      ++|+|+|++++++ ..++. |.+|++.....+    .........+.+++|+|+|+++++++ .++.|.+||+.+++.  
T Consensus       133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT  212 (331)
T ss_dssp             EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence            9999999866655 45588 999998764433    12223445689999999999665554 689999999999888  


Q ss_pred             -eEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913          582 -VTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  659 (670)
Q Consensus       582 -~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~  659 (670)
                       +..+..+ ..+..++|+|+|++|++++ .++.|.+||+.++..........      .+...+.....+..++|+|+|.
T Consensus       213 ~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~spdg~  285 (331)
T 3u4y_A          213 LLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH------GLLIDPRPLFGANQMALNKTET  285 (331)
T ss_dssp             EEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC------CCCCCCGGGTTCCCEEECTTSS
T ss_pred             eeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc------ccccCCCCcccccceEECCCCC
Confidence             7776644 5678999999999776654 57889999998865411100000      0000011111235689999999


Q ss_pred             EEEEeeCCC
Q 005913          660 LFAAGALSK  668 (670)
Q Consensus       660 ~La~gs~dg  668 (670)
                      .|++++.++
T Consensus       286 ~l~v~~~~~  294 (331)
T 3u4y_A          286 KLFISANIS  294 (331)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEecCCC
Confidence            887776654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=8.6e-23  Score=236.71  Aligned_cols=299  Identities=14%  Similarity=0.108  Sum_probs=211.7

Q ss_pred             cceecCCCCCCceeEEEeecCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCccccccCCCCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLVAGGFSD---------SSLKVWDMAKLGQQAVSSGLQGEND  397 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~---~V~~l~fs~d~~~La~g~~d---------g~I~Iwdl~~~~~~~~~~~~~~~~~  397 (670)
                      ..+++|+........ .+..+..   .|.+++|||||++||+++.+         +.|.+||+.+...            
T Consensus        37 g~i~~~d~~~g~~~~-~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------  103 (723)
T 1xfd_A           37 GTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------------  103 (723)
T ss_dssp             SCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------------
T ss_pred             CCEEEEECCCCcEEE-EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce------------
Confidence            367788765543322 2333332   49999999999999999764         7788999875221            


Q ss_pred             CCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccE-----------
Q 005913          398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV-----------  466 (670)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V-----------  466 (670)
                                    ..+....+|...+.+++|||||+.|+.++. +.|++|++.++........+...+           
T Consensus       104 --------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~  168 (723)
T 1xfd_A          104 --------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (723)
T ss_dssp             --------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             --------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence                          111112245556888999999999999886 799999999887776665544333           


Q ss_pred             -------eEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCceeEEeccc-
Q 005913          467 -------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPLRIMAGH-  504 (670)
Q Consensus       467 -------~~l~~sp~g~~l~s~s~dg----------------------------------~v~lwd~~~~~~~~~~~~~-  504 (670)
                             .+++|+|||++|++++.|+                                  .|++||+.+++....+..+ 
T Consensus       169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~  248 (723)
T 1xfd_A          169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD  248 (723)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred             EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence                   7899999999999987653                                  7999999988766666654 


Q ss_pred             -----CCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEEEecC-CCCe----EEEEEcCCCCEEEE--EECC
Q 005913          505 -----LSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGH-RSMI----LSLAMSPDGRYMAS--GDED  568 (670)
Q Consensus       505 -----~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~~~~h-~~~I----~~l~~sp~g~~l~s--g~~d  568 (670)
                           ...+.+++|+|||+++++.+..    ..|++||+.++++...+..+ .+.+    .+++|+|||+.|+.  +..+
T Consensus       249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  328 (723)
T 1xfd_A          249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ  328 (723)
T ss_dssp             CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred             cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence                 5678999999999988776543    57999999999987766543 3443    37899999997765  4566


Q ss_pred             C------eEEEEe-CCCCe--eeEEeeCCCcceEE-EEEcCCCCEEEEEECC---CcEEEEeCCCCccccccccccCCcc
Q 005913          569 G------TIMMWD-LASGR--CVTPLMGHTSCVWT-LAYSCEGSLLASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNR  635 (670)
Q Consensus       569 g------~I~iwD-l~~~~--~~~~~~~h~~~V~s-l~~s~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~  635 (670)
                      |      .|.+|| ...+.  +...+..+...+.. ++|+|+|+.|+..+.+   +.+++|++......          .
T Consensus       329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~----------~  398 (723)
T 1xfd_A          329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF----------N  398 (723)
T ss_dssp             SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC----------C
T ss_pred             CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC----------C
Confidence            7      577788 34444  14555544444554 6999999999876665   78999998754310          0


Q ss_pred             cccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          636 LRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       636 ~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      ...+..-..+...+..++|+|+|+.|+....
T Consensus       399 ~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          399 RQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             CBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             cceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            0111110014556889999999998887543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.5e-22  Score=234.13  Aligned_cols=267  Identities=16%  Similarity=0.164  Sum_probs=203.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..|.+++|||| ..++.+ .++.|++||+.+.                             ....+..+.+.+.+++|||
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~-----------------------------~~~~l~~~~~~~~~~~~Sp  130 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR-----------------------------KVTYLFDTNEETASLDFSP  130 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT-----------------------------EEEEEECCTTCCTTCEECT
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCC-----------------------------ceEEccCCcccccCCcCCC
Confidence            56999999999 666666 4599999998641                             2233445667788899999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-----CceeEEeeCCCcc--------------EeEEEEecCCCEEEEEE----------
Q 005913          432 LGDFILSSSADTTIRLWSTKL-----NANLVCYKGHNYP--------------VWDVQFNPQGHYFASSS----------  482 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~~h~~~--------------V~~l~~sp~g~~l~s~s----------  482 (670)
                      +|+.|+++ .++.|++|++.+     ++.......+...              +.++.|+|||++|++++          
T Consensus       131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~  209 (706)
T 2z3z_A          131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP  209 (706)
T ss_dssp             TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred             CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence            99999985 679999999998     7665544443332              48999999999999998          


Q ss_pred             -----------------------CCCcEEEEECCCCceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCC-----cEEEE
Q 005913          483 -----------------------HDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDK-----TVRLW  532 (670)
Q Consensus       483 -----------------------~dg~v~lwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg-----~I~iw  532 (670)
                                             .+..|++||+.+++......  .|...+.+++|+|+|++|++++.++     .|++|
T Consensus       210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~  289 (706)
T 2z3z_A          210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY  289 (706)
T ss_dssp             EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence                                   44689999999887655443  4667799999999999999988776     89999


Q ss_pred             ECCCCcEEEEEe-c-CCC---CeEEEEEcC--CCCEEEEEECCCeEEEEeCC-CCeeeEEeeCCCcceEE-EEEcCCCCE
Q 005913          533 DVSSGECVRIFI-G-HRS---MILSLAMSP--DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWT-LAYSCEGSL  603 (670)
Q Consensus       533 d~~~~~~~~~~~-~-h~~---~I~~l~~sp--~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h~~~V~s-l~~s~~g~~  603 (670)
                      |+.+++....+. . +..   .+.+++|+|  +|+++++++.||.+++|++. ++..+..+..|...+.+ ++|+|+|+.
T Consensus       290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~  369 (706)
T 2z3z_A          290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTR  369 (706)
T ss_dssp             ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred             ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCE
Confidence            999994443332 2 222   246789999  99999999999999999886 67777888888888877 799999998


Q ss_pred             EEEEECC-C----cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          604 LASGSAD-C----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       604 l~sgs~D-g----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      |+.++.+ +    .|..||+.++..                ..+ ++...+.+++|+|+|..++.++.+
T Consensus       370 l~~~~~~~~~~~~~l~~~d~~~~~~----------------~~l-~~~~~~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          370 LYFESTEASPLERHFYCIDIKGGKT----------------KDL-TPESGMHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             EEEEESSSCTTCBEEEEEETTCCCC----------------EES-CCSSSEEEEEECTTSSEEEEEEEC
T ss_pred             EEEEecCCCCceEEEEEEEcCCCCc----------------eec-cCCCceEEEEECCCCCEEEEEecC
Confidence            7766554 3    556666655321                112 244568999999999988876544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=7.1e-23  Score=208.29  Aligned_cols=250  Identities=16%  Similarity=0.137  Sum_probs=191.5

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCccccccCCCCCCCCCCCccccCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK-LGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      ...+++|+.......  .+..+...|.+++|+|||++|++++ ++.|.+|++.+ ...                      
T Consensus        21 ~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~----------------------   75 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP----------------------   75 (297)
T ss_dssp             CEEEEEEETTTTEEE--EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC----------------------
T ss_pred             ceeEEEEeCCCCcee--eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc----------------------
Confidence            456777765544433  4556788899999999999999986 88999999874 221                      


Q ss_pred             CCCccceeeeecC-ccCEEEEEEcCCCCEEEEEe--CCCeEEEE--eCCCCceeEEeeCCCccEeEEEEecCCCEEE-EE
Q 005913          408 NGRKRSYTLYQGH-SGPVYSASFSPLGDFILSSS--ADTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SS  481 (670)
Q Consensus       408 ~~~~~~~~~~~~h-~~~V~~l~~sp~~~~L~s~s--~Dg~I~lw--d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~  481 (670)
                            .....+| ...|.+++|+|++++|++++  .++.+.||  ++.++. ...+..+. .+..++|+|++++++ ++
T Consensus        76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~  147 (297)
T 2ojh_A           76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCG  147 (297)
T ss_dssp             ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEE
T ss_pred             ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEE
Confidence                  1112233 36788999999999999998  33445555  555444 34444433 488999999999887 77


Q ss_pred             ECCCcEEEEECCC-CceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECC-CCcEEEEEecCCCCeEEEEEcCC
Q 005913          482 SHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPD  558 (670)
Q Consensus       482 s~dg~v~lwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~-~~~~~~~~~~h~~~I~~l~~sp~  558 (670)
                      +.++.+++|+++. ......+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+.+++|+|+
T Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d  227 (297)
T 2ojh_A          148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS  227 (297)
T ss_dssp             EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT
T ss_pred             CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC
Confidence            8899999998642 234456667888999999999999888776 58999999986 56667777788888999999999


Q ss_pred             CCEEEEEECC-----------CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913          559 GRYMASGDED-----------GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC  611 (670)
Q Consensus       559 g~~l~sg~~d-----------g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg  611 (670)
                      |++|++++.+           +.|++||+.+++.  +..+.+|...+.+++|+|+|++|++++.+.
T Consensus       228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            9999988765           5699999988765  444557888999999999999998887664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1.9e-23  Score=242.16  Aligned_cols=271  Identities=10%  Similarity=0.091  Sum_probs=199.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc---CEEEEEE
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASF  429 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~  429 (670)
                      .+.+++|||||+++++ +.||.|++||+.+..                            ....+.+|..   .|.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~----------------------------~~~~~~~~~~~~~~v~~~~~   68 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT----------------------------STVLIEGKKIESLRAIRYEI   68 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC----------------------------CEEEECTTTTTTTTCSEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCc----------------------------EEEEeccccccccccceEEE
Confidence            3677899999998876 689999999987521                            2233344443   4899999


Q ss_pred             cCCCCEEEEEeCC---------CeEEEEeCCCCceeEEee---CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913          430 SPLGDFILSSSAD---------TTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       430 sp~~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      ||||++|++++.+         +.|++||+.+++. ..+.   +|...+..++|||+|++|++++. +.|++||+.+++.
T Consensus        69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~  146 (723)
T 1xfd_A           69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA  146 (723)
T ss_dssp             CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred             CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence            9999999999874         7888999998876 3333   34445889999999999999986 7999999999888


Q ss_pred             eEEecccCCCe------------------eEEEEcCCCCEEEEEEcCC--------------------------------
Q 005913          498 LRIMAGHLSDV------------------DCVRWHINCNYIATGSSDK--------------------------------  527 (670)
Q Consensus       498 ~~~~~~~~~~v------------------~~v~~~p~~~~l~tgs~dg--------------------------------  527 (670)
                      ......+...+                  .+++|+|+|++|++++.|+                                
T Consensus       147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  226 (723)
T 1xfd_A          147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP  226 (723)
T ss_dssp             EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred             EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence            77766544433                  7899999999999987653                                


Q ss_pred             --cEEEEECCCCcEEEEEecC------CCCeEEEEEcCCCCEEEEEEC----CCeEEEEeCCCCeeeEEeeC-CCcceE-
Q 005913          528 --TVRLWDVSSGECVRIFIGH------RSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGRCVTPLMG-HTSCVW-  593 (670)
Q Consensus       528 --~I~iwd~~~~~~~~~~~~h------~~~I~~l~~sp~g~~l~sg~~----dg~I~iwDl~~~~~~~~~~~-h~~~V~-  593 (670)
                        .|++||+.+++....+..+      ...+.+++|||||++|++...    +..|++||+.++++...+.. +.+.+. 
T Consensus       227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  306 (723)
T 1xfd_A          227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR  306 (723)
T ss_dssp             EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEec
Confidence              7999999998865666554      567899999999999877653    35799999999987665543 334443 


Q ss_pred             ---EEEEcCCCCEEEE--EECCC------cEEEEeC-CCCccccccccccCCcccccccccCCCCCCeEE-EEEecCCcE
Q 005913          594 ---TLAYSCEGSLLAS--GSADC------TVKLWDV-TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS-LQFSRRNLL  660 (670)
Q Consensus       594 ---sl~~s~~g~~l~s--gs~Dg------~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~fs~~~~~  660 (670)
                         +++|+|||+.|+.  +..++      .|.+||+ ..+..             .....+......+.. ++|+|+|+.
T Consensus       307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------------~~~~~l~~~~~~~~~~~~~spdg~~  373 (723)
T 1xfd_A          307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-------------DNIQSITSGDWDVTKILAYDEKGNK  373 (723)
T ss_dssp             CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-------------CCCCBSCCSSSCEEEEEEEETTTTE
T ss_pred             cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-------------cceeEeecCCeEEEeeeEEcCCCCE
Confidence               7899999997664  45677      4666663 33210             001122223334554 699999999


Q ss_pred             EEEeeCC
Q 005913          661 FAAGALS  667 (670)
Q Consensus       661 La~gs~d  667 (670)
                      |+..+.+
T Consensus       374 l~~~~~~  380 (723)
T 1xfd_A          374 IYFLSTE  380 (723)
T ss_dssp             EEEEESS
T ss_pred             EEEEEcC
Confidence            8766654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=3.6e-22  Score=208.48  Aligned_cols=262  Identities=13%  Similarity=0.186  Sum_probs=187.2

Q ss_pred             EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC-C
Q 005913          365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-T  443 (670)
Q Consensus       365 ~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D-g  443 (670)
                      ++++++.++.|++|++...+.                         . .......|...+.+++|+|++++|++++.+ +
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~-------------------------~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~   60 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGA-------------------------L-TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF   60 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC-------------------------E-EEEEEEECSSCCCCEEECTTSSEEEEEETTTT
T ss_pred             EEEeCCCCCeEEEEEECCCCc-------------------------E-EEeeeEecCCCCceEEECCCCCEEEEeecCCC
Confidence            444557899999999863110                         1 112223567788999999999999888876 9


Q ss_pred             eEEEEeCC--CCc--eeEEeeCCCccEeEEEEecCCCEEEEEEC-CCcEEEEECC---CCceeEEecccCCCeeEEEEcC
Q 005913          444 TIRLWSTK--LNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHI  515 (670)
Q Consensus       444 ~I~lwd~~--~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~---~~~~~~~~~~~~~~v~~v~~~p  515 (670)
                      .|.+|++.  ++.  .+..+..+. .+.+++|+|+|.++++++. ++.|.+||+.   ..+....+..+ ..+.+++|+|
T Consensus        61 ~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~  138 (343)
T 1ri6_A           61 RVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP  138 (343)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred             eEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence            99999997  444  334455444 7889999999998877765 7899999994   33444555433 5689999999


Q ss_pred             CCCEEEEEE-cCCcEEEEECCC-CcEEE----EEec-CCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCC--Cee--eE
Q 005913          516 NCNYIATGS-SDKTVRLWDVSS-GECVR----IFIG-HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS--GRC--VT  583 (670)
Q Consensus       516 ~~~~l~tgs-~dg~I~iwd~~~-~~~~~----~~~~-h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~--~~~--~~  583 (670)
                      +++++++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|+|+++++++ .++.|.+||+..  +..  ..
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~  218 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ  218 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence            999988887 899999999987 65432    2222 345788999999999776655 889999999953  432  22


Q ss_pred             Eee----CC--CcceEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          584 PLM----GH--TSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       584 ~~~----~h--~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                      .+.    ++  ...+.+++|+|+|++|+++ ..++.|.+|++......           ...+..++.... +.+++|+|
T Consensus       219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----------~~~~~~~~~~~~-~~~~~~s~  286 (343)
T 1ri6_A          219 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----------LSKEGFQPTETQ-PRGFNVDH  286 (343)
T ss_dssp             EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----------EEEEEEEECSSS-CCCEEECT
T ss_pred             eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-----------eEEeeeecCCCc-cceEEECC
Confidence            222    11  2356789999999887754 47899999999742110           112333333333 88999999


Q ss_pred             CCcEEEEeeC
Q 005913          657 RNLLFAAGAL  666 (670)
Q Consensus       657 ~~~~La~gs~  666 (670)
                      +|.+|++++.
T Consensus       287 dg~~l~~~~~  296 (343)
T 1ri6_A          287 SGKYLIAAGQ  296 (343)
T ss_dssp             TSSEEEEECT
T ss_pred             CCCEEEEecC
Confidence            9998887774

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=1.2e-22  Score=229.66  Aligned_cols=259  Identities=11%  Similarity=0.018  Sum_probs=197.0

Q ss_pred             CEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCEEEEEEc
Q 005913          353 GLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFS  430 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s  430 (670)
                      +|.+++|+|||++||.++. ||+++||++.+.                             ....+..|. ..|.+++|+
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-----------------------------~~~~lt~~~~~~~~~~~~s   73 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-----------------------------ETVKLNREPINSVLDPHYG   73 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETT-----------------------------EEEECCSSCCSEECEECTT
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCC-----------------------------CcEeeecccccccccccCC
Confidence            5999999999999998876 999999997431                             223334444 689999999


Q ss_pred             CCCCEEEEEeC---CCeEEEEeCCC--CceeEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEeccc
Q 005913          431 PLGDFILSSSA---DTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       431 p~~~~L~s~s~---Dg~I~lwd~~~--~~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      |+ +.+++++.   +...++|.+..  ......+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++.......+
T Consensus        74 pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~  151 (582)
T 3o4h_A           74 VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP  151 (582)
T ss_dssp             CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES
T ss_pred             CC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC
Confidence            99 77777765   45566655443  22222333222 3446688888753 333344455569999988766655433


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--eEEEEeCCC
Q 005913          505 LSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLAS  578 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg--~I~iwDl~~  578 (670)
                      .   .+++|+|+|++|++++.+    +.|++||+.+++.. .+..|.+.+.+++|||||++|+++..+|  .|++||+.+
T Consensus       152 ~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          152 G---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD  227 (582)
T ss_dssp             S---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred             C---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence            3   889999999999988877    78999999988865 5678888899999999999999888888  899999999


Q ss_pred             CeeeEEeeCCCcceEEEE--------EcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeE
Q 005913          579 GRCVTPLMGHTSCVWTLA--------YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVY  650 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~--------~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  650 (670)
                      ++.. .+.+|...+.+++        |+|||.++++++.||++++|++  +..               +.   .....|.
T Consensus       228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~---------------~~---~~~~~v~  286 (582)
T 3o4h_A          228 GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER---------------VE---APQGNHG  286 (582)
T ss_dssp             CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE---------------EC---CCSSEEE
T ss_pred             CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe---------------ec---cCCCceE
Confidence            8887 7778887777777        9999999999999999999999  321               11   1225688


Q ss_pred             EEEEecCCcEEEEeeCCC
Q 005913          651 SLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       651 ~l~fs~~~~~La~gs~dg  668 (670)
                      +++|+ +|.++++++.+.
T Consensus       287 ~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          287 RVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             EEEEE-TTEEEEEEEETT
T ss_pred             EEEec-CCEEEEEEcCCC
Confidence            99999 999998887664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=4e-22  Score=240.94  Aligned_cols=273  Identities=12%  Similarity=0.127  Sum_probs=220.7

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      ..+.+|...+.++.|+++ .+++++..+|.++||.+...+                           .....+..|. .+
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g---------------------------~~~~~l~~~~-~~  247 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG---------------------------KDLRKHTSFT-DY  247 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS---------------------------CSCEECCCCC-SS
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC---------------------------CcceEecCCC-Cc
Confidence            344778889999999998 677788889999999875311                           1122333343 35


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-----------CCccEeEEEEe-cCCCEEEEEECCCcEEEEEC
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----------HNYPVWDVQFN-PQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----------h~~~V~~l~~s-p~g~~l~s~s~dg~v~lwd~  492 (670)
                      ...+|+|+|+.|++++ ++.|++|++... .+..+.+           |...+.+++|+ |+|+++++++ ++.+.+|++
T Consensus       248 ~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~  324 (1045)
T 1k32_A          248 YPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV  324 (1045)
T ss_dssp             CEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred             ceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence            6779999999998874 899999999543 3445444           34468999999 9999999988 789999999


Q ss_pred             CCCceeEEecccCC-CeeEEEEcCCCCEEEEEEcCCcEE-EEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913          493 DRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVR-LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       493 ~~~~~~~~~~~~~~-~v~~v~~~p~~~~l~tgs~dg~I~-iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                      ..+... .+..|.. .+.+++|+ +|+.|++++.++.+. +||+.+++.... .+|...+.+++|||+|++|++++.++.
T Consensus       325 ~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~  401 (1045)
T 1k32_A          325 SGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFE  401 (1045)
T ss_dssp             TSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCe
Confidence            887654 4566777 89999999 999999999888899 999988776544 478889999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC----------cEEEEeCCCCccccccccccCCccccccc
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC----------TVKLWDVTTSTKVLKTEEKSGTNRLRSLK  640 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  640 (670)
                      |++||+.+++......+|.+.+.+++|||||++|++++.++          .|++||+.++.                +.
T Consensus       402 v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----------------~~  465 (1045)
T 1k32_A          402 IMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----------------IF  465 (1045)
T ss_dssp             EEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----------------EE
T ss_pred             EEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc----------------EE
Confidence            99999999988877778999999999999999999887654          89999998753                22


Q ss_pred             ccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          641 TLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       641 ~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      .+..+...+.+++|+|+|+.|++++.++
T Consensus       466 ~l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          466 AATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             ECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             EeeCCCcccCCceEcCCCCEEEEEeccc
Confidence            3445566788999999999999888754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=3.5e-21  Score=200.75  Aligned_cols=262  Identities=11%  Similarity=0.068  Sum_probs=190.1

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ..+.+|+........ .+..+...+ +++|+|||+++++++. ++.|.+||+.+...                       
T Consensus        20 ~~v~~~d~~~~~~~~-~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-----------------------   74 (331)
T 3u4y_A           20 RRISFFSTDTLEILN-QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-----------------------   74 (331)
T ss_dssp             TEEEEEETTTCCEEE-EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-----------------------
T ss_pred             CeEEEEeCcccceee-eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-----------------------
Confidence            466677654443322 223334456 9999999997766655 88999999875211                       


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECC
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHD  484 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~d  484 (670)
                          ....+..+..++.+++|+|++++|+++..++   .|.+||+.+++.+..+..+. ...+++|+|+|++++++ ..+
T Consensus        75 ----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~  149 (331)
T 3u4y_A           75 ----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSS  149 (331)
T ss_dssp             ----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETT
T ss_pred             ----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCC
Confidence                1344555666666699999999999655553   89999999988887776544 46899999999865555 555


Q ss_pred             Cc-EEEEECCCCcee----EEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcE---EEEEecCCCCeEEEEE
Q 005913          485 RT-ARIWSMDRIQPL----RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAM  555 (670)
Q Consensus       485 g~-v~lwd~~~~~~~----~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~  555 (670)
                      +. +.+|+++....+    .........+.+++|+|+|+++++++ .++.|++||+.+++.   +..+..+ ..+.+++|
T Consensus       150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~  228 (331)
T 3u4y_A          150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVV  228 (331)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEE
T ss_pred             CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEE
Confidence            88 999998754333    11223445689999999999776655 688999999999988   7777644 66789999


Q ss_pred             cCCCCEEEEEE-CCCeEEEEeCCCCee--eEEeeCC----Ccc---eEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCc
Q 005913          556 SPDGRYMASGD-EDGTIMMWDLASGRC--VTPLMGH----TSC---VWTLAYSCEGSLLASGSA-DCTVKLWDVTTST  622 (670)
Q Consensus       556 sp~g~~l~sg~-~dg~I~iwDl~~~~~--~~~~~~h----~~~---V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~~~~  622 (670)
                      +|+|++|++++ .++.|.+||+.+++.  +..+..+    ...   +..++|+|+|++|++++. ++.|.+||+....
T Consensus       229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            99999776654 578899999999877  4443322    222   245899999998866655 5699999998753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=1.5e-21  Score=235.90  Aligned_cols=288  Identities=11%  Similarity=0.047  Sum_probs=221.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc-
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-  430 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-  430 (670)
                      ..+.+.+|||||++||.+ .++.|.+|++...... .   ....              ..........|...+.+++|+ 
T Consensus       245 ~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~---l~~~--------------~~~~~~~~~~~~~~v~~~~~S~  305 (1045)
T 1k32_A          245 TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-K---IEIG--------------DLESPEDRIISIPSKFAEDFSP  305 (1045)
T ss_dssp             CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-E---CCCC--------------CCCBCCSEEEECGGGGEEEEEE
T ss_pred             CCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-e---eccC--------------cccccccccccccccceeeecC
Confidence            357788999999999988 5899999998431110 0   0000              000111123466789999999 


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCc-cEeEEEEecCCCEEEEEECCCcEE-EEECCCCceeEEecccCCCe
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDRTAR-IWSMDRIQPLRIMAGHLSDV  508 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~dg~v~-lwd~~~~~~~~~~~~~~~~v  508 (670)
                      |+|+.|++++ ++.|++|++.++... .+..|.. .+.+++|+ +|..+++++.++.+. +|++.+++... +.+|...+
T Consensus       306 pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~  381 (1045)
T 1k32_A          306 LDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNV  381 (1045)
T ss_dssp             CGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSE
T ss_pred             CCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccce
Confidence            9999999888 789999999876544 4566776 89999999 999999999988888 99998776544 44788899


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC----------eEEEEeCCC
Q 005913          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----------TIMMWDLAS  578 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg----------~I~iwDl~~  578 (670)
                      .+++|+|+|++|++++.++.|++||+.+++......+|.+.+.+++|||||++|++++.++          .|++||+.+
T Consensus       382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            9999999999999999999999999999999888878999999999999999999887654          899999998


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccccc-------c-cC------------------
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE-------K-SG------------------  632 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-------~-~~------------------  632 (670)
                      ++ +..+..|...+.+++|+|+|++|++++.++...+|+............       . ..                  
T Consensus       462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (1045)
T 1k32_A          462 RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY  540 (1045)
T ss_dssp             TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred             Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccc
Confidence            87 667778888899999999999999999999888898654322100000       0 00                  


Q ss_pred             --CcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913          633 --TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       633 --~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~  663 (670)
                        ......+..++.+...+..++|+|+|.++++
T Consensus       541 d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~  573 (1045)
T 1k32_A          541 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYS  573 (1045)
T ss_dssp             CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEE
T ss_pred             cccCHhHceEEcCCCCCChhheEEcCCCeEEEE
Confidence              0001123345556678999999999988875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2.4e-21  Score=210.93  Aligned_cols=254  Identities=17%  Similarity=0.152  Sum_probs=181.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..++++++++++.++++|+.+| |+||+.........    ..   ... ....     .........|.+.|++++|+|
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----~~---~~~-~~~~-----~~~~~~~~~~~~~v~~l~~sp  102 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----PG---DDP-NKIV-----DKVQGLLVPMKFPIHHLALSC  102 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----TT---CCT-TCEE-----ECCCCEEECCSSCEEEEEECT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----cc---cCc-cccc-----ccCccccccCCCcccEEEEcC
Confidence            3578999999999999999888 99988643110000    00   000 0000     001112234678899999999


Q ss_pred             CCCEEE----EEeCCCeEEEEeCCCC--------ce---eEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 005913          432 LGDFIL----SSSADTTIRLWSTKLN--------AN---LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (670)
Q Consensus       432 ~~~~L~----s~s~Dg~I~lwd~~~~--------~~---~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~  495 (670)
                      ++++|+    +|+.|++|++||+.+.        +.   +..+.+|...|.+++|+|+ +.+|++++.||+|++||++++
T Consensus       103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred             CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence            999999    7888999999998654        22   3456679999999999997 899999999999999999998


Q ss_pred             ceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-------CCeEEEEEcCCCCEEEEE-EC
Q 005913          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPDGRYMASG-DE  567 (670)
Q Consensus       496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-------~~I~~l~~sp~g~~l~sg-~~  567 (670)
                      ..+....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+..|.       ..|.+++|++++.++++. ..
T Consensus       183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            7776777888999999999999999999999999999998 66666665442       379999999998887653 34


Q ss_pred             CC------eEEEEeCCCCe-----eeEEee-------CCCcceEEEEEcCCCCEEEEEEC-CCcEEEEeCCC
Q 005913          568 DG------TIMMWDLASGR-----CVTPLM-------GHTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVTT  620 (670)
Q Consensus       568 dg------~I~iwDl~~~~-----~~~~~~-------~h~~~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~~  620 (670)
                      +|      .+++||+++..     ....+.       +...+-..+.+-++.+++++++. .+.|.|+....
T Consensus       262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            43      38999998652     111111       11222233344466676666554 45577776543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=1.5e-20  Score=197.68  Aligned_cols=254  Identities=7%  Similarity=0.084  Sum_probs=180.7

Q ss_pred             ceeEEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee
Q 005913          341 SVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (670)
Q Consensus       341 s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (670)
                      .........+...+..++|+|||++++++..  ++.|.+|++....                          ......+.
T Consensus        29 ~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~--------------------------~~~~~~~~   82 (347)
T 3hfq_A           29 TLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT--------------------------AHKLNTVV   82 (347)
T ss_dssp             EEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE--------------------------EEEEEEEE
T ss_pred             eEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc--------------------------EEEeeeee
Confidence            3344445556677889999999994444432  6899999985311                          12333344


Q ss_pred             cCccCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce---eEEeeC---------CCccEeEEEEecCCCEEEEEECCC
Q 005913          419 GHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNAN---LVCYKG---------HNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~---~~~~~~---------h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                      .+...+..++|+|+|++|++++ .+++|.+|++.....   +..+..         +...+.+++|+|+|+.+++...++
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            5677888999999999988887 789999999963322   222221         122488899999999666666788


Q ss_pred             cEEEEECC-CCceeE--Eecc-cCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCC--CcE--EEEEecCC------CCe
Q 005913          486 TARIWSMD-RIQPLR--IMAG-HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGHR------SMI  550 (670)
Q Consensus       486 ~v~lwd~~-~~~~~~--~~~~-~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~--~~~--~~~~~~h~------~~I  550 (670)
                      .|.+|++. +++...  .+.. ....+..++|+|+|++++++ ..++.|++|++..  ++.  +..+....      ..+
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  242 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA  242 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence            99999998 443322  2222 23467889999999977664 5678999999874  543  22333222      348


Q ss_pred             EEEEEcCCCCEEE-EEECCCeEEEEeCCC---CeeeEEeeCCCcceEEEEEcCCCCEEEEEECC-CcEEEEeCCC
Q 005913          551 LSLAMSPDGRYMA-SGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTT  620 (670)
Q Consensus       551 ~~l~~sp~g~~l~-sg~~dg~I~iwDl~~---~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-g~I~iwd~~~  620 (670)
                      ..++|+|+|++|+ ++..++.|.+||+..   ...+..+..+...+.+++|+|+|++|++++.+ +.|.+|++..
T Consensus       243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            8999999999874 556789999999972   35566666667778999999999988888765 8999996643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.2e-21  Score=213.43  Aligned_cols=242  Identities=14%  Similarity=0.137  Sum_probs=177.4

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceeE-----EeeCCCccEeEEEEecCCCEEE----EEE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLV-----CYKGHNYPVWDVQFNPQGHYFA----SSS  482 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~----------~~~~-----~~~~h~~~V~~l~~sp~g~~l~----s~s  482 (670)
                      ..++.+++++++.++++++.++ +++|+....          ..+.     ....+...|.+++|+|+|.+|+    +|+
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            4578899999999999999888 899874310          0111     1123566799999999999999    788


Q ss_pred             CCCcEEEEECCCC--------ce---eEEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCe
Q 005913          483 HDRTARIWSMDRI--------QP---LRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI  550 (670)
Q Consensus       483 ~dg~v~lwd~~~~--------~~---~~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I  550 (670)
                      .|++|++||+.+.        ++   +..+.+|...|.+++|+|+ +++|++++.||+|++||++++..+....+|...|
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v  195 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV  195 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence            8999999998654        22   4556679999999999998 8999999999999999999998877777899999


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC-------CcceEEEEEcCCCCEEEEE-ECCCc------EEEE
Q 005913          551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-------TSCVWTLAYSCEGSLLASG-SADCT------VKLW  616 (670)
Q Consensus       551 ~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h-------~~~V~sl~~s~~g~~l~sg-s~Dg~------I~iw  616 (670)
                      .+++|+|+|++|++|+.||.|++||++ +.....+..|       ...|.+++|++++.++++. +.||.      +++|
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~  274 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA  274 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence            999999999999999999999999998 5555555433       3389999999988877553 34433      8999


Q ss_pred             eCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          617 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       617 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ++...........   .........+.....+-+.+.+-++..++++++...
T Consensus       275 ~l~~~~~~~~~~~---~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s  323 (434)
T 2oit_A          275 LLPKKEEKHPEIF---VNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS  323 (434)
T ss_dssp             ECCCTTTCCCCEE---EECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred             EeccCCCCCCcce---EecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence            9986532100000   000111122223444555555557777776666543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=8.7e-21  Score=197.36  Aligned_cols=255  Identities=11%  Similarity=0.129  Sum_probs=192.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-cCcc-CEEEEEEcCCCCEEE-EEe
Q 005913          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSG-PVYSASFSPLGDFIL-SSS  440 (670)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~V~~l~~sp~~~~L~-s~s  440 (670)
                      +++++++.++.|.+||+.+..                            ....+. ++.. .+.+++|+|+++.++ +++
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~   53 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA----------------------------VDKVITIADAGPTPMVPMVAPGGRIAYATVN   53 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE----------------------------EEEEEECTTCTTCCCCEEECTTSSEEEEEET
T ss_pred             cEEEEcCCCCeEEEEECCCCc----------------------------EEEEEEcCCCCCCccceEEcCCCCEEEEEeC
Confidence            478899999999999987521                            222222 2222 477899999998764 556


Q ss_pred             CCCeEEEEeCCCCceeEEeeCC-----CccEeEEEEecCCCEEEEEE------------CCCcEEEEECCCCceeEEecc
Q 005913          441 ADTTIRLWSTKLNANLVCYKGH-----NYPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h-----~~~V~~l~~sp~g~~l~s~s------------~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      .++.|.+||+.+++.+..+...     ...+.+++|+|+|.++++++            .++.|.+||+.+++.+..+..
T Consensus        54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  133 (337)
T 1pby_B           54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence            6889999999998887766532     22577899999999998886            579999999999888877764


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--------------
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--------------  569 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg--------------  569 (670)
                       ...+.+++|+|++++|+++  ++.|++||+.+++.+..+..+.. ...+.|+|+|..++.++..+              
T Consensus       134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~  209 (337)
T 1pby_B          134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDI  209 (337)
T ss_dssp             -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTS
T ss_pred             -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccc
Confidence             4568889999999988888  68999999999998877765441 11337899998776554332              


Q ss_pred             ----------eEEEEeCCCCeee-EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          570 ----------TIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       570 ----------~I~iwDl~~~~~~-~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                                .|.+||+.+++.. ..+..+...+.+++|+|+|++++++  ++.|.+||+.++...              
T Consensus       210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~--------------  273 (337)
T 1pby_B          210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI--------------  273 (337)
T ss_dssp             CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE--------------
T ss_pred             ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCc--------------
Confidence                      4789999998764 2334566778899999999999988  799999999876432              


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                       ..+.. ...+.+++|+|+|.+|++++.++
T Consensus       274 -~~~~~-~~~~~~~~~s~dg~~l~~~~~~~  301 (337)
T 1pby_B          274 -KRVPL-PHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             -EEEEC-SSCCCEEEECTTSCEEEEESBSS
T ss_pred             -ceecC-CCceeeEEECCCCCEEEEEcCCC
Confidence             12211 23578999999999888876654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=6.1e-21  Score=220.66  Aligned_cols=280  Identities=12%  Similarity=0.109  Sum_probs=193.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc--cccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQ--QAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      +..+.|+  |..+++++.+| | +||+.+...  ...........      .+. .   ....  ...+...|.+++|+|
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~------~l~-~---~~~~--~~~~~~~v~~~~~sp   91 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA------LMP-E---GCKF--QTTDAFPSFRTLDAG   91 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT------TC-----------------CCCEEEEETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh------hcc-c---hhcc--ccccccCceeEEECC
Confidence            5557777  66777777788 8 999876432  11100000000      000 0   0000  112235799999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-----CceeEEecccCC
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQPLRIMAGHLS  506 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-----~~~~~~~~~~~~  506 (670)
                      + ..++.+. +++|++||+.+++... +..+...+.+++|+|+|++|+++ .++.|++||+.+     ++.......+..
T Consensus        92 d-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~  167 (706)
T 2z3z_A           92 R-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE  167 (706)
T ss_dssp             T-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred             C-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC
Confidence            9 6666554 5999999998876544 44567778999999999999985 679999999998     776665554444


Q ss_pred             C--------------eeEEEEcCCCCEEEEEE---------------------------------cCCcEEEEECCCCcE
Q 005913          507 D--------------VDCVRWHINCNYIATGS---------------------------------SDKTVRLWDVSSGEC  539 (670)
Q Consensus       507 ~--------------v~~v~~~p~~~~l~tgs---------------------------------~dg~I~iwd~~~~~~  539 (670)
                      .              +.+++|+|+|++|++++                                 .+..|++||+.+++.
T Consensus       168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence            3              48999999999999987                                 446799999999887


Q ss_pred             EEEEe--cCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEeCCCCeeeEEee--CCCc---ceEEEEEcC--CCCEEE
Q 005913          540 VRIFI--GHRSMILSLAMSPDGRYMASGDEDG-----TIMMWDLASGRCVTPLM--GHTS---CVWTLAYSC--EGSLLA  605 (670)
Q Consensus       540 ~~~~~--~h~~~I~~l~~sp~g~~l~sg~~dg-----~I~iwDl~~~~~~~~~~--~h~~---~V~sl~~s~--~g~~l~  605 (670)
                      .....  .|...+.+++|+|||++|++++.++     .|++||+.+++....+.  .+..   .+.+++|+|  +|++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~  327 (706)
T 2z3z_A          248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW  327 (706)
T ss_dssp             EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred             EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence            65543  4667799999999999999987775     89999999984333332  2222   346789999  999999


Q ss_pred             EEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE-EEEecCCcEEEEeeCC
Q 005913          606 SGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS-LQFSRRNLLFAAGALS  667 (670)
Q Consensus       606 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~fs~~~~~La~gs~d  667 (670)
                      +++.||.++||.+.....              .+..+..+...+.+ ++|+|+|..|+.++.+
T Consensus       328 ~~~~~g~~~l~~~~~~~~--------------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          328 QSRRDGWNHLYLYDTTGR--------------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EECTTSSCEEEEEETTSC--------------EEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             EEccCCccEEEEEECCCC--------------EEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            999999999998863211              12344455667876 7999999877665544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=1.6e-20  Score=195.39  Aligned_cols=237  Identities=12%  Similarity=0.083  Sum_probs=184.7

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-c----CccCEEE
Q 005913          353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-G----HSGPVYS  426 (670)
Q Consensus       353 ~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----h~~~V~~  426 (670)
                      .+.+++|+||+++++ ++..++.|.+||+.+...                            ...+. +    |...+.+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~----------------------------~~~~~~~~~~~~~~~~~~   86 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET----------------------------LGRIDLSTPEERVKSLFG   86 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE----------------------------EEEEECCBTTEEEECTTC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe----------------------------EeeEEcCCcccccccccc
Confidence            588999999998765 555678999999875221                            11111 1    2235678


Q ss_pred             EEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC
Q 005913          427 ASFSPLGDFILSSS------------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR  494 (670)
Q Consensus       427 l~~sp~~~~L~s~s------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~  494 (670)
                      ++|+|++++|++++            .++.|.+||+.+++.+..+.. ...+.+++|+|+|++++++  ++.|.+||+.+
T Consensus        87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~  163 (337)
T 1pby_B           87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEA  163 (337)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred             eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence            99999999998886            579999999998887777665 4457889999999988888  68999999999


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEcCC------------------------cEEEEECCCCcEE-EEEecCCCC
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK------------------------TVRLWDVSSGECV-RIFIGHRSM  549 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg------------------------~I~iwd~~~~~~~-~~~~~h~~~  549 (670)
                      ++....+..+.. ...+.|+|++.++++++.++                        .|.+||+.+++.. ..+..+...
T Consensus       164 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  242 (337)
T 1pby_B          164 GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF  242 (337)
T ss_dssp             TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence            988877764431 11337899998776554332                        4789999998875 223456667


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      +.+++|+|+|++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|.+||+.++...
T Consensus       243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            8899999999999988  799999999999888777643 45789999999999999999999999999887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=2.2e-19  Score=189.95  Aligned_cols=244  Identities=12%  Similarity=0.153  Sum_probs=175.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSD----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~d----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +......++|+|||++|++++.+    +.|.+|++....                        +..........+.....
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~------------------------g~~~~~~~~~~~~~~p~  103 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK------------------------GTLHLLNTQKTMGADPC  103 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT------------------------TEEEEEEEEECSSSCEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC------------------------CcEEEeeEeccCCCCcE
Confidence            56678889999999999998876    799999986421                        01122233334556677


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEE------eeC--------CCccEeEEEEecCCCEEEEEE-CCCcEEE
Q 005913          426 SASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC------YKG--------HNYPVWDVQFNPQGHYFASSS-HDRTARI  489 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~~~~------~~~--------h~~~V~~l~~sp~g~~l~s~s-~dg~v~l  489 (670)
                      .+++  ++++|++++ .+++|.+|++.....+..      ..+        +...+.+++|+|+|+++++++ .++.+.+
T Consensus       104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v  181 (361)
T 3scy_A          104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK  181 (361)
T ss_dssp             EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence            7888  788777766 688999999975433211      111        123357899999999776665 4789999


Q ss_pred             EECCCCce------e-------EEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEE--EEEe---cCCCCe
Q 005913          490 WSMDRIQP------L-------RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECV--RIFI---GHRSMI  550 (670)
Q Consensus       490 wd~~~~~~------~-------~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~--~~~~---~h~~~I  550 (670)
                      |+++....      +       .....+...+.+++|+|+|+++++++ .++.|.+||+.++...  ..+.   .+....
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~  261 (361)
T 3scy_A          182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS  261 (361)
T ss_dssp             EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred             EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence            99875431      1       22234456688999999999888877 6899999999877542  2222   233457


Q ss_pred             EEEEEcCCCCEEEEEECC--CeEEEEeCC--CCe--eeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 005913          551 LSLAMSPDGRYMASGDED--GTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT  620 (670)
Q Consensus       551 ~~l~~sp~g~~l~sg~~d--g~I~iwDl~--~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~  620 (670)
                      .+++|+|+|++|+++..+  +.|.+|++.  ++.  .+..+.. ...+.+++|+|+|++|++++ .++.|.+|++..
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            899999999999776654  899999995  444  4444444 45678999999999888887 678999977653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=1.7e-19  Score=189.31  Aligned_cols=248  Identities=11%  Similarity=-0.013  Sum_probs=191.4

Q ss_pred             ceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (670)
Q Consensus       331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~-g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (670)
                      .+.+|+.......  ........+.+++|+|+|+++++ +..++.|.+||..+....                       
T Consensus        70 ~v~~~d~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-----------------------  124 (353)
T 3vgz_A           70 VVYRLDPVTLEVT--QAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-----------------------  124 (353)
T ss_dssp             EEEEECTTTCCEE--EEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------------------
T ss_pred             cEEEEcCCCCeEE--EEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-----------------------
Confidence            4556654433222  22233455788999999996654 455799999998753221                       


Q ss_pred             CccceeeeecCc---------cCEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEE
Q 005913          410 RKRSYTLYQGHS---------GPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF  478 (670)
Q Consensus       410 ~~~~~~~~~~h~---------~~V~~l~~sp~~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  478 (670)
                           ..+..+.         ..+.+++|+|+++++++++  .++.|.+||+.+++.+..+..+...+.+++|+|+|.++
T Consensus       125 -----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          125 -----GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             -----EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             -----EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence                 1111111         1368899999999887766  47899999999998888887666668899999999999


Q ss_pred             EEEECCCcEEEEECCCCceeEEecc----cCCCeeEEEEcCCCCEEEEEEcC-CcEEEEECCCCcEEEEEecCCCCeEEE
Q 005913          479 ASSSHDRTARIWSMDRIQPLRIMAG----HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIFIGHRSMILSL  553 (670)
Q Consensus       479 ~s~s~dg~v~lwd~~~~~~~~~~~~----~~~~v~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~h~~~I~~l  553 (670)
                      ++++.++.+.+||..+++....+..    +...+.+++|+|+++++++++.+ +.|.+||+.+++.+..+....  ..++
T Consensus       200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~  277 (353)
T 3vgz_A          200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAV  277 (353)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCE
T ss_pred             EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceE
Confidence            9999999999999999988877664    45567889999999988777654 899999999999888776543  2579


Q ss_pred             EEcCCCCEEEEEE-CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC
Q 005913          554 AMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC  611 (670)
Q Consensus       554 ~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg  611 (670)
                      +|+|+|+++++++ .++.|.+||..+++.+..+..+. .+.+++|+|+|++|+++..++
T Consensus       278 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          278 LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEECC
T ss_pred             EECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEccc
Confidence            9999999766655 68999999999999888876544 679999999999777776554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=3.2e-20  Score=194.29  Aligned_cols=234  Identities=13%  Similarity=0.087  Sum_probs=181.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCEEEEEEcCCCC
Q 005913          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGD  434 (670)
Q Consensus       356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~  434 (670)
                      .+++++++.++++++.++.|.+||+.+.                            .....+..+. ..+..++|+|+++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~   55 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD----------------------------TVYKSCVMPDKFGPGTAMMAPDNR   55 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT----------------------------EEEEEEECSSCCSSCEEEECTTSS
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC----------------------------cEEEEEecCCCCCCceeEECCCCC
Confidence            4568889999999999999999998752                            1222222222 2567899999998


Q ss_pred             EEE-EEeCCCeEEEEeCCCCceeEEeeCCC------ccEeEEEEecCCCEEEEEECC------------CcEEEEECCCC
Q 005913          435 FIL-SSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHD------------RTARIWSMDRI  495 (670)
Q Consensus       435 ~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s~d------------g~v~lwd~~~~  495 (670)
                      .++ +++.++.|.+||+.+++.+..+..+.      ..+.+++|+|+|+++++++.+            +.|.+||+.++
T Consensus        56 ~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  135 (349)
T 1jmx_B           56 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  135 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence            665 55578999999999988877666432      337889999999999999865            89999999874


Q ss_pred             c---eeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-------------------------
Q 005913          496 Q---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------------------------  547 (670)
Q Consensus       496 ~---~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-------------------------  547 (670)
                      +   .+..+.. ...+.+++|+|+|+ +++++  +.|++||+.+++.+..+..+.                         
T Consensus       136 ~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (349)
T 1jmx_B          136 LEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS  211 (349)
T ss_dssp             GGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             cccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence            3   3344443 34688999999999 66653  449999999988776654331                         


Q ss_pred             -------------------------------------------CCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          548 -------------------------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       548 -------------------------------------------~~I~~l~~sp-~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                                                                 ..+.+++|+| +|++++++  ++.|.+||+.+++.+.
T Consensus       212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~  289 (349)
T 1jmx_B          212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK  289 (349)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred             eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence                                                       1345678889 99999988  8899999999999887


Q ss_pred             EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       584 ~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      .+..+ ..+.+++|+|+|++|++++.++.|.+||+.+.+..
T Consensus       290 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          290 AANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             EEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence            77633 45789999999998888888999999999886543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=6.8e-20  Score=192.63  Aligned_cols=237  Identities=14%  Similarity=0.148  Sum_probs=169.5

Q ss_pred             ecCccCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCce--eEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEE
Q 005913          418 QGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS  491 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s~s~---Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd  491 (670)
                      ..+...+..++|+|+|+ |++++.   ++.|++|++.++..  +..+..+...+..++|+|+|+++++++ .++.+.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34556778899999999 555554   68999999976653  334445677788999999999998888 779999999


Q ss_pred             CCC-C--ceeEEecc---------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcEEE--EEecC-CCCeEEEEE
Q 005913          492 MDR-I--QPLRIMAG---------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVR--IFIGH-RSMILSLAM  555 (670)
Q Consensus       492 ~~~-~--~~~~~~~~---------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~~~--~~~~h-~~~I~~l~~  555 (670)
                      +.. +  ..+..+..         +...+.+++|+|+|+.++++..++.|++||+. +++...  .+..+ ...+..++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            963 2  22333321         12348899999999966666678899999998 554332  22222 336788999


Q ss_pred             cCCCCEEEE-EECCCeEEEEeCCC--Cee--eEEeeCCC------cceEEEEEcCCCCEE-EEEECCCcEEEEeCCCCcc
Q 005913          556 SPDGRYMAS-GDEDGTIMMWDLAS--GRC--VTPLMGHT------SCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       556 sp~g~~l~s-g~~dg~I~iwDl~~--~~~--~~~~~~h~------~~V~sl~~s~~g~~l-~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +|+|+++++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|+|++| +++..++.|.+|++.....
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            999997666 45788999999874  543  23333222      458899999999977 5566789999999874211


Q ss_pred             ccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                                  ...+..++.+...+.+++|+|+|++|++++.+
T Consensus       275 ------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          275 ------------LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             ------------EEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             ------------EEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence                        12334445555568899999999988887765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=4.5e-19  Score=187.58  Aligned_cols=234  Identities=12%  Similarity=0.153  Sum_probs=165.5

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCC--Cce--eEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEE
Q 005913          420 HSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKL--NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW  490 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~D----g~I~lwd~~~--~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lw  490 (670)
                      +...+..++|+|++++|++++.+    +.|.+|++..  +..  +.....+......+++  ++.++++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66777889999999999999886    7999998875  332  2333445556667777  888877776 57899999


Q ss_pred             ECCCCceeEE----e--cc--------cCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCc-------E------EEE
Q 005913          491 SMDRIQPLRI----M--AG--------HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE-------C------VRI  542 (670)
Q Consensus       491 d~~~~~~~~~----~--~~--------~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~-------~------~~~  542 (670)
                      ++.....+..    +  .+        +...+.+++|+|+|+++++++ .++.|++|++....       .      ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            9975432211    1  11        123457899999999777665 47899999887543       1      122


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCee--eEEee---CCCcceEEEEEcCCCCEEEEEECC--CcEE
Q 005913          543 FIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC--VTPLM---GHTSCVWTLAYSCEGSLLASGSAD--CTVK  614 (670)
Q Consensus       543 ~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~--~~~~~---~h~~~V~sl~~s~~g~~l~sgs~D--g~I~  614 (670)
                      ...+...+.+++|+|+|+++++++ .++.|.+||+.++..  +..+.   .+...+..++|+|+|++|+++..+  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            233455688999999999888877 689999999987754  33332   334557899999999988776654  8999


Q ss_pred             EEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          615 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       615 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      +|++......           ...+..+.. ...+.+++|+|+|++|++++.+
T Consensus       286 v~~~~~~~g~-----------~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          286 IFKVDETNGT-----------LTKVGYQLT-GIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             EEEECTTTCC-----------EEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred             EEEEcCCCCc-----------EEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence            9999632110           112333333 4567899999999988888744

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=5.2e-20  Score=196.29  Aligned_cols=290  Identities=11%  Similarity=-0.001  Sum_probs=192.6

Q ss_pred             eEEEeecCCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccce
Q 005913          343 SFYTFINTHNGLNC-----ASISQDGSLVAGGFS-DSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY  414 (670)
Q Consensus       343 ~~~t~~~~~~~V~~-----l~fs~d~~~La~g~~-dg~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (670)
                      ....+..+......     .+|||||++||.++. +|.  |.+|++.+.                            ...
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g----------------------------~~~   73 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ----------------------------VAT   73 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC----------------------------EEE
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC----------------------------ceE
Confidence            34445555555555     889999999998887 674  667776541                            122


Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEE--EecCCCEEEEEE----------
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSS----------  482 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~--~sp~g~~l~s~s----------  482 (670)
                      ....++...+.+++|+|+|+.|+.++.++.|++||+.+++....+..+...+....  ++|++.+++...          
T Consensus        74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence            22334555555678999999999999999999999999988777776666554444  488999887532          


Q ss_pred             ------------CCCcEEEEECCCCceeEEecccCCCeeEEEEcC-CCCEEEEEEcC------CcEEEEECCCCcEEEEE
Q 005913          483 ------------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIF  543 (670)
Q Consensus       483 ------------~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~d------g~I~iwd~~~~~~~~~~  543 (670)
                                  .+..|.+||+.+++.... ..+...+..++|+| +|+.|+.++.+      ..|.++|+..+.... +
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l  231 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-V  231 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-S
T ss_pred             ccchhhhhhccCCcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-e
Confidence                        346899999998865544 45667789999999 99999887753      378888887665443 4


Q ss_pred             ecCC--CCeEEEEEcCCCCEEEEEEC-CC----eEEEEeCCCCee--eEEeeCCCcc---eEEEEEcCCCCEEEEE----
Q 005913          544 IGHR--SMILSLAMSPDGRYMASGDE-DG----TIMMWDLASGRC--VTPLMGHTSC---VWTLAYSCEGSLLASG----  607 (670)
Q Consensus       544 ~~h~--~~I~~l~~sp~g~~l~sg~~-dg----~I~iwDl~~~~~--~~~~~~h~~~---V~sl~~s~~g~~l~sg----  607 (670)
                      ..+.  ..+..++|+|||+.|+..+. ++    .|++||+.+++.  +..+.++...   ...+.|+|||+.|+..    
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred             eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence            3443  25788999999997765443 22    399999998874  3333331111   1123799999987754    


Q ss_pred             -----ECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          608 -----SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       608 -----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                           ..+..|++||+.++........ ..  .+..  ........+.+++|+|+|+.|+.++..
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~--~~~~--~~~~~~~~~~~~~~spDg~~l~~~s~~  371 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKNGTQHRVARH-DT--SWKV--FEGDRQVTHPHPSFTPDDKQILFTSDV  371 (388)
T ss_dssp             -----CCCCEEEEEETTTTEEEEEEEC-CC--CCCC--BTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             cccccCCCCEEEEEeccCCceEEeccc-cC--cccc--cccccccCCCCccCCCCCCEEEEEecC
Confidence                 4567899999987543110000 00  0000  001112247788999999988877653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=2.2e-20  Score=216.50  Aligned_cols=264  Identities=12%  Similarity=0.114  Sum_probs=187.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc---CEEEEEEcCC
Q 005913          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASFSPL  432 (670)
Q Consensus       356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~  432 (670)
                      +++|+|||++++++ .||.|++|++.+..                            ....+.+|..   .|.+++||||
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~----------------------------~~~~~~~~~~~~~~~~~~~~SpD   70 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQ----------------------------SYTILSNRTMKSVNASNYGLSPD   70 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCC----------------------------EEEEECHHHHHTTTCSEEEECTT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCc----------------------------EEEEEccccccccceeeEEECCC
Confidence            67899999766655 79999999987521                            2223333333   4889999999


Q ss_pred             CCEEEEEeC---------CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-c
Q 005913          433 GDFILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-A  502 (670)
Q Consensus       433 ~~~L~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~  502 (670)
                      |++|++++.         +++|++||+.+++.+.... ....+.+++|||||+.|+++. ++.|++|++.+++..+.. .
T Consensus        71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~  148 (719)
T 1z68_A           71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN  148 (719)
T ss_dssp             SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred             CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence            999998876         7899999999887621011 124688999999999999986 789999999888765543 2


Q ss_pred             ccCCC-----------------eeEEEEcCCCCEEEEEEcCC----------------------------------cEEE
Q 005913          503 GHLSD-----------------VDCVRWHINCNYIATGSSDK----------------------------------TVRL  531 (670)
Q Consensus       503 ~~~~~-----------------v~~v~~~p~~~~l~tgs~dg----------------------------------~I~i  531 (670)
                      ++...                 ..+++|+|||++|++++.|.                                  .|++
T Consensus       149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            22221                 25899999999999988652                                  7889


Q ss_pred             EECCCCcEE---EE-----EecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEe----CCCCeeeEEe----eCCCcc
Q 005913          532 WDVSSGECV---RI-----FIGHRSMILSLAMSPDGRYMASGDED----GTIMMWD----LASGRCVTPL----MGHTSC  591 (670)
Q Consensus       532 wd~~~~~~~---~~-----~~~h~~~I~~l~~sp~g~~l~sg~~d----g~I~iwD----l~~~~~~~~~----~~h~~~  591 (670)
                      ||+.+++..   ..     +.+|...+.+++||||++++++....    ..|.+||    ..++++...+    .+|.+.
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~  308 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW  308 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence            999988753   21     23577789999999998877775433    3489999    8888766555    467777


Q ss_pred             eE-----EEEEcCCCCEEEE--EECCCc--EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEE
Q 005913          592 VW-----TLAYSCEGSLLAS--GSADCT--VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFA  662 (670)
Q Consensus       592 V~-----sl~~s~~g~~l~s--gs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La  662 (670)
                      +.     .+.|+|||+.|+.  +..+|.  |.+|++.++.                ...+..+...|..+.++ ++..++
T Consensus       309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----------------~~~lt~~~~~v~~~~~~-d~~~i~  371 (719)
T 1z68_A          309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----------------AIQITSGKWEAINIFRV-TQDSLF  371 (719)
T ss_dssp             SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----------------CEECSCSSSCEEEEEEE-CSSEEE
T ss_pred             EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----------------eEecccCceEEEEEEEE-eCCEEE
Confidence            76     8899999996544  445664  5666665432                11233344457777777 766666


Q ss_pred             EeeCC
Q 005913          663 AGALS  667 (670)
Q Consensus       663 ~gs~d  667 (670)
                      ..+.+
T Consensus       372 ~~~~~  376 (719)
T 1z68_A          372 YSSNE  376 (719)
T ss_dssp             EEESC
T ss_pred             EEEec
Confidence            55543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=6.3e-20  Score=212.71  Aligned_cols=292  Identities=12%  Similarity=0.116  Sum_probs=201.7

Q ss_pred             cceecCCCCCCceeEEEeecCCC----CEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCccccccCCCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHN----GLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGEN  396 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~----~V~~l~fs~d~~~La~g~~---------dg~I~Iwdl~~~~~~~~~~~~~~~~  396 (670)
                      ..+++|+........  +..++.    .|.+++|||||++||+++.         ++.|++||+.+.....         
T Consensus        36 ~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~---------  104 (719)
T 1z68_A           36 NNIVLYNIETGQSYT--ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR---------  104 (719)
T ss_dssp             SCEEEEESSSCCEEE--EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---------
T ss_pred             CCEEEEEcCCCcEEE--EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc---------
Confidence            467788765554332  232222    4899999999999998876         7899999987522100         


Q ss_pred             CCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-eCCCccE---------
Q 005913          397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPV---------  466 (670)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V---------  466 (670)
                                       ...+   ...+.+++|||||+.|++++ +++|++|++.++...... .++...|         
T Consensus       105 -----------------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A          105 -----------------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             -----------------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             -----------------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence                             0001   24578899999999999886 789999999887765432 2232222         


Q ss_pred             --------eEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCcee---EE-
Q 005913          467 --------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPL---RI-  500 (670)
Q Consensus       467 --------~~l~~sp~g~~l~s~s~dg----------------------------------~v~lwd~~~~~~~---~~-  500 (670)
                              .+++|+|||++|++++.|.                                  .|++||+.+++..   .. 
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence                    4899999999999988652                                  7889999887653   21 


Q ss_pred             ----ecccCCCeeEEEEcCCCCEEEEEEcCC----cEEEEE----CCCCcEEEEE----ecCCCCeE-----EEEEcCCC
Q 005913          501 ----MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWD----VSSGECVRIF----IGHRSMIL-----SLAMSPDG  559 (670)
Q Consensus       501 ----~~~~~~~v~~v~~~p~~~~l~tgs~dg----~I~iwd----~~~~~~~~~~----~~h~~~I~-----~l~~sp~g  559 (670)
                          +.+|...+.+++|+||++++++....+    .|++||    +.++++...+    .+|.+.+.     +++|+|||
T Consensus       244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence                235777899999999987777754332    489999    8887766555    46777676     88999999


Q ss_pred             CEEEE--EECCC--eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccc
Q 005913          560 RYMAS--GDEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEK  630 (670)
Q Consensus       560 ~~l~s--g~~dg--~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~  630 (670)
                      +.|+.  +..+|  .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+     +.+++|.+.......     
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~-----  396 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP-----  396 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC-----
T ss_pred             CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC-----
Confidence            96554  44555  57888887766 45566666678887777 77777766655     889999886521100     


Q ss_pred             cCCccccccc-ccCCCCCCeEEEEEecCCcEEEEe
Q 005913          631 SGTNRLRSLK-TLPTKSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       631 ~~~~~~~~~~-~~~~~~~~V~~l~fs~~~~~La~g  664 (670)
                          ....+. .+..+...+..+.|+|++..++..
T Consensus       397 ----~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~  427 (719)
T 1z68_A          397 ----SKKCVTCHLRKERCQYYTASFSDYAKYYALV  427 (719)
T ss_dssp             ----CEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred             ----CceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence                001111 123355678899999998877754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=3.3e-19  Score=201.55  Aligned_cols=227  Identities=11%  Similarity=0.031  Sum_probs=168.7

Q ss_pred             CccCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCCC-ccEeEEEEecCCCEEEEEEC---CCcEEEEECCC
Q 005913          420 HSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSH---DRTARIWSMDR  494 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~s~---dg~v~lwd~~~  494 (670)
                      +..+|++++|+|||+.|++++. ||+++||++.++.. ..+..|. ..+..+.|+|+ +.+++++.   +....+|.++.
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            3568999999999999998887 99999999965554 4444454 68999999999 77777765   45556655432


Q ss_pred             --CceeEEecccCCCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC---
Q 005913          495 --IQPLRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---  568 (670)
Q Consensus       495 --~~~~~~~~~~~~~v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d---  568 (670)
                        ......+... ..+...+|+|+++. +++++.++.+.+||+.+++.......+.   .+++|||||++|++++.+   
T Consensus        98 ~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A           98 SRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             TSTTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred             cCCCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence              2222233322 34556788888863 3344445556699999988776655443   789999999999988777   


Q ss_pred             -CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC--cEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913          569 -GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  645 (670)
Q Consensus       569 -g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  645 (670)
                       +.|++||+.+++.. .+..|.+.+.+++|||||+.|+++..+|  .|++||+.++...                .+..+
T Consensus       174 ~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~----------------~~~~~  236 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE----------------DLELP  236 (582)
T ss_dssp             EEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE----------------ECCCS
T ss_pred             CeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE----------------EccCC
Confidence             78999999888754 6778888999999999999999888898  8999999876532                22233


Q ss_pred             CCCeEEEE--------EecCCcEEEEeeCCCC
Q 005913          646 STPVYSLQ--------FSRRNLLFAAGALSKT  669 (670)
Q Consensus       646 ~~~V~~l~--------fs~~~~~La~gs~dgs  669 (670)
                      ...+..++        |+|+|.++++++.+|+
T Consensus       237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~  268 (582)
T 3o4h_A          237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGR  268 (582)
T ss_dssp             CSHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred             CcChhhhhhccccceeEcCCCcEEEEEEcCCc
Confidence            33444444        9999998898888774

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=1.6e-18  Score=184.11  Aligned_cols=242  Identities=11%  Similarity=0.031  Sum_probs=172.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMA-KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ..+..++|+|||++|++++.+ .|.+|++. +...                          ........+ +.+.+++|+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~--------------------------~~~~~~~~~-g~~~~~~~s   91 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI--------------------------VHEASHPIG-GHPRANDAD   91 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE--------------------------EEEEEEECC-SSGGGGCTT
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE--------------------------EEeeEeecC-CCCccEEEC
Confidence            467889999999999988877 99999985 2110                          000111111 224458899


Q ss_pred             CCCCE--EEEEe-------------CCCeEEEEeCCC-CceeEEee----CCCccEeEEEEecCCCEEEEEEC-CCcEEE
Q 005913          431 PLGDF--ILSSS-------------ADTTIRLWSTKL-NANLVCYK----GHNYPVWDVQFNPQGHYFASSSH-DRTARI  489 (670)
Q Consensus       431 p~~~~--L~s~s-------------~Dg~I~lwd~~~-~~~~~~~~----~h~~~V~~l~~sp~g~~l~s~s~-dg~v~l  489 (670)
                      |+|++  +++++             .+|++.+|++.. ++....+.    .+...+.+++|+|+|+++++++. ++.|++
T Consensus        92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~  171 (365)
T 1jof_A           92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT  171 (365)
T ss_dssp             SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence            99994  44553             689999999974 54433333    24567899999999998887764 679999


Q ss_pred             EECC-CCcee--EEec--ccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECC--CCcEEE---EEe-------cCCC---
Q 005913          490 WSMD-RIQPL--RIMA--GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS--SGECVR---IFI-------GHRS---  548 (670)
Q Consensus       490 wd~~-~~~~~--~~~~--~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~--~~~~~~---~~~-------~h~~---  548 (670)
                      |+++ +++..  ..+.  .|...+..++|+|+|+++++++. ++.|.+|++.  +++...   .+.       +|..   
T Consensus       172 ~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  251 (365)
T 1jof_A          172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG  251 (365)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred             EEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence            9998 66543  2233  23567899999999999988775 6899999765  565431   222       1222   


Q ss_pred             ---CeEEEE-EcCCCCEEEEEECC-C-----eEEEEeCC-CCeeeE---EeeCCCcceEEEEEcC---CCCEEEEEECC-
Q 005913          549 ---MILSLA-MSPDGRYMASGDED-G-----TIMMWDLA-SGRCVT---PLMGHTSCVWTLAYSC---EGSLLASGSAD-  610 (670)
Q Consensus       549 ---~I~~l~-~sp~g~~l~sg~~d-g-----~I~iwDl~-~~~~~~---~~~~h~~~V~sl~~s~---~g~~l~sgs~D-  610 (670)
                         .+..++ |+|||++|++++.+ +     .|.+|++. +++...   ....+...+..++|+|   +|++|++++.+ 
T Consensus       252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~  331 (365)
T 1jof_A          252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE  331 (365)
T ss_dssp             SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred             cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC
Confidence               488999 99999998876543 2     89999996 565433   2333555567899999   89999999865 


Q ss_pred             CcEEEEeCCCC
Q 005913          611 CTVKLWDVTTS  621 (670)
Q Consensus       611 g~I~iwd~~~~  621 (670)
                      ++|.+|++...
T Consensus       332 ~~v~v~~~~~~  342 (365)
T 1jof_A          332 GWLEIYRWKDE  342 (365)
T ss_dssp             CEEEEEEEETT
T ss_pred             CeEEEEEEchh
Confidence            89999998764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=2.6e-18  Score=200.00  Aligned_cols=237  Identities=13%  Similarity=0.145  Sum_probs=172.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc-----CEEEEE
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----PVYSAS  428 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~  428 (670)
                      ..++.|+|||.+++++  ||.|++|++.+...                            ...+.+|..     ...+++
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~   68 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNS----------------------------SVFLENSTFDEFGHSINDYS   68 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCE----------------------------EEEECTTTTTTCCSCCCEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCce----------------------------EEEEechhhhhhcccccceE
Confidence            5588999999999987  99999999876322                            222333332     234588


Q ss_pred             EcCCCCEEEEEeCC---------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          429 FSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       429 ~sp~~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      |||||++|+.++.+         +.+.+||+.+++.. .+..|...+...+|||||+.||.+. ++.|++|++.++...+
T Consensus        69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A           69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred             ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence            99999999998876         56779999988754 3566777899999999999999884 6899999998877554


Q ss_pred             Eec-ccCC-----------------CeeEEEEcCCCCEEEEEEcCC----------------------------------
Q 005913          500 IMA-GHLS-----------------DVDCVRWHINCNYIATGSSDK----------------------------------  527 (670)
Q Consensus       500 ~~~-~~~~-----------------~v~~v~~~p~~~~l~tgs~dg----------------------------------  527 (670)
                      ... ++..                 ....+.|+|||++|+.++.|.                                  
T Consensus       147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~  226 (740)
T 4a5s_A          147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP  226 (740)
T ss_dssp             CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred             EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence            322 2222                 223589999999999876332                                  


Q ss_pred             --cEEEEECCC---C---cEEEEEe-----cCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEeCCCCe----ee--EE
Q 005913          528 --TVRLWDVSS---G---ECVRIFI-----GHRSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGR----CV--TP  584 (670)
Q Consensus       528 --~I~iwd~~~---~---~~~~~~~-----~h~~~I~~l~~sp~g~~l~sg~~----dg~I~iwDl~~~~----~~--~~  584 (670)
                        .|++||+.+   +   +......     +|...+..++|+|||+.++....    +..|++||+.+++    +.  ..
T Consensus       227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~  306 (740)
T 4a5s_A          227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ  306 (740)
T ss_dssp             EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred             eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence              488899988   7   4433322     37778999999999997766543    3479999999887    32  22


Q ss_pred             e--eCCCcceE-----EEEEcCCCCEEE-EEEC-CC--cEEEEeCCCCc
Q 005913          585 L--MGHTSCVW-----TLAYSCEGSLLA-SGSA-DC--TVKLWDVTTST  622 (670)
Q Consensus       585 ~--~~h~~~V~-----sl~~s~~g~~l~-sgs~-Dg--~I~iwd~~~~~  622 (670)
                      +  ..|.+.|.     +..|+|||+.|+ ..+. +|  .|.+||+.++.
T Consensus       307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            2  45665554     789999999877 6653 44  57788877643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=1e-18  Score=186.40  Aligned_cols=275  Identities=9%  Similarity=-0.041  Sum_probs=180.5

Q ss_pred             EEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC-EEEEEE
Q 005913          354 LNCASISQDGSLVAGGFSD-S--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASF  429 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~d-g--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~  429 (670)
                      +.+++|||||++||.+... |  .|.+|++.+..                             ...+..+... ...+.|
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-----------------------------~~~l~~~~~~~~~~~~~   88 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-----------------------------AVQLTEGKGDNTFGGFI   88 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-----------------------------EEECCCSSCBCTTTCEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-----------------------------EEEeecCCCCccccceE
Confidence            6778999999998877543 3  57777866421                             1111222222 233689


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeE-------------------EEEecCCCEEEEE-----ECCC
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-------------------VQFNPQGHYFASS-----SHDR  485 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-------------------l~~sp~g~~l~s~-----s~dg  485 (670)
                      +|+|+.|+.++.++.|++|++.+++.......+......                   +.|+|++..++.+     ..+.
T Consensus        89 spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~  168 (396)
T 3c5m_A           89 STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC  168 (396)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred             CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence            999999999999999999999988776666644432222                   3456777665544     3566


Q ss_pred             cEEEEECCCCceeEEecccCCCeeEEEEcC-CCCEEEEEEcC------CcEEEEECCCCcEEEEEecC-CCCeEEEEEcC
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSP  557 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h-~~~I~~l~~sp  557 (670)
                      .|++||+.+++..... .+...+..+.|+| ++..|+..+.+      ..|.+||+.+++........ ...+..++|+|
T Consensus       169 ~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp  247 (396)
T 3c5m_A          169 RLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP  247 (396)
T ss_dssp             EEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred             eEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence            8999999988765554 4667889999999 78877776643      36889998766544333211 22578899999


Q ss_pred             CCCEEEEEECC-----CeEEEEeCCCCeeeEEeeCCCcceEEEEEcC-CCCEEEEEE----------------CCCcEEE
Q 005913          558 DGRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-EGSLLASGS----------------ADCTVKL  615 (670)
Q Consensus       558 ~g~~l~sg~~d-----g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~-~g~~l~sgs----------------~Dg~I~i  615 (670)
                      +|++|+.++.+     +.|++||+.+++...... ..+ .. +.|+| +|+++++++                .++.|.+
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~  324 (396)
T 3c5m_A          248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV  324 (396)
T ss_dssp             TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred             CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence            99988776544     459999998886543222 122 23 89999 999888765                3478999


Q ss_pred             EeCCCCccccccccccCCccccccccc-CCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          616 WDVTTSTKVLKTEEKSGTNRLRSLKTL-PTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       616 wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      ||+.++........ ..  .   +..+ ......+..++|+|+|..|+.++.+
T Consensus       325 ~d~~~~~~~~l~~~-~~--~---~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          325 LNTKAKSAQKLCKH-ST--S---WDVLDGDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             EETTTTBCCEEEEC-CC--C---CCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             EecccCceEEccCC-CC--c---cccccccccCCCCCceEccCCCeEEEEecC
Confidence            99877542110000 00  0   0000 0001125567899999988877654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=3.7e-18  Score=178.50  Aligned_cols=221  Identities=9%  Similarity=0.071  Sum_probs=168.5

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCC-ccEeEEEEecCCCEEE-EEECCCcEEEEECCCCceeEEecc
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFA-SSSHDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~-s~s~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      ++++++++.++++++.+++|++||+.+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888899999999999999999998887777543 2577899999998665 445789999999999888777653


Q ss_pred             c------CCCeeEEEEcCCCCEEEEEEcC------------CcEEEEECCCCc---EEEEEecCCCCeEEEEEcCCCCEE
Q 005913          504 H------LSDVDCVRWHINCNYIATGSSD------------KTVRLWDVSSGE---CVRIFIGHRSMILSLAMSPDGRYM  562 (670)
Q Consensus       504 ~------~~~v~~v~~~p~~~~l~tgs~d------------g~I~iwd~~~~~---~~~~~~~h~~~I~~l~~sp~g~~l  562 (670)
                      +      ...+.+++|+|+|+++++++.+            +.|.+||+.+++   .+..+.. ...+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-E
Confidence            3      2337899999999999998865            899999998844   3344443 34688999999999 6


Q ss_pred             EEEECCCeEEEEeCCCCeeeEEeeCCC-----------------------------------------------------
Q 005913          563 ASGDEDGTIMMWDLASGRCVTPLMGHT-----------------------------------------------------  589 (670)
Q Consensus       563 ~sg~~dg~I~iwDl~~~~~~~~~~~h~-----------------------------------------------------  589 (670)
                      ++++.  .|.+||+.+++.+..+..+.                                                     
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            65543  49999999988776654321                                                     


Q ss_pred             ---------------cceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913          590 ---------------SCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ  653 (670)
Q Consensus       590 ---------------~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  653 (670)
                                     ..+.+++|+| +|++++++  ++.|.+||+.++...               ..+.. ...+.+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~---------------~~~~~-~~~~~~~~  301 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI---------------KAANL-DHTYYCVA  301 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE---------------EEEEC-SSCCCEEE
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE---------------EEEcC-CCCccceE
Confidence                           1345677889 99999888  889999999876432               12211 23467899


Q ss_pred             EecCCcEEEEeeCCC
Q 005913          654 FSRRNLLFAAGALSK  668 (670)
Q Consensus       654 fs~~~~~La~gs~dg  668 (670)
                      |+|+|..|++++.++
T Consensus       302 ~s~dg~~l~~~~~~~  316 (349)
T 1jmx_B          302 FDKKGDKLYLGGTFN  316 (349)
T ss_dssp             ECSSSSCEEEESBSS
T ss_pred             ECCCCCEEEEecCCC
Confidence            999998887776554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.2e-17  Score=177.28  Aligned_cols=234  Identities=10%  Similarity=0.047  Sum_probs=165.0

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEee--CCCccEeEEEEecCCCE--EEEEE------------
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVCYK--GHNYPVWDVQFNPQGHY--FASSS------------  482 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~-~~~~~~~~~--~h~~~V~~l~~sp~g~~--l~s~s------------  482 (670)
                      +...+..++|+|++++|++++.+ .|.+|++. +++......  .+. .+.+++|+|+|++  +++++            
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            33467889999999999999888 99999997 665543322  122 3566899999994  44553            


Q ss_pred             -CCCcEEEEECC-CCceeEEec----ccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECC-CCcEE--EEEe--cCCCCe
Q 005913          483 -HDRTARIWSMD-RIQPLRIMA----GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS-SGECV--RIFI--GHRSMI  550 (670)
Q Consensus       483 -~dg~v~lwd~~-~~~~~~~~~----~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~-~~~~~--~~~~--~h~~~I  550 (670)
                       .++++.+|+++ .++....+.    .+...+.+++|+|+|+++++++. ++.|++||+. +++..  ..+.  .|...+
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence             68999999997 455444333    24567999999999999888764 6799999998 77653  2333  235678


Q ss_pred             EEEEEcCCCCEEEEEEC-CCeEEEEeCC--CCeee---EEee-------CCCc------ceEEEE-EcCCCCEEEEEECC
Q 005913          551 LSLAMSPDGRYMASGDE-DGTIMMWDLA--SGRCV---TPLM-------GHTS------CVWTLA-YSCEGSLLASGSAD  610 (670)
Q Consensus       551 ~~l~~sp~g~~l~sg~~-dg~I~iwDl~--~~~~~---~~~~-------~h~~------~V~sl~-~s~~g~~l~sgs~D  610 (670)
                      ..++|+|+|++|++++. ++.|.+|++.  +++..   ..+.       +|..      .+..++ |+|||++|++++.+
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            99999999999988775 7899999765  56542   1222       1222      588999 99999988877643


Q ss_pred             -C-----cEEEEeCCCCccccccccccCCccccccc-ccCCCCCCeEEEEEec---CCcEEEEeeCC
Q 005913          611 -C-----TVKLWDVTTSTKVLKTEEKSGTNRLRSLK-TLPTKSTPVYSLQFSR---RNLLFAAGALS  667 (670)
Q Consensus       611 -g-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~l~fs~---~~~~La~gs~d  667 (670)
                       +     +|.+|++......            ..+. ........+..++|+|   +|++|++++.+
T Consensus       276 ~~~~~~~~i~v~~~~~~g~~------------~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          276 NKFELQGYIAGFKLRDCGSI------------EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCE------------EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             CCCCCCCeEEEEEECCCCCE------------EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence             2     8999999632111            0011 1222334466789999   79999888765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=7.3e-18  Score=193.31  Aligned_cols=276  Identities=13%  Similarity=0.023  Sum_probs=190.4

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          347 FINTHNGLNCASISQDGSLVAGG--FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g--~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      +..|...|.+++|++++-+++.+  ..++...||.....+.                            ...+..|...+
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~~~l~~~~~~~   70 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA----------------------------EESALPAPWNV   70 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC----------------------------EEESSCTTCCB
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC----------------------------cceeCCCCccc
Confidence            34566789999999887777776  5588899998632111                            11222232222


Q ss_pred             E---------EEEEc--CCCCE-EEEEeC-CCeEEEEeCC--CCceeEEeeC-----CCccEeEEEEecCCCEEEEEECC
Q 005913          425 Y---------SASFS--PLGDF-ILSSSA-DTTIRLWSTK--LNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD  484 (670)
Q Consensus       425 ~---------~l~~s--p~~~~-L~s~s~-Dg~I~lwd~~--~~~~~~~~~~-----h~~~V~~l~~sp~g~~l~s~s~d  484 (670)
                      .         ...|+  |||+. |+.++. +..|++|++.  +......+..     |...+.+++|+|||+.|++++.+
T Consensus        71 ~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~  150 (662)
T 3azo_A           71 RNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEE  150 (662)
T ss_dssp             CCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEE
T ss_pred             cccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEec
Confidence            2         34455  99998 776654 5667777765  2034455555     67788999999999999999877


Q ss_pred             ----------CcEEEEECCC------CceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCC--------cEEEEECC-CC-
Q 005913          485 ----------RTARIWSMDR------IQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDK--------TVRLWDVS-SG-  537 (670)
Q Consensus       485 ----------g~v~lwd~~~------~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg--------~I~iwd~~-~~-  537 (670)
                                ..|++||+.+      +.. ..+. .+...+..++|+|||++|+.++.++        .|++||+. ++ 
T Consensus       151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~  229 (662)
T 3azo_A          151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR  229 (662)
T ss_dssp             ECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred             ccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence                      5899999988      544 4555 5567788899999999999887553        79999998 57 


Q ss_pred             --cEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--eEEEEeCCCCeeeEEeeCCCcc--------eEEEEEcCCCCEEE
Q 005913          538 --ECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLASGRCVTPLMGHTSC--------VWTLAYSCEGSLLA  605 (670)
Q Consensus       538 --~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg--~I~iwDl~~~~~~~~~~~h~~~--------V~sl~~s~~g~~l~  605 (670)
                        +......+|...+..++|+|||+++++++.+|  .|.+||+.+++.......+...        +.+++|+|++.+++
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          230 FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred             ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence              45555555678899999999999888888888  7777787677654433333222        56789999999999


Q ss_pred             EEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE-EEecCCcEEEEeeC
Q 005913          606 SGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL-QFSRRNLLFAAGAL  666 (670)
Q Consensus       606 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l-~fs~~~~~La~gs~  666 (670)
                      +++. +.++||.+.....              .+..+..+...+..+ +++.+..++++++.
T Consensus       310 ~~~~-~~~~l~~~d~~~~--------------~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~  356 (662)
T 3azo_A          310 VHGK-GAAVLGILDPESG--------------ELVDAAGPWTEWAATLTVSGTRAVGVAASP  356 (662)
T ss_dssp             EEBS-SSCEEEEEETTTT--------------EEEECCSSCCEEEEEEEEETTEEEEEEEET
T ss_pred             EEEc-CccEEEEEECCCC--------------cEEEecCCCCeEEEEEecCCCEEEEEEcCC
Confidence            9999 9999995543211              122333445556666 55555445555443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=5.5e-17  Score=169.71  Aligned_cols=239  Identities=14%  Similarity=0.134  Sum_probs=184.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCC------------------------cEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          352 NGLNCASISQDGSLVAGGFSDS------------------------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg------------------------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      +.+.+++++|+|++++++..++                        .|.+||..+                         
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------------------------   78 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-------------------------   78 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-------------------------
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-------------------------
Confidence            5699999999999999988774                        455555432                         


Q ss_pred             CCCccceeee-ecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEe---------eCCCccEeEEEEec-CC
Q 005913          408 NGRKRSYTLY-QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCY---------KGHNYPVWDVQFNP-QG  475 (670)
Q Consensus       408 ~~~~~~~~~~-~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~---------~~h~~~V~~l~~sp-~g  475 (670)
                         ....... .++-....+++++|+|+++++.+.++.|++|+..... .+..+         .++-....+++++| ++
T Consensus        79 ---g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g  155 (329)
T 3fvz_A           79 ---AEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG  155 (329)
T ss_dssp             ---CCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred             ---CeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence               1111222 1344678999999999988888889999999987542 45544         23444688999999 78


Q ss_pred             CEEEEEE-CCCcEEEEECCCCceeEEecc----------cCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEE
Q 005913          476 HYFASSS-HDRTARIWSMDRIQPLRIMAG----------HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF  543 (670)
Q Consensus       476 ~~l~s~s-~dg~v~lwd~~~~~~~~~~~~----------~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~  543 (670)
                      ..+++.+ .++.|++|+ ..+..+..+..          +......++++|+ ++++++...++.|++||..+++.+..+
T Consensus       156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            8888876 689999999 45666666642          3344889999998 777777778899999999989998887


Q ss_pred             e--cCCCCeEEEEEcCCCCEEEEE-------ECCCeEEEEeCCCCeeeEEee---CCCcceEEEEEcCCCCEEEEEECCC
Q 005913          544 I--GHRSMILSLAMSPDGRYMASG-------DEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADC  611 (670)
Q Consensus       544 ~--~h~~~I~~l~~sp~g~~l~sg-------~~dg~I~iwDl~~~~~~~~~~---~h~~~V~sl~~s~~g~~l~sgs~Dg  611 (670)
                      .  .+...+.+++|+| |..+++.       ..+..|++||..+++.+..+.   ++...+.+++++|+|.++++...++
T Consensus       235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred             eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence            4  3556789999999 4444433       344589999999999988873   5667899999999999999999999


Q ss_pred             cEEEEeCCC
Q 005913          612 TVKLWDVTT  620 (670)
Q Consensus       612 ~I~iwd~~~  620 (670)
                      .|++|++..
T Consensus       314 ~I~~~~~~~  322 (329)
T 3fvz_A          314 TVWKFTLTE  322 (329)
T ss_dssp             CEEEEEEEE
T ss_pred             EEEEEeCCc
Confidence            999999764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=2.4e-16  Score=160.79  Aligned_cols=242  Identities=10%  Similarity=0.187  Sum_probs=181.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE-c
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S  430 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s  430 (670)
                      ..+.+++++++++++++...++.|.+|+.... ......                      ......+|...+.++++ .
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~----------------------~~~~~~~~~~~p~~i~~~~   86 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFG----------------------ECGKRDSQLLYPNRVAVVR   86 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEEC----------------------CBSSSTTCBSSEEEEEEET
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEec----------------------ccCCCcccccCceEEEEEc
Confidence            45899999999999998888999999997631 100000                      00000134567899999 4


Q ss_pred             CCCCEEEEEeC-CCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--ccCC
Q 005913          431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLS  506 (670)
Q Consensus       431 p~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~--~~~~  506 (670)
                      +++.++++... ++.|++|+ .++..+..+.. +...+.+++++|+|..+++...++.|.+||.+ ++.+..+.  .+..
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~  164 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE  164 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred             CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccC
Confidence            66766666543 88999999 45666655543 34568999999999988887788999999965 45555553  4556


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEECCC-eEEEEeCCCCeeeE
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVT  583 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~dg-~I~iwDl~~~~~~~  583 (670)
                      .+.+++++|+++++++.+.++.|++||. .++.+..+..+  ...+..++++|+|+++++...++ .|.+||. +++.+.
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~  242 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  242 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence            7899999999998888788999999997 56666666543  35789999999999888888776 9999995 566676


Q ss_pred             EeeCCC--cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          584 PLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       584 ~~~~h~--~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .+..+.  ..+.+++++|+|+++++ +.|++|++|++...
T Consensus       243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            666543  34789999999987777 67999999998654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=1.4e-16  Score=166.92  Aligned_cols=249  Identities=10%  Similarity=0.093  Sum_probs=174.2

Q ss_pred             CEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          353 GLNCASISQDGSLVAGGF---------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~---------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      .+..+.+  ||+++|...         .++.|.+|++.+.                             ....+    ..
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-----------------------------~~~~l----~~   60 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN-----------------------------ARRFI----EN   60 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC-----------------------------CEEEE----ES
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC-----------------------------ceEEc----cc
Confidence            4667777  888887642         2567888887641                             11122    56


Q ss_pred             EEEEEEcCCCCEEEEEeCC---C--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC--------------
Q 005913          424 VYSASFSPLGDFILSSSAD---T--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--------------  484 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~D---g--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--------------  484 (670)
                      +.+++|||||+.|+.++.+   +  .|++|++.+++.......+ . +..+.|+|+|+.|+.++.+              
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            7889999999999887654   3  4888898877665554443 3 9999999999999888743              


Q ss_pred             -------------CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCC-------cEEEEECCCCcEEEEEe
Q 005913          485 -------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI  544 (670)
Q Consensus       485 -------------g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg-------~I~iwd~~~~~~~~~~~  544 (670)
                                   ..|++||+.+++.+..+.. . .+..++|+|+| ++++++.++       ...+|.+.+++.. .+.
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~  214 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMF  214 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEE
T ss_pred             eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-Eec
Confidence                         5799999998877455554 3 88899999999 777776542       3344433355544 344


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECC--------CeEEEEeCCCCeeeEEeeCCCcceEE-EEEcCCCCEEEEEECCCcEEE
Q 005913          545 GHRSMILSLAMSPDGRYMASGDED--------GTIMMWDLASGRCVTPLMGHTSCVWT-LAYSCEGSLLASGSADCTVKL  615 (670)
Q Consensus       545 ~h~~~I~~l~~sp~g~~l~sg~~d--------g~I~iwDl~~~~~~~~~~~h~~~V~s-l~~s~~g~~l~sgs~Dg~I~i  615 (670)
                      .+ ..+.++  +|+|++|+.++.+        ..|.+||  +++.......|...+.. +.|+ ++ ++++++.++.++|
T Consensus       215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l  287 (347)
T 2gop_A          215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL  287 (347)
T ss_dssp             EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred             cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence            44 555554  9999998887754        4788888  56554444566778886 9999 88 9999999999999


Q ss_pred             EeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          616 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       616 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      | +..+..                ..+..+...|.+++|+|  .++++++.++
T Consensus       288 ~-~~~g~~----------------~~~~~~~~~v~~~~~s~--~~~~~~~~~~  321 (347)
T 2gop_A          288 Y-IWDGEI----------------KPIAKGRHWIMGFDVDE--IVVYLKETAT  321 (347)
T ss_dssp             E-EESSSE----------------EEEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred             E-EcCCce----------------EEEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence            9 873211                11112356789999999  5666655544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.76  E-value=1.2e-16  Score=166.61  Aligned_cols=269  Identities=12%  Similarity=0.066  Sum_probs=193.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..|.++.|++++..++....++.++.|.-                               .....+..+...+.+++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA-------------------------------EPWLEISKKGLQLEGLNFDR   54 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-------------------------------EEEEEEESSCCCEEEEEECT
T ss_pred             cccceeeecCCccceeEEeecccCccccc-------------------------------ceeEEEeccCccccCcEECC
Confidence            35778888888887777777888888831                               23344556667789999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEec--ccC
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMA--GHL  505 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----g~v~lwd~~~~~~~~~~~--~~~  505 (670)
                      ++++++++..++.|.+||..+++.......+...+.+++|+|+|.+++++..+    +.|.+||.+++.....+.  .+.
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence            99988888889999999998877655544566789999999999888777666    689999998876554443  244


Q ss_pred             CCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCC
Q 005913          506 SDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLAS  578 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~  578 (670)
                      ..+.+++++|+|+++++...      .+.|..||..+++..... .+...+..++|+|+|+.|+.+ +.++.|.+||+.+
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            57899999999988776653      356777776665554333 334557899999999866554 5678999999964


Q ss_pred             -CeeeEE--------eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccC----CC
Q 005913          579 -GRCVTP--------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP----TK  645 (670)
Q Consensus       579 -~~~~~~--------~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  645 (670)
                       +..+..        +.++ ..+..++++++|+++++...++.|.+||... .....            + ..+    .+
T Consensus       214 ~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~~------------~-~~~~~~~g~  278 (333)
T 2dg1_A          214 DGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIGQ------------I-LIPGRDEGH  278 (333)
T ss_dssp             TSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEEE------------E-ECTTGGGTC
T ss_pred             CCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEEE------------E-EcCCCcccc
Confidence             332221        1122 4678899999999888888889999999743 22110            1 111    11


Q ss_pred             CCCeEEEEEecCCcEEEEeeCC
Q 005913          646 STPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       646 ~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      ...+.+++|+|++..|.+++.+
T Consensus       279 ~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          279 MLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             SCBCCEEEECTTSCEEEEEEEC
T ss_pred             ccCcceEEECCCCCEEEEEeCc
Confidence            2258899999998666655544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=2.7e-17  Score=191.30  Aligned_cols=197  Identities=12%  Similarity=0.194  Sum_probs=152.7

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc-----EeEEEEecCCCEEEEEECC---------CcE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-----VWDVQFNPQGHYFASSSHD---------RTA  487 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-----V~~l~~sp~g~~l~s~s~d---------g~v  487 (670)
                      ....++.|+|++.+++++  |++|++||+.++++...+.+|...     ..++.|||||++++.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            345678999999988886  899999999999988888877643     2447899999999999876         566


Q ss_pred             EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCe----------------
Q 005913          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMI----------------  550 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I----------------  550 (670)
                      .+||+.+++... +..|...+..++|+|||+.|+.+ .++.|++||+.+++..+... ++...+                
T Consensus        95 ~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            799999987543 56677889999999999999988 57899999999887655322 222222                


Q ss_pred             -EEEEEcCCCCEEEEEECCC------------------------------------eEEEEeCCC---Ce--eeEEee--
Q 005913          551 -LSLAMSPDGRYMASGDEDG------------------------------------TIMMWDLAS---GR--CVTPLM--  586 (670)
Q Consensus       551 -~~l~~sp~g~~l~sg~~dg------------------------------------~I~iwDl~~---~~--~~~~~~--  586 (670)
                       ..+.|||||+.||.++.|.                                    .|++||+.+   +.  ....+.  
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence             3589999999999875321                                    588999988   73  223333  


Q ss_pred             ----CCCcceEEEEEcCCCCEEEEEEC----CCcEEEEeCCCCc
Q 005913          587 ----GHTSCVWTLAYSCEGSLLASGSA----DCTVKLWDVTTST  622 (670)
Q Consensus       587 ----~h~~~V~sl~~s~~g~~l~sgs~----Dg~I~iwd~~~~~  622 (670)
                          +|...+..++|+|||+.++....    +..|.+||+.++.
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                37788999999999997666543    3379999998865

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=7.8e-16  Score=160.90  Aligned_cols=234  Identities=15%  Similarity=0.188  Sum_probs=180.0

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCceeEEee-CCCccEeEEEEecCC
Q 005913          421 SGPVYSASFSPLGDFILSSSAD------------------------TTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQG  475 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~D------------------------g~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g  475 (670)
                      -+.+.+++++|+|+++++.+.+                        ++|.+||..+++.+..+. ++-.....++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999888877                        479999998888766554 344578899999999


Q ss_pred             CEEEEEECCCcEEEEECCCCc-eeEEe---------cccCCCeeEEEEcC-CCCEEEEEE-cCCcEEEEECCCCcEEEEE
Q 005913          476 HYFASSSHDRTARIWSMDRIQ-PLRIM---------AGHLSDVDCVRWHI-NCNYIATGS-SDKTVRLWDVSSGECVRIF  543 (670)
Q Consensus       476 ~~l~s~s~dg~v~lwd~~~~~-~~~~~---------~~~~~~v~~v~~~p-~~~~l~tgs-~dg~I~iwd~~~~~~~~~~  543 (670)
                      ..+++.+.++.|++|+.+... .+..+         .++......++++| +++.+++.+ .++.|++|| .++..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986542 45555         34555789999999 788888886 699999999 677777776


Q ss_pred             ecCC----------CCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCeeeEEee--CCCcceEEEEEcCCCCEEEEE---
Q 005913          544 IGHR----------SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASG---  607 (670)
Q Consensus       544 ~~h~----------~~I~~l~~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~--~h~~~V~sl~~s~~g~~l~sg---  607 (670)
                      ....          .....++++|+ |.++++...++.|++||..+++.+..+.  .+...+.+++|+| +..+++.   
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            4322          33889999998 7777777889999999999899888874  4557789999999 4333333   


Q ss_pred             ----ECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          608 ----SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       608 ----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                          ..+++|++|+..++......            .....+...+.+++|+|+|.++++...++
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~------------~~~~~~~~~p~~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVF------------KPVRKHFDMPHDIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEE------------CCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEE------------cCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence                34558999998876543211            11134556689999999998888776655

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=8.5e-16  Score=162.90  Aligned_cols=250  Identities=11%  Similarity=0.053  Sum_probs=168.6

Q ss_pred             CCCEEEEEe------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913          362 DGSLVAGGF------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (670)
Q Consensus       362 d~~~La~g~------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (670)
                      +++++.+..      .|+.|.+||..+.                            +....+..+..+  .++|+|++++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~----------------------------~~~~~i~~g~~p--~i~~spdg~~   63 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNG----------------------------KFLGMVPTAFNG--HVQVSNDGKK   63 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTC----------------------------CEEEEEECCEEE--EEEECTTSSE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCC----------------------------eEEEEecCCCCC--ceEECCCCCE
Confidence            455555543      3679999997642                            122334444455  8999999999


Q ss_pred             EEEEe----------CCCeEEEEeCCCCceeEEeeCC------CccEeEEEEecCCCEEEEEEC--CCcEEEEECCCCce
Q 005913          436 ILSSS----------ADTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQP  497 (670)
Q Consensus       436 L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h------~~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~~~~  497 (670)
                      +++++          .+++|.+||+.+.+.+..+...      ......++++|+|++++++..  +++|.+||+.+++.
T Consensus        64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~  143 (361)
T 2oiz_A           64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY  143 (361)
T ss_dssp             EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred             EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence            99886          3678999999988887776532      234678999999999998874  58999999999887


Q ss_pred             eEE-ecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCC-CcEE----------------------------------
Q 005913          498 LRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSS-GECV----------------------------------  540 (670)
Q Consensus       498 ~~~-~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~-~~~~----------------------------------  540 (670)
                      +.. +... . ...+.+.|++ ..+++.+.||.+.+|+... ++..                                  
T Consensus       144 ~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  221 (361)
T 2oiz_A          144 VEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYG  221 (361)
T ss_dssp             EEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTS
T ss_pred             EEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCC
Confidence            776 4321 1 1112333433 3334444444444444322 2211                                  


Q ss_pred             ---------------EEEec------CC----CCeEEEEEcCCCCEEEEEEC-----------CCeEEEEeCCCCeeeEE
Q 005913          541 ---------------RIFIG------HR----SMILSLAMSPDGRYMASGDE-----------DGTIMMWDLASGRCVTP  584 (670)
Q Consensus       541 ---------------~~~~~------h~----~~I~~l~~sp~g~~l~sg~~-----------dg~I~iwDl~~~~~~~~  584 (670)
                                     ..+..      +.    .....++|+|+++.++++..           .+.|.+||+.+++.+.+
T Consensus       222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~  301 (361)
T 2oiz_A          222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR  301 (361)
T ss_dssp             EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred             eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence                           11100      00    01112789999888777643           35899999999999999


Q ss_pred             eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc
Q 005913          585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL  659 (670)
Q Consensus       585 ~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~  659 (670)
                      +..+.  +.+++|+|+|++|++++. ++|.+||..++..             ..+.++.........++|+|+|.
T Consensus       302 i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l-------------~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          302 IPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP-------------KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC-------------EEEEEETTSCSSEEEEEECCCSC
T ss_pred             EecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc-------------eeeEEeccCCCCcEEEEecCCCC
Confidence            98877  899999999999998887 9999999988611             12344444455678899999885

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=1.7e-15  Score=155.41  Aligned_cols=237  Identities=12%  Similarity=0.051  Sum_probs=177.1

Q ss_pred             eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +........+++|+|+++ +++++..++.|..|+..+.                              ...+..+...+.
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~------------------------------~~~~~~~~~~~~   72 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ------------------------------LSPEMHPSHHQN   72 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC------------------------------EEEEESSCSSEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC------------------------------eEEEECCCCCcc
Confidence            344556688999999998 7888889999999997641                              233445667899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC----CccEeEEEEecCCCEEEEEEC-----------------C
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSH-----------------D  484 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s~-----------------d  484 (670)
                      +++++|+|+++++...++.|.+||..+++........    ...+.+++++|+|.++++.+.                 .
T Consensus        73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~  152 (296)
T 3e5z_A           73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG  152 (296)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred             eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence            9999999998887777789999999777654433221    224678999999998887321                 2


Q ss_pred             CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-CCcE---EEEEecCCCCeEEEEEcCCCC
Q 005913          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGEC---VRIFIGHRSMILSLAMSPDGR  560 (670)
Q Consensus       485 g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-~~~~---~~~~~~h~~~I~~l~~sp~g~  560 (670)
                      +.|..++.. + .+..+..+......++|+|+++.+++.+.++.|++||+. ++..   ...+..+.+.+.+++++++|+
T Consensus       153 ~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          153 RWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             CEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             cEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            455555554 3 344455666778999999999999777778999999997 5554   334433455678899999998


Q ss_pred             EEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEE-cCCCCEEEEEECCCcEEEEeCCC
Q 005913          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~-s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ++++.  ++.|.+||.. ++.+..+..+.. +++++| +|+++.|++++.++ +..++..+
T Consensus       231 l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          231 IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence            76666  8899999986 778888887777 899999 58999899888764 33444433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=2.7e-16  Score=180.23  Aligned_cols=201  Identities=11%  Similarity=0.072  Sum_probs=149.8

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCC----------CeEEEEeCCCC-----ceeEEee-CCCccEeEEEEecCCCEEEEEEC
Q 005913          420 HSGPVYSASFSPLGDFILSSSAD----------TTIRLWSTKLN-----ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH  483 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~D----------g~I~lwd~~~~-----~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~  483 (670)
                      |...+.+++|+|||+.|++++.+          .+|++||+.+.     .....+. .+...+..++|+|||++|+.++.
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            66788999999999999988877          58999999872     3344555 55667889999999999998875


Q ss_pred             CC--------cEEEEECC-CC---ceeEEecccCCCeeEEEEcCCCCEEEEEEcCC--cEEEEECCCCcEEEEEecCCCC
Q 005913          484 DR--------TARIWSMD-RI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFIGHRSM  549 (670)
Q Consensus       484 dg--------~v~lwd~~-~~---~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~  549 (670)
                      ++        .|++||++ ++   +......+|...+..++|+|+|+++++++.++  .|++||+.+++.......+...
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  287 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF  287 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence            53        79999998 56   44455555678899999999999888887788  6777777777765544333222


Q ss_pred             --------eEEEEEcCCCCEEEEEECCCeEEEE--eCCCCeeeEEeeCCCcceEEE-EEcCCCCEEEEEECCCc--EEEE
Q 005913          550 --------ILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTL-AYSCEGSLLASGSADCT--VKLW  616 (670)
Q Consensus       550 --------I~~l~~sp~g~~l~sg~~dg~I~iw--Dl~~~~~~~~~~~h~~~V~sl-~~s~~g~~l~sgs~Dg~--I~iw  616 (670)
                              +.+++|+|+++++++++. +.+++|  |+.++. +..+..|...+..+ +++.+.-++++++.+..  |.+|
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence                    567899999999999998 999999  655555 67777788778777 55544444555566654  4455


Q ss_pred             eCCCCc
Q 005913          617 DVTTST  622 (670)
Q Consensus       617 d~~~~~  622 (670)
                      |+.++.
T Consensus       366 d~~~g~  371 (662)
T 3azo_A          366 DTVTGR  371 (662)
T ss_dssp             ETTTCC
T ss_pred             ECCCCc
Confidence            655554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=9.8e-16  Score=160.50  Aligned_cols=223  Identities=12%  Similarity=0.089  Sum_probs=159.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC---Cc--EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          352 NGLNCASISQDGSLVAGGFSD---SS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~d---g~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      ..+.+++|||||++||.++.+   +.  |.+|++.+.                            .. ..+..+.. +.+
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g----------------------------~~-~~l~~~~~-~~~  108 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL----------------------------SS-KKILEAKN-IRS  108 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT----------------------------EE-EEEEEESE-EEE
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC----------------------------ce-EEEEcCCC-ccc
Confidence            468899999999999987654   34  666666531                            11 22222334 999


Q ss_pred             EEEcCCCCEEEEEeCC---------------------------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE
Q 005913          427 ASFSPLGDFILSSSAD---------------------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA  479 (670)
Q Consensus       427 l~~sp~~~~L~s~s~D---------------------------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~  479 (670)
                      ++|+|+|+.|+.++.+                           ..|++||+.+++.+..+.. . .+..+.|+|+| +++
T Consensus       109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~  185 (347)
T 2gop_A          109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV  185 (347)
T ss_dssp             EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred             eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence            9999999998887642                           5799999998876344444 3 78899999999 777


Q ss_pred             EEECCC-------cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC--------CcEEEEECCCCcEEEEEe
Q 005913          480 SSSHDR-------TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFI  544 (670)
Q Consensus       480 s~s~dg-------~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~  544 (670)
                      +++.++       ...+|.+++++ ...+..+ ..+.++  +|+|++|+.++.+        ..|++||  +++......
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~  259 (347)
T 2gop_A          186 NVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD  259 (347)
T ss_dssp             EEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred             EEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence            776542       34555544444 3444444 445444  9999999887754        3688888  666655555


Q ss_pred             cCCCCeEE-EEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcE-EEEeCC
Q 005913          545 GHRSMILS-LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV-KLWDVT  619 (670)
Q Consensus       545 ~h~~~I~~-l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I-~iwd~~  619 (670)
                      .+...+.. +.|+ +| ++++++.++.+++| +.+++. ..+..+.+.|.+++|+|  .++++++.++.. .||.+.
T Consensus       260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            56677886 9999 88 89999999999999 876654 44445678899999999  688888877765 777775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.72  E-value=4.8e-14  Score=143.75  Aligned_cols=271  Identities=10%  Similarity=0.044  Sum_probs=195.1

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+......+.+++++++|++.++...++.|.+|+... ..                           .......+...+.
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~---------------------------~~~~~~~~~~~~~   60 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLDG-KI---------------------------TEYPLPTPDAKVM   60 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE---------------------------EEEECSSTTCCEE
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCC-Ce---------------------------EEecCCcccCcee
Confidence            3444456799999999999888776688999998651 10                           0001112346789


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ec
Q 005913          426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MA  502 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~-~~  502 (670)
                      ++++++++.+.++...++.|..|+.. +. ...+.  .....+.++++.++|..+++...++.|..||. +++.... ..
T Consensus        61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~  137 (299)
T 2z2n_A           61 CLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP  137 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             eEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence            99999999988887778899999986 33 22232  24557889999999988887777889999998 4443332 23


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      .+...+.++++.++++.+++...++.|..||. +++.... ...+...+.+++++++|.++++...++.|.+||. ++..
T Consensus       138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence            34567899999999988877777789999998 6765543 2234456889999999997777767889999999 6654


Q ss_pred             eEE-eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913          582 VTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL  660 (670)
Q Consensus       582 ~~~-~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~  660 (670)
                      ... ...+...+.+++++++|+++++...++.|.+||.. +. ..             ....+.....+.++++ ++|.+
T Consensus       216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~-------------~~~~~~~~~~~~~i~~-~~g~l  279 (299)
T 2z2n_A          216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IE-------------EYPIQIKSAEPHGICF-DGETI  279 (299)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EE-------------EEECSSSSCCEEEEEE-CSSCE
T ss_pred             EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eE-------------EEeCCCCCCccceEEe-cCCCE
Confidence            322 23345678999999999977777678899999973 21 10             0112233456899999 88887


Q ss_pred             EEEee
Q 005913          661 FAAGA  665 (670)
Q Consensus       661 La~gs  665 (670)
                      .++..
T Consensus       280 ~v~~~  284 (299)
T 2z2n_A          280 WFAME  284 (299)
T ss_dssp             EEEET
T ss_pred             EEEec
Confidence            77654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=2.9e-16  Score=167.16  Aligned_cols=209  Identities=13%  Similarity=0.053  Sum_probs=159.4

Q ss_pred             ceeeeecCccCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913          413 SYTLYQGHSGPVYS-----ASFSPLGDFILSSSA-DT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (670)
Q Consensus       413 ~~~~~~~h~~~V~~-----l~~sp~~~~L~s~s~-Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d  484 (670)
                      ....+..|...+..     .+|+|||++|+.++. +|  .|.+||+.+++......++...+..+.|+|+|+.|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            44556666666665     789999999998887 66  48889999888777777777666678899999999999999


Q ss_pred             CcEEEEECCCCceeEEecccCCCeeEEE--EcCCCCEEEEEE----------------------cCCcEEEEECCCCcEE
Q 005913          485 RTARIWSMDRIQPLRIMAGHLSDVDCVR--WHINCNYIATGS----------------------SDKTVRLWDVSSGECV  540 (670)
Q Consensus       485 g~v~lwd~~~~~~~~~~~~~~~~v~~v~--~~p~~~~l~tgs----------------------~dg~I~iwd~~~~~~~  540 (670)
                      +.|++||+.+++.......+...+....  ++|++.+++...                      .+..|++||+.+++..
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST  181 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence            9999999999988777766655554444  489999887532                      3467999999998765


Q ss_pred             EEEecCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEeCCCCeeeEEeeCCC--cceEEEEEcCCCCEEEEEEC-C
Q 005913          541 RIFIGHRSMILSLAMSP-DGRYMASGDED------GTIMMWDLASGRCVTPLMGHT--SCVWTLAYSCEGSLLASGSA-D  610 (670)
Q Consensus       541 ~~~~~h~~~I~~l~~sp-~g~~l~sg~~d------g~I~iwDl~~~~~~~~~~~h~--~~V~sl~~s~~g~~l~sgs~-D  610 (670)
                      .. ..+...+..++|+| +|+.|+.+..+      ..|.++|...+.. ..+..+.  ..+..+.|+|||+.|+..+. +
T Consensus       182 ~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (388)
T 3pe7_A          182 VI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLK  259 (388)
T ss_dssp             EE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             Ee-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence            54 45667799999999 99999887753      3788888766543 3444444  35788999999997765443 2


Q ss_pred             C----cEEEEeCCCCcc
Q 005913          611 C----TVKLWDVTTSTK  623 (670)
Q Consensus       611 g----~I~iwd~~~~~~  623 (670)
                      +    .|++||+.++..
T Consensus       260 ~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          260 GSPDRFIYSADPETLEN  276 (388)
T ss_dssp             TCCCEEEEEECTTTCCE
T ss_pred             CCCcceEEEEecCCCce
Confidence            2    399999988753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=1.2e-15  Score=176.48  Aligned_cols=240  Identities=10%  Similarity=0.045  Sum_probs=178.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          353 GLNCASISQDGSLVAGGFSDS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      .+..++|||||++||.+..++     .|++||+.+..                            ...... ....+.++
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~----------------------------~~~~~~-~~~~~~~~  176 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK----------------------------ELPDVL-ERVKFSCM  176 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE----------------------------EEEEEE-EEECSCCE
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC----------------------------CCcccc-cCcccceE
Confidence            488999999999999776543     89999987521                            111111 11236679


Q ss_pred             EEcCCCCEEEEEeCCCe----------------EEEEeCCCCce--eEEeeC--CCccEeEEEEecCCCEEEEEEC----
Q 005913          428 SFSPLGDFILSSSADTT----------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSH----  483 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~----------------I~lwd~~~~~~--~~~~~~--h~~~V~~l~~sp~g~~l~s~s~----  483 (670)
                      +|+|||+.|+.++.++.                |++|++.++..  ...+..  |...+..+.|+|+|++++.++.    
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  256 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD  256 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence            99999999999888766                99999988763  233443  4555789999999999988765    


Q ss_pred             -CCcEEEEECCC------Cc-eeEEecccCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCc--EEEEEecCCC-
Q 005913          484 -DRTARIWSMDR------IQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGE--CVRIFIGHRS-  548 (670)
Q Consensus       484 -dg~v~lwd~~~------~~-~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~--~~~~~~~h~~-  548 (670)
                       +..|++||+.+      +. ....+..+...+.. .|+|+|..|+..+..    +.|.+||+.++.  ....+..|.. 
T Consensus       257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  335 (710)
T 2xdw_A          257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK  335 (710)
T ss_dssp             SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred             CccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence             56899999976      43 45666666666655 588999988876653    369999998774  2344445544 


Q ss_pred             -CeEEEEEcCCCCEEEEEECCCe--EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE-E---CCCcEEEEeCCCC
Q 005913          549 -MILSLAMSPDGRYMASGDEDGT--IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-S---ADCTVKLWDVTTS  621 (670)
Q Consensus       549 -~I~~l~~sp~g~~l~sg~~dg~--I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg-s---~Dg~I~iwd~~~~  621 (670)
                       .+..++|++++.++++...++.  |.+||+.+|+.+..+..+.+.|.+++++|++..++.. +   ..++|.+||+.++
T Consensus       336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence             6888999988888888888884  6677887888778888888889999999998766533 3   3478999999876


Q ss_pred             c
Q 005913          622 T  622 (670)
Q Consensus       622 ~  622 (670)
                      .
T Consensus       416 ~  416 (710)
T 2xdw_A          416 E  416 (710)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=7.4e-15  Score=149.64  Aligned_cols=231  Identities=11%  Similarity=0.174  Sum_probs=172.2

Q ss_pred             cCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee------CCCccEeEEEEe-cCCCEEEEEEC-CCcEEEE
Q 005913          419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK------GHNYPVWDVQFN-PQGHYFASSSH-DRTARIW  490 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~------~h~~~V~~l~~s-p~g~~l~s~s~-dg~v~lw  490 (670)
                      ++-..+.+++++++++++++.+.++.|.+||.. +..+..+.      ++...+.++++. +++..+++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988888889999999987 55555553      234568899995 67766665543 8899999


Q ss_pred             ECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 005913          491 SMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       491 d~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      | .+++.+..+. .+...+.+++++|+|+.+++...++.|++||. .++.+..+.  .+...+.+++++|+|+++++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 4566666654 34567899999999998888778899999996 466666664  34456899999999998888888


Q ss_pred             CCeEEEEeCCCCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCC-cEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          568 DGTIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADC-TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                      ++.|++||. .++.+..+..+  ...+.+++++++|+++++...++ .|.+|+... ....            .+.. ..
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~------------~~~~-~~  248 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLIS------------ALES-KV  248 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEE------------EEEE-SS
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEE------------EEcc-cC
Confidence            999999997 55666666443  36789999999999998888886 999999543 2111            0111 11


Q ss_pred             CCCCeEEEEEecCCcEEEEeeCCC
Q 005913          645 KSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       645 ~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ....+.+++|+|+|.++++ +.++
T Consensus       249 ~~~~~~~i~~~~~g~l~vs-~~~~  271 (286)
T 1q7f_A          249 KHAQCFDVALMDDGSVVLA-SKDY  271 (286)
T ss_dssp             CCSCEEEEEEETTTEEEEE-ETTT
T ss_pred             CCCcceeEEECCCCcEEEE-CCCC
Confidence            2234789999999998877 4444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.70  E-value=3.4e-15  Score=150.42  Aligned_cols=240  Identities=9%  Similarity=0.020  Sum_probs=175.1

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       353 ~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ...+++++++|++++ +.+.++.|.+|+..+...                            ......+...+.++++++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~----------------------------~~~~~~~~~~p~~i~~~~   76 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT----------------------------TVLPFNGLYQPQGLAVDG   76 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC---------------------------------EECCCCSCCSCCCEEECT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc----------------------------ceEeeCCcCCcceeEECC
Confidence            678999999999777 546788999998653110                            000112234567899999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeE
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~  510 (670)
                      +++++++.. ++.|.+||...... ..+. .....+.+++++++|..+++...++.|.+|+..+.............+.+
T Consensus        77 ~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~  154 (270)
T 1rwi_B           77 AGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG  154 (270)
T ss_dssp             TCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCC
T ss_pred             CCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCcee
Confidence            999666655 88999999876543 3332 23356889999999998777777889999987655443333334456889


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCc
Q 005913          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS  590 (670)
Q Consensus       511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~  590 (670)
                      ++++++|+.+++...++.|.+||...+........+...+.+++++++|.++++...++.|.+||............+..
T Consensus       155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  234 (270)
T 1rwi_B          155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  234 (270)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred             EEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence            99999999777777788999999887765543333446789999999998777777788999999876544332223335


Q ss_pred             ceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       591 ~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      .+.+++++++|+++++...++.|+++++....
T Consensus       235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            78999999999999999999999999987643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=6.4e-15  Score=151.10  Aligned_cols=233  Identities=16%  Similarity=0.062  Sum_probs=173.7

Q ss_pred             ceeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      ....+..+.....+++|+|+++ +++++..++.|..|+..++  ...+..+...+.+++++++|..+++...++.|.+||
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            3445556677788999999998 7778888999999999876  666777778899999999999877777778999999


Q ss_pred             CCCCceeEEeccc----CCCeeEEEEcCCCCEEEEE----Ec-------------CCcEEEEECCCCcEEEEEecCCCCe
Q 005913          492 MDRIQPLRIMAGH----LSDVDCVRWHINCNYIATG----SS-------------DKTVRLWDVSSGECVRIFIGHRSMI  550 (670)
Q Consensus       492 ~~~~~~~~~~~~~----~~~v~~v~~~p~~~~l~tg----s~-------------dg~I~iwd~~~~~~~~~~~~h~~~I  550 (670)
                      ..+++........    ...+..++++|+|+++++.    +.             .+.|..++.. ++ +..+..+....
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~  174 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKP  174 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSE
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCC
Confidence            9877655443321    2356789999999988873    31             3456666655 44 34455666778


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEeCC-CCee---eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccc
Q 005913          551 LSLAMSPDGRYMASGDEDGTIMMWDLA-SGRC---VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (670)
Q Consensus       551 ~~l~~sp~g~~l~sg~~dg~I~iwDl~-~~~~---~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~  626 (670)
                      ..++|+|+|+.+++.+.++.|.+||+. ++..   ...+..+.+.+.+++++++|+++++.  ++.|.+|+... .    
T Consensus       175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-~----  247 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-D----  247 (296)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-C----
T ss_pred             ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-C----
Confidence            999999999999777788999999987 5544   23333345667889999999977766  88999999753 2    


Q ss_pred             cccccCCcccccccccCCCCCCeEEEEE-ecCCcEEEEeeCCC
Q 005913          627 TEEKSGTNRLRSLKTLPTKSTPVYSLQF-SRRNLLFAAGALSK  668 (670)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~~V~~l~f-s~~~~~La~gs~dg  668 (670)
                                 .+..+..+.. +.+++| +|++..|.+++.++
T Consensus       248 -----------~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          248 -----------ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             -----------EEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             -----------EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence                       1233334444 889999 58988888877654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=6.4e-14  Score=145.92  Aligned_cols=238  Identities=10%  Similarity=0.060  Sum_probs=171.7

Q ss_pred             eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ....+..+...+.+++|+++|++++++..++.|.+|+..+..                            .......+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----------------------------~~~~~~~~~~   87 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----------------------------IKRPFVSHKA   87 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC----------------------------EEEEEECSSS
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc----------------------------EEEEeeCCCC
Confidence            344556666778999999999988888889999999976411                            1111224567


Q ss_pred             CEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEEC------CCcEEEE
Q 005913          423 PVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSH------DRTARIW  490 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~D----g~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~------dg~v~lw  490 (670)
                      .+.+++|+|++++++++..+    +.|.+||..++.....+.  .+...+.++.++|+|..+++...      .+.|..|
T Consensus        88 ~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~  167 (333)
T 2dg1_A           88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV  167 (333)
T ss_dssp             SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred             CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence            89999999999988877766    689999998776543333  24457899999999987776653      2556666


Q ss_pred             ECCCCceeEEecccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCC-CcEEEE-----E---ecCCCCeEEEEEcCCCC
Q 005913          491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS-GECVRI-----F---IGHRSMILSLAMSPDGR  560 (670)
Q Consensus       491 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~-~~~~~~-----~---~~h~~~I~~l~~sp~g~  560 (670)
                      +.++++... +..+...+..++|+|++++++++ +.++.|.+||+.+ +..+..     +   .++ ..+..++++++|+
T Consensus       168 ~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~  245 (333)
T 2dg1_A          168 SPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN  245 (333)
T ss_dssp             CTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC
T ss_pred             eCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC
Confidence            665544433 33344568899999999866554 4578999999964 333221     1   122 3678899999999


Q ss_pred             EEEEEECCCeEEEEeCCCCeeeEEeeCCCc------ceEEEEEcCCCCEEEEEECCC
Q 005913          561 YMASGDEDGTIMMWDLASGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSADC  611 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~------~V~sl~~s~~g~~l~sgs~Dg  611 (670)
                      ++++...++.|.+||. .++.+..+..+..      .+.+++|+|++..|+.++.++
T Consensus       246 l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          246 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            8888888899999998 5666666654443      689999999987776665553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=1.3e-14  Score=167.94  Aligned_cols=229  Identities=11%  Similarity=0.033  Sum_probs=166.2

Q ss_pred             cCccCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc-------
Q 005913          419 GHSGPVYSASFSPLGDFILSSSADT-----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT-------  486 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~Dg-----~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~-------  486 (670)
                      +|...+.+++|||||++|+.++.++     +|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3555788999999999998766543     8999999998876533222 23678999999999999988766       


Q ss_pred             ---------EEEEECCCCcee--EEecc--cCCCeeEEEEcCCCCEEEEEEc-----CCcEEEEECCC------Cc-EEE
Q 005913          487 ---------ARIWSMDRIQPL--RIMAG--HLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVSS------GE-CVR  541 (670)
Q Consensus       487 ---------v~lwd~~~~~~~--~~~~~--~~~~v~~v~~~p~~~~l~tgs~-----dg~I~iwd~~~------~~-~~~  541 (670)
                               |++|++.+++..  ..+..  |...+..+.|+|+|++|+.++.     +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999887632  33333  4455789999999999998775     56899999986      53 455


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEeCCCCe--eeEEeeCCCc--ceEEEEEcCCCCEEEEEECCCc-
Q 005913          542 IFIGHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGR--CVTPLMGHTS--CVWTLAYSCEGSLLASGSADCT-  612 (670)
Q Consensus       542 ~~~~h~~~I~~l~~sp~g~~l~sg~~d----g~I~iwDl~~~~--~~~~~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~-  612 (670)
                      .+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++.  ....+..|..  .+.+++|++++.+++++..|+. 
T Consensus       281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            66666666655 588999988776653    469999998774  2345555543  6888999988888999998985 


Q ss_pred             -EEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913          613 -VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       613 -I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g  664 (670)
                       |.+|++.++..               +..+..+...|..++++|++..++..
T Consensus       360 ~l~~~~~~~g~~---------------~~~l~~~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          360 TLQLHDLATGAL---------------LKIFPLEVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             EEEEEETTTCCE---------------EEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred             EEEEEECCCCCE---------------EEecCCCCceEEEEecCCCCCEEEEE
Confidence             45566644432               12223335568889999988655544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=1e-15  Score=162.96  Aligned_cols=249  Identities=10%  Similarity=0.020  Sum_probs=160.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (670)
Q Consensus       356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (670)
                      ++.|||||++|+.++.++.|.+|++.+............   .......+..........      .....+.|+|+++.
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~------~~~~~~~~spdg~~  155 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---WKGYGTWVANSDCTKLVG------IEILKRDWQPLTSW  155 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---EEEEEEEEECTTSSEEEE------EEEEGGGCCCCCSH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc---cCCCCCEEEeccCCcccc------ccccccccCCCCcc
Confidence            478999999999999999999999875332111110000   000000000000000000      00001457888887


Q ss_pred             EEEE-----eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec-CCCEEEEEECC------CcEEEEECCCCceeEEecc
Q 005913          436 ILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHD------RTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       436 L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d------g~v~lwd~~~~~~~~~~~~  503 (670)
                      ++.+     ..+..|++||+.+++..... .+...+..+.|+| ++..++.++.+      ..|.+|++..+.... +..
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~  233 (396)
T 3c5m_A          156 EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKE  233 (396)
T ss_dssp             HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSC
T ss_pred             eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eec
Confidence            7654     45678999999987765544 4566789999999 78877776643      368888987655433 333


Q ss_pred             c--CCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEE---------
Q 005913          504 H--LSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD---------  566 (670)
Q Consensus       504 ~--~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~---------  566 (670)
                      +  ...+..++|+|+|++|+.++.+     +.|++||+.+++........ + .. +.|+| +|+++++++         
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~  310 (396)
T 3c5m_A          234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVAD  310 (396)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC------
T ss_pred             cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeecc
Confidence            3  2357889999999988777654     44999999988765543222 2 33 89999 999888765         


Q ss_pred             -------CCCeEEEEeCCCCeeeEEeeCCCc-----------ceEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 005913          567 -------EDGTIMMWDLASGRCVTPLMGHTS-----------CVWTLAYSCEGSLLASGSA-DCTVKLWDVT  619 (670)
Q Consensus       567 -------~dg~I~iwDl~~~~~~~~~~~h~~-----------~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~  619 (670)
                             .++.|++||+.+++.. .+..+..           .+..++|+|+|+.|+.++. ++...||.+.
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          311 ADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             ----CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                   3478999999887643 4444443           2567899999998887764 5665666543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.64  E-value=3e-14  Score=151.00  Aligned_cols=220  Identities=15%  Similarity=0.142  Sum_probs=151.3

Q ss_pred             EEEEcCCCCEEEEEeC----------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          356 CASISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       356 ~l~fs~d~~~La~g~~----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .++|||||++++++..          ++.|.+||..+...........                      ....+.....
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~----------------------~~~~~g~~p~  111 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP----------------------KRVQGLNYDG  111 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT----------------------TBCCBCCCGG
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc----------------------cccccCCCcc
Confidence            8999999999998862          5679999986532211100000                      0000223456


Q ss_pred             EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCC-Ccee--
Q 005913          426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDR-IQPL--  498 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~-~~~~--  498 (670)
                      .++|+|+|++|++++.  +++|.+||+.+++.+.. +....  .+.+.+.|++ ..+++.+.||.+.+|+++. ++..  
T Consensus       112 ~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~  189 (361)
T 2oiz_A          112 LFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ  189 (361)
T ss_dssp             GEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred             eEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence            7899999999998874  58999999999877766 44221  2223444433 3445555555555555432 1111  


Q ss_pred             -----------------------------------------------EEecc------c----CCCeeEEEEcCCCCEEE
Q 005913          499 -----------------------------------------------RIMAG------H----LSDVDCVRWHINCNYIA  521 (670)
Q Consensus       499 -----------------------------------------------~~~~~------~----~~~v~~v~~~p~~~~l~  521 (670)
                                                                     ..+..      +    ......++|+|+++.++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly  269 (361)
T 2oiz_A          190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY  269 (361)
T ss_dssp             EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred             ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence                                                           00000      0    00111278899988888


Q ss_pred             EEEc-----------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC--eeeEEeeCC
Q 005913          522 TGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCVTPLMGH  588 (670)
Q Consensus       522 tgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~--~~~~~~~~h  588 (670)
                      ++..           .+.|.+||+.+++.+..+..+.  +.+++|+|+|++|++++. +.|.+||..++  +.+..+..+
T Consensus       270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~  346 (361)
T 2oiz_A          270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA  346 (361)
T ss_dssp             EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS
T ss_pred             EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC
Confidence            7654           3489999999999999998776  899999999999998887 99999999999  999888777


Q ss_pred             CcceEEEEEcCCCC
Q 005913          589 TSCVWTLAYSCEGS  602 (670)
Q Consensus       589 ~~~V~sl~~s~~g~  602 (670)
                      ......++++|+|+
T Consensus       347 G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          347 AEASLQVQFHPVGG  360 (361)
T ss_dssp             CSSEEEEEECCCSC
T ss_pred             CCCcEEEEecCCCC
Confidence            77788999999985

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=3.8e-15  Score=171.92  Aligned_cols=239  Identities=14%  Similarity=0.038  Sum_probs=168.5

Q ss_pred             CEEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          353 GLNCASISQDGSLVAG-----GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~-----g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      .+.+++|||||++||.     |+.+..|++||+.+.....                          ...+...  ...++
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--------------------------~~~~~~~--~~~~~  173 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--------------------------VDVIEGG--KYATP  173 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--------------------------SCCBSCC--TTCCC
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--------------------------CcccCcc--cccce
Confidence            5899999999999994     3445689999998632110                          0000111  11568


Q ss_pred             EEcCCCCEEEEEeCCCe-------------EEEEeCCCCce--eEEee--CCCccEeEEEEecCCCEEEEEECCC----c
Q 005913          428 SFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYK--GHNYPVWDVQFNPQGHYFASSSHDR----T  486 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~-------------I~lwd~~~~~~--~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg----~  486 (670)
                      +|+|||+.|+.++.|..             |++|++.++..  ...+.  .|...+.++.|+|+|++++.++.++    .
T Consensus       174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  253 (695)
T 2bkl_A          174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND  253 (695)
T ss_dssp             EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred             EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence            99999999999988776             99999998763  23333  3556788999999999998887666    6


Q ss_pred             EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCcE---EEEEecC-CCCeEEEEEcCC
Q 005913          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGEC---VRIFIGH-RSMILSLAMSPD  558 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~~---~~~~~~h-~~~I~~l~~sp~  558 (670)
                      |++|+..++. ...+..+...+....| ++|. ++..+.    ++.|.+||+.++..   ...+..+ ...+..++|+ +
T Consensus       254 l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~  329 (695)
T 2bkl_A          254 VYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G  329 (695)
T ss_dssp             EEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T
T ss_pred             EEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C
Confidence            7777665554 4444555566666667 5666 544443    57899999987753   3333333 4568888988 7


Q ss_pred             CCEEEEEECCCeEEEEeCC-CCeeeEEeeCC-CcceEEEEEcCCCCEEEEEE----CCCcEEEEeCCCCcc
Q 005913          559 GRYMASGDEDGTIMMWDLA-SGRCVTPLMGH-TSCVWTLAYSCEGSLLASGS----ADCTVKLWDVTTSTK  623 (670)
Q Consensus       559 g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs----~Dg~I~iwd~~~~~~  623 (670)
                      +.++++...|+..++|.+. ++..+..+..+ .+.|..++++|++..++...    ..++|++||+.++..
T Consensus       330 ~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          330 GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7888889999988888654 46666666655 67788899999987666333    347899999987653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=1.3e-13  Score=140.26  Aligned_cols=213  Identities=14%  Similarity=0.097  Sum_probs=170.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc-cCEEEEEEcCCCCEEEEEe
Q 005913          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDFILSSS  440 (670)
Q Consensus       362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~L~s~s  440 (670)
                      .+++|++++.++.|.+||..+                            .+....+..+. ..+.++.++|+|++++  +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t----------------------------G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s   53 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT----------------------------KEIVWEYPLEKGWECNSVAATKAGEILF--S   53 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT----------------------------TEEEEEEECCTTCCCCEEEECTTSCEEE--E
T ss_pred             CCcEEEeeCCCCEEEEEECCC----------------------------CeEEEEeCCCccCCCcCeEECCCCCEEE--e
Confidence            468899999999999999754                            22334444444 4688899999999888  4


Q ss_pred             CCCeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEEC-CCcEEEEECCCCceeEEec------ccCCCeeEEE
Q 005913          441 ADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMA------GHLSDVDCVR  512 (670)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~~~~~~~~~~------~~~~~v~~v~  512 (670)
                      .++.|..||. +++.+..+..+ ...+.++.+.++|.++++.+. ++.+..+|. +++.+..+.      .+......++
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence            5778999999 78888888865 357889999999999999887 778888886 566666554      1223455677


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC---
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT---  589 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~---  589 (670)
                      +.++|+++++.+.++.|..||.. |+.+..+... ..+.++.+.++|+.+++++.++.|..+|..+|+.+.++..+.   
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~  209 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG  209 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC
Confidence            88999999999999999999988 9999988765 456678889999999999989999999999999988886432   


Q ss_pred             ---cceEEEEEcCCCCEEEEEE
Q 005913          590 ---SCVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       590 ---~~V~sl~~s~~g~~l~sgs  608 (670)
                         ..+.++...++|+++++..
T Consensus       210 ~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          210 VQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CCCSEEEEEEECTTSCEEEEEE
T ss_pred             ccccccccceEcCCCCEEEEec
Confidence               2378888999999888874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=2.6e-12  Score=130.84  Aligned_cols=270  Identities=10%  Similarity=0.025  Sum_probs=192.5

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      .....+.+++++++|++.++...++.|.+|+... ...                           ...+..+...+.+++
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~---------------------------~~~~~~~~~~~~~i~   68 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSG-RIK---------------------------EFEVPTPDAKVMCLI   68 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE---------------------------EEECSSTTCCEEEEE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCC-ceE---------------------------EEECCCCCCcceeEE
Confidence            3456789999999999888877789999998651 100                           001112346788999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeE-EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecccCC
Q 005913          429 FSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLS  506 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~-~~~~~~  506 (670)
                      +.+++.+.++...++.|..||.. +.... ........+.++++.++|..+++...++.|..|+.+ ++.... +.....
T Consensus        69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~  146 (300)
T 2qc5_A           69 VSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS  146 (300)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred             ECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence            99999988877778899999988 54432 222234668899999999888877778899999987 544432 233456


Q ss_pred             CeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE-
Q 005913          507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP-  584 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~-  584 (670)
                      .+.++++.++++.+++...++.|..||. +++...... .+...+.+++++++|.+.++....+.|.+||. ++..... 
T Consensus       147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~  224 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD  224 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred             CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE
Confidence            7899999999996666666789999998 665544221 33456899999999987777767788999998 5544332 


Q ss_pred             eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEe
Q 005913          585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       585 ~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~g  664 (670)
                      +..+...+.+++++++|+++++...++.|..|+.. +...              ....+.....+.+++++++|.+.++.
T Consensus       225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ--------------EYQLQTENAEPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE--------------EEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred             CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE--------------EEECCccCCccceeEeCCCCCEEEEc
Confidence            33345678999999999977777677899999973 2210              01122234457889999999877665


Q ss_pred             e
Q 005913          665 A  665 (670)
Q Consensus       665 s  665 (670)
                      .
T Consensus       290 ~  290 (300)
T 2qc5_A          290 K  290 (300)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.62  E-value=8.6e-14  Score=140.10  Aligned_cols=230  Identities=9%  Similarity=0.040  Sum_probs=164.4

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      ...++++++++++++ +.+.++.|.+|+..+.........+...+.+++++++|..+++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999999776 547789999999765543322223335678999999998666555 889999998765443222


Q ss_pred             cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      ......+.+++++++|+.+++...++.|.+|+..+.............+.+++++|+|+++++...++.|.+||...+..
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            23346789999999999877777788999998766554432223334678999999999777777789999999887665


Q ss_pred             eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  661 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L  661 (670)
                      ......+...+.+++++++|.++++...++.|.+|+.......               .........+.+++++++|.++
T Consensus       184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST---------------VLPFTGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE---------------ECCCCSCSCEEEEEECTTCCEE
T ss_pred             EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce---------------eeccCCCCCceeEEECCCCCEE
Confidence            4433334467899999999988888878899999998653211               0111223568999999999988


Q ss_pred             EEeeCCC
Q 005913          662 AAGALSK  668 (670)
Q Consensus       662 a~gs~dg  668 (670)
                      ++...++
T Consensus       249 v~~~~~~  255 (270)
T 1rwi_B          249 VADRGND  255 (270)
T ss_dssp             EEEGGGT
T ss_pred             EEECCCC
Confidence            7776554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=1.8e-14  Score=166.38  Aligned_cols=225  Identities=8%  Similarity=-0.040  Sum_probs=156.8

Q ss_pred             cCccCEEEEEEcCCCCEEE-----EEeCCCeEEEEeCCCCceeEEeeCCCccE--eEEEEecCCCEEEEEECCCc-----
Q 005913          419 GHSGPVYSASFSPLGDFIL-----SSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHDRT-----  486 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~-----s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~g~~l~s~s~dg~-----  486 (670)
                      +|...+.+++|||||++|+     .|+.+.+|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4666799999999999988     33445789999999887641  1121122  67999999999999998876     


Q ss_pred             --------EEEEECCCCce--eEEec--ccCCCeeEEEEcCCCCEEEEEEcCC----cEEEEECCCCcEEEEEecCCCCe
Q 005913          487 --------ARIWSMDRIQP--LRIMA--GHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGECVRIFIGHRSMI  550 (670)
Q Consensus       487 --------v~lwd~~~~~~--~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg----~I~iwd~~~~~~~~~~~~h~~~I  550 (670)
                              |++|++.++..  ...+.  .+...+.++.|+|+|++|+.++.++    .|++||..++... .+..+...+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCce
Confidence                    99999988763  23333  3446788999999999999887766    7888877666544 444555566


Q ss_pred             EEEEEcCCCCEEEEEEC----CCeEEEEeCCCCee--eEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          551 LSLAMSPDGRYMASGDE----DGTIMMWDLASGRC--VTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       551 ~~l~~sp~g~~l~sg~~----dg~I~iwDl~~~~~--~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      ....+ ++|. ++..+.    ++.|.+||+.++..  ...+..|  ...|.+++|+ ++.++++...|+..+||.+....
T Consensus       275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence            66666 6666 554443    68999999987753  2333333  4568888998 77889999999998888765311


Q ss_pred             cccccccccCCcccccccccCCC-CCCeEEEEEecCCcEEEE
Q 005913          623 KVLKTEEKSGTNRLRSLKTLPTK-STPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~fs~~~~~La~  663 (670)
                      .              .+..+..+ ...|..++++|++..++.
T Consensus       352 ~--------------~~~~l~~~~~~~v~~~~~s~d~~~l~~  379 (695)
T 2bkl_A          352 K--------------PVRTVQLPGVGAASNLMGLEDLDDAYY  379 (695)
T ss_dssp             C--------------EEEECCCSSSSEECCCBSCTTCSEEEE
T ss_pred             C--------------eeEEecCCCCeEEEEeecCCCCCEEEE
Confidence            1              01112222 345667777777765553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=6.1e-13  Score=136.88  Aligned_cols=246  Identities=9%  Similarity=0.066  Sum_probs=172.6

Q ss_pred             ecCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913          348 INTHNGLNCASISQDGSLVAG-------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~-------g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (670)
                      ...-....+++|++++.++++       +..++.|.+|+..+......                        ......++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------------~~~~~~~~   69 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------------------------CKPEVNGY   69 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE------------------------ECCEETTE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE------------------------EecccCCC
Confidence            344456789999999998888       57788999998654211000                        00000124


Q ss_pred             ccCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEE-eeC----CCccEeEEEEecCCCEEEEEECC----------
Q 005913          421 SGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVC-YKG----HNYPVWDVQFNPQGHYFASSSHD----------  484 (670)
Q Consensus       421 ~~~V~~l~~sp~-~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~----h~~~V~~l~~sp~g~~l~s~s~d----------  484 (670)
                      ...+.+++++++ ++++++.. .+.|.+||.. ++.... ...    ....+.+++++++|..+++...+          
T Consensus        70 ~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~  147 (314)
T 1pjx_A           70 GGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             ECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             CCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence            467899999999 66555444 4479999988 554332 221    12358899999999887777655          


Q ss_pred             -----CcEEEEECCCCceeEEecccCCCeeEEEEc----CCCCEEEEE-EcCCcEEEEECC-CCcE-----EEEEecCC-
Q 005913          485 -----RTARIWSMDRIQPLRIMAGHLSDVDCVRWH----INCNYIATG-SSDKTVRLWDVS-SGEC-----VRIFIGHR-  547 (670)
Q Consensus       485 -----g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~----p~~~~l~tg-s~dg~I~iwd~~-~~~~-----~~~~~~h~-  547 (670)
                           +.|..|+.+ ++... +..+......++|+    |+++.++++ ..++.|.+||+. +++.     ...+..+. 
T Consensus       148 ~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  225 (314)
T 1pjx_A          148 MQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             TSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             ccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence                 567777765 44433 33344567889999    999766655 467899999986 4542     22233333 


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEE-EEEECCCcEEEEeCCCC
Q 005913          548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTS  621 (670)
Q Consensus       548 ~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l-~sgs~Dg~I~iwd~~~~  621 (670)
                      ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+++|+.| ++...++.|..|++...
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            567899999999988888888999999998788777777777789999999999955 45556689999998753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=4.9e-12  Score=128.73  Aligned_cols=254  Identities=6%  Similarity=-0.038  Sum_probs=177.8

Q ss_pred             ceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCC
Q 005913          331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR  410 (670)
Q Consensus       331 ~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (670)
                      .+..++.. .....+........+.+++++++|.+.++...++.|..|+....  .                        
T Consensus        37 ~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~------------------------   89 (299)
T 2z2n_A           37 MISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--I------------------------   89 (299)
T ss_dssp             EEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--E------------------------
T ss_pred             cEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--E------------------------
Confidence            44444444 33333332234567999999999998888777888999986520  0                        


Q ss_pred             ccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-EeeCCCccEeEEEEecCCCEEEEEECCCcEEE
Q 005913          411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARI  489 (670)
Q Consensus       411 ~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~l  489 (670)
                        ...........+.++++.+++.++++...++.|..||. ++.... ....+...+.++++.++|..+++...++.|..
T Consensus        90 --~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A           90 --KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             --EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             --EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence              00011123457889999999988888777889999998 444332 22334556889999999988777767789999


Q ss_pred             EECCCCceeEE-ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          490 WSMDRIQPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       490 wd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      ||. +++.... ...+...+.+++++++++.+++...++.|.+||. +++.... ...+...+.+++++++|+++++...
T Consensus       167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence            999 5554433 3334566889999999997777666889999999 6664432 2234467899999999997776667


Q ss_pred             CCeEEEEeCCCCeeeEEe--eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          568 DGTIMMWDLASGRCVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~~~--~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ++.|..||. ++.. ..+  ..+...+.++++ ++|.++++.+ .+.|..++..+
T Consensus       245 ~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          245 ANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             TTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred             CceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence            899999998 4543 333  344567899999 8888777655 56777777654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=3e-13  Score=137.55  Aligned_cols=190  Identities=11%  Similarity=0.090  Sum_probs=158.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCC-ccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC-CCee
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVD  509 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~-~~v~  509 (670)
                      .++.|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+..+. ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46789999999999999999999999988776 4788999999999888  45788999999 788888887643 4688


Q ss_pred             EEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEEec------CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913          510 CVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       510 ~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~------h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                      ++.+.++|+++++.+. ++.|..+|. +|+.+..+..      +......+++.++|+++++...++.|..||.. |+.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            8999999999999887 788888885 7887776642      22245567889999999999999999999987 9998


Q ss_pred             EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      .++..+ ..+.++...++|+++++++.++.|..+|..+++.....
T Consensus       159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            888764 34567888899999999999999999999887765544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=1.5e-11  Score=137.50  Aligned_cols=284  Identities=9%  Similarity=0.021  Sum_probs=193.3

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      +.....+.++.|||||+++++++.++.|.+||+....                          ......+... .....+
T Consensus       193 i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t--------------------------~~~v~~i~~G-~~P~~i  245 (567)
T 1qks_A          193 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--------------------------PTTVAEIKIG-SEARSI  245 (567)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS--------------------------CCEEEEEECC-SEEEEE
T ss_pred             EeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC--------------------------CcEeEEEecC-CCCcee
Confidence            3344567899999999999999999999999985100                          1122222222 235789


Q ss_pred             EEc----CCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCC-----------CccEeEEEEecCCCEEEE-EECCCcEEEE
Q 005913          428 SFS----PLGDFILSSSA-DTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQFNPQGHYFAS-SSHDRTARIW  490 (670)
Q Consensus       428 ~~s----p~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~l~~sp~g~~l~s-~s~dg~v~lw  490 (670)
                      +|+    |+|+++++++. +++|.++|..+.+.+..+...           ...+..+..++++..++. ...+|.|.++
T Consensus       246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v  325 (567)
T 1qks_A          246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  325 (567)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence            999    69998887664 599999999999888776532           125778888887665444 4566999999


Q ss_pred             ECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEec-----CCCCeEEEEEcCCCCEE-
Q 005913          491 SMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG-----HRSMILSLAMSPDGRYM-  562 (670)
Q Consensus       491 d~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~-----h~~~I~~l~~sp~g~~l-  562 (670)
                      |....+...... .......++.|+|+++++++++ .++.|.++|+.+++.+..+..     |.+.-..+ ++|++..+ 
T Consensus       326 d~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~  404 (567)
T 1qks_A          326 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVW  404 (567)
T ss_dssp             ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEE
T ss_pred             ecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEE
Confidence            987754332221 2334567889999999988766 578999999999988776653     32212222 68875544 


Q ss_pred             EEEE-CCCeEEEEeCCC-------CeeeEEeeCCCcceEEEEEcCCCCEEEEEEC-------CCcEEEEeCCCCcc---c
Q 005913          563 ASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSA-------DCTVKLWDVTTSTK---V  624 (670)
Q Consensus       563 ~sg~-~dg~I~iwDl~~-------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~-------Dg~I~iwd~~~~~~---~  624 (670)
                      +++. .++.|.++|..+       .+.+.++......-..+..+|++++|.+...       .++|.|+|+.+...   .
T Consensus       405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~  484 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD  484 (567)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred             EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence            4443 568999999988       6777777755433344678999999988763       35999999987511   0


Q ss_pred             cccccccCCccccccc---ccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          625 LKTEEKSGTNRLRSLK---TLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       625 ~~~~~~~~~~~~~~~~---~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      ...       ....+.   .++.....+..+.|+++|..+.++..
T Consensus       485 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~  522 (567)
T 1qks_A          485 PEF-------KTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVW  522 (567)
T ss_dssp             CCE-------EEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred             CCc-------EEeccccccccCCCCcceEeeeECCCCCEEEEEee
Confidence            000       000011   12223456899999999987776643

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.56  E-value=1.6e-13  Score=159.50  Aligned_cols=238  Identities=15%  Similarity=0.064  Sum_probs=166.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          353 GLNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~d-----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      .+..++|||||++||.+..+     ..|++||+.+...                            .. ...+...+.++
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~----------------------------~~-~~~~~~~~~~~  214 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP----------------------------LA-DELKWVKFSGL  214 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE----------------------------EE-EEEEEEESCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----------------------------CC-ccCCCceeccE
Confidence            58899999999999987654     3599999875221                            11 11111223578


Q ss_pred             EEcCCCCEEEEEeCCCe--------------EEEEeCCCCce--eEEeeCC--CccEeEEEEecCCCEEEEEECCC----
Q 005913          428 SFSPLGDFILSSSADTT--------------IRLWSTKLNAN--LVCYKGH--NYPVWDVQFNPQGHYFASSSHDR----  485 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~--------------I~lwd~~~~~~--~~~~~~h--~~~V~~l~~sp~g~~l~s~s~dg----  485 (670)
                      +|+|| +.|+.++.++.              |++|++.++..  ...+...  ...+.++.|+|+|++++..+.++    
T Consensus       215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  293 (741)
T 1yr2_A          215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV  293 (741)
T ss_dssp             EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred             EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence            99999 99988877654              89999987653  3344433  33588999999999988887554    


Q ss_pred             -cEEEEECCCC--ceeEEecccCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCC--cEEEEEecCCCCeEEEEEc
Q 005913          486 -TARIWSMDRI--QPLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSG--ECVRIFIGHRSMILSLAMS  556 (670)
Q Consensus       486 -~v~lwd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~--~~~~~~~~h~~~I~~l~~s  556 (670)
                       .|++||+.++  .+...+..+...+.... +|+|+.|+..+.+    +.|.+||+.++  .....+..+...+..++++
T Consensus       294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred             ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence             8999999876  41455555555555554 4899988887764    45999999875  3444444455556778887


Q ss_pred             CCCCEEEEEECCCeEEEEeCC-CCeeeEEeeC-CCcceEEEEEcCCCCEEEEE-E---CCCcEEEEeCCCCc
Q 005913          557 PDGRYMASGDEDGTIMMWDLA-SGRCVTPLMG-HTSCVWTLAYSCEGSLLASG-S---ADCTVKLWDVTTST  622 (670)
Q Consensus       557 p~g~~l~sg~~dg~I~iwDl~-~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sg-s---~Dg~I~iwd~~~~~  622 (670)
                       ++.++++...||..++|.+. ++..+..+.. +.+.|..++++|++..|+.. +   ..++|.+||+.++.
T Consensus       373 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          373 -GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             -BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             66778888889987777554 4556666654 36778999999998755533 2   34789999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=2.4e-12  Score=134.31  Aligned_cols=223  Identities=10%  Similarity=-0.018  Sum_probs=163.1

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      ....++.+. ++...++...++.|.+||..+++.+..+.. ......+++++++..+++...++.|.+||..+++....+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            345677775 345555666689999999999998888864 456789999999854444448899999999998877766


Q ss_pred             cccC-----CCeeEEEEcCCCCEEEEEE--cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC------
Q 005913          502 AGHL-----SDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED------  568 (670)
Q Consensus       502 ~~~~-----~~v~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d------  568 (670)
                      ....     .....+++  ++..++++.  .++.|.+||+.+++.+..+... .....++++|+|++++++..+      
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~  198 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPY  198 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcc
Confidence            5332     14567777  345555554  4889999999999988877643 345789999999977776654      


Q ss_pred             ----CeEEEEeCCCCeeeEEeeCC-CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccC
Q 005913          569 ----GTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLP  643 (670)
Q Consensus       569 ----g~I~iwDl~~~~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (670)
                          +.|.+||..+++....+... ......++|+|+++.|+++..  .|.+||..++....             ....+
T Consensus       199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-------------~~~~~  263 (328)
T 3dsm_A          199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-------------RPFLE  263 (328)
T ss_dssp             CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-------------SCSBC
T ss_pred             ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-------------eeeec
Confidence                79999999999887776543 236789999999998888755  89999987754210             01111


Q ss_pred             CCCCCeEEEEEec-CCcEEEEe
Q 005913          644 TKSTPVYSLQFSR-RNLLFAAG  664 (670)
Q Consensus       644 ~~~~~V~~l~fs~-~~~~La~g  664 (670)
                      .......+++++| ++.++++.
T Consensus       264 ~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          264 FRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEE
T ss_pred             CCCCceEEEEEcCCCCeEEEEc
Confidence            2245688999999 56666665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=1.4e-12  Score=135.98  Aligned_cols=234  Identities=7%  Similarity=-0.075  Sum_probs=168.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      ...+.+. ++++.++...++.|.+||..+..                            ....+. .......+++++++
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~----------------------------~~~~i~-~~~~p~~i~~~~~g   95 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFK----------------------------EVGRIT-GFTSPRYIHFLSDE   95 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCC----------------------------EEEEEE-CCSSEEEEEEEETT
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccE----------------------------EEEEcC-CCCCCcEEEEeCCC
Confidence            4556664 35555666668999999987522                            222222 34668899999988


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCC-----ccEeEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecccCC
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHN-----YPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLS  506 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-----~~V~~l~~sp~g~~l~s~s--~dg~v~lwd~~~~~~~~~~~~~~~  506 (670)
                      ...++...++.|.+||..+++....+....     .....+++ .++ .+++++  .+++|.+||..+++.+..+... .
T Consensus        96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~  172 (328)
T 3dsm_A           96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDELTIG-I  172 (328)
T ss_dssp             EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence            544444488999999999988776666433     13456777 344 455554  4899999999999888777643 4


Q ss_pred             CeeEEEEcCCCCEEEEEEcC----------CcEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          507 DVDCVRWHINCNYIATGSSD----------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tgs~d----------g~I~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                      ....++++|+|++++++..+          +.|.+||..+++....+... ......++|+|+++.|+++..  .|.+||
T Consensus       173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d  250 (328)
T 3dsm_A          173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMP  250 (328)
T ss_dssp             CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred             CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence            56788999999977776554          78999999999887766532 236889999999999988765  899999


Q ss_pred             CCCCeeeEE--eeCCCcceEEEEEcC-CCCEEEEE----ECCCcEEEEeCCCCcc
Q 005913          576 LASGRCVTP--LMGHTSCVWTLAYSC-EGSLLASG----SADCTVKLWDVTTSTK  623 (670)
Q Consensus       576 l~~~~~~~~--~~~h~~~V~sl~~s~-~g~~l~sg----s~Dg~I~iwd~~~~~~  623 (670)
                      ..+++....  +..+......++++| ++.++++.    ..++.|.+||.. ++.
T Consensus       251 ~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          251 VEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             TTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             CCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence            988875421  222245688999999 56666666    578999999987 543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.54  E-value=5.8e-13  Score=154.82  Aligned_cols=226  Identities=13%  Similarity=0.028  Sum_probs=156.8

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc--------
Q 005913          420 HSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT--------  486 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~--------  486 (670)
                      |...+.+++|||||++|+.++.+     .+|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44578899999999999877643     4699999999887543 112222467899999 99998887654        


Q ss_pred             ------EEEEECCCCce--eEEecc--cCCCeeEEEEcCCCCEEEEEEcCC-----cEEEEECCCC--cEEEEEecCCCC
Q 005913          487 ------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSG--ECVRIFIGHRSM  549 (670)
Q Consensus       487 ------v~lwd~~~~~~--~~~~~~--~~~~v~~v~~~p~~~~l~tgs~dg-----~I~iwd~~~~--~~~~~~~~h~~~  549 (670)
                            |++|++.++..  ...+..  +...+..+.|+|+|++|+..+.++     .|++||+.++  ++...+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  89999977653  233333  323588999999999999887654     8999999887  424555556555


Q ss_pred             eEEEEEcCCCCEEEEEEC----CCeEEEEeCCCC--eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          550 ILSLAMSPDGRYMASGDE----DGTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~----dg~I~iwDl~~~--~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +.... +|+|+.|+..+.    ++.|.+||+.++  .....+..+...+.+++|+ ++.++++...|+..+||.+.....
T Consensus       319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  396 (741)
T 1yr2_A          319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK  396 (741)
T ss_dssp             CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred             eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            55553 589998888775    456999999874  3333344455567778887 667888999999888886652111


Q ss_pred             ccccccccCCcccccccccCC-CCCCeEEEEEecCCcEEEE
Q 005913          624 VLKTEEKSGTNRLRSLKTLPT-KSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fs~~~~~La~  663 (670)
                                    .+..+.. ....|..++++|++..++.
T Consensus       397 --------------~~~~l~~~~~~~v~~~~~s~d~~~l~~  423 (741)
T 1yr2_A          397 --------------PAGAVSLPGIGSASGLSGRPGDRHAYL  423 (741)
T ss_dssp             --------------EEEECBCSSSCEEEEEECCBTCSCEEE
T ss_pred             --------------ceeeccCCCCeEEEEeecCCCCCEEEE
Confidence                          0112221 2456888999998875553

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=2.1e-11  Score=136.19  Aligned_cols=266  Identities=11%  Similarity=0.077  Sum_probs=184.6

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe
Q 005913          361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS  440 (670)
Q Consensus       361 ~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s  440 (670)
                      +.+.++++...++.|.+||..+..                            ....+. ....+.++.|+|+|+++++++
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~----------------------------v~~~i~-~g~~p~~v~~SpDGr~lyv~~  215 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE----------------------------IKTVLD-TGYAVHISRLSASGRYLFVIG  215 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC----------------------------EEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe----------------------------EEEEEe-CCCCccceEECCCCCEEEEEc
Confidence            344566677788999999987521                            222222 223567899999999999999


Q ss_pred             CCCeEEEEeCC--CCceeEEeeCCCccEeEEEEe----cCCCEEEEEE-CCCcEEEEECCCCceeEEeccc---------
Q 005913          441 ADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFN----PQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH---------  504 (670)
Q Consensus       441 ~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~s----p~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~---------  504 (670)
                      .|+.|.+||+.  +.+.+..+..... ...++|+    |+|+++++++ .++++.++|..+.+++..+...         
T Consensus       216 ~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~  294 (567)
T 1qks_A          216 RDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  294 (567)
T ss_dssp             TTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             CCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence            99999999995  7777777775444 5789999    6999888776 4589999999999988876522         


Q ss_pred             --CCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCC
Q 005913          505 --LSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG  579 (670)
Q Consensus       505 --~~~v~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~  579 (670)
                        ...+..+..++++..++ ....+|.|.++|..+.+..... ........++.|+|+|++++++. .++.|.++|+.++
T Consensus       295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence              12577888888766544 4456799999999876433222 22344577899999999887765 6789999999999


Q ss_pred             eeeEEeeC-----CCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEE
Q 005913          580 RCVTPLMG-----HTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL  652 (670)
Q Consensus       580 ~~~~~~~~-----h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  652 (670)
                      +.+..+..     |.+.-..+ ++|++. .++++. .+++|.++|.......        ...+..+.++......-..+
T Consensus       375 kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~--------~~~~kvv~~i~~~g~g~~~i  445 (567)
T 1qks_A          375 KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP--------DNAWKILDSFPALGGGSLFI  445 (567)
T ss_dssp             EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT--------TTBTSEEEEEECSCSCCCCE
T ss_pred             cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc--------cccCEEEEEEecCCCCCEEE
Confidence            88766653     43322222 578744 444543 5689999998863211        11123344444433333456


Q ss_pred             EEecCCcEEEEee
Q 005913          653 QFSRRNLLFAAGA  665 (670)
Q Consensus       653 ~fs~~~~~La~gs  665 (670)
                      +++|+++.|.+..
T Consensus       446 ~~~p~~~~l~v~~  458 (567)
T 1qks_A          446 KTHPNSQYLYVDA  458 (567)
T ss_dssp             ECCTTCSEEEEEC
T ss_pred             EeCCCCCeEEEec
Confidence            7889888777654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.52  E-value=6.5e-12  Score=135.22  Aligned_cols=233  Identities=10%  Similarity=0.115  Sum_probs=166.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      ....++|+++++++++...++.|++|+..+..                            ....... ..... ++|+++
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~----------------------------~~~~~~~-~~~~~-ia~~~~  181 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK----------------------------VTTVHPG-FKGGK-PAVTKD  181 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTE----------------------------EEEEEET-CCBCB-CEECTT
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCE----------------------------EEEeecc-CCCCc-eeEecC
Confidence            57899999999988888888999999986411                            1111222 22223 899999


Q ss_pred             CCEEEEEeCCC--eEEEEeCCCCceeEEe----eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE----ec
Q 005913          433 GDFILSSSADT--TIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI----MA  502 (670)
Q Consensus       433 ~~~L~s~s~Dg--~I~lwd~~~~~~~~~~----~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~----~~  502 (670)
                      ++.|+++..++  .|.+|+...+.....+    ......+++++++|++..|+++..++.|+.||..++.....    ..
T Consensus       182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~  261 (409)
T 3hrp_A          182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS  261 (409)
T ss_dssp             SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred             CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence            99999888766  7889988765543333    21445678999999555566677788999999987653332    22


Q ss_pred             ccCCCe--eEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCC---------------CCeEEEEEcCCCCEEEE
Q 005913          503 GHLSDV--DCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHR---------------SMILSLAMSPDGRYMAS  564 (670)
Q Consensus       503 ~~~~~v--~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~---------------~~I~~l~~sp~g~~l~s  564 (670)
                      ++...-  ..++|+|+ +..+++...++.|+.|+....  +..+.++.               .....++++|+|+++++
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            222222  29999995 555556666789999997643  33444432               34789999999997777


Q ss_pred             EE-CCCeEEEEeCCCCeeeEEeeCC---------------CcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          565 GD-EDGTIMMWDLASGRCVTPLMGH---------------TSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       565 g~-~dg~I~iwDl~~~~~~~~~~~h---------------~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      -. .++.|+.||+.++.. ..+.++               -.....++++++|.++++-..++.|+.+++
T Consensus       340 d~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            77 789999999877764 334333               135789999999988888888899988875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=1.3e-11  Score=126.62  Aligned_cols=225  Identities=14%  Similarity=0.177  Sum_probs=159.0

Q ss_pred             CEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       353 ~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ---+..|+++ +.++++...++.|..|+..+..                             ... ......+.++++++
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-----------------------------~~~-~~~~~~~~~i~~~~   63 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-----------------------------VQR-VTMDAPVSSVALRQ   63 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-----------------------------EEE-EECSSCEEEEEEBT
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCc-----------------------------EEE-EeCCCceEEEEECC
Confidence            3568899995 5566677778999999976411                             111 12346789999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeC----CCccEeEEEEecCCCEEEEEECC---------CcEEEEECCCCcee
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSHD---------RTARIWSMDRIQPL  498 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~d---------g~v~lwd~~~~~~~  498 (670)
                      +|+++++ . ++.|.+||..+++.......    ....+.+++++|+|+++++....         ..-.+|.++.....
T Consensus        64 dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~  141 (297)
T 3g4e_A           64 SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV  141 (297)
T ss_dssp             TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred             CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence            9995554 4 56799999987765433322    13457899999999976654322         23455555432233


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEE-EEcCCcEEEEEC--CCCcEE--EEE---ecCCCCeEEEEEcCCCCEEEEEECCCe
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDV--SSGECV--RIF---IGHRSMILSLAMSPDGRYMASGDEDGT  570 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~t-gs~dg~I~iwd~--~~~~~~--~~~---~~h~~~I~~l~~sp~g~~l~sg~~dg~  570 (670)
                      ..+..+....+.++|+|+++.|+. .+.++.|.+||+  .++...  +.+   ..+.+....++++++|++.++....+.
T Consensus       142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~  221 (297)
T 3g4e_A          142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR  221 (297)
T ss_dssp             EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred             EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence            333444556789999999987755 455789999987  455432  222   233456889999999998888888899


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEc-CCCCEEEEEEC
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSA  609 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s-~~g~~l~sgs~  609 (670)
                      |.+||..+++.+..+..+...+++++|+ |+++.|+.++.
T Consensus       222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            9999999999998888887789999998 88877665554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=8.3e-12  Score=128.35  Aligned_cols=230  Identities=10%  Similarity=0.087  Sum_probs=160.8

Q ss_pred             ecCccCEEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCceeEEee----CCCccEeEEEEecC-CCEEEEEECCC
Q 005913          418 QGHSGPVYSASFSPLGDFILS-------SSADTTIRLWSTKLNANLVCYK----GHNYPVWDVQFNPQ-GHYFASSSHDR  485 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s-------~s~Dg~I~lwd~~~~~~~~~~~----~h~~~V~~l~~sp~-g~~l~s~s~dg  485 (670)
                      ...-....+++|++++.++++       ++.++.|.+||..+++......    ++...+.+++++++ |..++ ++..+
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCC
Confidence            344456689999999988777       5778899999988776543222    24456889999999 65444 44455


Q ss_pred             cEEEEECCCCceeEE-ecc----cCCCeeEEEEcCCCCEEEEEEcC---------------CcEEEEECCCCcEEEEEec
Q 005913          486 TARIWSMDRIQPLRI-MAG----HLSDVDCVRWHINCNYIATGSSD---------------KTVRLWDVSSGECVRIFIG  545 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~-~~~----~~~~v~~v~~~p~~~~l~tgs~d---------------g~I~iwd~~~~~~~~~~~~  545 (670)
                      .|.+||.+ ++.... ...    ....+.+++++++|+++++...+               +.|..||.. ++.... ..
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DT  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-cc
Confidence            89999998 654333 221    12458899999999988777655               578888866 554433 33


Q ss_pred             CCCCeEEEEEc----CCCCEEEEE-ECCCeEEEEeCC-CCe-----eeEEeeCCC-cceEEEEEcCCCCEEEEEECCCcE
Q 005913          546 HRSMILSLAMS----PDGRYMASG-DEDGTIMMWDLA-SGR-----CVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTV  613 (670)
Q Consensus       546 h~~~I~~l~~s----p~g~~l~sg-~~dg~I~iwDl~-~~~-----~~~~~~~h~-~~V~sl~~s~~g~~l~sgs~Dg~I  613 (670)
                      +......++|+    |+|+.|+.+ ..++.|.+||+. ++.     ....+..+. ..+..++++++|+++++...++.|
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            44557889999    999766555 467899999986 454     223344444 567899999999999988889999


Q ss_pred             EEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          614 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       614 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      .+||..++..               +..+..+...+.+++|+++|..|.+++.
T Consensus       250 ~~~d~~~g~~---------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          250 EVFGPDGGQP---------------KMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EEECTTCBSC---------------SEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEcCCCCcE---------------eEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            9999875432               1122233467899999999985555443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.48  E-value=8.1e-11  Score=119.68  Aligned_cols=235  Identities=6%  Similarity=-0.030  Sum_probs=166.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ....+.++++++++++.++...++.|..|+... ..                           ...........+.++++
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g-~~---------------------------~~~~~~~~~~~~~~i~~  111 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG-GF---------------------------TEYPLPQPDSGPYGITE  111 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE---------------------------EEEECSSTTCCEEEEEE
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCCC-Ce---------------------------EEecCCCCCCCCccceE
Confidence            346799999999999888776788899998652 11                           00111122356889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeE-EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecccCCC
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSD  507 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~-~~~~~~~  507 (670)
                      .+++.+.++...++.|..|+.. +.... ........+.++++.++|..+++...++.|..|+. +++.... ...+...
T Consensus       112 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  189 (300)
T 2qc5_A          112 GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAA  189 (300)
T ss_dssp             CSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred             CCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCC
Confidence            9999988887778899999987 54432 22334556889999999997666666789999998 4444332 2234567


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE-Ee
Q 005913          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PL  585 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~-~~  585 (670)
                      +.+++++++++..++....+.|.+||. ++..... ...+...+.+++++++|++.++...++.|..||. ++.... .+
T Consensus       190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~  267 (300)
T 2qc5_A          190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQL  267 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEEC
T ss_pred             cceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEEC
Confidence            899999999987777766778999998 5554443 2234566899999999997776666799999998 454332 22


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      ......+.+++++++|+++++.. . .|..++.
T Consensus       268 ~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          268 QTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            33446688999999998666655 4 6666664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=8.4e-13  Score=139.66  Aligned_cols=172  Identities=11%  Similarity=0.023  Sum_probs=139.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      +++.+++++...++++|+.++ +++|++....           ..... .+.. |..++|  ++.+++++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999999999999985 6679865332           12223 3556 999999  89999999 889999999


Q ss_pred             CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                      +.+.........|...+.++.+.+.  .+++++.||.|.+||+.++....    +...|+|++|||+|  ++.|..||.+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            9887766667777788888877654  38889999999999999888754    34579999999999  7889999999


Q ss_pred             EEEeCCCCee--eEEe------e---CCCcceEEEEEcCCCCEEEEEE
Q 005913          572 MMWDLASGRC--VTPL------M---GHTSCVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       572 ~iwDl~~~~~--~~~~------~---~h~~~V~sl~~s~~g~~l~sgs  608 (670)
                      ++|+...+..  ..++      .   +|...|.++.|.+++.++++=+
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999887775  5555      2   4788999999999999888744

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=1.4e-12  Score=137.96  Aligned_cols=182  Identities=14%  Similarity=0.084  Sum_probs=140.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC
Q 005913          353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL  432 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  432 (670)
                      .++.+++++...++++|+.++ +++|++..........   .              ..... .....+.+ |+.++|  +
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~--------------~~~~~-~~~~~lp~-V~~l~f--d   96 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD---S--------------TPLTF-KWEKEIPD-VIFVCF--H   96 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---S--------------CCCCC-SEEEECTT-EEEEEE--E
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---c--------------ccccc-eEEeeCCC-eeEEEE--C
Confidence            588999999999999998875 5569976421100000   0              00011 12234666 999999  8


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~  512 (670)
                      +.+|+++ .++.|++||+.+.........|..++.++.+.+.  .+++++.||.|.+||+.++....    +...|.|++
T Consensus        97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~  169 (388)
T 1xip_A           97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD  169 (388)
T ss_dssp             TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred             CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence            9999999 8899999999887766667778888988877655  39999999999999999877643    446899999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcE--EEEE------e---cCCCCeEEEEEcCCCCEEEEE
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGEC--VRIF------I---GHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~------~---~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      |+|+|  ++.|..||++++|+...+..  ...+      .   +|...|.+|.|.+++.++++=
T Consensus       170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            99999  78899999999999887775  5555      2   367889999999999998873

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.46  E-value=2.1e-11  Score=125.51  Aligned_cols=232  Identities=8%  Similarity=0.051  Sum_probs=162.0

Q ss_pred             EeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          346 TFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .+...........|+++++ +++++..++.|..|+...                              ....+..+...+
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g------------------------------~~~~~~~~~~~~   88 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG------------------------------TVDVLLDATAFT   88 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS------------------------------CEEEEEESCSCE
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC------------------------------CEEEEeCCCCcc
Confidence            3444455678899999998 667777889999998632                              123344456778


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC----CccEeEEEEecCCCEEEE----EEC-------------
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFAS----SSH-------------  483 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~g~~l~s----~s~-------------  483 (670)
                      .+++++++|+++++...++.|.+|+.. +.........    ...+.++++.++|..+++    |..             
T Consensus        89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~  167 (305)
T 3dr2_A           89 NGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA  167 (305)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred             ceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence            999999999977666666889999986 4432221111    134678999999998886    332             


Q ss_pred             CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcE--EEEE-ecCCCCeEEEE
Q 005913          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGEC--VRIF-IGHRSMILSLA  554 (670)
Q Consensus       484 dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~--~~~~-~~h~~~I~~l~  554 (670)
                      .+.|..||..+++.....  .......++|+|+++.|+++...      +.|++||+..+..  ...+ ....+....++
T Consensus       168 ~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~  245 (305)
T 3dr2_A          168 HHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC  245 (305)
T ss_dssp             CEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred             CCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence            246777777666554443  44667889999999988887665      7899999876541  1122 11234456789


Q ss_pred             EcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913          555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (670)
Q Consensus       555 ~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~  614 (670)
                      ++++|++.+ ++.+ .|.+||. .++.+..+..+. .+.+++|+++++.|+.++.++..+
T Consensus       246 ~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          246 VDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             ECTTSCEEE-CCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             ECCCCCEEE-ecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            999999544 4444 4999997 577777776555 588999999998888888765433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=7.8e-11  Score=120.82  Aligned_cols=227  Identities=12%  Similarity=0.109  Sum_probs=153.8

Q ss_pred             CccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 005913          420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       420 h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      +..-.-+..|++++. ++++...++.|+.||..++.. ..+. ....+.+++++++|.++++ . ++.|.+||.++++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            334456788999655 556666789999999987654 3333 3467899999999995544 4 578999999877654


Q ss_pred             EEecc----cCCCeeEEEEcCCCCEEEEEEcC---------CcEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          499 RIMAG----HLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       499 ~~~~~----~~~~v~~v~~~p~~~~l~tgs~d---------g~I~iwd~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      .....    ....++.++++|+|+++++....         ....+|.+.. ++... +..+......++|+|+++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence            33322    12347889999999976654332         2234444432 33333 3334455788999999987755


Q ss_pred             -EECCCeEEEEeC--CCCee-----eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccc
Q 005913          565 -GDEDGTIMMWDL--ASGRC-----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL  636 (670)
Q Consensus       565 -g~~dg~I~iwDl--~~~~~-----~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  636 (670)
                       .+.++.|.+||+  .++..     +..+..+.+.+..++++++|++.++....+.|.+||..++..             
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~-------------  232 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR-------------  232 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE-------------
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE-------------
Confidence             456789999997  45543     222333345678999999999888888888999999876543             


Q ss_pred             ccccccCCCCCCeEEEEEe-cCCcEEEEeeC
Q 005913          637 RSLKTLPTKSTPVYSLQFS-RRNLLFAAGAL  666 (670)
Q Consensus       637 ~~~~~~~~~~~~V~~l~fs-~~~~~La~gs~  666 (670)
                        +..+......+++++|+ |++..|.+++.
T Consensus       233 --~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          233 --LQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             --EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             --EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence              22333344579999998 88765554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.45  E-value=9e-11  Score=122.20  Aligned_cols=222  Identities=10%  Similarity=-0.016  Sum_probs=154.2

Q ss_pred             CEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       353 ~V~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      -..+..|+|+ +.+++++..++.|.+|+..+.                             ....+ .....+.+++|++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-----------------------------~~~~~-~~~~~v~~i~~~~   99 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASG-----------------------------RKTVH-ALPFMGSALAKIS   99 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-----------------------------EEEEE-ECSSCEEEEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-----------------------------cEEEE-ECCCcceEEEEeC
Confidence            3578899997 456667777889999997641                             11111 1245799999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeC----CCccEeEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEe
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~  501 (670)
                      +|++++++ .+ .|.+||..+++.......    ....+.++.++|+|.++++...      .+.|..++  +++. ..+
T Consensus       100 dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~  174 (326)
T 2ghs_A          100 DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL  174 (326)
T ss_dssp             TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE
T ss_pred             CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe
Confidence            99877754 44 499999987765433221    1245889999999987665542      24555555  4443 333


Q ss_pred             cccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECC--CC-cE-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 005913          502 AGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVS--SG-EC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM  572 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~--~~-~~-----~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~  572 (670)
                      ..+......++|+|+++.++.+ +.++.|.+||+.  ++ ..     ...+......+..++++++|.+.++...++.|.
T Consensus       175 ~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          175 FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence            3344567899999999877655 456899999986  55 31     222222345678899999999888777778999


Q ss_pred             EEeCCCCeeeEEeeCCCcceEEEEEc-CCCCEEEEEECC
Q 005913          573 MWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSAD  610 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~~~V~sl~~s-~~g~~l~sgs~D  610 (670)
                      +||. +++.+..+..+...+++++|+ ++++.|+.++..
T Consensus       255 ~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          255 RYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            9998 677777777777789999998 888766555543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=2.9e-11  Score=130.14  Aligned_cols=241  Identities=10%  Similarity=0.045  Sum_probs=163.7

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR  499 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~  499 (670)
                      ....+++|+++++++++...++.|++||..++........... .. ++|++++..++++..++  .|.+|+........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4678999999999777877789999999987766655554333 33 99999999999888766  78888887665544


Q ss_pred             Ee----cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE----EecCCCCe--EEEEEcCC-CCEEEEEECC
Q 005913          500 IM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI----FIGHRSMI--LSLAMSPD-GRYMASGDED  568 (670)
Q Consensus       500 ~~----~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~----~~~h~~~I--~~l~~sp~-g~~l~sg~~d  568 (670)
                      .+    ......+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            44    22456788999999655666677788999999987764332    22222222  39999995 5566666678


Q ss_pred             CeEEEEeCCCCeeeEEeeCCC---------------cceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccC
Q 005913          569 GTIMMWDLASGRCVTPLMGHT---------------SCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSG  632 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h~---------------~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~  632 (670)
                      +.|+.||....  +..+.++.               .....++++++|+++++-+ .++.|+.|++..+...........
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~  366 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV  366 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC
Confidence            89999997643  33333322               3478999999999888887 889999999766542111110000


Q ss_pred             CcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          633 TNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       633 ~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      .....- ......-.....++++++|.++++-..+
T Consensus       367 ~g~~~g-~~~~~~~~~P~giavd~~g~lyVad~~n  400 (409)
T 3hrp_A          367 ASQIDG-TPLEATFNYPYDICYDGEGGYWIAEAWG  400 (409)
T ss_dssp             BSCCCB-STTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred             CCcCCC-ChhceEeCCceEEEEcCCCCEEEEECCC
Confidence            000000 0011123458899999999888776554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.43  E-value=1.9e-10  Score=122.00  Aligned_cols=241  Identities=9%  Similarity=-0.080  Sum_probs=162.6

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       356 ~l~fs~d~~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .++|||||++|+++.          .++.|.+||..+..........                .   ..+..  +.....
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~----------------~---~~~~~--~g~~p~  128 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP----------------D---APRFD--VGPYSW  128 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC----------------C---ccccc--cCCCcc
Confidence            999999999999885          3678999998753221110000                0   00000  012345


Q ss_pred             EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEE-eeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEe
Q 005913          426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      .++|+|+|++|++++.  +++|.++| .+++.+.. +....    ++.+.|++ ..+++.+.||.+.+||. +++.....
T Consensus       129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~  202 (373)
T 2mad_H          129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG  202 (373)
T ss_pred             ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence            7899999999998874  57899999 98887766 54322    24455554 45677788999999999 77766332


Q ss_pred             c-----ccCCC-eeEEEEcCCCCEEEEEEcCCcEEEEECCCCc--EEEEEec----------CCCCeEEEEEcCCCCEEE
Q 005913          502 A-----GHLSD-VDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIG----------HRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       502 ~-----~~~~~-v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~----------h~~~I~~l~~sp~g~~l~  563 (670)
                      .     ....+ .....+.+++..++..+..+.+.+.|+.++.  .+..+..          .......++++|+++.++
T Consensus       203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence            1     11111 1234566666655555578899999997653  2222211          112244578999999888


Q ss_pred             EEEC----------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCccc
Q 005913          564 SGDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKV  624 (670)
Q Consensus       564 sg~~----------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~  624 (670)
                      ++..          .+.|.++|..+++.+.++.. ....+++.|+|||+ .++++. .++.|.+||+.+.+..
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            7653          35899999999999988853 33578999999999 777777 5899999999987654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.42  E-value=1.8e-10  Score=119.96  Aligned_cols=221  Identities=10%  Similarity=-0.000  Sum_probs=150.7

Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          423 PVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       423 ~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      -..+..|+|++. ++++...++.|..||..++... .+. ....+.++.|+++|.++++. . ..|.+||..+++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence            345678999755 5566667889999999876543 333 34579999999999876654 4 45999999887654433


Q ss_pred             cc----cCCCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCe
Q 005913          502 AG----HLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGT  570 (670)
Q Consensus       502 ~~----~~~~v~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~  570 (670)
                      ..    ....+.+++++|+|+++++...      .+.|..++  +++... +..+......++|+|+|+.|+.+ +.++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            21    1235889999999997665543      24566666  455433 33333457799999999877655 45789


Q ss_pred             EEEEeCC--CC-e-----eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913          571 IMMWDLA--SG-R-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL  642 (670)
Q Consensus       571 I~iwDl~--~~-~-----~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  642 (670)
                      |.+||+.  ++ .     .+..+......+..++++++|+++++...++.|.+|+.. +..               +..+
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~---------------~~~i  266 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH---------------IARY  266 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE---------------EEEE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCE---------------EEEE
Confidence            9999986  55 3     122333344567889999999988887778899999973 321               1222


Q ss_pred             CCCCCCeEEEEEe-cCCcEEEEeeC
Q 005913          643 PTKSTPVYSLQFS-RRNLLFAAGAL  666 (670)
Q Consensus       643 ~~~~~~V~~l~fs-~~~~~La~gs~  666 (670)
                      ......+.+++|+ +++..|.+++.
T Consensus       267 ~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          267 EVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ECCCCCcEEEEEecCCCCEEEEEec
Confidence            2334469999998 88766655443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.41  E-value=1.2e-11  Score=142.60  Aligned_cols=236  Identities=13%  Similarity=0.119  Sum_probs=161.0

Q ss_pred             CEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          353 GLNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~-----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      .+..++|||||++||.+.     ....|++||+.+....                          . ..+.+  ....++
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------------------~-~~~~~--~k~~~~  180 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL--------------------------E-TPLKD--VKFSGI  180 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE--------------------------E-EEEEE--EESCCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC--------------------------c-cccCC--ceeccE
Confidence            588899999999999543     2356999998762210                          0 01111  112467


Q ss_pred             EEcCCCCEEEEEeCCCe-------------EEEEeCCCCce--eEEeeC---CCccEeEEEEecCCCEEEEEEC----CC
Q 005913          428 SFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYKG---HNYPVWDVQFNPQGHYFASSSH----DR  485 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~-------------I~lwd~~~~~~--~~~~~~---h~~~V~~l~~sp~g~~l~s~s~----dg  485 (670)
                      +|+ |++.|+.++.+..             |++|++.+...  ...+..   |...+.++.|+|+|++++....    +.
T Consensus       181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  259 (693)
T 3iuj_A          181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN  259 (693)
T ss_dssp             EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred             EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence            899 9999998887743             99999987653  334443   3345778999999998865542    35


Q ss_pred             cEEEEECCCCc-eeEEecccCCCeeEEEEcCCCCEEEEEE-cC---CcEEEEECCCCcE--EEEEecCCCCeEEEEEcCC
Q 005913          486 TARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGS-SD---KTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPD  558 (670)
Q Consensus       486 ~v~lwd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~d---g~I~iwd~~~~~~--~~~~~~h~~~I~~l~~sp~  558 (670)
                      .|++||+.++. ....+..+....... |++++..|+..+ .+   +.|..+|+.++..  .+.+..|...+.  .|+++
T Consensus       260 ~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~  336 (693)
T 3iuj_A          260 RLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG  336 (693)
T ss_dssp             EEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE
T ss_pred             EEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE
Confidence            89999998763 445555565555554 566666655544 33   6799999988754  345666766665  89999


Q ss_pred             CCEEEEEECCC---eEEEEeCCCCeeeEEee-CCCcceEEEEEcCCCCEEEEEECC----CcEEEEeCCCCc
Q 005913          559 GRYMASGDEDG---TIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSAD----CTVKLWDVTTST  622 (670)
Q Consensus       559 g~~l~sg~~dg---~I~iwDl~~~~~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~D----g~I~iwd~~~~~  622 (670)
                      ++.|+....++   .|++||+..+. ...+. ...+.+..+.+++++..|+....+    ++|..||+.++.
T Consensus       337 g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          337 SGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            99887765443   79999987544 44443 344667788888888766655544    789999987764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=7.1e-11  Score=121.57  Aligned_cols=230  Identities=12%  Similarity=0.041  Sum_probs=157.4

Q ss_pred             eeeeecCccCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC
Q 005913          414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       414 ~~~~~~h~~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~  492 (670)
                      ...+..+.....+..|+|+++ +++++..++.|..|+.. +. ...+..+...+..++++++|+.+++...++.|.+|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            334445556778899999998 56677778999999984 44 4455556667899999999986666556688999998


Q ss_pred             CCCceeEEecc----cCCCeeEEEEcCCCCEEEE----EEc-------------CCcEEEEECCCCcEEEEEecCCCCeE
Q 005913          493 DRIQPLRIMAG----HLSDVDCVRWHINCNYIAT----GSS-------------DKTVRLWDVSSGECVRIFIGHRSMIL  551 (670)
Q Consensus       493 ~~~~~~~~~~~----~~~~v~~v~~~p~~~~l~t----gs~-------------dg~I~iwd~~~~~~~~~~~~h~~~I~  551 (670)
                      + ++.......    ....+.+++++|+|+++++    |+.             .+.|..||..+++.....  ......
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~  191 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN  191 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence            6 443322211    1234678999999998886    332             256888888777655443  345578


Q ss_pred             EEEEcCCCCEEEEEECC------CeEEEEeCCCCeeeE---Ee-eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          552 SLAMSPDGRYMASGDED------GTIMMWDLASGRCVT---PL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~~d------g~I~iwDl~~~~~~~---~~-~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .++|+|+|+.|+.+...      +.|.+||+..+. +.   .+ ....+....++++++|++.++. .+ .|.+|+... 
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g-  267 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDG-  267 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTS-
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCC-
Confidence            89999999988887765      789999987654 21   11 1123445678999999955544 44 499998743 


Q ss_pred             ccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          622 TKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ..               +..+.... .+.+++|++++..|.+++.++
T Consensus       268 ~~---------------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          268 QL---------------LGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             CE---------------EEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             CE---------------EEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence            21               22222222 488999999988777776543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.37  E-value=1.3e-09  Score=115.66  Aligned_cols=219  Identities=8%  Similarity=-0.024  Sum_probs=149.7

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEEecCCCEEEEEEC--CCc
Q 005913          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT  486 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~--dg~  486 (670)
                      .++++|||++++++.          .+++|.+||..+.+.+..+...       ......+.|+|+|++++++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998886          3678999999988777665432       123457999999999999874  478


Q ss_pred             EEEEECCCCceeEE-ecccCCCeeEEEEcCCC-CEEEEEEcCCcEEEEECCCCcEEEEEe-----cCCCCe-EEEEEcCC
Q 005913          487 ARIWSMDRIQPLRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI-----GHRSMI-LSLAMSPD  558 (670)
Q Consensus       487 v~lwd~~~~~~~~~-~~~~~~~v~~v~~~p~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~h~~~I-~~l~~sp~  558 (670)
                      |.++| .+++.+.. +...    .|+.+.|.+ +.+++.+.||.+.+||. +++.+....     ....++ ....+.++
T Consensus       150 v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 99888776 5422    234555655 45566778999999999 887763322     111221 23456776


Q ss_pred             CCEEEEEECCCeEEEEeCCCCe--eeEEeeC----------CCcceEEEEEcCCCCEEEEEEC----------CCcEEEE
Q 005913          559 GRYMASGDEDGTIMMWDLASGR--CVTPLMG----------HTSCVWTLAYSCEGSLLASGSA----------DCTVKLW  616 (670)
Q Consensus       559 g~~l~sg~~dg~I~iwDl~~~~--~~~~~~~----------h~~~V~sl~~s~~g~~l~sgs~----------Dg~I~iw  616 (670)
                      +..++..+..+.+.+.|+.++.  .+..+..          .......+.++|+++.++++..          ++.|.++
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence            6655555578899999997552  2222221          1122344788999888777653          3579999


Q ss_pred             eCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc-EEEEeeC
Q 005913          617 DVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGAL  666 (670)
Q Consensus       617 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs~  666 (670)
                      |..+.+.               +.+++.. ....+++|+|+|+ +++++..
T Consensus       304 D~~t~~v---------------v~~i~~g-~~p~~i~~s~Dg~~~l~v~~~  338 (373)
T 2mad_H          304 TGLVGQT---------------SSQISLG-HDVDAISVAQDGGPDLYALSA  338 (373)
T ss_pred             ECCCCEE---------------EEEEECC-CCcCeEEECCCCCeEEEEEcC
Confidence            9887653               2333322 2578999999998 6776653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=3.8e-11  Score=125.92  Aligned_cols=265  Identities=11%  Similarity=0.033  Sum_probs=174.2

Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          352 NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      .....++++++|+++++..  .++.++||.+.. +....   ...              ..    ....+|-..+.++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~---~p~--------------~~----~~~~~~~~~p~gv~~   74 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIP---FPP--------------QS----GNAIITFDTVLGIKS   74 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEE---SCC--------------CC----SSCCCCCSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeec---CCC--------------cc----cCcccceeEeeEEEE
Confidence            5789999999999988863  234366776642 11110   000              00    011246678999999


Q ss_pred             cCCCCEEEEEeC-----CCeEEEEeCCCCceeEEeeCC------CccEeEEEEecCCCE-EEEEE---CCCcEEEEECCC
Q 005913          430 SPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQGHY-FASSS---HDRTARIWSMDR  494 (670)
Q Consensus       430 sp~~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h------~~~V~~l~~sp~g~~-l~s~s---~dg~v~lwd~~~  494 (670)
                      +++++++++-+.     ++.|.+||+.+++.+..+...      ...+.++++++++.. +++..   .++.|.+||+.+
T Consensus        75 d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~  154 (343)
T 2qe8_A           75 DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT  154 (343)
T ss_dssp             CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred             cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence            999886665543     578999999988876666532      234688999986444 45554   678999999998


Q ss_pred             CceeEEecccCCCee-EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC-eEE
Q 005913          495 IQPLRIMAGHLSDVD-CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG-TIM  572 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~-~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg-~I~  572 (670)
                      ++..+.+.+|..... ...+.++|..+.+.+.++.+..|.              ..+..|+|+|+|+.|+.+..++ .|.
T Consensus       155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~  220 (343)
T 2qe8_A          155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMY  220 (343)
T ss_dssp             CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred             CCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEE
Confidence            887777765432111 134455777777777788776653              2357899999999998887766 555


Q ss_pred             EEeCC---CCe-----eeE--EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccccccc
Q 005913          573 MWDLA---SGR-----CVT--PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL  642 (670)
Q Consensus       573 iwDl~---~~~-----~~~--~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  642 (670)
                      .++..   .+.     ...  ...++.+....++++++|+++++...++.|.+||...+..             ..+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-------------~~~~~~  287 (343)
T 2qe8_A          221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-------------KLLVTD  287 (343)
T ss_dssp             EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-------------EEEEEC
T ss_pred             EEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-------------EEEEEC
Confidence            55532   110     000  1113344566799999999999999999999999844321             111111


Q ss_pred             CCCCCCeEEEEEecCCcEEEEeeC
Q 005913          643 PTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       643 ~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      + ....+.+++|++++.++++.+.
T Consensus       288 ~-~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          288 E-KLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             G-GGSCEEEEEECTTSCEEEEECC
T ss_pred             C-ceecCCeeEECCCCcEEEEeCc
Confidence            1 2345889999999988887653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=2.8e-10  Score=119.83  Aligned_cols=243  Identities=12%  Similarity=0.049  Sum_probs=162.2

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       356 ~l~fs~d~~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+++||||++++++.          .++.|.+||..+...........               +.    +  ........
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~---------------g~----r--~~~g~~P~  140 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD---------------AP----R--FLVGTYPW  140 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT---------------CC----C--CCBSCCGG
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC---------------cc----c--cccCCCCc
Confidence            399999999988775          36789999987633221100000               00    0  00011344


Q ss_pred             EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEec
Q 005913          426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMA  502 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~  502 (670)
                      .++|+|||++++++..  +++|.++|+.+++.+..+....+   ...+....+.|++.+.||.+.+.++.. ++......
T Consensus       141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~  217 (386)
T 3sjl_D          141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT  217 (386)
T ss_dssp             GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred             eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec
Confidence            6899999999888864  68999999999998888764332   223444566788889999999999976 55433222


Q ss_pred             ccC----CCe-eEEEEc-CCCCEEEEEEcCCcEEEEECCCCcE--EEEEe---c-------CCCCeEEEEEcCCCCEEEE
Q 005913          503 GHL----SDV-DCVRWH-INCNYIATGSSDKTVRLWDVSSGEC--VRIFI---G-------HRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       503 ~~~----~~v-~~v~~~-p~~~~l~tgs~dg~I~iwd~~~~~~--~~~~~---~-------h~~~I~~l~~sp~g~~l~s  564 (670)
                      .+.    ..+ ....|. ++|++++ .+.+|.|++.|+.++..  +..+.   .       ..+....++++|+++.++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV  296 (386)
T 3sjl_D          218 EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  296 (386)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence            121    111 124554 6775555 55689999999976642  22221   0       1123445788999998887


Q ss_pred             EEC----------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEE-ECCCcEEEEeCCCCccc
Q 005913          565 GDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASG-SADCTVKLWDVTTSTKV  624 (670)
Q Consensus       565 g~~----------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sg-s~Dg~I~iwd~~~~~~~  624 (670)
                      ...          .+.|.++|+.+++.+.++..- ..+++|.+++|++ +|+++ ..++.|.|+|..+++..
T Consensus       297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            643          257999999999999887632 3688999999996 66665 45899999999887643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.31  E-value=7.8e-11  Score=135.72  Aligned_cols=197  Identities=14%  Similarity=0.071  Sum_probs=138.5

Q ss_pred             CccCEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCc--------
Q 005913          420 HSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT--------  486 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~--------  486 (670)
                      |...+.+++|||||++||.+     +...+|++||+.+++.+.... +......++|+ ||+.|+.++.+..        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            45578889999999988843     233579999999988654311 11113578999 9999999988743        


Q ss_pred             -----EEEEECCCCce--eEEecc---cCCCeeEEEEcCCCCEEEEEEc----CCcEEEEECCCCc-EEEEEecCCCCeE
Q 005913          487 -----ARIWSMDRIQP--LRIMAG---HLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGE-CVRIFIGHRSMIL  551 (670)
Q Consensus       487 -----v~lwd~~~~~~--~~~~~~---~~~~v~~v~~~p~~~~l~tgs~----dg~I~iwd~~~~~-~~~~~~~h~~~I~  551 (670)
                           |++|++.+...  ...+..   |...+..+.|+|+|++|+....    +..|++||+.++. ....+..+.....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                 99999987653  333332   3345778999999999876543    2489999998764 4455666666665


Q ss_pred             EEEEcCCCCEEEEEEC----CCeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECCC---cEEEEeCCCC
Q 005913          552 SLAMSPDGRYMASGDE----DGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDVTTS  621 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~~----dg~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg---~I~iwd~~~~  621 (670)
                      .. ++++|..|+..+.    .+.|..||+.++..  ...+..|...+.  .|+++++.|+....++   .|++|++...
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            55 6677766655443    36899999988754  345666766555  8899998877766544   6888988743

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.26  E-value=8.6e-10  Score=116.15  Aligned_cols=257  Identities=14%  Similarity=0.085  Sum_probs=171.2

Q ss_pred             EcCCCCEEEEEeC-----CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          359 ISQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       359 fs~d~~~La~g~~-----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      ..|+++.+.+...     ++.|.+.|..+.                            +....+.....+ . ++++|+|
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----------------------------~v~~~I~vG~~P-~-va~spDG   89 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------RVIGMIDGGFLP-N-PVVADDG   89 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------EEEEEEEECSSC-E-EEECTTS
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCC----------------------------eEEEEEECCCCC-c-EEECCCC
Confidence            3578888887755     578999998752                            222333333344 3 9999999


Q ss_pred             CEEEEEe----------CCCeEEEEeCCCCceeEEeeCCC-------ccEeEEEEecCCCEEEEEEC--CCcEEEEECCC
Q 005913          434 DFILSSS----------ADTTIRLWSTKLNANLVCYKGHN-------YPVWDVQFNPQGHYFASSSH--DRTARIWSMDR  494 (670)
Q Consensus       434 ~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h~-------~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~  494 (670)
                      +++++++          .++.|.+||..+.+.+..+....       ...+.+.++|+|++++++..  ++.|.++|+.+
T Consensus        90 ~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t  169 (386)
T 3sjl_D           90 SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG  169 (386)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC
Confidence            9887765          36789999999998887765321       24567999999999988864  68999999999


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-CcEEEEEecC----CCCeE-EEEEc-CCCCEEEEEEC
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGH----RSMIL-SLAMS-PDGRYMASGDE  567 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~~h----~~~I~-~l~~s-p~g~~l~sg~~  567 (670)
                      .+.+..+....  . ...+....+.+++.+.||.+.+.++.+ ++.......+    ..++. ...|. ++|++++ .+.
T Consensus       170 ~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~  245 (386)
T 3sjl_D          170 KAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTY  245 (386)
T ss_dssp             TEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBT
T ss_pred             CcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeC
Confidence            99988875322  1 223333446777888899999999876 5543322111    12221 24554 6776555 556


Q ss_pred             CCeEEEEeCCCCe--eeEEee---------C-CCcceEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCcccc
Q 005913          568 DGTIMMWDLASGR--CVTPLM---------G-HTSCVWTLAYSCEGSLLASGSA----------DCTVKLWDVTTSTKVL  625 (670)
Q Consensus       568 dg~I~iwDl~~~~--~~~~~~---------~-h~~~V~sl~~s~~g~~l~sgs~----------Dg~I~iwd~~~~~~~~  625 (670)
                      +|.|++.|+.++.  .+..+.         + ..+....++++++++.++....          .+.|.+.|+.+.+.. 
T Consensus       246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~-  324 (386)
T 3sjl_D          246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-  324 (386)
T ss_dssp             TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-
T ss_pred             CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE-
Confidence            8999999997654  333332         0 1123345777999888877643          257889999887543 


Q ss_pred             ccccccCCcccccccccCCCCCCeEEEEEecCCc-EEEEee
Q 005913          626 KTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGA  665 (670)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs  665 (670)
                                    ..++.. .++++++|+++++ +|.++.
T Consensus       325 --------------~~i~vg-~~~~~lavs~D~~~~ly~tn  350 (386)
T 3sjl_D          325 --------------AKFEMG-HEIDSINVSQDEKPLLYALS  350 (386)
T ss_dssp             --------------EEEEEE-EEECEEEECSSSSCEEEEEE
T ss_pred             --------------EEEECC-CCcceEEECCCCCeEEEEEc
Confidence                          222222 3688999999996 555543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.23  E-value=2e-09  Score=115.36  Aligned_cols=198  Identities=8%  Similarity=0.016  Sum_probs=134.4

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEEecCCCEEEEEEC--CCc
Q 005913          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT  486 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~--dg~  486 (670)
                      .++++||+++|+++.          .++.|.++|..+.+.+..+.-.       ......+.++|+|++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999888776          3678999999999888776521       123457899999999999874  578


Q ss_pred             EEEEECCCCceeEEecccCC-------CeeEEEEcCCCCEEEE-------------------------------------
Q 005913          487 ARIWSMDRIQPLRIMAGHLS-------DVDCVRWHINCNYIAT-------------------------------------  522 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~-------~v~~v~~~p~~~~l~t-------------------------------------  522 (670)
                      |.+.|+.+.+.+..+.....       .-..+.++++|++++.                                     
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999999888776653110       0111333344443333                                     


Q ss_pred             EEcCCcEEEEECCCCcEEE--EEec----------CCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEeCCCCe
Q 005913          523 GSSDKTVRLWDVSSGECVR--IFIG----------HRSMILSLAMSPDGRYMASGDE----------DGTIMMWDLASGR  580 (670)
Q Consensus       523 gs~dg~I~iwd~~~~~~~~--~~~~----------h~~~I~~l~~sp~g~~l~sg~~----------dg~I~iwDl~~~~  580 (670)
                      .+..+.|.+.|...+....  .+..          .......++++|+++.+++...          .+.|.++|..+.+
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            2333444444443322110  0000          0011123689999887777642          3579999999999


Q ss_pred             eeEEeeCCCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCccc
Q 005913          581 CVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKV  624 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~  624 (670)
                      .+.++... ...+++.|+|||+ +++++. .++.|.|+|+.+.+..
T Consensus       362 vv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          362 RINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence            99888632 2478999999999 888888 5899999999987653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.19  E-value=5.9e-12  Score=133.64  Aligned_cols=184  Identities=14%  Similarity=0.067  Sum_probs=110.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC-ee-
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VD-  509 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~-v~-  509 (670)
                      ++..+++++.||.|+.||..+++.+..+..  .++.+..+..++..+++++.||.|+.||..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            478899999999999999999999888876  45655556667777888889999999999988877666533211 11 


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC
Q 005913          510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (670)
Q Consensus       510 ~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~  589 (670)
                      +..+ ..+..+++|+.++.|+.||..+|+.+..+..+.    ...++|++..+++++.|+.|+.||..+|+.+..+..+.
T Consensus        86 sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence            0011 135578888899999999999999988776553    24567788899999999999999999998776554221


Q ss_pred             cceEEEEEcCCC---CEEEEEECCCcEEEEeCCCCccc
Q 005913          590 SCVWTLAYSCEG---SLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       590 ~~V~sl~~s~~g---~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                        ....+++.+.   ..+++++.||.|..||..++...
T Consensus       161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             --ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence              1223333332   56777899999999999887654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.17  E-value=1.3e-11  Score=131.02  Aligned_cols=204  Identities=13%  Similarity=0.003  Sum_probs=115.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (670)
Q Consensus       362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~  441 (670)
                      ++..+++|+.||.|..||..+...                            ...+..  +.+.+..+..++..+++++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~----------------------------~W~~~~--~~~~s~p~~~~g~~~v~~s~   57 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI----------------------------KWTLKE--DPVLQVPTHVEEPAFLPDPN   57 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE----------------------------EEEEEC--CCSCCCC-----CCEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE----------------------------EEEecC--CCceecceEcCCCEEEEeCC
Confidence            578899999999999999875322                            111222  33444445566777888889


Q ss_pred             CCeEEEEeCCCCceeEEeeCCCcc-EeE-EEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCE
Q 005913          442 DTTIRLWSTKLNANLVCYKGHNYP-VWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY  519 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~-V~~-l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  519 (670)
                      ||.|+.||..+++.+..+..+... +.+ ..+. .+..+++++.|+.++.||..+++.+..+..+.    ...++|++..
T Consensus        58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~  132 (369)
T 2hz6_A           58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL  132 (369)
T ss_dssp             TCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred             CCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE
Confidence            999999999988887666543211 110 0111 34567888889999999999999887776543    2345678889


Q ss_pred             EEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC---CEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceE-EE
Q 005913          520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TL  595 (670)
Q Consensus       520 l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g---~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~-sl  595 (670)
                      +++++.|+.|+.||.++|+.+..+..+.  ....++++++   ..+++++.||.|+.||..+|+.+..... .+++. ..
T Consensus       133 v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~  209 (369)
T 2hz6_A          133 LYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFY  209 (369)
T ss_dssp             EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEE
T ss_pred             EEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEE
Confidence            9999999999999999998776654221  1223334432   5677888999999999999998877663 33443 34


Q ss_pred             EEcCCCCE
Q 005913          596 AYSCEGSL  603 (670)
Q Consensus       596 ~~s~~g~~  603 (670)
                      .++++|..
T Consensus       210 ~~~~dg~~  217 (369)
T 2hz6_A          210 VWQREGLR  217 (369)
T ss_dssp             ECTTSSCE
T ss_pred             EecCCceE
Confidence            55566643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.07  E-value=3.6e-09  Score=110.78  Aligned_cols=231  Identities=9%  Similarity=0.010  Sum_probs=151.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          350 THNGLNCASISQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~-----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      +-..+.+++|+++++++++...     ++.|.+||+.+..........                      .....+...+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~----------------------~~~~~~~~~~  122 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLP----------------------PPITLSNSFV  122 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECC----------------------TTTSCTTCCC
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECC----------------------hhhccccccc
Confidence            3457999999999987776544     578999998753211110000                      0000123456


Q ss_pred             EEEEEcCCCCEE-EEEe---CCCeEEEEeCCCCceeEEeeCCCccEe-EEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          425 YSASFSPLGDFI-LSSS---ADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       425 ~~l~~sp~~~~L-~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      ..+++++++..+ ++.+   .++.|.+||+.+++....+.+|..... ...+.++|..|.+.+.++.+..|.        
T Consensus       123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------  194 (343)
T 2qe8_A          123 NDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------  194 (343)
T ss_dssp             CEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------
T ss_pred             ceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------
Confidence            789999865554 5544   678999999998877666655432111 144566787787788888876653        


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCC-cEEEEECC---CCc--------EEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDK-TVRLWDVS---SGE--------CVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg-~I~iwd~~---~~~--------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                            ..+..++|+|+++.|+++..++ .|..++..   .+.        .+. ..++.+....++++++|.++++...
T Consensus       195 ------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~  267 (343)
T 2qe8_A          195 ------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLA  267 (343)
T ss_dssp             ------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGG
T ss_pred             ------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccC
Confidence                  2367899999999998887766 55555431   111        011 1234455678999999999999989


Q ss_pred             CCeEEEEeCCCCeeeEEeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          568 DGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      ++.|.+||..+++....... +...+.+++|++++.++++.+..+.+.+|.
T Consensus       268 ~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          268 HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            99999999856664333322 235688999999998888877655554443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.06  E-value=1.8e-08  Score=115.55  Aligned_cols=184  Identities=12%  Similarity=0.074  Sum_probs=132.3

Q ss_pred             CCeEEEEeCCCCceeEEeeCCC------------------------------ccE-eEEEEecCCCEEEEEECCCc----
Q 005913          442 DTTIRLWSTKLNANLVCYKGHN------------------------------YPV-WDVQFNPQGHYFASSSHDRT----  486 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~------------------------------~~V-~~l~~sp~g~~l~s~s~dg~----  486 (670)
                      +|.|+.||..+++.+-.+....                              ..+ ..++++|++..++.++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            7899999999999887665210                              011 25788898888998887764    


Q ss_pred             ---------------EEEEECCCCceeEEecc--cC-------CCeeEEEEcCCCC---EEEEEEcCCcEEEEECCCCcE
Q 005913          487 ---------------ARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC  539 (670)
Q Consensus       487 ---------------v~lwd~~~~~~~~~~~~--~~-------~~v~~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~  539 (670)
                                     |..||.++++.+..+..  |.       ..+.......+|+   .++.++.+|.++++|..+|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           99999999999887764  21       1222223333565   788999999999999999998


Q ss_pred             EEEEecCC----------------------------C-----------CeEEEEEcCCCCEEEEEEC-------------
Q 005913          540 VRIFIGHR----------------------------S-----------MILSLAMSPDGRYMASGDE-------------  567 (670)
Q Consensus       540 ~~~~~~h~----------------------------~-----------~I~~l~~sp~g~~l~sg~~-------------  567 (670)
                      +.......                            .           .-..++++|+..++++...             
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            74432110                            0           0112788998888877532             


Q ss_pred             --------------------------------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913          568 --------------------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (670)
Q Consensus       568 --------------------------------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i  615 (670)
                                                      +|.|..||+.+|+.+-++..+. ++..-.++..+.++++|+.||.|+.
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEE
Confidence                                            3789999999999887776543 2333455667889999999999999


Q ss_pred             EeCCCCccccc
Q 005913          616 WDVTTSTKVLK  626 (670)
Q Consensus       616 wd~~~~~~~~~  626 (670)
                      ||..+++.+..
T Consensus       501 ~D~~tG~~lw~  511 (689)
T 1yiq_A          501 YAADTGEKLWE  511 (689)
T ss_dssp             EETTTCCEEEE
T ss_pred             EECCCCcccee
Confidence            99999876543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.05  E-value=3.8e-08  Score=104.44  Aligned_cols=226  Identities=10%  Similarity=0.092  Sum_probs=152.1

Q ss_pred             EEc--CCCCEEEE-EeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-------cCccCEEEE
Q 005913          358 SIS--QDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-------GHSGPVYSA  427 (670)
Q Consensus       358 ~fs--~d~~~La~-g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l  427 (670)
                      .++  +++++|++ |..++.|.|+|+.+....                        .+......       .....-..+
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~------------------------p~~~k~ie~~~~~~~~g~s~Ph~~  143 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE------------------------PKIIKVIEPEEVKKVSGYSRLHTV  143 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS------------------------CEEEEEECHHHHHHHHCEEEEEEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCC------------------------ceeeeeechhhcccccCCCcccce
Confidence            446  78888775 556788999998642110                        11112220       011234567


Q ss_pred             EEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCc---cEeEEEEecCCCEEEEEE----------------
Q 005913          428 SFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSS----------------  482 (670)
Q Consensus       428 ~~sp~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~---~V~~l~~sp~g~~l~s~s----------------  482 (670)
                      ..+|+| +++++..+      |.|.++|..+++.+..+.....   --.++.|+|+++.+++..                
T Consensus       144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~  222 (462)
T 2ece_A          144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL  222 (462)
T ss_dssp             EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred             eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence            788999 76666555      7899999999999888863222   234688999999888875                


Q ss_pred             ---CCCcEEEEECCCCceeEEeccc--CCCeeEEEE--cCCCCEEEEEEc------CCcEEEEECCCCcE--EEEE--ec
Q 005913          483 ---HDRTARIWSMDRIQPLRIMAGH--LSDVDCVRW--HINCNYIATGSS------DKTVRLWDVSSGEC--VRIF--IG  545 (670)
Q Consensus       483 ---~dg~v~lwd~~~~~~~~~~~~~--~~~v~~v~~--~p~~~~l~tgs~------dg~I~iwd~~~~~~--~~~~--~~  545 (670)
                         .+.+|.+||+.+++.+..+...  ......+.|  +|+++++++++.      +++|.+|....+..  ...+  ..
T Consensus       223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~  302 (462)
T 2ece_A          223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA  302 (462)
T ss_dssp             HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence               3689999999988777776642  123455656  999999988774      56887766554432  1111  11


Q ss_pred             C----------------CCCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCC---CeeeEEeeCC-----------C---cc
Q 005913          546 H----------------RSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS---GRCVTPLMGH-----------T---SC  591 (670)
Q Consensus       546 h----------------~~~I~~l~~sp~g~~l~sg~~-dg~I~iwDl~~---~~~~~~~~~h-----------~---~~  591 (670)
                      .                ......|.+||||++|+++.. .+.|.+||+..   .+.+..+...           .   +.
T Consensus       303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg  382 (462)
T 2ece_A          303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA  382 (462)
T ss_dssp             EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred             ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence            0                234678999999999988764 68999999852   3445444321           0   13


Q ss_pred             eEEEEEcCCCCEEEEEE
Q 005913          592 VWTLAYSCEGSLLASGS  608 (670)
Q Consensus       592 V~sl~~s~~g~~l~sgs  608 (670)
                      ...+.++|||++|+++.
T Consensus       383 Pr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEc
Confidence            57899999999999887

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.05  E-value=1.8e-08  Score=115.27  Aligned_cols=241  Identities=12%  Similarity=0.065  Sum_probs=161.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (670)
Q Consensus       362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~  441 (670)
                      ++..|++++.|+.|..+|..+....-........               . .  .......++    .  .+..+++++.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---------------~-~--~~~~~~~p~----v--~~~~v~v~~~  182 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ---------------K-G--SLTITGAPR----V--FKGKVIIGNG  182 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTC---------------C-S--SCBCCSCCE----E--ETTEEEECCB
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc---------------C-c--CcccccCcE----E--ECCEEEEEec
Confidence            4567888889999999998764332111100000               0 0  000011121    1  1344554443


Q ss_pred             ------CCeEEEEeCCCCceeEEeeCCCcc--------------------------------EeEEEEecCCCEEEEEEC
Q 005913          442 ------DTTIRLWSTKLNANLVCYKGHNYP--------------------------------VWDVQFNPQGHYFASSSH  483 (670)
Q Consensus       442 ------Dg~I~lwd~~~~~~~~~~~~h~~~--------------------------------V~~l~~sp~g~~l~s~s~  483 (670)
                            +|.|+.||..+++.+-.+......                                ...++++|++..++.++.
T Consensus       183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~  262 (677)
T 1kb0_A          183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG  262 (677)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred             ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence                  789999999999988776542211                                124788898888888876


Q ss_pred             CC-------------------cEEEEECCCCceeEEecc--cC-------CCeeEEEEcCCC---CEEEEEEcCCcEEEE
Q 005913          484 DR-------------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINC---NYIATGSSDKTVRLW  532 (670)
Q Consensus       484 dg-------------------~v~lwd~~~~~~~~~~~~--~~-------~~v~~v~~~p~~---~~l~tgs~dg~I~iw  532 (670)
                      ++                   .|..+|.++++.+..+..  |.       .....+....+|   ..+++++.+|.|+++
T Consensus       263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l  342 (677)
T 1kb0_A          263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL  342 (677)
T ss_dssp             CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence            64                   599999999998877663  21       122333444477   688999999999999


Q ss_pred             ECCCCcEEEEEecCC-----------CCe------------------------EEEEEcCCCCEEEEEEC----------
Q 005913          533 DVSSGECVRIFIGHR-----------SMI------------------------LSLAMSPDGRYMASGDE----------  567 (670)
Q Consensus       533 d~~~~~~~~~~~~h~-----------~~I------------------------~~l~~sp~g~~l~sg~~----------  567 (670)
                      |..+|+.+..+....           .++                        ..++++|++.++++...          
T Consensus       343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  422 (677)
T 1kb0_A          343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK  422 (677)
T ss_dssp             ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred             ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence            999999987664221           011                        15688998888877643          


Q ss_pred             ---------------------------------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913          568 ---------------------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (670)
Q Consensus       568 ---------------------------------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~  614 (670)
                                                       .|.|..||+.+++.+-++. +..++.+..++.++.+++.++.||.++
T Consensus       423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~  501 (677)
T 1kb0_A          423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLV  501 (677)
T ss_dssp             TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEE
T ss_pred             ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEE
Confidence                                             2789999999999887765 333445555667788899999999999


Q ss_pred             EEeCCCCcccccc
Q 005913          615 LWDVTTSTKVLKT  627 (670)
Q Consensus       615 iwd~~~~~~~~~~  627 (670)
                      +||..+++.+...
T Consensus       502 a~D~~tG~~lw~~  514 (677)
T 1kb0_A          502 AYHAATGEKLWEA  514 (677)
T ss_dssp             EEETTTCCEEEEE
T ss_pred             EEECCCCceeeee
Confidence            9999998765443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.04  E-value=4.9e-07  Score=90.63  Aligned_cols=221  Identities=10%  Similarity=0.014  Sum_probs=141.4

Q ss_pred             cCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCCcEEEEECCCCceeE
Q 005913          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg~v~lwd~~~~~~~~  499 (670)
                      ..+.+++|++++..|. +....+.|..+++..................+++++++..++.+ ...+.|.+++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4578999999766555 44557899999998655444333333467899999976555544 456799999987544333


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEc---CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD  575 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwD  575 (670)
                      ...........++++|++..|+.+..   .+.|..+++..................++++|++..|+.+. ..+.|.++|
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            33333356789999997666655554   36888888764332222223334578999999877665554 568999999


Q ss_pred             CCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCC-CCeEEEEE
Q 005913          576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS-TPVYSLQF  654 (670)
Q Consensus       576 l~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~l~f  654 (670)
                      +........+... .....++.. ++.++++....+.|.++|..++...               ..++... ...+.+++
T Consensus       196 ~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~---------------~~i~~g~~~~p~gi~~  258 (267)
T 1npe_A          196 PAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM---------------DTFHPHKQTRLYGITI  258 (267)
T ss_dssp             TTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE---------------EEECCSSCCCCCCEEE
T ss_pred             cCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce---------------EEEccccccccceeee
Confidence            9765443333322 334567664 4445555556689999998876432               2222222 23677788


Q ss_pred             ecCCc
Q 005913          655 SRRNL  659 (670)
Q Consensus       655 s~~~~  659 (670)
                      .|++.
T Consensus       259 ~~~~~  263 (267)
T 1npe_A          259 ALSQC  263 (267)
T ss_dssp             ECSCC
T ss_pred             cCccC
Confidence            88764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=4.6e-08  Score=103.81  Aligned_cols=233  Identities=14%  Similarity=0.158  Sum_probs=150.0

Q ss_pred             CCCCEEEE-EeCCCeEEEEeCCCC----ceeEEee-------CCCccEeEEEEecCCCEEEEEECC------CcEEEEEC
Q 005913          431 PLGDFILS-SSADTTIRLWSTKLN----ANLVCYK-------GHNYPVWDVQFNPQGHYFASSSHD------RTARIWSM  492 (670)
Q Consensus       431 p~~~~L~s-~s~Dg~I~lwd~~~~----~~~~~~~-------~h~~~V~~l~~sp~g~~l~s~s~d------g~v~lwd~  492 (670)
                      +++++|++ |..+++|+++|+.+.    +...++.       .....-..+..+|+| .++++..+      |.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77887664 556789999999755    4445452       111234567888999 66666555      78999999


Q ss_pred             CCCceeEEecccCCC---eeEEEEcCCCCEEEEEE-------------------cCCcEEEEECCCCcEEEEEecC-C-C
Q 005913          493 DRIQPLRIMAGHLSD---VDCVRWHINCNYIATGS-------------------SDKTVRLWDVSSGECVRIFIGH-R-S  548 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~---v~~v~~~p~~~~l~tgs-------------------~dg~I~iwd~~~~~~~~~~~~h-~-~  548 (670)
                      .+.+.+..+......   -..+.|+|+++.+++..                   .+.+|.+||+.+++.+..+... . .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            999999888632221   33578899999888874                   3689999999998888777642 1 2


Q ss_pred             CeEEEEE--cCCCCEEEEEE------CCCeEEEEeCCCCee--eEEe--eCC----------------CcceEEEEEcCC
Q 005913          549 MILSLAM--SPDGRYMASGD------EDGTIMMWDLASGRC--VTPL--MGH----------------TSCVWTLAYSCE  600 (670)
Q Consensus       549 ~I~~l~~--sp~g~~l~sg~------~dg~I~iwDl~~~~~--~~~~--~~h----------------~~~V~sl~~s~~  600 (670)
                      ....+.|  +|+|+++++++      .++.|.+|....+..  +..+  ...                ...+..+.+|+|
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            3445656  99999888876      566888776654421  1111  110                134678999999


Q ss_pred             CCEEEEEEC-CCcEEEEeCCCCcccccccc-ccCCcccccccccCCC--CCCeEEEEEecCCcEEEEee
Q 005913          601 GSLLASGSA-DCTVKLWDVTTSTKVLKTEE-KSGTNRLRSLKTLPTK--STPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       601 g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~V~~l~fs~~~~~La~gs  665 (670)
                      |++|.++.. .+.|.+||+........... ..+. .........+.  ...-..+.++|+|++|.++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG-~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG-IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT-TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC-eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            998887764 68999999974322111110 0000 00000000000  11357889999999888876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.03  E-value=1.4e-08  Score=106.92  Aligned_cols=194  Identities=7%  Similarity=-0.046  Sum_probs=127.7

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEEecCCCEEEEEEC--CCc
Q 005913          426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT  486 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~--dg~  486 (670)
                      .+.++||+++++++.          .+++|.+||+.+++.+..+..+       ......+.++|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999888876          3689999999999998887643       123557999999999998874  457


Q ss_pred             EEE--EECCCCceeEEeccc------------------CCCeeEEEE--------------------------cCCCCEE
Q 005913          487 ARI--WSMDRIQPLRIMAGH------------------LSDVDCVRW--------------------------HINCNYI  520 (670)
Q Consensus       487 v~l--wd~~~~~~~~~~~~~------------------~~~v~~v~~--------------------------~p~~~~l  520 (670)
                      +.+  +|..+   +..+...                  .+.+..+..                          .+++..+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  88865   2222100                  000000000                          2223333


Q ss_pred             EEEEcCCcEEEEECCCCc--EEEEEec-------C---CCCeEEEEEcCCCCEEEEEEC---------CCeEEEEeCCCC
Q 005913          521 ATGSSDKTVRLWDVSSGE--CVRIFIG-------H---RSMILSLAMSPDGRYMASGDE---------DGTIMMWDLASG  579 (670)
Q Consensus       521 ~tgs~dg~I~iwd~~~~~--~~~~~~~-------h---~~~I~~l~~sp~g~~l~sg~~---------dg~I~iwDl~~~  579 (670)
                      +..+. +.|.+.|+.++.  .+..+..       +   ......++++|+|+.++.+..         ++.+.++|+.++
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            33333 666677765432  1111110       0   011222789999998887543         235679999999


Q ss_pred             eeeEEeeCCCcceEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCccc
Q 005913          580 RCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKV  624 (670)
Q Consensus       580 ~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs-~Dg~I~iwd~~~~~~~  624 (670)
                      +.+..+.... ....++|+|||+ ++++.. .+++|.|+|+.+.+..
T Consensus       305 ~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          305 QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            9988876443 578999999997 566776 5999999999987643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=9.8e-09  Score=105.94  Aligned_cols=209  Identities=13%  Similarity=0.041  Sum_probs=147.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~  512 (670)
                      +..|..++.++.|..+|.. +.....+..+...+.++...+++. +..++.++.|..||.. ++....+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            5567788888999999998 777666666665667777777776 6667788999999998 777766665566677888


Q ss_pred             EcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcce
Q 005913          513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV  592 (670)
Q Consensus       513 ~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V  592 (670)
                      ..++++.++ ++  +.|..+| .+++....+......+.++...++|. |..++.++.|..+| .++..+..+......+
T Consensus       184 ~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~  257 (330)
T 3hxj_A          184 IGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIE  257 (330)
T ss_dssp             ECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCC
T ss_pred             EcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCcc
Confidence            877877554 44  8899999 78887777766666788889988875 55566788899898 4666666665544445


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       593 ~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      .++.+.+++ .|..++.+|.|..+|. ++...               ..+......+.++...++|.+.+ |+.+|
T Consensus       258 ~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~---------------~~~~~~~~~~~~~~~d~~g~l~~-gt~~G  315 (330)
T 3hxj_A          258 SSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK---------------WNFETGSWIIATPVIDENGTIYF-GTRNG  315 (330)
T ss_dssp             SCCEECTTS-CEEEECTTCEEEEECT-TSCEE---------------EEEECSSCCCSCCEECTTCCEEE-ECTTS
T ss_pred             ccceEcCCC-eEEEecCCCCEEEECC-CCcEE---------------EEEEcCCccccceEEcCCCEEEE-EcCCC
Confidence            556666565 4667788888999985 33321               11122234566777778887554 55555

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.97  E-value=2.9e-07  Score=95.09  Aligned_cols=268  Identities=7%  Similarity=0.037  Sum_probs=157.5

Q ss_pred             CceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       340 ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      |....+.+.+.-....+++|+++++++.++..++.|..|+............  ..  .. ....  ..+..  ......
T Consensus         7 ~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~--~~--~~-~~~~--~~g~~--~~~~~~   77 (322)
T 2fp8_A            7 PILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYA--SP--YW-NKAF--CENST--DAEKRP   77 (322)
T ss_dssp             ---CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEES--CT--TC-CHHH--HTTCC--CGGGHH
T ss_pred             CccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecc--cc--cc-cccc--ccccc--chhccc
Confidence            3333344443334567788999999888888999999998654211100000  00  00 0000  00000  000001


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-----CCccEeEEEEec-CCCEEEEEEC----------
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNP-QGHYFASSSH----------  483 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~l~~sp-~g~~l~s~s~----------  483 (670)
                      ....+.++++.+++..|+.+...+.|..+|..++.. ..+..     ......++++.+ +|..+++...          
T Consensus        78 ~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           78 LCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             HHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred             cCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence            123578999998334455555555688888775432 22221     112467899999 9987666432          


Q ss_pred             -------CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCc--EEEEEecCCCCeEEE
Q 005913          484 -------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGE--CVRIFIGHRSMILSL  553 (670)
Q Consensus       484 -------dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l  553 (670)
                             ++.|..||..+++..... ........++|+|+++.|+++ +..+.|..|++....  ....+....+ ...+
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi  234 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI  234 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred             ehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence                   367888888766543322 223456789999999977665 456899999987521  1222222233 7889


Q ss_pred             EEcCCCCEEEEEEC----------CCeEEEEeCCCCeeeEEeeCCC----cceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          554 AMSPDGRYMASGDE----------DGTIMMWDLASGRCVTPLMGHT----SCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       554 ~~sp~g~~l~sg~~----------dg~I~iwDl~~~~~~~~~~~h~----~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      ++.++|++.++...          .+.|..+|. .++.+..+....    ..++++++ .+++++++....+.|.++++.
T Consensus       235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             EECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            99999987766544          467899986 477776665432    34677776 466666666678899999976


Q ss_pred             CC
Q 005913          620 TS  621 (670)
Q Consensus       620 ~~  621 (670)
                      ..
T Consensus       313 ~~  314 (322)
T 2fp8_A          313 KK  314 (322)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.96  E-value=1.3e-08  Score=111.60  Aligned_cols=228  Identities=12%  Similarity=0.070  Sum_probs=156.0

Q ss_pred             CCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCC-CccEeEEEE-e-cCCCEEEEEE------------------CCCcEE
Q 005913          431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKGH-NYPVWDVQF-N-PQGHYFASSS------------------HDRTAR  488 (670)
Q Consensus       431 p~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~-s-p~g~~l~s~s------------------~dg~v~  488 (670)
                      +||+++..+.. ++.|.+.|+.+.++...+.-. ......+++ + |++.++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37888776654 567999999999987755432 245778887 5 8999998885                  245799


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCC--------------------------------------cEE
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--------------------------------------TVR  530 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg--------------------------------------~I~  530 (670)
                      ++|.++.+....+.-.. ....++++|+|+++++.+.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988888776432 457788999999999988543                                      477


Q ss_pred             EEECCC--CcE-EEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCe------------eeEEeeCCCcceEE
Q 005913          531 LWDVSS--GEC-VRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR------------CVTPLMGHTSCVWT  594 (670)
Q Consensus       531 iwd~~~--~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~------------~~~~~~~h~~~V~s  594 (670)
                      +.|.++  ++. ++.+.. .....++.++|||+++++++ .+..|.++|+.+.+            .+..+. -......
T Consensus       258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h  335 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLH  335 (595)
T ss_dssp             EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEE
T ss_pred             EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcce
Confidence            788877  544 444432 23467899999999877665 67899999998653            233332 2245788


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe-----EEEEEecCCcEEEEeeC
Q 005913          595 LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV-----YSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       595 l~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-----~~l~fs~~~~~La~gs~  666 (670)
                      ++|+++|...++.-.|+.|.+||+.......     .+......+..++.+..|-     .++.++|||++|+++..
T Consensus       336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~-----~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAY-----AGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHHHHHH-----HTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             EEECCCCeEEEEEecCCcEEEEEhhHhhhhh-----cccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            9999999656667789999999987632100     0000112333444443332     23355889998887653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.92  E-value=1e-07  Score=102.01  Aligned_cols=186  Identities=13%  Similarity=0.058  Sum_probs=136.1

Q ss_pred             CCCCEEEEEeC-C----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE----------CCCcEEEEECCCC
Q 005913          431 PLGDFILSSSA-D----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----------HDRTARIWSMDRI  495 (670)
Q Consensus       431 p~~~~L~s~s~-D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s----------~dg~v~lwd~~~~  495 (670)
                      ++++.++++.. +    ++|.++|..+++.+..+.....+  .+.++|+|++++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            35565555544 2    69999999999999888866666  899999999888876          3678999999999


Q ss_pred             ceeEEeccc-------CCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 005913          496 QPLRIMAGH-------LSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASG  565 (670)
Q Consensus       496 ~~~~~~~~~-------~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~sg  565 (670)
                      +.+..+.-.       ......++|+|+|++++++..  ++.|.++|+.+++.+..+....    +....|+| +.+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence            988776521       234567899999999999874  5789999999999988776422    13344543 566677


Q ss_pred             ECCCeEEEEeCCCCeeeEE----eeCCCcce-EEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          566 DEDGTIMMWDLASGRCVTP----LMGHTSCV-WTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       566 ~~dg~I~iwDl~~~~~~~~----~~~h~~~V-~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      +.||.+.+.++.+++....    +.....++ ..+.|++++..++..+..+.|.+.|+....
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG  297 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence            7888888888866654422    11112222 235678998888777888999999987643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.90  E-value=1.4e-07  Score=97.18  Aligned_cols=218  Identities=11%  Similarity=-0.000  Sum_probs=152.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCC
Q 005913          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD  442 (670)
Q Consensus       363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~D  442 (670)
                      +..+.+|+.++.|..++... ..                            ......+...+.++...+++. +..++.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g-~~----------------------------~~~~~~~~~~~~~~~~~~~g~-l~vgt~~  156 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDG-TE----------------------------KWRFKTKKAIYATPIVSEDGT-IYVGSND  156 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTS-CE----------------------------EEEEECSSCCCSCCEECTTSC-EEEECTT
T ss_pred             CCEEEEEecCCEEEEEcCCC-CE----------------------------EEEEcCCCceeeeeEEcCCCE-EEEEcCC
Confidence            45677788888888888651 11                            111112233345556666666 5567778


Q ss_pred             CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE
Q 005913          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT  522 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t  522 (670)
                      +.|..||.. +.....+......+.++...+++..++ ++  +.+..|| .+++....+......+.++...++++ |.+
T Consensus       157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v  230 (330)
T 3hxj_A          157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV  230 (330)
T ss_dssp             SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred             CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE
Confidence            999999998 777766666666677788877777544 44  8899999 67777766665666788888888775 555


Q ss_pred             EEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913          523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (670)
Q Consensus       523 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~  602 (670)
                      ++.++.|..+| .+++.+..+......+.++.+.++| .|..++.+|.|..+|. +++.+..+......+.++..+++|.
T Consensus       231 ~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~  307 (330)
T 3hxj_A          231 TSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT  307 (330)
T ss_dssp             EETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred             EcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence            66788888888 4666666666555545556666566 5667888889999995 7777776665556677788877776


Q ss_pred             EEEEEECCCcEEEEeCCC
Q 005913          603 LLASGSADCTVKLWDVTT  620 (670)
Q Consensus       603 ~l~sgs~Dg~I~iwd~~~  620 (670)
                       |..|+.+|.+++.....
T Consensus       308 -l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          308 -IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             -EEEECTTSCEEEEEC--
T ss_pred             -EEEEcCCCeEEEEeccc
Confidence             55688999999887655

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.89  E-value=1.6e-07  Score=107.33  Aligned_cols=153  Identities=7%  Similarity=0.062  Sum_probs=110.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCC-C----ccEeEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEe
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGH-N----YPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~----~~V~~l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~  501 (670)
                      +..|++++.|+.|..+|..+++.+..+..+ .    ..+.+.-.. .+..+++++.      ++.|+.||..+++.+..+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            567888899999999999999998887754 2    122211111 2345555543      699999999999988776


Q ss_pred             cccCCC--------------------------------eeEEEEcCCCCEEEEEEcCC-------------------cEE
Q 005913          502 AGHLSD--------------------------------VDCVRWHINCNYIATGSSDK-------------------TVR  530 (670)
Q Consensus       502 ~~~~~~--------------------------------v~~v~~~p~~~~l~tgs~dg-------------------~I~  530 (670)
                      ......                                ...++++|+++.+++++.++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            532211                                13578899999999887664                   599


Q ss_pred             EEECCCCcEEEEEecCC---------CCeEEEEEcCCC---CEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          531 LWDVSSGECVRIFIGHR---------SMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       531 iwd~~~~~~~~~~~~h~---------~~I~~l~~sp~g---~~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      .+|..+|+.+..+....         .....+....+|   ..++.++.+|.|+++|..+|+.+..+.
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence            99999999998876421         112233344477   689999999999999999999887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.88  E-value=3.1e-06  Score=84.66  Aligned_cols=220  Identities=9%  Similarity=0.053  Sum_probs=141.4

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       353 ~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      .+.+++|++++..|. +-..++.|.++++.....                            ............++++++
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----------------------------~~~~~~~~~~p~~ia~d~   88 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------------------------TTIIRQDLGSPEGIALDH   88 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------------------------EEEECTTCCCEEEEEEET
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----------------------------EEEEECCCCCccEEEEEe
Confidence            478999999765555 445578899999764110                            111111224678999999


Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC---CCcEEEEECCCCceeEEecccCCC
Q 005913          432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLRIMAGHLSD  507 (670)
Q Consensus       432 ~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---dg~v~lwd~~~~~~~~~~~~~~~~  507 (670)
                      ++..|. +....+.|.++++..................++++|++..++.+..   .+.|..++++..............
T Consensus        89 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~  168 (267)
T 1npe_A           89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL  168 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred             cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCC
Confidence            766555 4455788999998754333333322245689999997666555543   368888888754332222233456


Q ss_pred             eeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      ...++++|++..|+.+. ..+.|..+|.........+.+ ......++.. .+..+++....+.|.++|..+++.+..+.
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            78999999877666554 457899999875544333332 2344567664 34444444466899999999999888876


Q ss_pred             CCC-cceEEEEEcCCCC
Q 005913          587 GHT-SCVWTLAYSCEGS  602 (670)
Q Consensus       587 ~h~-~~V~sl~~s~~g~  602 (670)
                      ... ...+.+++.|++.
T Consensus       247 ~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          247 PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             CSSCCCCCCEEEECSCC
T ss_pred             cccccccceeeecCccC
Confidence            433 2467788887764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.88  E-value=1.1e-07  Score=109.12  Aligned_cols=151  Identities=11%  Similarity=0.148  Sum_probs=106.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCC--CccEeEEEEec---CCCEEEEEE------CCCcEEEEECCCCceeEEe
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNP---QGHYFASSS------HDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp---~g~~l~s~s------~dg~v~lwd~~~~~~~~~~  501 (670)
                      +..|++++.|+.|..+|..+++.+-.+...  ......+..+|   ++. +++++      .+|.|+.||..+++.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            567888899999999999999988776642  11111111222   444 44443      3789999999999988776


Q ss_pred             cccC-------------------------------CCeeEEEEcCCCCEEEEEEcCCc-------------------EEE
Q 005913          502 AGHL-------------------------------SDVDCVRWHINCNYIATGSSDKT-------------------VRL  531 (670)
Q Consensus       502 ~~~~-------------------------------~~v~~v~~~p~~~~l~tgs~dg~-------------------I~i  531 (670)
                      ....                               .....+++.|+.+.+++++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            4210                               11135788899999999887764                   999


Q ss_pred             EECCCCcEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCeEEEEeCCCCeeeEE
Q 005913          532 WDVSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTP  584 (670)
Q Consensus       532 wd~~~~~~~~~~~~--h~-------~~I~~l~~sp~g~---~l~sg~~dg~I~iwDl~~~~~~~~  584 (670)
                      ||..+|+.+..+..  |.       .++.......+|+   .++.++.+|.++++|..+|+.+..
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence            99999999988764  21       1222223333665   788999999999999999998743

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.87  E-value=4.7e-07  Score=90.32  Aligned_cols=194  Identities=7%  Similarity=-0.024  Sum_probs=139.2

Q ss_pred             CEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCc-cEeEEEEecCCCEEEEE-ECCCcEEEEECCCCcee
Q 005913          423 PVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPL  498 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~-s~dg~v~lwd~~~~~~~  498 (670)
                      ....+.|++++.+.++.+.  ++.|+++|+.+++.+..+.-... ....+++.  +..++.+ -.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3689999998654444443  57999999999998887653221 22345554  4455444 46789999999999988


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                      ..+......  ...++++|+.++++..++.|.++|..+.+.+..+....     ..+..+.|. +|...+....++.|.+
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence            888633112  23355688878777778999999999998887765322     136678888 7765555556889999


Q ss_pred             EeCCCCeeeEEeeCC-------------CcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCC
Q 005913          574 WDLASGRCVTPLMGH-------------TSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       574 wDl~~~~~~~~~~~h-------------~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .|..+++.+..+...             ......++|+|+++ +++++...+.|.+.++...
T Consensus       177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999999998887632             13568999999876 5556667788988887654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.86  E-value=9.7e-08  Score=100.47  Aligned_cols=210  Identities=11%  Similarity=-0.053  Sum_probs=130.9

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC-----
Q 005913          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-----  420 (670)
Q Consensus       356 ~l~fs~d~~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----  420 (670)
                      .+.||||+++++++.          .++.|.+||+.+.....                            .+..+     
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~----------------------------~I~v~~~~~~  120 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA----------------------------DIELPDAPRF  120 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE----------------------------EEEETTSCSC
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE----------------------------EEECCCcccc
Confidence            799999999999886          36889999988643222                            11111     


Q ss_pred             --ccCEEEEEEcCCCCEEEEEeC--CCeEEE--EeCCCCceeEEeeCCCc------------------cEeEEE------
Q 005913          421 --SGPVYSASFSPLGDFILSSSA--DTTIRL--WSTKLNANLVCYKGHNY------------------PVWDVQ------  470 (670)
Q Consensus       421 --~~~V~~l~~sp~~~~L~s~s~--Dg~I~l--wd~~~~~~~~~~~~h~~------------------~V~~l~------  470 (670)
                        ......++++|||++++++..  +..|.+  +|+.+   +..+.....                  .+..+.      
T Consensus       121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence              012346789999998888764  356888  88765   222211000                  000000      


Q ss_pred             --------------------EecCCCEEEEEECCCcEEEEECCCCc--eeEEecc----------cCCCeeEEEEcCCCC
Q 005913          471 --------------------FNPQGHYFASSSHDRTARIWSMDRIQ--PLRIMAG----------HLSDVDCVRWHINCN  518 (670)
Q Consensus       471 --------------------~sp~g~~l~s~s~dg~v~lwd~~~~~--~~~~~~~----------~~~~v~~v~~~p~~~  518 (670)
                                          .++++..++..+. +.+.+.|+....  .+..+..          .......++++|+++
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~  276 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD  276 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred             cCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence                                0233333333334 566666664322  1111110          011122378999999


Q ss_pred             EEEEEEc-C--------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEE-CCCeEEEEeCCCCeeeEEeeC
Q 005913          519 YIATGSS-D--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD-EDGTIMMWDLASGRCVTPLMG  587 (670)
Q Consensus       519 ~l~tgs~-d--------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~-~l~sg~-~dg~I~iwDl~~~~~~~~~~~  587 (670)
                      .++++.. .        +.+.++|+.+++.+..+.... ....++|+|||+ .+++.. .++.|.++|+.+++.+.++..
T Consensus       277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            8887643 2        356699999999988776443 578999999998 556666 599999999999999999875


Q ss_pred             CCcceEEEEEcC
Q 005913          588 HTSCVWTLAYSC  599 (670)
Q Consensus       588 h~~~V~sl~~s~  599 (670)
                      ... .+.+++.+
T Consensus       356 g~~-P~~i~~~~  366 (368)
T 1mda_H          356 DKG-PESLSVQN  366 (368)
T ss_dssp             CSC-CCEEECCC
T ss_pred             CCC-CCEEEeec
Confidence            543 35666543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.83  E-value=2.7e-06  Score=89.68  Aligned_cols=225  Identities=11%  Similarity=0.013  Sum_probs=146.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC
Q 005913          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA  441 (670)
Q Consensus       362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~  441 (670)
                      ++..+++++.++.|..+|..+....-.....                  .      .....++    ..  +..++.++.
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------------------~------~~~~~p~----~~--~~~v~v~~~  151 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVA------------------G------EALSRPV----VS--DGLVLIHTS  151 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECS------------------S------CCCSCCE----EE--TTEEEEECT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCC------------------C------ceEcCCE----EE--CCEEEEEcC
Confidence            4567788889999999998753221100000                  0      0011122    11  457888889


Q ss_pred             CCeEEEEeCCCCceeEEeeCCCccE-----eEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCC----eeE--
Q 005913          442 DTTIRLWSTKLNANLVCYKGHNYPV-----WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD----VDC--  510 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~~~V-----~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~----v~~--  510 (670)
                      ++.|..+|..+++.+..+.......     ......  +..+++++.++.+..+|..+++.+.........    +..  
T Consensus       152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~  229 (376)
T 3q7m_A          152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS  229 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------
T ss_pred             CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccccc
Confidence            9999999999998887766432211     112222  456788888999999999999887766532110    000  


Q ss_pred             -EEEcC--CCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC
Q 005913          511 -VRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG  587 (670)
Q Consensus       511 -v~~~p--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~  587 (670)
                       +...|  .+..+++++.++.+..+|..+|+.+.....  .....+..  ++..++.++.+|.|..+|..+++.+.....
T Consensus       230 ~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~  305 (376)
T 3q7m_A          230 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD  305 (376)
T ss_dssp             CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred             ccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence             00111  356788888899999999999998866542  33444444  366888888999999999999998766652


Q ss_pred             C-CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          588 H-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       588 h-~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      . ...+.+...  .+..|+.++.+|.|.++|..+++..
T Consensus       306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence            2 222233333  2567888999999999999887654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.80  E-value=2.1e-06  Score=90.51  Aligned_cols=187  Identities=9%  Similarity=-0.001  Sum_probs=128.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe---
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV---  508 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v---  508 (670)
                      ++..+++++.++.|..+|..+++.+..+.............  +..+++++.++.|..+|..+++.+..........   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            36678888899999999999998877666543222222222  4578888899999999999998887765432211   


Q ss_pred             --eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCC-------eEEEEEcC--CCCEEEEEECCCeEEEEeCC
Q 005913          509 --DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-------ILSLAMSP--DGRYMASGDEDGTIMMWDLA  577 (670)
Q Consensus       509 --~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-------I~~l~~sp--~g~~l~sg~~dg~I~iwDl~  577 (670)
                        ......  +..+++++.++.|..+|..+|+.+.........       +..+..+|  .+..++.++.+|.+..+|..
T Consensus       180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred             CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence              122222  457888888999999999999988776532110       00011112  35678888889999999999


Q ss_pred             CCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccc
Q 005913          578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (670)
Q Consensus       578 ~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~  626 (670)
                      +|+.+.....  .....+..  ++..|+.++.+|.|..+|..++.....
T Consensus       258 tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~  302 (376)
T 3q7m_A          258 SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT  302 (376)
T ss_dssp             TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe
Confidence            9988766542  23444444  366788888999999999988876543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.79  E-value=9e-06  Score=83.20  Aligned_cols=227  Identities=8%  Similarity=0.037  Sum_probs=141.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ......++|+++++++++-..++.|..|+....                             ... .....+.+.++++.
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----------------------------~~~-~~~~~~~p~gia~~   80 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------------------QQI-HATVEGKVSGLAFT   80 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------------------EEE-EEECSSEEEEEEEC
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----------------------------eEE-EEeCCCCceeEEEc
Confidence            356789999999998777778899988886531                             001 11122458899999


Q ss_pred             CCCCEEEEEeCC-C-eEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEec----
Q 005913          431 PLGDFILSSSAD-T-TIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMA----  502 (670)
Q Consensus       431 p~~~~L~s~s~D-g-~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~-~~~~~----  502 (670)
                      ++++++++.... + .|..++..+++....... .......++..+.+..+++...++.|..+|...+.. +....    
T Consensus        81 ~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~  160 (306)
T 2p4o_A           81 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA  160 (306)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred             CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence            999966655432 2 466677776664433221 122234445455554455444688899998875421 21111    


Q ss_pred             -----ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC-CcE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          503 -----GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       503 -----~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~--~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                           ......+.+  +|++++|+++. ..+.|..||+.. +..  ...+.. ......++++++|+++++....+.|.+
T Consensus       161 ~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~  237 (306)
T 2p4o_A          161 RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVR  237 (306)
T ss_dssp             CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred             cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEE
Confidence                 112234555  78887666554 567899999874 321  222221 134567899999988777777889999


Q ss_pred             EeCCCCeee--EEeeCCCcceEEEEEc---CCCCEEEEEECCC
Q 005913          574 WDLASGRCV--TPLMGHTSCVWTLAYS---CEGSLLASGSADC  611 (670)
Q Consensus       574 wDl~~~~~~--~~~~~h~~~V~sl~~s---~~g~~l~sgs~Dg  611 (670)
                      +|.. ++..  ..+.......++++|.   |+++.|+.++..+
T Consensus       238 ~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          238 IAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            9975 6542  2333333568999998   8877777666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.74  E-value=3.4e-05  Score=89.99  Aligned_cols=276  Identities=10%  Similarity=0.072  Sum_probs=172.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ...|.++...+++.+.+ |+.++-|.+|+..+.........                ....     ..-....|.++...
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~----------------~~~~-----~~l~~~~i~~i~~d  271 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHS----------------PSNP-----KSISSNYIRSLAMD  271 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCC----------------TTCT-----TSCSCSBEEEEEEC
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecC----------------CCCc-----cccCCCeEEEEEEc
Confidence            45688888888776554 55444488888654211100000                0000     00123579999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-------CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      ++|.+.+ |+.+| |.+|+..++........       ....|.++...++|. +..|+.++-|..|+..+.... .+..
T Consensus       272 ~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~  347 (795)
T 4a2l_A          272 SQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRN  347 (795)
T ss_dssp             TTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECC
T ss_pred             CCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcC
Confidence            8887554 44454 89999876654332211       235699999998886 566777788999987654322 2221


Q ss_pred             -------cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec--------CCCCeEEEEEcCCCCEEEEEECC
Q 005913          504 -------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------HRSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       504 -------~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--------h~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                             ....|.++...++|+ |.+|+.++-|..||..++........        ....|.+++..++|+.|..|+.+
T Consensus       348 ~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~  426 (795)
T 4a2l_A          348 IPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA  426 (795)
T ss_dssp             CTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc
Confidence                   234689999888876 55577787899999887765443211        23569999999999867778887


Q ss_pred             CeEEEEeCCCCeeeEEee----CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          569 GTIMMWDLASGRCVTPLM----GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~----~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                      +-|.+||..+++......    .+...|.++...++|++.+.. . +.|.+|+..++...... . .  .     ..-.-
T Consensus       427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~-~-~--~-----~~~~~  495 (795)
T 4a2l_A          427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIE-K-E--K-----DGTPV  495 (795)
T ss_dssp             TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECC-B-C--T-----TCCBC
T ss_pred             CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEcc-c-c--c-----ccccc
Confidence            789999988876433221    134579999999888866554 4 45888987664321000 0 0  0     00011


Q ss_pred             CCCCeEEEEEecCCcEEEEe
Q 005913          645 KSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       645 ~~~~V~~l~fs~~~~~La~g  664 (670)
                      ....|.++...++|.+.++.
T Consensus       496 ~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          496 VSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             CCCCEEEEEECTTCCEEEEE
T ss_pred             CCceEEEEEECCCCCEEEEe
Confidence            23568899998888766544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.72  E-value=4.3e-07  Score=99.62  Aligned_cols=232  Identities=11%  Similarity=0.028  Sum_probs=159.5

Q ss_pred             CCCCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE-c-CCCCEEE
Q 005913          361 QDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S-PLGDFIL  437 (670)
Q Consensus       361 ~d~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s-p~~~~L~  437 (670)
                      +||++|.+... ++.|.+.|+.+......                         + .+ ........+++ + |++.+++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~i-------------------------i-~i-p~g~~phg~~~~~~p~~~~v~  151 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAI-------------------------L-EI-PNAKGIHGLRPQKWPRSNYVF  151 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEE-------------------------E-EC-SSCCSEEEEEECCSSBCSEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeE-------------------------E-eC-CCCCCCcceeeeecCCCcEEE
Confidence            48888887765 45699999886332110                         0 11 12234678887 4 8999988


Q ss_pred             EEe------------------CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC--------------
Q 005913          438 SSS------------------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--------------  485 (670)
Q Consensus       438 s~s------------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg--------------  485 (670)
                      +++                  .++.+.++|..+.+....+.-.. .-..++++|+|.++++.+.+.              
T Consensus       152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~  230 (595)
T 1fwx_A          152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  230 (595)
T ss_dssp             EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence            885                  24579999999988877766433 345688999999998888543              


Q ss_pred             ------------------------cEEEEECCC--Cce-eEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCC
Q 005913          486 ------------------------TARIWSMDR--IQP-LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG  537 (670)
Q Consensus       486 ------------------------~v~lwd~~~--~~~-~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~  537 (670)
                                              .|.+.|..+  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.
T Consensus       231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence                                    467777776  444 444442 24567899999999888766 5789999999865


Q ss_pred             c------------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC----------CeeeEEeeCCCcce---
Q 005913          538 E------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHTSCV---  592 (670)
Q Consensus       538 ~------------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~----------~~~~~~~~~h~~~V---  592 (670)
                      +            .+.... -......++|+|+|...++...|+.|.+||+.+          ...+..+..|-.+-   
T Consensus       310 ~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~  388 (595)
T 1fwx_A          310 DAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK  388 (595)
T ss_dssp             HHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred             ccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence            3            233332 234578899999995555677899999999977          55677776665432   


Q ss_pred             --EEEEEcCCCCEEEEEEC---CCc----------EEEEeCCCCc
Q 005913          593 --WTLAYSCEGSLLASGSA---DCT----------VKLWDVTTST  622 (670)
Q Consensus       593 --~sl~~s~~g~~l~sgs~---Dg~----------I~iwd~~~~~  622 (670)
                        ..+.++|||++|+++..   |+.          -.++|+..++
T Consensus       389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence              12345899999998863   332          1789995443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.72  E-value=5.5e-07  Score=102.77  Aligned_cols=272  Identities=11%  Similarity=0.032  Sum_probs=156.7

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ecCcc
Q 005913          356 CASISQ-DGSLVAGGFSDS-----------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QGHSG  422 (670)
Q Consensus       356 ~l~fs~-d~~~La~g~~dg-----------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~  422 (670)
                      ++++.+ ++++++.|+.+.           .+.+||..+...                          ...... ..+..
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w--------------------------~~~~~~~~~~~~  243 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV--------------------------SDRTVTVTKHDM  243 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB--------------------------CCCEEEECSCCC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE--------------------------EeCcccCCCCCC
Confidence            556667 888999887543           477787664211                          111111 12333


Q ss_pred             CEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEeeCCCc-cEeEEEEecCCCEEEEEE-CC-----CcEEEEECCC
Q 005913          423 PVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSS-HD-----RTARIWSMDR  494 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s-~d-----g~v~lwd~~~  494 (670)
                      ...++++..++.+++.|+. ++.+.+||..+.+....-..+.. .-.+++..++|+.++.|+ .+     ..+.+||..+
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            3445678889999998884 56899999887654332221111 112455667899999998 44     5789999987


Q ss_pred             CceeEEe----cccCCCeeEEEEcCCCCEEEEEEcCC---------cEEEEECCCCcEEEEEecCCC---------CeEE
Q 005913          495 IQPLRIM----AGHLSDVDCVRWHINCNYIATGSSDK---------TVRLWDVSSGECVRIFIGHRS---------MILS  552 (670)
Q Consensus       495 ~~~~~~~----~~~~~~v~~v~~~p~~~~l~tgs~dg---------~I~iwd~~~~~~~~~~~~h~~---------~I~~  552 (670)
                      .+-...-    ......-....+..++..++.|+.+|         .+..||..+.........+..         .-.+
T Consensus       324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~a  403 (656)
T 1k3i_A          324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  403 (656)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCce
Confidence            6533320    00000000011224555555665443         567888887765433322211         2344


Q ss_pred             EEEcC-CCCEEEEEECCC-----------eEEEEeCCCCeeeEEe--eCCCcce-EEEEEcCCCCEEEEEECC-------
Q 005913          553 LAMSP-DGRYMASGDEDG-----------TIMMWDLASGRCVTPL--MGHTSCV-WTLAYSCEGSLLASGSAD-------  610 (670)
Q Consensus       553 l~~sp-~g~~l~sg~~dg-----------~I~iwDl~~~~~~~~~--~~h~~~V-~sl~~s~~g~~l~sgs~D-------  610 (670)
                      +.|.. ++++++.|+.++           .|.+||..+..-....  ..+.... .+++..|++++++.|+.+       
T Consensus       404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            55543 677888887543           6888998776543322  1122222 345667899999999865       


Q ss_pred             ----CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          611 ----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       611 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                          ..+.+||..+..             +..+...+.......+..+.++|+++++|+.
T Consensus       484 ~~~~~~v~~ydp~t~~-------------W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          484 STPVFTPEIYVPEQDT-------------FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSBCCCCEEEEGGGTE-------------EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEcCCCCc-------------eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                467888875532             2223333333333445566799999999985

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.71  E-value=3.2e-06  Score=83.36  Aligned_cols=186  Identities=14%  Similarity=0.100  Sum_probs=132.1

Q ss_pred             cCcc--CEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCCcEEEEECC
Q 005913          419 GHSG--PVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMD  493 (670)
Q Consensus       419 ~h~~--~V~~l~~sp~~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~  493 (670)
                      .|..  -...+.|+ ++.+..+++.+|  .|+.+|+.+++.+....... ........+++..+.... .++.+.+||..
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            4543  35789998 666666777766  89999999999888776543 233333333455555544 58899999999


Q ss_pred             CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECC
Q 005913          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~d  568 (670)
                      +.+.+..+....   ....+++++..|+.+..++.|.++|..+.+.+..+....     ..+..+.|. +|+..+..-.+
T Consensus       116 t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          116 NLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             TCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             cCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence            999998887432   222333577777777667889999999999888765422     234557776 77655555578


Q ss_pred             CeEEEEeCCCCeeeEEeeCC------------CcceEEEEEcCCCCEEEEEECC
Q 005913          569 GTIMMWDLASGRCVTPLMGH------------TSCVWTLAYSCEGSLLASGSAD  610 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h------------~~~V~sl~~s~~g~~l~sgs~D  610 (670)
                      +.|.+.|..+++.+..+...            ....+.++|+|+++.|+..+..
T Consensus       192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            89999999999998877532            1346889999988877777654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.68  E-value=4.4e-05  Score=89.04  Aligned_cols=269  Identities=9%  Similarity=-0.009  Sum_probs=170.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..|.++...++|. |.+|+.++-|..|+...........                 ....     ..-....|.++...+
T Consensus       310 ~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-----------------~~~~-----~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          310 RSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN-----------------IPYK-----NSLSDNVVSCIVEDK  366 (795)
T ss_dssp             SCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC-----------------CTTS-----SSCSCSSEEEEEECT
T ss_pred             CcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC-----------------CCCC-----CCCCCCeeEEEEECC
Confidence            5699999999887 4557777778888754311100000                 0000     001245699999988


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeC--------CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKG--------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-  502 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--------h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-  502 (670)
                      +|. |..|+.++-|..|+..++........        ....|.++...++|..+.+|+.++-|.+||..+++...... 
T Consensus       367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~  445 (795)
T 4a2l_A          367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR  445 (795)
T ss_dssp             TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred             CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence            877 44567776799999886654332211        23568999998888857778887889999988765443322 


Q ss_pred             ---ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec------CCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          503 ---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       503 ---~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~------h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                         .....|.++...++|+..+. +. +-+.+||..+++.......      ....|.++...++|.+.+.. . +-|..
T Consensus       446 ~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~  521 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSV  521 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEE
T ss_pred             CCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEE
Confidence               13457899998888875554 44 4588999887765432211      23578999999998866544 4 45888


Q ss_pred             EeCCCCeeeEEee-------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCC
Q 005913          574 WDLASGRCVTPLM-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS  646 (670)
Q Consensus       574 wDl~~~~~~~~~~-------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (670)
                      ||..++..  .+.       .+...|.++..+++|.+.++.. . -|..||..+.... ....         ...+  ..
T Consensus       522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~---------~~gl--~~  585 (795)
T 4a2l_A          522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK-RYNT---------TNGL--PN  585 (795)
T ss_dssp             EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE-EECG---------GGTC--SC
T ss_pred             EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE-EeCC---------CCCC--ch
Confidence            99877765  222       1235689999999988665443 4 5788887654211 0000         0011  12


Q ss_pred             CCeEEEEEecCCcEEEEe
Q 005913          647 TPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       647 ~~V~~l~fs~~~~~La~g  664 (670)
                      ..|.++...++|.+.+++
T Consensus       586 ~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          586 NVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             SCEEEEEECTTSCEEEEE
T ss_pred             hheEEEEECCCCCEEEEc
Confidence            357888888888765544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.67  E-value=5.8e-06  Score=85.20  Aligned_cols=193  Identities=12%  Similarity=0.030  Sum_probs=126.4

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC-C-------------------CccEeEEEEec-CCCEEEE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-H-------------------NYPVWDVQFNP-QGHYFAS  480 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h-------------------~~~V~~l~~sp-~g~~l~s  480 (670)
                      ....+++|.++++++.++..++.|..|+..++... .+.. .                   ...+..+++.+ ++ .|++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEE
Confidence            34567889999987888888999999998765432 2221 0                   12467899998 55 4555


Q ss_pred             EECCCcEEEEECCCCceeEEecc-----cCCCeeEEEEcC-CCCEEEEEEc-----------------CCcEEEEECCCC
Q 005913          481 SSHDRTARIWSMDRIQPLRIMAG-----HLSDVDCVRWHI-NCNYIATGSS-----------------DKTVRLWDVSSG  537 (670)
Q Consensus       481 ~s~dg~v~lwd~~~~~~~~~~~~-----~~~~v~~v~~~p-~~~~l~tgs~-----------------dg~I~iwd~~~~  537 (670)
                      +...+.+..+|..++.. ..+..     .......+++.+ +|+..++...                 ++.|..||..++
T Consensus        97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            65556688888775432 22221     123468899999 9987766432                 367899998777


Q ss_pred             cEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCe--eeEEeeCCCcceEEEEEcCCCCEEEEEEC-----
Q 005913          538 ECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSA-----  609 (670)
Q Consensus       538 ~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~--~~~~~~~h~~~V~sl~~s~~g~~l~sgs~-----  609 (670)
                      +....... ......++++|+|+.|+.+ +..+.|.+||+....  ....+....+ ...++++++|+++++...     
T Consensus       176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            65433222 2335679999999976665 556899999987421  1111111223 788999999997777654     


Q ss_pred             -----CCcEEEEeCC
Q 005913          610 -----DCTVKLWDVT  619 (670)
Q Consensus       610 -----Dg~I~iwd~~  619 (670)
                           .+.|..+|-.
T Consensus       254 ~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          254 MHGRVDPKGIKFDEF  268 (322)
T ss_dssp             TTSCEEEEEEEECTT
T ss_pred             ccCCCccEEEEECCC
Confidence                 4567777753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.64  E-value=1.1e-05  Score=80.46  Aligned_cols=194  Identities=7%  Similarity=0.010  Sum_probs=131.7

Q ss_pred             EEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          354 LNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ...+.|++|+.+.++.+.  ++.|+++|+.+.......                          .+..+ ...-.+++. 
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i--------------------------~l~~~-~fgeGi~~~-   74 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH--------------------------KMDDS-YFGEGLTLL-   74 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE--------------------------ECCTT-CCEEEEEEE-
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE--------------------------ecCCC-cceEEEEEe-
Confidence            678999998754444433  688999998763321110                          01111 122245555 


Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC-----
Q 005913          432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-----  505 (670)
Q Consensus       432 ~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~-----  505 (670)
                       ++.|. +.-.++.+.++|..+.+.+..+......-+.  ++++|..++++..++.|.++|..+.+.+..+.-..     
T Consensus        75 -g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           75 -NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             -TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             -CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence             44554 4456889999999999888887643122233  55677777777778999999999988887776321     


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-------------CCCeEEEEEcCCCCE-EEEEECCCeE
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRY-MASGDEDGTI  571 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-------------~~~I~~l~~sp~g~~-l~sg~~dg~I  571 (670)
                      ..++.+.|. ++...+....++.|.+.|..+++.+..+...             ......|+|+|+++. ++++...+.+
T Consensus       152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            246778887 6754444446789999999999998887532             135689999999865 5556678889


Q ss_pred             EEEeCCCC
Q 005913          572 MMWDLASG  579 (670)
Q Consensus       572 ~iwDl~~~  579 (670)
                      .+.++...
T Consensus       231 ~~i~l~~~  238 (266)
T 2iwa_A          231 FEIKLHLV  238 (266)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecc
Confidence            88887653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.61  E-value=1.4e-05  Score=78.17  Aligned_cols=186  Identities=12%  Similarity=0.032  Sum_probs=130.0

Q ss_pred             cCc--cCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeEEeeCCCccE-eEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          419 GHS--GPVYSASFSPLGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPV-WDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       419 ~h~--~~V~~l~~sp~~~~L~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V-~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      .|.  .-...+.|++ +.+..+++.+  +.|+.+|+.+++.+.......... -.++.. .++.+...-.++.+.+||..
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence            454  4567999986 5555566664  489999999999888776433221 233443 23344444578999999999


Q ss_pred             CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECC
Q 005913          494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       494 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~d  568 (670)
                      +.+.+..+.... .-..++  +++..|+.+..++.|.++|..+.+.++.+....     ..+..+.+. +|+..+..-.+
T Consensus        94 tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           94 TLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             TTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred             cCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence            999999887433 223444  567777777778899999999999888776432     235566665 66655555568


Q ss_pred             CeEEEEeCCCCeeeEEeeCC------------C-cceEEEEEcCCCCEEEEEECC
Q 005913          569 GTIMMWDLASGRCVTPLMGH------------T-SCVWTLAYSCEGSLLASGSAD  610 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h------------~-~~V~sl~~s~~g~~l~sgs~D  610 (670)
                      ..|.+.|..+|+.+..+...            . ...+.++|+|+++.|+..+.-
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            89999999999998877521            1 356789999987766666643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.60  E-value=0.00045  Score=71.28  Aligned_cols=268  Identities=13%  Similarity=0.063  Sum_probs=149.3

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee-eecCccCEEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSA  427 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l  427 (670)
                      .....+.++.|.+++..+|+| ..|.| ++..+....-.                         .... .......+.++
T Consensus        33 ~~~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~-------------------------~~~~~~~~~~~~~~~i   85 (327)
T 2xbg_A           33 PTTATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWE-------------------------PRTLVLDHSDYRFNSV   85 (327)
T ss_dssp             SCSSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCE-------------------------ECCCCCSCCCCEEEEE
T ss_pred             CCCCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCe-------------------------ECCCCCCCCCccEEEE
Confidence            345579999999888888866 56654 23322211000                         0000 01123468888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee---CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE-Eecc
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAG  503 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~-~~~~  503 (670)
                      .|.+ +..++ ++.++.|.. ..+.++.-....   .+...+..+.+.+++..++++ .++.|.. ..+.++.-. ...+
T Consensus        86 ~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~  160 (327)
T 2xbg_A           86 SFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQE  160 (327)
T ss_dssp             EEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECS
T ss_pred             EecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecC
Confidence            9986 44444 455665544 333333322222   133457788887777666655 4554422 233343322 2234


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEEC--CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~--~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      ....+..+++.+++.+++++...+..+-+|-  .+.+.+  -......+..+++++++..+ .++.+|.+++.+...++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t  237 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN  237 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe
Confidence            5567889999999888877754444444442  233333  23445678999999998765 455678888775333433


Q ss_pred             eEEee-C---CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913          582 VTPLM-G---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  657 (670)
Q Consensus       582 ~~~~~-~---h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~  657 (670)
                      -..+. .   +...+.++.+.+++.+++++. +|.| .+..+.+.            .+..+.........++++.|.++
T Consensus       238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~------------tW~~~~~~~~~~~~~~~v~~~~~  303 (327)
T 2xbg_A          238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ------------TWQQDVDVKKVPSNFYKILFFSP  303 (327)
T ss_dssp             ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS------------SCEECGGGTTSSSCCCEEEEEET
T ss_pred             eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc------------ccEEcCccCCCCCCeEEEEEECC
Confidence            22222 1   224588999998877666654 6766 34444332            12222221122356888999877


Q ss_pred             CcEEEEee
Q 005913          658 NLLFAAGA  665 (670)
Q Consensus       658 ~~~La~gs  665 (670)
                      +.++++|.
T Consensus       304 ~~~~~~G~  311 (327)
T 2xbg_A          304 DQGFILGQ  311 (327)
T ss_dssp             TEEEEECS
T ss_pred             CceEEEcC
Confidence            77666654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.59  E-value=2.7e-05  Score=79.56  Aligned_cols=227  Identities=10%  Similarity=0.032  Sum_probs=139.8

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR  499 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~  499 (670)
                      ....+++|+++++++++...++.|..||.... ....+. .......+++.++|+.+++.....  .|..++..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            56788999999997777778899999998753 333333 234688999999998666554332  46677777766543


Q ss_pred             Eecc-cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-EEEEec---------CCCCeEEEEEcCCCCEEEEE-EC
Q 005913          500 IMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIG---------HRSMILSLAMSPDGRYMASG-DE  567 (670)
Q Consensus       500 ~~~~-~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-~~~~~~---------h~~~I~~l~~sp~g~~l~sg-~~  567 (670)
                      .... .......++..+.+..+++...++.|+.+|..+++. +....+         .-.....+  +|+++.|+.+ ..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            3221 122334555555555455544588999999876532 211111         11234455  8888766655 45


Q ss_pred             CCeEEEEeCCC-Cee--eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          568 DGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       568 dg~I~iwDl~~-~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                      .+.|..||+.. +..  ...+.. ......++++++|+++++....+.|.+++.. +...             .+.....
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~-------------~~~~~~~  252 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT-------------IIAQAEQ  252 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE-------------EEECGGG
T ss_pred             CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE-------------EEeeccc
Confidence            68999999874 321  111111 1235678999999988887778899999864 2210             0111222


Q ss_pred             CCCCeEEEEEe---cCCcEEEEeeCC
Q 005913          645 KSTPVYSLQFS---RRNLLFAAGALS  667 (670)
Q Consensus       645 ~~~~V~~l~fs---~~~~~La~gs~d  667 (670)
                      ......+++|.   +++..|.+++..
T Consensus       253 ~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ccCCceEEEEecccCCCCEEEEECCC
Confidence            23457899998   786655555443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.58  E-value=6.5e-06  Score=93.94  Aligned_cols=185  Identities=9%  Similarity=0.057  Sum_probs=128.4

Q ss_pred             CCeEEEEeCCCCceeEEeeCCC-------------------------------ccEeEEEEecCCCEEEEEECCC-----
Q 005913          442 DTTIRLWSTKLNANLVCYKGHN-------------------------------YPVWDVQFNPQGHYFASSSHDR-----  485 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-------------------------------~~V~~l~~sp~g~~l~s~s~dg-----  485 (670)
                      +|.|+.+|..+++.+-.+....                               .....+++.|.+..++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5899999999999887765310                               0012467888888888887766     


Q ss_pred             --------------cEEEEECCCCceeEEecc--cC-------CCeeEEEEcCCCC---EEEEEEcCCcEEEEECCCCcE
Q 005913          486 --------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC  539 (670)
Q Consensus       486 --------------~v~lwd~~~~~~~~~~~~--~~-------~~v~~v~~~p~~~---~l~tgs~dg~I~iwd~~~~~~  539 (670)
                                    .|..+|.++++.+..+..  |.       .+.....+..+|+   .+++++.+|.++++|..+|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          399999999998887763  22       2223333334665   688899999999999999998


Q ss_pred             EEEEecCC------------CCe------------------------EEEEEcCCCCEEEEEE-----------------
Q 005913          540 VRIFIGHR------------SMI------------------------LSLAMSPDGRYMASGD-----------------  566 (670)
Q Consensus       540 ~~~~~~h~------------~~I------------------------~~l~~sp~g~~l~sg~-----------------  566 (670)
                      +.......            .++                        ..++++|+...++...                 
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            84432211            000                        1267888766665421                 


Q ss_pred             -------------------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          567 -------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       567 -------------------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                                         .+|.|..||+.+++.+-+...+. ++....+...+.+++.++.||.|++||..+++.....
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence                               23889999999999887665332 2333344456788999999999999999998765433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.57  E-value=9.3e-06  Score=80.09  Aligned_cols=201  Identities=11%  Similarity=0.086  Sum_probs=132.1

Q ss_pred             eeEEeeCCCc--cEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcE
Q 005913          455 NLVCYKGHNY--PVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTV  529 (670)
Q Consensus       455 ~~~~~~~h~~--~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I  529 (670)
                      .+..+. |..  -...+.|+ ++..+.+++.+|  .|+.+|+.+++.+..+... .........+.++.|...+ .++.+
T Consensus        33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence            344553 432  24788898 677777777766  9999999999998887643 2333322233455555544 58899


Q ss_pred             EEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC--C---cceEEEEEcCCCCEE
Q 005913          530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--T---SCVWTLAYSCEGSLL  604 (670)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h--~---~~V~sl~~s~~g~~l  604 (670)
                      .+||..+.+.+..+....   ....++++++.|+.+..++.|.++|..+.+.+.++...  .   ..+..+.|. +|.++
T Consensus       110 ~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly  185 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF  185 (262)
T ss_dssp             EEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence            999999999999887533   22344467887777777889999999999888877642  2   234557776 77766


Q ss_pred             EEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          605 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       605 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      +..-.++.|.+.|..++..............   .........-.+.++|+|++..|.+.+
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~---~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAE---AGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGG---SCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccc---cccccCcCCceEEEEEcCCCCEEEEEC
Confidence            6665788999999999876544432110000   000112234578999999765554444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.57  E-value=1.1e-05  Score=79.44  Aligned_cols=180  Identities=12%  Similarity=0.029  Sum_probs=128.1

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEe--EEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW--DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~--~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      .-...+.|+ ++.+..+++.+|.|+.+|+.+++.+..+ -.. ...  .+++.. +..++..-.++.+.+||..+.+.+.
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence            345788898 3566677888899999999999988776 222 233  344432 2334444468899999999999998


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~sg~~dg~I~iw  574 (670)
                      .+.... .-..++  +++..|+.+..++.|+++|..+.+.+..+....     ..+..+.|. +|+..+..-.++.|.+.
T Consensus       131 ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          131 TTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             EEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            887432 223343  578888888778999999999999888775422     234667777 77655555568899999


Q ss_pred             eCCCCeeeEEeeCC-------------CcceEEEEEcCCCCEEEEEEC
Q 005913          575 DLASGRCVTPLMGH-------------TSCVWTLAYSCEGSLLASGSA  609 (670)
Q Consensus       575 Dl~~~~~~~~~~~h-------------~~~V~sl~~s~~g~~l~sgs~  609 (670)
                      |..+++.+..+...             ....+.|+|+|+++.|+..+.
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            99999988877521             135688999997665555543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.56  E-value=0.00011  Score=76.73  Aligned_cols=201  Identities=10%  Similarity=-0.024  Sum_probs=132.5

Q ss_pred             ccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCC-CEEEEEECCCcEEEEECCCCcee
Q 005913          421 SGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      ...+.+++|++.+..|. +-...+.|+.+++..................+++.+.+ ..+++-...+.|.+.+++.....
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            34578999998666655 44567889999998665444443333345688998754 44555556789999999866544


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEE-cC-CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGS-SD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD  575 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs-~d-g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwD  575 (670)
                      ..+.........++++|.+..|+... .. +.|..+++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            44545556789999999666555544 34 7888888764433322222334578999998777666654 567899999


Q ss_pred             CCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       576 l~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      +........+.........+++ .++.++++-...+.|..++..++.
T Consensus       232 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          232 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence            8754333333333445677888 356666666677888888855544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.53  E-value=2.1e-05  Score=87.95  Aligned_cols=193  Identities=13%  Similarity=0.074  Sum_probs=128.2

Q ss_pred             CEEEEEeC------CCeEEEEeCCCCceeEEeeCCCcc-------------------------------------E-eEE
Q 005913          434 DFILSSSA------DTTIRLWSTKLNANLVCYKGHNYP-------------------------------------V-WDV  469 (670)
Q Consensus       434 ~~L~s~s~------Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V-~~l  469 (670)
                      ..+++++.      ++.|+.+|..+++.+-.+......                                     + ..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            45555554      789999999999988766542211                                     1 135


Q ss_pred             EEecCCCEEEEEECC----------------CcEEEEECCCCceeEEeccc--C-------CCeeEEEEcCCCC---EEE
Q 005913          470 QFNPQGHYFASSSHD----------------RTARIWSMDRIQPLRIMAGH--L-------SDVDCVRWHINCN---YIA  521 (670)
Q Consensus       470 ~~sp~g~~l~s~s~d----------------g~v~lwd~~~~~~~~~~~~~--~-------~~v~~v~~~p~~~---~l~  521 (670)
                      ++.+....++.++.+                +.|..+|.++++.+..+...  .       ....-+...++|+   .++
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~  320 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS  320 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence            666765666666532                35999999999988776532  1       1111122234674   577


Q ss_pred             EEEcCCcEEEEECCCCcEEEEEecCC-------------CCe--------------------------EEEEEcCCCCEE
Q 005913          522 TGSSDKTVRLWDVSSGECVRIFIGHR-------------SMI--------------------------LSLAMSPDGRYM  562 (670)
Q Consensus       522 tgs~dg~I~iwd~~~~~~~~~~~~h~-------------~~I--------------------------~~l~~sp~g~~l  562 (670)
                      .++.+|.++++|..+|+.+..+....             .++                          ..++++|+...+
T Consensus       321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~  400 (571)
T 2ad6_A          321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL  400 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred             EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEE
Confidence            88899999999999999887654221             111                          235788887777


Q ss_pred             EEEE-------------------------------------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEE
Q 005913          563 ASGD-------------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA  605 (670)
Q Consensus       563 ~sg~-------------------------------------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~  605 (670)
                      ++..                                     .+|.|..||+.+++.+-++... ..+.+..+...+..++
T Consensus       401 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~  479 (571)
T 2ad6_A          401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVW  479 (571)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEE
T ss_pred             EEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEE
Confidence            6653                                     3578999999999988766532 2222222333466788


Q ss_pred             EEECCCcEEEEeCCCCcccccc
Q 005913          606 SGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       606 sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      .++.||.|++||..+++.....
T Consensus       480 ~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          480 YATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEE
T ss_pred             EEcCCCeEEEEECCCCCEEEEE
Confidence            8999999999999998765433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.52  E-value=0.00013  Score=77.20  Aligned_cols=202  Identities=10%  Similarity=-0.029  Sum_probs=133.9

Q ss_pred             ccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCCCcee
Q 005913          421 SGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      ...+.+++|++.+..|+ +-...+.|+.+++........+.........+++.+.+. .+++-...+.|.+.+++.....
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            35678999998666555 545678899999986654444433333456789987544 4455556778999888765544


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEc-C-CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSS-D-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD  575 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~-d-g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwD  575 (670)
                      ..+.........++++|.+..|+.... . +.|..+++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            455555567899999987776665543 3 6788888765443333333344578999998766666554 567899999


Q ss_pred             CCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       576 l~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +........+.........+++ .++.++++-...+.|..++..++..
T Consensus       275 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          275 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence            8654433333333445678888 4556667766778898888555543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.50  E-value=1.5e-05  Score=90.99  Aligned_cols=152  Identities=11%  Similarity=0.137  Sum_probs=106.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCC----ccEeEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEec
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~~  502 (670)
                      +..++.++.|+.|..+|..+++.+-.+....    ..+.+.-.-.++ .+++++.      +|.|+.+|..+++.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            5678888899999999999999887766421    111110001134 4555543      5899999999999887764


Q ss_pred             ccC-------------------------------CCeeEEEEcCCCCEEEEEEcCC-------------------cEEEE
Q 005913          503 GHL-------------------------------SDVDCVRWHINCNYIATGSSDK-------------------TVRLW  532 (670)
Q Consensus       503 ~~~-------------------------------~~v~~v~~~p~~~~l~tgs~dg-------------------~I~iw  532 (670)
                      ...                               .....+++.|....+++++.++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            210                               0112468888888998888776                   39999


Q ss_pred             ECCCCcEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          533 DVSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       533 d~~~~~~~~~~~~--h~-------~~I~~l~~sp~g~---~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      |..+|+.+..+..  |.       .+.....+..+|+   .++.++.+|.++++|..+|+.+...
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence            9999999988764  22       2333333344675   6889999999999999999988443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.49  E-value=8.7e-05  Score=73.43  Aligned_cols=199  Identities=9%  Similarity=0.073  Sum_probs=133.3

Q ss_pred             eeecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          416 LYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       416 ~~~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      .+.+-...+.+++|+|++..|+ +...++.|...|.. ++.+..+.- .....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3445567899999999877555 56778899999998 777666542 22457789999988877776677889999876


Q ss_pred             CCce---eEEec------ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC---CCcEEEEEe-------cCCCCeEEEE
Q 005913          494 RIQP---LRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFI-------GHRSMILSLA  554 (670)
Q Consensus       494 ~~~~---~~~~~------~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~---~~~~~~~~~-------~h~~~I~~l~  554 (670)
                      ....   +....      ........++|+|.++.|+++.......+|.+.   ....+..+.       .+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5442   22221      123456899999999888887766555555543   122223221       1233578999


Q ss_pred             EcCC-CCEEEEEECCCeEEEEeCCCCeeeEEeeCCC---------cceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          555 MSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       555 ~sp~-g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~---------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      ++|. +.+++.......|.++|.. |+.+..+.-..         ...-.|+|.++|+++++ +..+.+.++.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            9995 5566677778889999965 55655554221         24578999999985555 6666555554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.48  E-value=1.1e-05  Score=93.40  Aligned_cols=239  Identities=9%  Similarity=0.010  Sum_probs=134.5

Q ss_pred             CEEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-CccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          353 GLNCASIS-QDGSLVAGGFS-DS----SLKVWDMAKL-GQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       353 ~V~~l~fs-~d~~~La~g~~-dg----~I~Iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+...+|| |||++||.+.. +|    .|+++++.+. ...                           ...+.   ....
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---------------------------~~~~~---~~~~  224 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI---------------------------ADKVS---GTNG  224 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC---------------------------CCCEE---EECS
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC---------------------------Ccccc---Ccee
Confidence            57889999 99999986543 23    4999998752 100                           00011   1124


Q ss_pred             EEEEcCCCCEEEEEeCC-----CeEEEEeCCCCce--eEEeeC-CCccEeEEEEecCCCEEEEEEC---CCcEEEEECCC
Q 005913          426 SASFSPLGDFILSSSAD-----TTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDR  494 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~D-----g~I~lwd~~~~~~--~~~~~~-h~~~V~~l~~sp~g~~l~s~s~---dg~v~lwd~~~  494 (670)
                      +++|+|||+.|+..+.|     ..|+++++.++..  ...+.. +.....++.|+|+|++|+..+.   ...|+++|+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            57899999988877665     3688888887642  344432 2334567899999999887663   34688889887


Q ss_pred             Cc-ee--EEec-ccCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEE-EecCCC--CeEEEEEcCCCCEEE
Q 005913          495 IQ-PL--RIMA-GHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRI-FIGHRS--MILSLAMSPDGRYMA  563 (670)
Q Consensus       495 ~~-~~--~~~~-~~~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~-~~~h~~--~I~~l~~sp~g~~l~  563 (670)
                      +. ..  +.+. ........+.|+..+.+++.+..+    ..|..+|+.++..... +..+..  .+..+.+. .+.+++
T Consensus       305 ~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~  383 (751)
T 2xe4_A          305 GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVV  383 (751)
T ss_dssp             CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEE
T ss_pred             CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEE
Confidence            52 22  3333 334445566665444444444443    3677778765322222 233433  34455554 234555


Q ss_pred             EEECCCe--EEEEeC-------CCCeeeEEeeCC-CcceEEEEE----cCCCC-EEEEEECC---CcEEEEeCCCCc
Q 005913          564 SGDEDGT--IMMWDL-------ASGRCVTPLMGH-TSCVWTLAY----SCEGS-LLASGSAD---CTVKLWDVTTST  622 (670)
Q Consensus       564 sg~~dg~--I~iwDl-------~~~~~~~~~~~h-~~~V~sl~~----s~~g~-~l~sgs~D---g~I~iwd~~~~~  622 (670)
                      +...+|.  |.++|+       ..+..+..+... ...+..+.+    ++++. ++++.+..   +.+..+|+.++.
T Consensus       384 ~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          384 AGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             EEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             EEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            6667775  556665       333313333211 122334433    34554 44444433   457777776554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.45  E-value=0.00076  Score=69.17  Aligned_cols=201  Identities=8%  Similarity=-0.054  Sum_probs=128.8

Q ss_pred             ccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCC----CceeEEeeCCCccEeEEEEecCCC-EEEEEECCCcEEEEECCC
Q 005913          421 SGPVYSASFSPLGDFIL-SSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDR  494 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~dg~v~lwd~~~  494 (670)
                      ...+.+++|++.+..|. +-...+.|..+++..    ......+...-.....+++.+.+. .+++-...+.|.+++++.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            45678999998766555 445568999999876    222222332223457899987544 445556778999999886


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEcC--CcEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGT  570 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d--g~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~sg~-~dg~  570 (670)
                      ......+.........++++|.+..|+.+...  +.|..+++.. .....+ ...-.....++++|++..|+.+. ..+.
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence            54444444445678899999977666655543  6888888753 333333 23334678999999877776655 5679


Q ss_pred             EEEEeCCCCeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          571 IMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      |..+|+...........  .......+++. .+.++++-...+.|..++..++..
T Consensus       188 I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence            99999874332222221  22345778885 466666666778899998765543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.43  E-value=5.8e-05  Score=84.55  Aligned_cols=186  Identities=14%  Similarity=0.081  Sum_probs=124.0

Q ss_pred             CCCeEEEEeCCCCceeEEeeCCCcc-------------------------------------Ee-EEEEecCCCEEEEEE
Q 005913          441 ADTTIRLWSTKLNANLVCYKGHNYP-------------------------------------VW-DVQFNPQGHYFASSS  482 (670)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V~-~l~~sp~g~~l~s~s  482 (670)
                      .+|.|+.+|..+++.+-.+......                                     +| ..++.+....++.++
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3799999999999988766542211                                     11 345667677777776


Q ss_pred             CC----------------CcEEEEECCCCceeEEecccCCC---------eeEEEEc-CCC---CEEEEEEcCCcEEEEE
Q 005913          483 HD----------------RTARIWSMDRIQPLRIMAGHLSD---------VDCVRWH-INC---NYIATGSSDKTVRLWD  533 (670)
Q Consensus       483 ~d----------------g~v~lwd~~~~~~~~~~~~~~~~---------v~~v~~~-p~~---~~l~tgs~dg~I~iwd  533 (670)
                      .+                +.|..+|.++++.+..+......         ..-+... .+|   ..++.++.+|.++++|
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD  339 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence            55                38999999999988777642211         1112222 567   5677788999999999


Q ss_pred             CCCCcEEEEEecCC-------------CCe--------------------------EEEEEcCCCCEEEEEE--------
Q 005913          534 VSSGECVRIFIGHR-------------SMI--------------------------LSLAMSPDGRYMASGD--------  566 (670)
Q Consensus       534 ~~~~~~~~~~~~h~-------------~~I--------------------------~~l~~sp~g~~l~sg~--------  566 (670)
                      ..+|+.+.......             .++                          ..++++|+..++++..        
T Consensus       340 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~  419 (599)
T 1w6s_A          340 RTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE  419 (599)
T ss_dssp             TTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred             CCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeee
Confidence            99999887654211             111                          2456777766655431        


Q ss_pred             -------------------------------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEE
Q 005913          567 -------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL  615 (670)
Q Consensus       567 -------------------------------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~i  615 (670)
                                                     .+|.|..||+.+++.+-+.... .++.+-.....+.+++.++.||.|+.
T Consensus       420 ~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A  498 (599)
T 1w6s_A          420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKA  498 (599)
T ss_dssp             ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             cccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEE
Confidence                                           3478999999999887665421 11221112235677888999999999


Q ss_pred             EeCCCCcccccc
Q 005913          616 WDVTTSTKVLKT  627 (670)
Q Consensus       616 wd~~~~~~~~~~  627 (670)
                      ||..+++.+.+.
T Consensus       499 ~D~~tG~~lW~~  510 (599)
T 1w6s_A          499 RDSDTGDLLWKF  510 (599)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            999998866544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=6.2e-05  Score=80.99  Aligned_cols=235  Identities=9%  Similarity=0.036  Sum_probs=139.8

Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          353 GLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       353 ~V~~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ....++|+| ++..|.++...+.|+.+++...                             .+..+.........++|++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----------------------------~v~~~~~~~~~P~~ia~d~  188 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----------------------------YVSTVYSGLSKVRTICWTH  188 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----------------------------EEEEEECCCSCEEEEEECT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----------------------------EEEEEecCCCCcceEEEeC
Confidence            357889998 4555555544478888887641                             1222233445688999999


Q ss_pred             CCCEEEEEeC-CC----eEEEEeCCCCcee--EEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEec-
Q 005913          432 LGDFILSSSA-DT----TIRLWSTKLNANL--VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA-  502 (670)
Q Consensus       432 ~~~~L~s~s~-Dg----~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-  502 (670)
                      ++++|+.+.. ++    .+..++.. +...  ..+.. ......++++| +|..+++-..++.|..++.+.+....... 
T Consensus       189 ~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~  266 (430)
T 3tc9_A          189 EADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI  266 (430)
T ss_dssp             TSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence            9996666554 22    23334432 2221  22222 22356788999 67766666677899999998765422222 


Q ss_pred             ccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCC--CcE--EEEEecC---------------CCCeE-EEEEc-----
Q 005913          503 GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGH---------------RSMIL-SLAMS-----  556 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~--~~~--~~~~~~h---------------~~~I~-~l~~s-----  556 (670)
                      +.......++|+|++++|+.+ ...+.|+.++...  +..  +..+.+.               -.... .++..     
T Consensus       267 ~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~  346 (430)
T 3tc9_A          267 QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYK  346 (430)
T ss_dssp             SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGT
T ss_pred             CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccc
Confidence            222457789999999965554 4567899987653  221  2222221               01122 45553     


Q ss_pred             ---CCCCEEEEEECCCeEEEEeCCCCeeeEEeeC----C----C---------cceEEEEEcC-CCCEEEEEECCCcEEE
Q 005913          557 ---PDGRYMASGDEDGTIMMWDLASGRCVTPLMG----H----T---------SCVWTLAYSC-EGSLLASGSADCTVKL  615 (670)
Q Consensus       557 ---p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~----h----~---------~~V~sl~~s~-~g~~l~sgs~Dg~I~i  615 (670)
                         ++|.++++-...+.|+.+| ..|......-.    .    .         .....+++++ ++.++++-..++.|+.
T Consensus       347 ~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~  425 (430)
T 3tc9_A          347 GSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK  425 (430)
T ss_dssp             TSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred             ccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence               3465666555678899998 45643322211    0    1         1478899999 4666666666778888


Q ss_pred             EeCC
Q 005913          616 WDVT  619 (670)
Q Consensus       616 wd~~  619 (670)
                      ++++
T Consensus       426 i~~e  429 (430)
T 3tc9_A          426 IGYE  429 (430)
T ss_dssp             EEEC
T ss_pred             EccC
Confidence            7753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.00029  Score=81.80  Aligned_cols=280  Identities=11%  Similarity=0.010  Sum_probs=165.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ...|.++...++|. |.+|+..+-|.+++...........        .....+....      ....-....|.++...
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~--------~~f~~~~~~~------~~~~l~~~~v~~i~~D  321 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQ--------IRFEFIREGD------NNYSLSNASARYIFQD  321 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------------CEEECBCS------STTSBSSSCEEEEEEC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeec--------cccccccCCC------CCCCCCCCeEEEEEEe
Confidence            35699999988876 4556665668888876421110000        0000000000      0001234679999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEee---------CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYK---------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---------~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      ++|. |..|+.++-|..|+..+........         .....|.++...++|. +..|+.++-|..|+..++......
T Consensus       322 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~  399 (781)
T 3v9f_A          322 SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNK  399 (781)
T ss_dssp             SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-
T ss_pred             CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEcc
Confidence            8886 4556666668999887554322211         0235688898887776 556676677999997654322111


Q ss_pred             ---cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          502 ---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       502 ---~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                         ......|.++...+++++ .+|+.++-|..+|..+++......  .....|.++...++|.+.+ |+. +-|..||.
T Consensus       400 ~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~  476 (781)
T 3v9f_A          400 ENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDL  476 (781)
T ss_dssp             ----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEES
T ss_pred             CCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeC
Confidence               123356888888877764 457776779999988776543221  1345799999988886544 455 56899998


Q ss_pred             CCCeeeEEeeCC-----CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEE
Q 005913          577 ASGRCVTPLMGH-----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYS  651 (670)
Q Consensus       577 ~~~~~~~~~~~h-----~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  651 (670)
                      .+++........     ...|.++...++|.+.+. +.++-|..||..+..... ..         .  .-.-....|.+
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~-~~---------~--~~~l~~~~i~~  543 (781)
T 3v9f_A          477 ASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRK-FN---------Q--YEGFCSNTINQ  543 (781)
T ss_dssp             SSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEE-EC---------T--TTTCSCSCEEE
T ss_pred             CCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEE-cc---------C--CCCCCCCeeEE
Confidence            876543322222     367899999998886554 443447778876542110 00         0  00112346889


Q ss_pred             EEEecCCcEEEE
Q 005913          652 LQFSRRNLLFAA  663 (670)
Q Consensus       652 l~fs~~~~~La~  663 (670)
                      +...++|.+.++
T Consensus       544 i~~d~~g~lWi~  555 (781)
T 3v9f_A          544 IYRSSKGQMWLA  555 (781)
T ss_dssp             EEECTTSCEEEE
T ss_pred             EEECCCCCEEEE
Confidence            988888876554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=0.00021  Score=82.99  Aligned_cols=244  Identities=12%  Similarity=0.047  Sum_probs=151.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ...|.++...++|. |.+|+.++-|..|+............               +..    .....-....|.++...
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~---------------~~~----~~~~~l~~~~v~~i~~d  371 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYS---------------PTQ----MNESSLSNKVVSSVCDD  371 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC-------------------C----CCSSCCSSSCEEEEEEC
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccC---------------ccc----cccCCCCCcceEEEEEc
Confidence            35699999998887 55677777788888653211000000               000    00000123569999998


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEe---eCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--ccC
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHL  505 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~--~~~  505 (670)
                      ++|.+ ..|+.++-|..|+..++......   ......|+++...++|. +..|+.++.+..++..+++......  ...
T Consensus       372 ~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~  449 (781)
T 3v9f_A          372 GQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNEL  449 (781)
T ss_dssp             TTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCC
T ss_pred             CCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCC
Confidence            87764 45565556888987654321110   12345688998887776 4557777789999987664332221  134


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-----~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      ..|.++...++++ |..|+. +-|..||..+++........     ...|.++...++|.+.+ |+.++-|..||..+++
T Consensus       450 ~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred             CeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence            6788998888776 444555 56899998877655433222     35799999999887655 4443447889987665


Q ss_pred             eeEEeeC----CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          581 CVTPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       581 ~~~~~~~----h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .. .+..    ....|.++...++|.+.++. .+|.|..||..+.
T Consensus       527 ~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~  569 (781)
T 3v9f_A          527 VR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNF  569 (781)
T ss_dssp             EE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTC
T ss_pred             EE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCC
Confidence            33 3321    23578999998888865554 4665588887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.40  E-value=2.3e-05  Score=77.34  Aligned_cols=190  Identities=15%  Similarity=0.124  Sum_probs=127.8

Q ss_pred             EeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCe--eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE
Q 005913          466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV--DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF  543 (670)
Q Consensus       466 V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v--~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~  543 (670)
                      ...+.|+ ++..+.+.+.+|.|+.+|+.+++.+..+ -. ...  ..+++..+ ...++.-.++.+.+||..+.+.+..+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEE
Confidence            4678887 4667778888899999999999988877 22 333  33555432 33334446889999999999999988


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC--CC---cceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HT---SCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       544 ~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~--h~---~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      ..... -..+  +++++.|+.+..++.|.++|..+.+.+.++..  +.   ..+..+.|. +|.+++..-.++.|.+.|.
T Consensus       133 ~~~~e-GwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          133 RYSGE-GWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             ECSSC-CCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred             eCCCc-eeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence            75322 2333  36788888888899999999999998887753  22   234667777 7766665556889999999


Q ss_pred             CCCccccccccccCCcccccccccCCCCCCeEEEEEecCC-cEEEEee
Q 005913          619 TTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAGA  665 (670)
Q Consensus       619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~gs  665 (670)
                      .++.............  ...........-.+.++|+|++ +++++|-
T Consensus       209 ~TG~V~~~Idl~~L~~--~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          209 ATGTVVGVIDASALTR--AVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTCBEEEEEECHHHHH--HHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCcEEEEEECCCCcc--cccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9987654433210000  0000011233467899999965 5666653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.40  E-value=0.0001  Score=71.92  Aligned_cols=199  Identities=13%  Similarity=0.079  Sum_probs=129.4

Q ss_pred             eEEeeCCC--ccEeEEEEecCCCEEEEEECC--CcEEEEECCCCceeEEecccCCC-eeEEEEcCCCCEEEE-EEcCCcE
Q 005913          456 LVCYKGHN--YPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIAT-GSSDKTV  529 (670)
Q Consensus       456 ~~~~~~h~--~~V~~l~~sp~g~~l~s~s~d--g~v~lwd~~~~~~~~~~~~~~~~-v~~v~~~p~~~~l~t-gs~dg~I  529 (670)
                      +..+ .|.  .-...+.|++ +..+.+.+.+  ..|+.+|+.+++.+..+...... -..+++.  ++.|.. .-.++.+
T Consensus        12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEE
T ss_pred             EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEE
Confidence            4445 343  3356889986 5666666665  48999999999998887643222 1334443  444444 4568899


Q ss_pred             EEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC--CC---cceEEEEEcCCCCEE
Q 005913          530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HT---SCVWTLAYSCEGSLL  604 (670)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~--h~---~~V~sl~~s~~g~~l  604 (670)
                      .+||..+.+.+..+...... ..+  .+++..|+.+..++.|.++|..+.+.+.++.-  +.   ..+..+.|. +|.++
T Consensus        88 ~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly  163 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL  163 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence            99999999999988754322 334  45677777777789999999999988887763  22   245566765 67766


Q ss_pred             EEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC-cEEEEe
Q 005913          605 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN-LLFAAG  664 (670)
Q Consensus       605 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~-~~La~g  664 (670)
                      +..-.+..|.+.|..++..........-.....  ..-.....-.+.++++|++ +++++|
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~--~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDAD--ALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEECGGGSTTTT--SCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCeEEEEECCCCCEEEEEECCcCccccc--cccCCcCCceEEEEEcCCCCEEEEEC
Confidence            666567899999999987654443211100000  0001233457899999975 555555

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.37  E-value=1.3e-05  Score=92.84  Aligned_cols=190  Identities=14%  Similarity=0.168  Sum_probs=116.9

Q ss_pred             CEEEEEEc-CCCCEEEEEeC-CC----eEEEEeCCCC-ceeE-EeeCCCccEeEEEEecCCCEEEEEECC-----CcEEE
Q 005913          423 PVYSASFS-PLGDFILSSSA-DT----TIRLWSTKLN-ANLV-CYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARI  489 (670)
Q Consensus       423 ~V~~l~~s-p~~~~L~s~s~-Dg----~I~lwd~~~~-~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~l  489 (670)
                      .+...+|| |||++|+.+.. +|    +|+++|+.++ +.+. .+.   ....++.|+|||+.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67789999 99998875432 33    5999999988 5321 111   123468899999888877765     36888


Q ss_pred             EECCCCce--eEEecc-cCCCeeEEEEcCCCCEEEEEEc---CCcEEEEECCCC--cE-EEEE-ecCCCCeEEEEEcCCC
Q 005913          490 WSMDRIQP--LRIMAG-HLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSG--EC-VRIF-IGHRSMILSLAMSPDG  559 (670)
Q Consensus       490 wd~~~~~~--~~~~~~-~~~~v~~v~~~p~~~~l~tgs~---dg~I~iwd~~~~--~~-~~~~-~~h~~~I~~l~~sp~g  559 (670)
                      +++.++..  ...+.. .......+.|+|+|++|+..+.   ...|+++|+.++  .. ++.+ ....+...++.|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            88877643  233332 2234567899999999887663   346888999875  23 1333 3334555666655444


Q ss_pred             CEEEEEECC----CeEEEEeCCCCeeeEE-eeCCCc--ceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913          560 RYMASGDED----GTIMMWDLASGRCVTP-LMGHTS--CVWTLAYSCEGSLLASGSADCTVKLW  616 (670)
Q Consensus       560 ~~l~sg~~d----g~I~iwDl~~~~~~~~-~~~h~~--~V~sl~~s~~g~~l~sgs~Dg~I~iw  616 (670)
                      .+++....+    ..|..+|+.++..... +..|..  .+.++.+. .+.++++...+|..++|
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            444444333    3688888765322222 333433  45556665 34566677777765544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.34  E-value=0.0015  Score=69.42  Aligned_cols=205  Identities=9%  Similarity=-0.041  Sum_probs=135.4

Q ss_pred             cCccCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEEC
Q 005913          419 GHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSM  492 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~-s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~  492 (670)
                      .....+.+++|++.+..|..+ ...+.|+.+++...    ...............+++.+ .+..+++-...+.|.+.++
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence            345678899999876665544 45788999998752    23333333444577899998 4555555566789999999


Q ss_pred             CCCceeEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCC
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDG  569 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg  569 (670)
                      +.......+.........++++|.+.+|+....  .+.|...++............-.....|+++|++..|+.+. ..+
T Consensus       189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence            876655555555567899999997766666543  36899998865444433333335678999999877777665 467


Q ss_pred             eEEEEeCCCCeeeEEeeC--CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccc
Q 005913          570 TIMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~--h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      .|..+|+...........  .-....++++. .+.++++-...+.|..++..++...
T Consensus       269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence            899999865433322222  22345677773 4556666667788999986666443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.34  E-value=0.0003  Score=73.40  Aligned_cols=210  Identities=8%  Similarity=-0.048  Sum_probs=131.6

Q ss_pred             ecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          348 INTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      .........++|++....|. +-...+.|..+++.....                            ............+
T Consensus        69 ~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g  120 (349)
T 3v64_C           69 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG  120 (349)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------------EEEECSSCSCCCE
T ss_pred             ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----------------------------eEEEeCCCCCccE
Confidence            34445688999997655555 555678888888764211                            0111111234467


Q ss_pred             EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECC-CcEEEEECCCCceeEEecc
Q 005913          427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHD-RTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       427 l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~d-g~v~lwd~~~~~~~~~~~~  503 (670)
                      +++.+.+..| ++-...+.|.+.++............-.....+++.|.+..++ +-... +.|..++++..........
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  200 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT  200 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            8888755544 5555678899999885544444444445578999999555544 44444 7888888875443333333


Q ss_pred             cCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                      .......++++|++..|+.+. ..+.|..+|+........+.........+++ ..+..+++-...+.|..+|..+|+.+
T Consensus       201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence            445678999998776666554 4678999998754433334333445677887 34555555556788888887677665


Q ss_pred             EEee
Q 005913          583 TPLM  586 (670)
Q Consensus       583 ~~~~  586 (670)
                      ..+.
T Consensus       280 ~~i~  283 (349)
T 3v64_C          280 EIIR  283 (349)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.33  E-value=0.00018  Score=77.40  Aligned_cols=235  Identities=10%  Similarity=0.073  Sum_probs=140.4

Q ss_pred             CEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       353 ~V~~l~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ....++|+|+  ...|.++...+.|+.++....                             .+..+.+......+++|+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-----------------------------~v~~~~~~~~~P~giavd  190 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-----------------------------YVDIKTTNIGQCADVNFT  190 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-----------------------------EEEEECCCCSCEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-----------------------------EEEEeecCCCCccEEEEC
Confidence            3568899984  444555444488999987531                             122222344568899999


Q ss_pred             CCCCEEEEEeCC---C-eEEEEeCCCCce-eEEeeCCCccEeEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEe-c-
Q 005913          431 PLGDFILSSSAD---T-TIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-A-  502 (670)
Q Consensus       431 p~~~~L~s~s~D---g-~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg~v~lwd~~~~~~~~~~-~-  502 (670)
                      ++|+++++....   . .+...+...... ...+. .......++++| +|..+++-..++.|+.++..++.....+ . 
T Consensus       191 ~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~  269 (433)
T 4hw6_A          191 LNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM  269 (433)
T ss_dssp             TTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC
T ss_pred             CCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc
Confidence            999944444321   1 133333222111 01121 123356788999 6766666667788999999876652222 2 


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECC--CCcE--EEEEecC---------------CCCeEEEEE-------
Q 005913          503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIGH---------------RSMILSLAM-------  555 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~--~~~~--~~~~~~h---------------~~~I~~l~~-------  555 (670)
                      +....-..++|+|++++|+.+. ..+.|+.++..  ++..  ...+.+.               -.....+++       
T Consensus       270 ~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~  349 (433)
T 4hw6_A          270 DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA  349 (433)
T ss_dssp             SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred             CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence            1222234699999999665554 56789998865  3321  1223222               123567899       


Q ss_pred             --cCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC------------------CcceEEEEEc-CCCCEEEEEECCCcEE
Q 005913          556 --SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH------------------TSCVWTLAYS-CEGSLLASGSADCTVK  614 (670)
Q Consensus       556 --sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h------------------~~~V~sl~~s-~~g~~l~sgs~Dg~I~  614 (670)
                        .++|.++++-...+.|+.++. +|.. ..+.+.                  -.....|+++ ++|.++++-..++.|+
T Consensus       350 ~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr  427 (433)
T 4hw6_A          350 GEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR  427 (433)
T ss_dssp             TSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred             ccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence              677777777677789999984 5543 333221                  1236789999 6777777666778888


Q ss_pred             EEeCC
Q 005913          615 LWDVT  619 (670)
Q Consensus       615 iwd~~  619 (670)
                      .++++
T Consensus       428 ~i~~e  432 (433)
T 4hw6_A          428 KIAPE  432 (433)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            87753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.30  E-value=0.00016  Score=80.89  Aligned_cols=142  Identities=15%  Similarity=0.130  Sum_probs=94.5

Q ss_pred             CcEEEEECCCCceeEEecc--cCC-------CeeEEEEc-CCCC---EEEEEEcCCcEEEEECCCCcEEEEEecCC----
Q 005913          485 RTARIWSMDRIQPLRIMAG--HLS-------DVDCVRWH-INCN---YIATGSSDKTVRLWDVSSGECVRIFIGHR----  547 (670)
Q Consensus       485 g~v~lwd~~~~~~~~~~~~--~~~-------~v~~v~~~-p~~~---~l~tgs~dg~I~iwd~~~~~~~~~~~~h~----  547 (670)
                      +.|..+|.++++.+..+..  |..       ...-+... .+|+   .++.++.+|.++++|..+|+.+..+....    
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            5899999999999887753  211       11112222 4674   78889999999999999999887664331    


Q ss_pred             ---------CCe--------------------------------EEEEEcCCCCEEEEEE--------------------
Q 005913          548 ---------SMI--------------------------------LSLAMSPDGRYMASGD--------------------  566 (670)
Q Consensus       548 ---------~~I--------------------------------~~l~~sp~g~~l~sg~--------------------  566 (670)
                               .++                                ..++++|+...+++..                    
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                     000                                1346677655555432                    


Q ss_pred             -------------CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          567 -------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       567 -------------~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                                   .+|.|..||+.+++.+-+...+. ++..-.....+.+++.|+.||.++.||..+++.+.+.
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence                         26889999999999876654322 2222112224678888999999999999998765443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.27  E-value=0.00018  Score=80.62  Aligned_cols=148  Identities=14%  Similarity=0.132  Sum_probs=102.0

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEeeCCCc----cEeE-EEEecCCCEEEEEE------CCCcEEEEECCCCceeEEeccc
Q 005913          436 ILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD-VQFNPQGHYFASSS------HDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~-l~~sp~g~~l~s~s------~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      |+.++.|+.|..+|..+++.+-.......    .+.+ -.. .++ .+++++      .++.|+.+|..+++.+..+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            78888999999999999998776553221    1211 111 144 455554      3799999999999988766532


Q ss_pred             CCCe--------------------------------------eEEEEcCCCCEEEEEEcCC----------------cEE
Q 005913          505 LSDV--------------------------------------DCVRWHINCNYIATGSSDK----------------TVR  530 (670)
Q Consensus       505 ~~~v--------------------------------------~~v~~~p~~~~l~tgs~dg----------------~I~  530 (670)
                      ....                                      ..+++.+....++.++.++                .|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            1110                                      1345667788888877653                899


Q ss_pred             EEECCCCcEEEEEecCCC----------CeEEEEEc-CCC---CEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          531 LWDVSSGECVRIFIGHRS----------MILSLAMS-PDG---RYMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       531 iwd~~~~~~~~~~~~h~~----------~I~~l~~s-p~g---~~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      .+|..+|+.+..+.....          ++. +... .+|   ..++.++.+|.++++|..+|+.+....
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            999999999988764321          121 2222 567   577889999999999999999886554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.25  E-value=0.00042  Score=73.31  Aligned_cols=211  Identities=8%  Similarity=-0.049  Sum_probs=133.9

Q ss_pred             ecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      .........++|++.+..| ++-...+.|..|++.....                            .............
T Consensus       112 ~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g  163 (386)
T 3v65_B          112 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG  163 (386)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE----------------------------EEEECSSCSCCCC
T ss_pred             ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc----------------------------EEEEeCCCCCccE
Confidence            3444568899999765554 4555678888888764211                            0111111223456


Q ss_pred             EEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CC-CcEEEEECCCCceeEEecc
Q 005913          427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       427 l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-g~v~lwd~~~~~~~~~~~~  503 (670)
                      +++.+.+..| ++-...+.|.+.++............-.....+++.|.+.+++.+. .. +.|..++++..........
T Consensus       164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  243 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT  243 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            8888755544 4555677899988875544444444445678999998666555544 44 6788888876544444444


Q ss_pred             cCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                      .......++|+|++..|+.+. ..+.|..+|+........+.........+++ ..+..+++-...+.|..+|..+|+.+
T Consensus       244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence            455678999998766665554 4678999998654443334333445678888 34555666667788988887777766


Q ss_pred             EEeeC
Q 005913          583 TPLMG  587 (670)
Q Consensus       583 ~~~~~  587 (670)
                      ..+..
T Consensus       323 ~~i~~  327 (386)
T 3v65_B          323 EIIRN  327 (386)
T ss_dssp             EEEEC
T ss_pred             EEEcc
Confidence            66553

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.25  E-value=0.00026  Score=79.06  Aligned_cols=151  Identities=11%  Similarity=0.053  Sum_probs=102.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCc----cEeE-EEEecCCCEEEEEEC------CCcEEEEECCCCceeEEe
Q 005913          433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD-VQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~-l~~sp~g~~l~s~s~------dg~v~lwd~~~~~~~~~~  501 (670)
                      +..++.++.|+.|..+|..+++.+-.+.....    .+.+ -... ++ .+++++.      ++.|+.+|..+++.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            56788888899999999999988876653221    1211 1111 34 5555554      799999999999988766


Q ss_pred             cccCCC--------------------------------------eeEEEEcCCCCEEEEEEcC----------------C
Q 005913          502 AGHLSD--------------------------------------VDCVRWHINCNYIATGSSD----------------K  527 (670)
Q Consensus       502 ~~~~~~--------------------------------------v~~v~~~p~~~~l~tgs~d----------------g  527 (670)
                      ......                                      ...+++.+....++.++.+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            532110                                      0235667777777776642                3


Q ss_pred             cEEEEECCCCcEEEEEecCC----------CCeEEEEEcCCCC---EEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          528 TVRLWDVSSGECVRIFIGHR----------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       528 ~I~iwd~~~~~~~~~~~~h~----------~~I~~l~~sp~g~---~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      .|..+|..+|+.+..+....          .++ -+...++|+   .++.++.+|.++++|..+|+.+....
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence            59999999999988876321          122 122334774   67788999999999999999886654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.22  E-value=0.0033  Score=64.35  Aligned_cols=183  Identities=13%  Similarity=0.008  Sum_probs=118.2

Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEE-EEEECCCcEEEEECCC----CceeEEecccCCCee
Q 005913          435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDR----IQPLRIMAGHLSDVD  509 (670)
Q Consensus       435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-~s~s~dg~v~lwd~~~----~~~~~~~~~~~~~v~  509 (670)
                      +|+.+.. ..|+..|+.+......... ...+..++|++.+..+ ++-...+.|..++++.    ......+........
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            4444444 4699999987765554443 3457789999865554 4445668999999876    233333433345678


Q ss_pred             EEEEcCCCC-EEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC--CeEEEEeCCCCeeeEEe-
Q 005913          510 CVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED--GTIMMWDLASGRCVTPL-  585 (670)
Q Consensus       510 ~v~~~p~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d--g~I~iwDl~~~~~~~~~-  585 (670)
                      .+++.+.+. ..++-...+.|.++|+........+.........++++|.+..|+.+...  +.|..+++... ....+ 
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~  159 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV  159 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEE
Confidence            899987554 44555567899999987554444444344567899999976666655542  78999987533 33333 


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT  620 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~  620 (670)
                      ...-.....+++++++..|+.+. ..+.|..+|+..
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            22234678999998766665554 567899999875

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.22  E-value=0.0011  Score=68.02  Aligned_cols=201  Identities=8%  Similarity=-0.011  Sum_probs=131.1

Q ss_pred             cCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCCcee
Q 005913          422 GPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPL  498 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~~~~  498 (670)
                      ..+.+++|.+.+..| .+-...+.|..+++..... .......-.....+++.+. +..+++-...+.|.+++++.....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            456789999865555 4555678899999886532 2222222234567889874 445555556789999999865444


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD  575 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwD  575 (670)
                      ..+.........++++|.+..|+.+..  .+.|...++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            444455567889999997666666553  57888888764333322323334568999999777666654 568899999


Q ss_pred             CCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       576 l~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +..........+.......+++. .+.++++-...+.|..++..++..
T Consensus       195 ~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          195 LDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             TTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence            86433322223334456777775 445666666778899999876654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.20  E-value=0.0028  Score=67.20  Aligned_cols=225  Identities=8%  Similarity=0.031  Sum_probs=141.3

Q ss_pred             eecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          347 FINTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +......+..++|++.+..|. +-...+.|..+++......                        ...............
T Consensus       107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------------------------~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L          107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPD  162 (400)
T ss_dssp             EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CCCEEEECSSCSCEE
T ss_pred             eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------------------------CcceEEEeCCCCCcc
Confidence            344556789999998655555 4456678888887641100                        001112222335678


Q ss_pred             EEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEec
Q 005913          426 SASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       426 ~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~~~~~~~~~  502 (670)
                      ++++.+.+. +.++-...+.|.+.++........+...-.....|++.|.+.+++.+..  .+.|...+++.........
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            899988544 4455566789999999866555555544455789999996655555542  3788888887655544445


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      ........+++++++..|+.+. ..+.|..+|+...........  .-.....+++. .+.++++-...+.|..+|..+|
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            4556789999998777776664 457899999865443333332  22345577763 3445556666788999998888


Q ss_pred             eeeEEeeCCCcceEEEE
Q 005913          580 RCVTPLMGHTSCVWTLA  596 (670)
Q Consensus       580 ~~~~~~~~h~~~V~sl~  596 (670)
                      +.+..+........++.
T Consensus       322 ~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          322 SDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             CCCEEEECSCSCEEEEE
T ss_pred             CceEEEecCCCCCceEE
Confidence            77766654443444443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=0.00055  Score=73.51  Aligned_cols=193  Identities=11%  Similarity=0.081  Sum_probs=119.4

Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CC----cEEEEECCCCc
Q 005913          423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR----TARIWSMDRIQ  496 (670)
Q Consensus       423 ~V~~l~~sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg----~v~lwd~~~~~  496 (670)
                      ....++|+| ++..|..+...+.|+.+|+.++....... .......++|+++|.+++++.. ++    .+..++.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457889998 45666666655889999998665444333 4455789999999996666654 22    23334432211


Q ss_pred             e-eEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEEec-CCCCeEEEEEcCCCCEEEEE-ECCCeEE
Q 005913          497 P-LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASG-DEDGTIM  572 (670)
Q Consensus       497 ~-~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~sg-~~dg~I~  572 (670)
                      . ...+. .......++++| ++..+++-..++.|+.++..++........ .......++|+|+|++|+.+ ...+.|.
T Consensus       217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1 12222 234567888999 677666666788999999987665333322 22346789999999965554 4678899


Q ss_pred             EEeCCC--Cee--eEEeeCC---------------CcceE-EEEEc--------CCCCEEEEEECCCcEEEEe
Q 005913          573 MWDLAS--GRC--VTPLMGH---------------TSCVW-TLAYS--------CEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       573 iwDl~~--~~~--~~~~~~h---------------~~~V~-sl~~s--------~~g~~l~sgs~Dg~I~iwd  617 (670)
                      .++...  +..  +..+.+.               -.... .++..        ++|.++++-...+.|+.++
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~  368 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT  368 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence            987653  221  1122111               01123 45553        3466666666678888887

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.12  E-value=0.0015  Score=67.10  Aligned_cols=207  Identities=8%  Similarity=0.015  Sum_probs=130.2

Q ss_pred             CEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          353 GLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       353 ~V~~l~fs~d~-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ....++|++.+ .+..+-...+.|..+++.....                           ........-....++++.+
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~---------------------------~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------VQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC---------------------------CCEEEEECCSCCCEEEEET
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc---------------------------eEEEEcCCCCCccEEEEEc
Confidence            46788999854 4445555677888888764210                           0011112223456788887


Q ss_pred             CCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecccCCCe
Q 005913          432 LGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSDV  508 (670)
Q Consensus       432 ~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~dg~v~lwd~~~~~~~~~~~~~~~~v  508 (670)
                      .+. +.++-...+.|.++++..................+++.|.+.+++.+.  ..+.|...+++...............
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P  168 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP  168 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence            555 445555678999999885544333434445578999999655555554  35788888887544333334444567


Q ss_pred             eEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC
Q 005913          509 DCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG  587 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~  587 (670)
                      +.++++|++..|+.+. ..+.|..+|+..........+.......+++.. +..+.+-...+.|..+|..+|+.+..+..
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence            8999999766666554 567899999864433333333344567777753 34555555678899999888876655543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.12  E-value=0.0029  Score=62.37  Aligned_cols=197  Identities=13%  Similarity=0.122  Sum_probs=126.6

Q ss_pred             cCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeee-ecCccCEEE
Q 005913          349 NTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QGHSGPVYS  426 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~  426 (670)
                      +..+.+..++|+|++..| ++...++.|...|... .                            ..+.+ .+-....-+
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~----------------------------v~~~i~l~g~~D~EG   74 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-D----------------------------LIRTIPLDFVKDLET   74 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-C----------------------------EEEEEECSSCSSEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-C----------------------------EEEEEecCCCCChHH
Confidence            444679999999986654 5577778887777652 1                            11111 112255778


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEee------CCCccEeEEEEecCCCEEEEEECCCcEEEEECC---C
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANL---VCYK------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---R  494 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~---~~~~------~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~---~  494 (670)
                      |++.+++.++++.-.++.+.++++.....+   ....      ..+.....++|+|.+..|+++.......+|.++   .
T Consensus        75 Ia~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~  154 (255)
T 3qqz_A           75 IEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS  154 (255)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred             eEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence            889888877777667788999987755432   2221      134456899999998877777765555555553   1


Q ss_pred             CceeEEec-------ccCCCeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEEecCC---------CCeEEEEEcC
Q 005913          495 IQPLRIMA-------GHLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSLAMSP  557 (670)
Q Consensus       495 ~~~~~~~~-------~~~~~v~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~h~---------~~I~~l~~sp  557 (670)
                      ...+..+.       .+...+..++++|....++ .....+.+..+|.. |+.+..+.-..         ...-.|+|.+
T Consensus       155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~  233 (255)
T 3qqz_A          155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA  233 (255)
T ss_dssp             SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred             CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence            12233321       2345688999999765554 45566788889965 55665554222         2568899999


Q ss_pred             CCCEEEEEECCCeEEEEeC
Q 005913          558 DGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       558 ~g~~l~sg~~dg~I~iwDl  576 (670)
                      +|+ |+..++.+.++.+.-
T Consensus       234 ~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          234 SGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             TCC-EEEEETTTEEEEEEC
T ss_pred             CCC-EEEEcCCceEEEEEe
Confidence            998 445577777777654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.11  E-value=0.0011  Score=71.36  Aligned_cols=194  Identities=12%  Similarity=0.047  Sum_probs=120.9

Q ss_pred             CEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC---Cc-EEEEECCCCc
Q 005913          423 PVYSASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---RT-ARIWSMDRIQ  496 (670)
Q Consensus       423 ~V~~l~~sp~--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---g~-v~lwd~~~~~  496 (670)
                      ...+++|+|+  +..|..+...+.|+.++..++....... ......+++|+++|..+++....   .. +...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568999985  4455555544889999997666544433 44457899999999944443321   12 3333322211


Q ss_pred             e-eEEecccCCCeeEEEEcC-CCCEEEEEEcCCcEEEEECCCCcEEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CCCeE
Q 005913          497 P-LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-IG-HRSMILSLAMSPDGRYMASGD-EDGTI  571 (670)
Q Consensus       497 ~-~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~-h~~~I~~l~~sp~g~~l~sg~-~dg~I  571 (670)
                      . ...+. .......++++| +++.+++-..++.|+.+|..++.....+ .. ....-..++|+|+|++|+.+. ..+.|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            1 11222 334567788999 6776666667789999999877763332 22 122235799999999665554 56889


Q ss_pred             EEEeCC--CCee--eEEeeCC---------------CcceEEEEE---------cCCCCEEEEEECCCcEEEEeC
Q 005913          572 MMWDLA--SGRC--VTPLMGH---------------TSCVWTLAY---------SCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       572 ~iwDl~--~~~~--~~~~~~h---------------~~~V~sl~~---------s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      +.+|+.  ++..  ...+.+.               -.....+++         .++|.++++-...+.|+.++.
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            998865  3321  1112111               123567999         778888877777889999884

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.04  E-value=5.4e-05  Score=86.23  Aligned_cols=228  Identities=12%  Similarity=0.090  Sum_probs=130.4

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCcee--EEeeC-CCccEeEEEEecCCCEEEEEEC-CCcEEE
Q 005913          426 SASFSP-LGDFILSSSADT-----------TIRLWSTKLNANL--VCYKG-HNYPVWDVQFNPQGHYFASSSH-DRTARI  489 (670)
Q Consensus       426 ~l~~sp-~~~~L~s~s~Dg-----------~I~lwd~~~~~~~--~~~~~-h~~~V~~l~~sp~g~~l~s~s~-dg~v~l  489 (670)
                      ++++.+ +++.++.|+.+.           .+.+||..+++..  ..... +.....++++..++..+++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 788888887543           5889999876532  22222 2333345778889999999984 458999


Q ss_pred             EECCCCceeEEecccCCC-eeEEEEcCCCCEEEEEE-cC-----CcEEEEECCCCcEEEEE----ecCCCCeEEEEEcCC
Q 005913          490 WSMDRIQPLRIMAGHLSD-VDCVRWHINCNYIATGS-SD-----KTVRLWDVSSGECVRIF----IGHRSMILSLAMSPD  558 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~~~-v~~v~~~p~~~~l~tgs-~d-----g~I~iwd~~~~~~~~~~----~~h~~~I~~l~~sp~  558 (670)
                      ||..+.+-...-..+... -.+++..++++.++.|+ .+     ..+.+||..+++....-    ......-....+..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            998765433222212121 23455667999999988 34     57999999887644320    000000000122345


Q ss_pred             CCEEEEEECCC---------eEEEEeCCCCeeeEEeeCCC---------cceEEEEEc-CCCCEEEEEECCC--------
Q 005913          559 GRYMASGDEDG---------TIMMWDLASGRCVTPLMGHT---------SCVWTLAYS-CEGSLLASGSADC--------  611 (670)
Q Consensus       559 g~~l~sg~~dg---------~I~iwDl~~~~~~~~~~~h~---------~~V~sl~~s-~~g~~l~sgs~Dg--------  611 (670)
                      +..++.|+.+|         .+..||..+.........+.         ..-.++.|. .++++++.|+.++        
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~  429 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  429 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence            55555565443         56788887765433322111         122445554 3778888888543        


Q ss_pred             ---cEEEEeCCCCccccccccccCCccccccc--ccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          612 ---TVKLWDVTTSTKVLKTEEKSGTNRLRSLK--TLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       612 ---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                         .|.+||..+..-             ..+.  .++... .-.+....|+|++++.|+.+
T Consensus       430 ~~~~v~~yd~~~~~W-------------~~~~~~~mp~~R-~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          430 NAHIITLGEPGTSPN-------------TVFASNGLYFAR-TFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             CEEEEECCSTTSCCE-------------EEECTTCCSSCC-BSCEEEECTTSCEEEECCBS
T ss_pred             cceEEEcCCCCCCCe-------------eEEccCCCCCCc-ccCCeEECCCCCEEEECCcc
Confidence               566676655321             1111  222221 12344566899999999865

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.02  E-value=0.0036  Score=64.37  Aligned_cols=189  Identities=11%  Similarity=0.059  Sum_probs=110.6

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEEC--CCCcee
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPL  498 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~--~~~~~~  498 (670)
                      +.++.+.+.+++..++++ .+|.|.. ..+.+.. ..........+..+.+.+++.+++++...+..+-+|-  .+-+.+
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~  199 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH  199 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred             CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC
Confidence            456778877766666555 4565432 2222332 2223345567889999999887776644333333332  122222


Q ss_pred             EEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-c---CCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 005913          499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G---HRSMILSLAMSPDGRYMASGDEDGTIMMW  574 (670)
Q Consensus       499 ~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~---h~~~I~~l~~sp~g~~l~sg~~dg~I~iw  574 (670)
                        -......+..+.+.+++..++ ++.+|.+++.+...++.-..+. .   +...+.++++.+++..++++. +|.| ++
T Consensus       200 --~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~  274 (327)
T 2xbg_A          200 --NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LC  274 (327)
T ss_dssp             --ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EE
T ss_pred             --CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EE
Confidence              233456788999999887654 4567888776433233322221 1   223588999998877666654 6766 44


Q ss_pred             eCCCCeeeEEee---CCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          575 DLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       575 Dl~~~~~~~~~~---~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      ....|+.-..+.   .+...++++.|.+++ .+++++.+|.|.-++-
T Consensus       275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          275 SQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             eCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            545454433333   234567889887554 4667778898776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=0.0028  Score=68.56  Aligned_cols=239  Identities=9%  Similarity=0.041  Sum_probs=142.4

Q ss_pred             CEEEEEEcC-C-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec----CccCEEE
Q 005913          353 GLNCASISQ-D-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG----HSGPVYS  426 (670)
Q Consensus       353 ~V~~l~fs~-d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~  426 (670)
                      ....|+|+| + ++++++-...+.|++.|+....                             +..+..    .......
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----------------------------v~~l~~~~~~~~~~p~~  190 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----------------------------LSSPLNINTIPTNRIRS  190 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----------------------------EEEEECCTTSSCSBEEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----------------------------EEEEEccCccccCCCcE
Confidence            467889998 3 4444444444668888876421                             111111    1235889


Q ss_pred             EEE-------cCCCCEEEEEeCCC-------eEEEEeCCC-Ccee-----EEeeCCCccEeEEEEec-CCCEEEEEECCC
Q 005913          427 ASF-------SPLGDFILSSSADT-------TIRLWSTKL-NANL-----VCYKGHNYPVWDVQFNP-QGHYFASSSHDR  485 (670)
Q Consensus       427 l~~-------sp~~~~L~s~s~Dg-------~I~lwd~~~-~~~~-----~~~~~h~~~V~~l~~sp-~g~~l~s~s~dg  485 (670)
                      ++|       +++++.|+++...+       .|.+++... +...     ..+.... ....++++| ++.++++-..++
T Consensus       191 ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g  269 (496)
T 3kya_A          191 IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKG  269 (496)
T ss_dssp             EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTT
T ss_pred             EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCC
Confidence            999       99999776665543       266665333 1111     2222212 345788899 455556666778


Q ss_pred             cEEEEECC-------CCce-----------eEE-ec-ccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEEC--CCCcE--E
Q 005913          486 TARIWSMD-------RIQP-----------LRI-MA-GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDV--SSGEC--V  540 (670)
Q Consensus       486 ~v~lwd~~-------~~~~-----------~~~-~~-~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~--~~~~~--~  540 (670)
                      .|..+|++       ++..           ... +. +.......++|+|+|++|+.+ +....|+.++.  .++..  .
T Consensus       270 ~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~  349 (496)
T 3kya_A          270 QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP  349 (496)
T ss_dssp             EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred             EEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc
Confidence            89999987       4442           111 22 223446789999999965554 45678888654  33322  1


Q ss_pred             EEEecC---C------------CCeE-EEEEc-------CCCCEEEEEECCCeEEEEeCCCCeeeEEeeCC---------
Q 005913          541 RIFIGH---R------------SMIL-SLAMS-------PDGRYMASGDEDGTIMMWDLASGRCVTPLMGH---------  588 (670)
Q Consensus       541 ~~~~~h---~------------~~I~-~l~~s-------p~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h---------  588 (670)
                      ..+.+.   .            .... .++..       ++|.++++=.....|+.++ .+|. +.++-+.         
T Consensus       350 ~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~  427 (496)
T 3kya_A          350 YNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADG  427 (496)
T ss_dssp             EEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHS
T ss_pred             EEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCc
Confidence            233332   1            1233 44554       4566666666778999999 4563 3344221         


Q ss_pred             ---------------CcceEEEEEcCC-CCEEEEEECCCcEEEEeCCCCcc
Q 005913          589 ---------------TSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       589 ---------------~~~V~sl~~s~~-g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                                     -.....|+++++ |.++++=+.+..|+.+++.....
T Consensus       428 ~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             CSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             cccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence                           023678999996 77777777788999999877544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.00  E-value=0.00054  Score=76.56  Aligned_cols=178  Identities=14%  Similarity=0.123  Sum_probs=118.1

Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CeEEEEeCCCCceeEEeeC--CC--------ccEeEEEE
Q 005913          426 SASFSPLGDFILSSSA--------------------D----TTIRLWSTKLNANLVCYKG--HN--------YPVWDVQF  471 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s~--------------------D----g~I~lwd~~~~~~~~~~~~--h~--------~~V~~l~~  471 (670)
                      .+++.|....++.++.                    |    ++|..+|..+++.+-.++.  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4677777777776653                    2    6899999999999887764  21        1221 122


Q ss_pred             e-cCCC---EEEEEECCCcEEEEECCCCceeEEecccCC------------C----------------------------
Q 005913          472 N-PQGH---YFASSSHDRTARIWSMDRIQPLRIMAGHLS------------D----------------------------  507 (670)
Q Consensus       472 s-p~g~---~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~------------~----------------------------  507 (670)
                      . .+|+   .++.++.+|.++++|.++++.+..+.....            .                            
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            1 4663   788899999999999999988766543210            0                            


Q ss_pred             -----eeEEEEcCCCCEEEEEE---------------------------------cCCcEEEEECCCCcEEEEEecCCCC
Q 005913          508 -----VDCVRWHINCNYIATGS---------------------------------SDKTVRLWDVSSGECVRIFIGHRSM  549 (670)
Q Consensus       508 -----v~~v~~~p~~~~l~tgs---------------------------------~dg~I~iwd~~~~~~~~~~~~h~~~  549 (670)
                           -..++++|+...+++..                                 .+|.|..||+.+|+.+....... +
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~  487 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P  487 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence                 01346666655555433                                 25789999999999887765432 2


Q ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcce-EEEEEcCCCCEEE
Q 005913          550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV-WTLAYSCEGSLLA  605 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V-~sl~~s~~g~~l~  605 (670)
                      +..-.....+..++.|+.||.++.||.++|+.+.+++...+.+ .-+.|..+|+.++
T Consensus       488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            2221222246788889999999999999999998887543322 1256666776433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.94  E-value=0.0018  Score=65.89  Aligned_cols=194  Identities=9%  Similarity=0.085  Sum_probs=127.7

Q ss_pred             EEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeeCC-------CccEeEEEE---ecCCCEEEEEE-----------
Q 005913          425 YSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQF---NPQGHYFASSS-----------  482 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~---sp~g~~l~s~s-----------  482 (670)
                      -+++|.+....+..++ ..++|..|+...+........+       ...+..+.|   .|++..+++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            3678988666666665 6899999999755443332211       124679999   68887777544           


Q ss_pred             --CCCcEEEEECC---CCceeEEec--c-----------cCCCeeEEEEcCCCCEEEEEEcC-CcEEEEECCCCcEEEEE
Q 005913          483 --HDRTARIWSMD---RIQPLRIMA--G-----------HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIF  543 (670)
Q Consensus       483 --~dg~v~lwd~~---~~~~~~~~~--~-----------~~~~v~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~~  543 (670)
                        .++.|..+|+.   +++.+....  .           -......++..++|+..++++.. +.|..++.... .+..+
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeee
Confidence              26789999999   777776554  1           11247889999999999999988 88888886544 33322


Q ss_pred             e-c-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee--eEEee--CC---CcceEEE-EEcCCCCE-EEEEE
Q 005913          544 I-G-----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--VTPLM--GH---TSCVWTL-AYSCEGSL-LASGS  608 (670)
Q Consensus       544 ~-~-----h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~--~~~~~--~h---~~~V~sl-~~s~~g~~-l~sgs  608 (670)
                      . .     .....+.|+++|+|+.|++....|.|..+|+.+...  +. ..  +.   -.....+ .--.+|+. |++.+
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEcC
Confidence            2 1     112367899999999999887799999999885332  21 11  21   1123333 33347777 55556


Q ss_pred             CCCcEEEEeCCC
Q 005913          609 ADCTVKLWDVTT  620 (670)
Q Consensus       609 ~Dg~I~iwd~~~  620 (670)
                      ..+.+.+.+-+.
T Consensus       254 ~~~~~~l~S~Dg  265 (334)
T 2p9w_A          254 APYAISFRSWDN  265 (334)
T ss_dssp             TTEEEEEECSST
T ss_pred             CCCEEEEECCCC
Confidence            666666665444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.92  E-value=0.0022  Score=65.85  Aligned_cols=184  Identities=17%  Similarity=0.258  Sum_probs=124.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecC----CCE--EEEE-E-C--CCcEEEEECC-CCceeEE
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHY--FASS-S-H--DRTARIWSMD-RIQPLRI  500 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~----g~~--l~s~-s-~--dg~v~lwd~~-~~~~~~~  500 (670)
                      ...+++.....+-+.+||+ .++.+..+..  +.+..+..-|.    |..  ++.+ . .  +++|++|+++ ....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3456777777888999999 6888877754  45666666652    222  3333 3 3  5799999774 2224555


Q ss_pred             ecc------c-CCCeeEEEE--cCC-CC-EEEEEEcCCcEEEEECC-------CCcEEEEEecCCCCeEEEEEcCCCCEE
Q 005913          501 MAG------H-LSDVDCVRW--HIN-CN-YIATGSSDKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYM  562 (670)
Q Consensus       501 ~~~------~-~~~v~~v~~--~p~-~~-~l~tgs~dg~I~iwd~~-------~~~~~~~~~~h~~~I~~l~~sp~g~~l  562 (670)
                      +..      . ...+..+++  +|. +. ++++...+|.+..|++.       +.+.++.|.. .+.+-.+...+....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            422      1 145666776  664 43 68888889999999883       3456777764 4578889999988999


Q ss_pred             EEEECCCeEEEEeCC-----CCeeeEEee-CC-CcceEEEEE--cCCCC-EEEEEE-CCCcEEEEeCC
Q 005913          563 ASGDEDGTIMMWDLA-----SGRCVTPLM-GH-TSCVWTLAY--SCEGS-LLASGS-ADCTVKLWDVT  619 (670)
Q Consensus       563 ~sg~~dg~I~iwDl~-----~~~~~~~~~-~h-~~~V~sl~~--s~~g~-~l~sgs-~Dg~I~iwd~~  619 (670)
                      +.+-++.-|..+|..     +++.+..+. ++ ...+..|++  .++++ +|++++ .++++.|||..
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            999999878888855     345555542 22 246788887  45555 565555 67899999996

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.91  E-value=0.01  Score=68.51  Aligned_cols=205  Identities=8%  Similarity=-0.055  Sum_probs=131.7

Q ss_pred             ecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC----ceeEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEE
Q 005913          418 QGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWS  491 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd  491 (670)
                      ......+.+++|.+....|+ +-...+.|+.+++...    .....+.........|++.+.+.. +++-...+.|.+.+
T Consensus       420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence            33456778999998655554 5556688999998753    223334433445678999886654 45555678999999


Q ss_pred             CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC
Q 005913          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-ED  568 (670)
Q Consensus       492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~d  568 (670)
                      ++.......+.........|+++|.+.+|+....  .+.|...++........+...-.....|++++.+..|+.+. ..
T Consensus       500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            9876555555555667899999998666666543  26799999865544444443345688999998777666664 45


Q ss_pred             CeEEEEeCCCCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          569 GTIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      +.|..+|+........+...  -....+|++. .+.++++-...+.|...+..++..
T Consensus       580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  635 (791)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             CcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcc
Confidence            78999998654443333321  2334567664 334555555667888888666543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.85  E-value=0.0069  Score=69.84  Aligned_cols=215  Identities=9%  Similarity=0.038  Sum_probs=133.0

Q ss_pred             eecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          347 FINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      +......+..++|++....| ++-...+.|+.+++......                        ......+........
T Consensus       419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~------------------------~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPD  474 (791)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCC
T ss_pred             eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC------------------------cceeEEEecCCCCcc
Confidence            34445668889999855444 45555677888887641100                        001112222334566


Q ss_pred             EEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-C-CcEEEEECCCCceeEEec
Q 005913          426 SASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-D-RTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       426 ~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d-g~v~lwd~~~~~~~~~~~  502 (670)
                      +|++.+.+..|+ +-...+.|.+.++........+...-.....|++.|.+.+|+.+.. . +.|...+++.......+.
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            788988775554 5556789999999865544444444456789999997555555542 2 678888988665555555


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      ........|++.+.+..|+.+. ..+.|..+++............  -.....|++.. +.++++-...+.|...|..+|
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence            5556789999998777666654 4568999998655444444332  22345666643 234444446688888888777


Q ss_pred             eeeEEee
Q 005913          580 RCVTPLM  586 (670)
Q Consensus       580 ~~~~~~~  586 (670)
                      +.+..+.
T Consensus       634 ~~~~~l~  640 (791)
T 3m0c_C          634 SDVNLLA  640 (791)
T ss_dssp             CCCEEEE
T ss_pred             cceEEee
Confidence            6555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.80  E-value=0.0087  Score=62.20  Aligned_cols=231  Identities=10%  Similarity=0.130  Sum_probs=125.4

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      ..-..-..++|.|||+++++ ..+|.|.+++ .. ......                       ..............|+
T Consensus        28 ~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~~~~~-----------------------~~~v~~~g~~~p~gia   81 (352)
T 2ism_A           28 GGLEVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RLSTYA-----------------------ELSVYHRGESGLLGLA   81 (352)
T ss_dssp             CCCSCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EEEEEE-----------------------ECCCCCSTTCSEEEEE
T ss_pred             CCCCCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-CccEee-----------------------cceEeecCCCCceeEE
Confidence            33446789999999996555 5679999988 32 100000                       0001112235678999


Q ss_pred             EcCC---CCEEEEEeC-C-----CeEEEEeCCCCc-----eeE-Eee---CCCccEeEEEEecCCCEEEEEEC-------
Q 005913          429 FSPL---GDFILSSSA-D-----TTIRLWSTKLNA-----NLV-CYK---GHNYPVWDVQFNPQGHYFASSSH-------  483 (670)
Q Consensus       429 ~sp~---~~~L~s~s~-D-----g~I~lwd~~~~~-----~~~-~~~---~h~~~V~~l~~sp~g~~l~s~s~-------  483 (670)
                      |+|+   +..|..+.. .     +.|..|+.....     .+. .+.   +.......++|.|+|..+++.+.       
T Consensus        82 ~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~  161 (352)
T 2ism_A           82 LHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELA  161 (352)
T ss_dssp             ECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGG
T ss_pred             ECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccc
Confidence            9998   555554433 2     568888876431     111 122   11123468999999976666432       


Q ss_pred             ------CCcEEEEECCCC-------------ceeEEecccCCCeeEEEEcC-CCCEEEEEEcCCcE------EEEECCCC
Q 005913          484 ------DRTARIWSMDRI-------------QPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTV------RLWDVSSG  537 (670)
Q Consensus       484 ------dg~v~lwd~~~~-------------~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg~I------~iwd~~~~  537 (670)
                            .|.|.-++.+..             .......++ .....++|+| ++..+++-.....+      .+.-+..+
T Consensus       162 ~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G  240 (352)
T 2ism_A          162 QDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPG  240 (352)
T ss_dssp             GCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTT
T ss_pred             cCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccC
Confidence                  145666665531             111111233 3466789999 66655553332221      12222222


Q ss_pred             c------------------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee------eEEeeCCCcceE
Q 005913          538 E------------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC------VTPLMGHTSCVW  593 (670)
Q Consensus       538 ~------------------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~------~~~~~~h~~~V~  593 (670)
                      .                  ++..+ .+......++| .+|..+++.-..+.|...++.....      ...+..-...+.
T Consensus       241 ~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~  318 (352)
T 2ism_A          241 GNYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLR  318 (352)
T ss_dssp             CBCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEE
T ss_pred             CcCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCee
Confidence            1                  22223 22234567777 4676666666667788887754321      122222235788


Q ss_pred             EEEEcCCCCEEEEEE
Q 005913          594 TLAYSCEGSLLASGS  608 (670)
Q Consensus       594 sl~~s~~g~~l~sgs  608 (670)
                      .+++.|||.++++..
T Consensus       319 ~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          319 EVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEECTTSCEEEEEC
T ss_pred             EEEECCCCcEEEEEe
Confidence            999999998776654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.76  E-value=0.0079  Score=62.52  Aligned_cols=229  Identities=12%  Similarity=0.075  Sum_probs=123.0

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--Eee---CCCccEeEEEEecC---CCEEEEEEC-C-----CcE
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYK---GHNYPVWDVQFNPQ---GHYFASSSH-D-----RTA  487 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~---~h~~~V~~l~~sp~---g~~l~s~s~-d-----g~v  487 (670)
                      ....+++|.|+|++++ +..+|.|++++  .+....  .+.   ........++|+|+   +..|.++.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            4567899999998555 45679999998  333211  111   12345789999998   445544433 2     578


Q ss_pred             EEEECCCCc-----ee-EEec---ccCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECCCC--------
Q 005913          488 RIWSMDRIQ-----PL-RIMA---GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG--------  537 (670)
Q Consensus       488 ~lwd~~~~~-----~~-~~~~---~~~~~v~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~--------  537 (670)
                      ..|+.....     .+ ..+.   +.......++|.|+|.+.++.+.             .|.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            888876431     11 1122   11123468999999976666432             145666665420        


Q ss_pred             -----cEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCe--------EEEEeCCC----------------CeeeEEeeC
Q 005913          538 -----ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT--------IMMWDLAS----------------GRCVTPLMG  587 (670)
Q Consensus       538 -----~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~--------I~iwDl~~----------------~~~~~~~~~  587 (670)
                           .....-.++. ....++|+| +|.++++-...+.        |.+..-..                ..++..+. 
T Consensus       188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-  265 (352)
T 2ism_A          188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-  265 (352)
T ss_dssp             TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred             CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence                 1111112332 356789999 6665555333222        33332111                01222332 


Q ss_pred             CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       588 h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      +......++| .+|.++++.-..+.|...++.........      ..   ...+......+..+++.|+|.++++..
T Consensus       266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~------~~---~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRV------LR---VETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEE------EE---EEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceee------cc---hheecccCCCeeEEEECCCCcEEEEEe
Confidence            2234567777 46766666666667777766543211000      00   001111235689999999998777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.72  E-value=0.025  Score=58.81  Aligned_cols=235  Identities=10%  Similarity=0.063  Sum_probs=129.3

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +...-.....++|.|||+++++ ..+|.|++++...  ......                       .............
T Consensus        24 va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G--~~~~~~-----------------------~~v~~~g~~g~~g   77 (354)
T 3a9g_A           24 VASDLEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG--KKLVAS-----------------------FDVANVGEAGLLG   77 (354)
T ss_dssp             EECSCSCEEEEEEEETTEEEEE-ETTTEEEEECSSC--EEEEEE-----------------------CCCCCSTTCSEEE
T ss_pred             EeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC--ceEeec-----------------------cceeecCCCceee
Confidence            3333456789999999985555 5679998886321  100000                       0001112356789


Q ss_pred             EEEcCC---CCEEEEEeC----C----CeEEEEeCCCCc-----e--e-EEeeC-CCccEeEEEEecCCCEEEEEEC---
Q 005913          427 ASFSPL---GDFILSSSA----D----TTIRLWSTKLNA-----N--L-VCYKG-HNYPVWDVQFNPQGHYFASSSH---  483 (670)
Q Consensus       427 l~~sp~---~~~L~s~s~----D----g~I~lwd~~~~~-----~--~-~~~~~-h~~~V~~l~~sp~g~~l~s~s~---  483 (670)
                      |+|+|+   +..|.++..    +    +.|..|+.....     .  + ..+.. .......+.|.|+|..+++.+.   
T Consensus        78 ia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~  157 (354)
T 3a9g_A           78 LALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD  157 (354)
T ss_dssp             EEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC
T ss_pred             EEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC
Confidence            999997   455544432    3    567777766431     1  1 11221 1123467999999987666432   


Q ss_pred             ----------CCcEEEEECCCC--------ceeEEecccCCCeeEEEEcC-CCCEEEEEEcCC---cEEEEECCC-----
Q 005913          484 ----------DRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDK---TVRLWDVSS-----  536 (670)
Q Consensus       484 ----------dg~v~lwd~~~~--------~~~~~~~~~~~~v~~v~~~p-~~~~l~tgs~dg---~I~iwd~~~-----  536 (670)
                                .|.|.-++.+..        .......++ .....++|+| +++.+++-....   .|.+.....     
T Consensus       158 ~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp  236 (354)
T 3a9g_A          158 PRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWP  236 (354)
T ss_dssp             GGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTT
T ss_pred             CccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCC
Confidence                      245655555432        111112233 3456899999 666555432221   233322100     


Q ss_pred             ---C--------cEEEEEecCCCCeEEEEEc-------CCCCEEEEEECCCeEEEEeCCCC-eee--EEee-CCCcceEE
Q 005913          537 ---G--------ECVRIFIGHRSMILSLAMS-------PDGRYMASGDEDGTIMMWDLASG-RCV--TPLM-GHTSCVWT  594 (670)
Q Consensus       537 ---~--------~~~~~~~~h~~~I~~l~~s-------p~g~~l~sg~~dg~I~iwDl~~~-~~~--~~~~-~h~~~V~s  594 (670)
                         +        .++..+.........++|.       .+|.++++.-..+.|...++... ...  ..+. +....+..
T Consensus       237 ~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~  316 (354)
T 3a9g_A          237 LATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRD  316 (354)
T ss_dssp             TCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEE
T ss_pred             cccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeE
Confidence               0        1222221122457788883       56777777777788999988753 222  2232 22457889


Q ss_pred             EEEcCCCCEEEEEE
Q 005913          595 LAYSCEGSLLASGS  608 (670)
Q Consensus       595 l~~s~~g~~l~sgs  608 (670)
                      +++.|||.++++..
T Consensus       317 v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          317 VVIDDDGGILISTS  330 (354)
T ss_dssp             EEECTTSCEEEEEC
T ss_pred             EEECCCCcEEEEEe
Confidence            99999998766654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.71  E-value=0.0077  Score=61.82  Aligned_cols=193  Identities=14%  Similarity=0.239  Sum_probs=121.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCC----CC---
Q 005913          362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL----GD---  434 (670)
Q Consensus       362 d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~---  434 (670)
                      ...+++.....+-+.+||+..                             +.+..+..  +.++.+..-|.    |+   
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G-----------------------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~d   87 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDG-----------------------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVD   87 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTS-----------------------------CEEEEECC--SCEEEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEcCCCCEEEEcCCC-----------------------------cEEEEccC--CCcccEEEecccccCCceEe
Confidence            445555555778899999953                             12222221  44555555442    22   


Q ss_pred             EEEEEe-C--CCeEEEEeCCC-CceeEEeeC------CC-ccEeEEEE--ecC-CC-EEEEEECCCcEEEEECC------
Q 005913          435 FILSSS-A--DTTIRLWSTKL-NANLVCYKG------HN-YPVWDVQF--NPQ-GH-YFASSSHDRTARIWSMD------  493 (670)
Q Consensus       435 ~L~s~s-~--Dg~I~lwd~~~-~~~~~~~~~------h~-~~V~~l~~--sp~-g~-~l~s~s~dg~v~lwd~~------  493 (670)
                      ++++.. .  +++|.+|++.. ...+..+..      .. ..+..+++  +|. +. |+++...+|.+..|++.      
T Consensus        88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~  167 (355)
T 3amr_A           88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY  167 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred             EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence            223333 3  57899997742 223433321      11 45666777  663 43 67888889999999883      


Q ss_pred             -CCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECC-----CCcEEEEEe-cCC-CCeEEEEE--cCCCC-EE
Q 005913          494 -RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----SGECVRIFI-GHR-SMILSLAM--SPDGR-YM  562 (670)
Q Consensus       494 -~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~-----~~~~~~~~~-~h~-~~I~~l~~--sp~g~-~l  562 (670)
                       +.+.++.+.. .+.+..|...+....|+.+-.+.-|..+|..     +++.+..+. ++- ..+..|++  .++|+ +|
T Consensus       168 ~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL  246 (355)
T 3amr_A          168 ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL  246 (355)
T ss_dssp             EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred             ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence             3355677664 3678889999999999999999778888865     344554442 222 36788888  45555 55


Q ss_pred             EEEE-CCCeEEEEeCC-CCeeeEEee
Q 005913          563 ASGD-EDGTIMMWDLA-SGRCVTPLM  586 (670)
Q Consensus       563 ~sg~-~dg~I~iwDl~-~~~~~~~~~  586 (670)
                      ++++ .++...+||.. +.+.+..+.
T Consensus       247 ivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          247 MASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            5555 67899999996 667777664

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.69  E-value=0.016  Score=62.61  Aligned_cols=195  Identities=13%  Similarity=0.119  Sum_probs=118.7

Q ss_pred             CEEEEEEcCC-CCEEEEEe-CCCeEEEEeCCCCceeEEeeCC---CccEeEEEE-------ecCCCEEEEEECCC-----
Q 005913          423 PVYSASFSPL-GDFILSSS-ADTTIRLWSTKLNANLVCYKGH---NYPVWDVQF-------NPQGHYFASSSHDR-----  485 (670)
Q Consensus       423 ~V~~l~~sp~-~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~-------sp~g~~l~s~s~dg-----  485 (670)
                      ....|+|+|. +..|..+. ..+.|++.|+..+.........   ......++|       +++|.+++++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 55455444 4467889998876655544332   234789999       99999777666543     


Q ss_pred             --cEEEEECCC-Ccee-----EEecccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECC-------CCcE----------
Q 005913          486 --TARIWSMDR-IQPL-----RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS-------SGEC----------  539 (670)
Q Consensus       486 --~v~lwd~~~-~~~~-----~~~~~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~-------~~~~----------  539 (670)
                        .+.+++... +...     ..+.. ......++++|+ +.++++-..++.|+.+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              255665333 1211     22322 234567888995 5555566677889999987       5543          


Q ss_pred             -E-EEEe-cCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeC--CCCeee--EEeeCC---C------------cceE-EE
Q 005913          540 -V-RIFI-GHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL--ASGRCV--TPLMGH---T------------SCVW-TL  595 (670)
Q Consensus       540 -~-~~~~-~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl--~~~~~~--~~~~~h---~------------~~V~-sl  595 (670)
                       . ..+. +.....+.|+|+|+|++|+.+ .....|+.+|.  .++...  ..+-+.   .            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             1 1122 223456899999999965555 46678888664  333220  112111   0            1234 45


Q ss_pred             EEc-------CCCCEEEEEECCCcEEEEeC
Q 005913          596 AYS-------CEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       596 ~~s-------~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      +..       ++|.++++=...+.|+.++.
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEeC
Confidence            554       56777777777889999983

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.65  E-value=0.057  Score=60.63  Aligned_cols=199  Identities=8%  Similarity=-0.050  Sum_probs=132.6

Q ss_pred             cCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEE-EEEECCCcEEEEECCCCceeE
Q 005913          422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      ..+.+++|++.+..|. +-..++.|+.+++........+.........+++.+.+..| ++-...+.|.+.+++......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            4678999999776665 44567899999988654444444333456788898765544 554566889999987655444


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeC
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDL  576 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl  576 (670)
                      .+.........++++|...+|+....  .+.|...++......... ..-.....|+++++++.|+.+. ..+.|..+|+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            44455567899999996666666542  567888887654433333 3445678999999877666664 5678999998


Q ss_pred             CCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      ..... ..+........++++.. +.++++-...+.|...|..++..
T Consensus       196 dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          196 LGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             TSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence            75443 23333334456788764 45555555678888888766543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.64  E-value=0.0042  Score=62.72  Aligned_cols=207  Identities=10%  Similarity=0.081  Sum_probs=105.5

Q ss_pred             CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCCc---eeEEec--ccCCCeeEEE
Q 005913          443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ---PLRIMA--GHLSDVDCVR  512 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~---~~~~~~--~~~~~v~~v~  512 (670)
                      ..+.+||+.+.+-...-..............++..++.|+.+     ..+.+||..+.+   -...-.  .......++.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~  110 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT  110 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence            368888887665332111111111111122356777777754     468899988765   322211  1111222222


Q ss_pred             EcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEeCCCCeee
Q 005913          513 WHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCV  582 (670)
Q Consensus       513 ~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-----g~I~iwDl~~~~~~  582 (670)
                      +  ++..++.|+.+     ..+.+||+.+.+-...-..........+..-++++++.|+.+     ..+.+||+.+.+-.
T Consensus       111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence            2  56677777654     368899988776443322111111111112267777777654     45889998876432


Q ss_pred             E--EeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913          583 T--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS  655 (670)
Q Consensus       583 ~--~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs  655 (670)
                      .  .+.........+.+  ++.+++.|+.+     ..+.+||+.+..             +..+..++........+  .
T Consensus       189 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------------W~~~~~~p~~r~~~~~~--~  251 (301)
T 2vpj_A          189 NVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-------------WTTVTSMTTPRCYVGAT--V  251 (301)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-------------EEEECCCSSCCBSCEEE--E
T ss_pred             eCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-------------EEECCCCCCcccceeEE--E
Confidence            2  22211111122222  67777887764     468888887643             12222222222222222  2


Q ss_pred             cCCcEEEEeeCCC
Q 005913          656 RRNLLFAAGALSK  668 (670)
Q Consensus       656 ~~~~~La~gs~dg  668 (670)
                      -++.+++.|+.++
T Consensus       252 ~~~~i~v~GG~~~  264 (301)
T 2vpj_A          252 LRGRLYAIAGYDG  264 (301)
T ss_dssp             ETTEEEEECCBCS
T ss_pred             ECCEEEEEcCcCC
Confidence            3778888887765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.64  E-value=0.027  Score=58.50  Aligned_cols=231  Identities=10%  Similarity=0.038  Sum_probs=127.1

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEe---eCCCccEeEEEEecC---CCEEEEEEC----C----C
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCY---KGHNYPVWDVQFNPQ---GHYFASSSH----D----R  485 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~-~~~~~---~~h~~~V~~l~~sp~---g~~l~s~s~----d----g  485 (670)
                      -....+++|.|+|+++ ++..+|.|++++. .+. .+..+   .........|+++|+   +..|.++..    +    +
T Consensus        28 l~~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYL-VTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEE-EEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEE-EEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            3567899999999844 4556699999974 343 11111   112345789999997   445544433    3    5


Q ss_pred             cEEEEECCCC--c---e--e-EEec-ccCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECCCC------
Q 005913          486 TARIWSMDRI--Q---P--L-RIMA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG------  537 (670)
Q Consensus       486 ~v~lwd~~~~--~---~--~-~~~~-~~~~~v~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~------  537 (670)
                      .|..|+....  .   .  + ..+. ........++|.|+|.++++.+.             .|.|.-++....      
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777776543  1   1  1 1122 11123467999999987666432             245666665422      


Q ss_pred             --cEEEEEecCCCCeEEEEEcC-CCCEEEEEECCC---eEEEEeCCC--------C--------eeeEEeeCCCcceEEE
Q 005913          538 --ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDG---TIMMWDLAS--------G--------RCVTPLMGHTSCVWTL  595 (670)
Q Consensus       538 --~~~~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg---~I~iwDl~~--------~--------~~~~~~~~h~~~V~sl  595 (670)
                        .....-.++.. ...++|+| +|.++++-...+   .|.+..-..        +        .++..+.........+
T Consensus       186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~  264 (354)
T 3a9g_A          186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA  264 (354)
T ss_dssp             STTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred             CCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence              11111234443 46899999 666555432221   243332110        0        1222331122456788


Q ss_pred             EEc-------CCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          596 AYS-------CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       596 ~~s-------~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      +|.       .+|.++++.-..+.|...++.........         .  ..+......+..+++.|+|.++++..
T Consensus       265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~---------~--~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKI---------S--TFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEE---------E--EECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccce---------e--eeccCCCCCeeEEEECCCCcEEEEEe
Confidence            883       56777777666778888877643211000         0  01122245689999999998777654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.64  E-value=0.029  Score=62.99  Aligned_cols=202  Identities=8%  Similarity=-0.015  Sum_probs=126.8

Q ss_pred             ccCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce-eEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEECCCCce
Q 005913          421 SGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd~~~~~~  497 (670)
                      -..+.+++|++.+..|..+. ..+.|..+++..... ...+...-.....+++.+.+.. +++-...+.|.+.+++....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            35678999999777666554 467899999875532 2333333356789999985554 45555678999999986554


Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMW  574 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iw  574 (670)
                      ...+.........++++|.+.+|+.+..  .+.|...++............-.....|++++++..|+.+. ..+.|..+
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            4444455667889999998666666553  46777777654433333333445678999999766666554 56789999


Q ss_pred             eCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       575 Dl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      |+..........+......++++..+ .++++-...+.|...|..++..
T Consensus       199 ~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          199 NLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             SSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             cCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            98754433322222223356777655 5555555678899999877654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.62  E-value=0.00042  Score=79.23  Aligned_cols=201  Identities=7%  Similarity=-0.062  Sum_probs=120.6

Q ss_pred             cCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCC----CceeEEeeCCCccEeEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 005913          422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI  495 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~-s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~lwd~~~~  495 (670)
                      ..+.+++|.+.+..|+.+ ...+.|+.+++..    ......+.........+++.+. +..+++-...+.|.+++++..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            445678999877766655 4567899999875    2222222212223456788754 444555456788999998866


Q ss_pred             ceeEEecccCCCeeEEEEcCCCCEEEEEEc--CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEE
Q 005913          496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIM  572 (670)
Q Consensus       496 ~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~  572 (670)
                      .....+.........++++|.+.+|+.+..  .+.|..+++............-.....|+|+|++..|+.+ +..+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            544444444456788999997665555442  2678888775333222222223346689999976655544 4667899


Q ss_pred             EEeCCCCeeeEEee--CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          573 MWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       573 iwDl~~~~~~~~~~--~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      .+|+........+.  .......+|++..+ .++++....+.|..++..++..
T Consensus       566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred             EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence            99986433222222  11123345666543 5566666678999998766543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.57  E-value=0.037  Score=57.42  Aligned_cols=242  Identities=12%  Similarity=0.080  Sum_probs=129.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      -..-..++|.|||+.|.++...|.|++++...... ..   ...                  .........+....++|+
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~-~~---~~~------------------~~~v~~~g~~g~~gia~~   74 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLS-AP---LSG------------------VPDVWAHGQGGLLDVVLA   74 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEEC-CC---CBS------------------CCCCCCSTTCSEEEEEEC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCcee-eE---ecC------------------CcccccCCCCCceeEEEC
Confidence            34578999999999334455789999887432100 00   000                  000111223567899999


Q ss_pred             CC---CCEEEEE-eC-------CCeEEEEeCCCCc-----eeEEeeC------CCccEeEEEEecCCCEEEEEEC-----
Q 005913          431 PL---GDFILSS-SA-------DTTIRLWSTKLNA-----NLVCYKG------HNYPVWDVQFNPQGHYFASSSH-----  483 (670)
Q Consensus       431 p~---~~~L~s~-s~-------Dg~I~lwd~~~~~-----~~~~~~~------h~~~V~~l~~sp~g~~l~s~s~-----  483 (670)
                      |+   +..|..+ +.       ...|..|++....     ....+..      .......+.|.|+|.++++.+.     
T Consensus        75 pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~  154 (353)
T 2g8s_A           75 PDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRP  154 (353)
T ss_dssp             TTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGG
T ss_pred             CCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCC
Confidence            96   4544433 22       2356666664331     1111211      1122467999999965555433     


Q ss_pred             --------CCcEEEEECCCCc------------eeEEec-ccCCCeeEEEEcCCCCEEEEEEcC--CcEEEEECCCC---
Q 005913          484 --------DRTARIWSMDRIQ------------PLRIMA-GHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSG---  537 (670)
Q Consensus       484 --------dg~v~lwd~~~~~------------~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~d--g~I~iwd~~~~---  537 (670)
                              .|.|.-++.+..-            ....+. ++ .....++|+|....|.++...  +.=.|.-+..+   
T Consensus       155 ~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ny  233 (353)
T 2g8s_A          155 TAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNY  233 (353)
T ss_dssp             GGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBC
T ss_pred             ccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcC
Confidence                    2456666765320            112222 33 456789999943344443322  11122222111   


Q ss_pred             ----------------------------cEEEEEecCCCCeEEEEEcC-------CCCEEEEEECCCeEEEEeCCCCeee
Q 005913          538 ----------------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       538 ----------------------------~~~~~~~~h~~~I~~l~~sp-------~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                                                  .++..+. +......++|..       +|.++++....+.|...++..++.+
T Consensus       234 Gwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~  312 (353)
T 2g8s_A          234 GWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT  312 (353)
T ss_dssp             CTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe
Confidence                                        1112222 234567788864       5777777777888888888766544


Q ss_pred             EE--e-eCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 005913          583 TP--L-MGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDV  618 (670)
Q Consensus       583 ~~--~-~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~  618 (670)
                      ..  + ......+..+++.|||.++++.. .+|  +||.+
T Consensus       313 ~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          313 EDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             EEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred             eeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence            32  2 12235789999999998666543 334  44443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.54  E-value=0.12  Score=54.18  Aligned_cols=233  Identities=12%  Similarity=0.170  Sum_probs=151.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE
Q 005913          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (670)
Q Consensus       357 l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L  436 (670)
                      .-.+|..+.+|.-. ...++|||+....                            .+..+.- ...|.-=.|-.+ +.|
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~----------------------------klks~~~-~e~VvfWkWis~-~~l  119 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHTM-TDDVTFWKWISL-NTV  119 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTE----------------------------EEEEEEC-SSCCCEEEEEET-TEE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhh----------------------------hhcceec-CCCceEEEecCC-CeE
Confidence            34566667676654 6789999998622                            2222222 234555566543 455


Q ss_pred             EEEeCCCeEEEEeCCCC-ceeEEeeCC----CccEeEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEeccc
Q 005913          437 LSSSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s-------~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      +..+ +..|+-|++... .+.+.+..|    +..|..-..+++.++++..|       -.|.+.+|+.++. ..+.+.||
T Consensus       120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh  197 (494)
T 1bpo_A          120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  197 (494)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred             EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence            5554 457999999743 456666655    34576777788888877654       2478899999875 45667788


Q ss_pred             CCCeeEEEEcCCC---CEEEEEEc---CCcEEEEECCCC---------cEEEEEecC---CCCeEEEEEcCCCCEEEEEE
Q 005913          505 LSDVDCVRWHINC---NYIATGSS---DKTVRLWDVSSG---------ECVRIFIGH---RSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       505 ~~~v~~v~~~p~~---~~l~tgs~---dg~I~iwd~~~~---------~~~~~~~~h---~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ......+...-+.   +.++.+..   .+.+++.++...         +.+..+...   .+-..++..|+.-..++.-+
T Consensus       198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT  277 (494)
T 1bpo_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  277 (494)
T ss_dssp             EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred             eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence            6655444433211   23444443   278999998532         112222222   33456888999888999999


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      .-|.|++||+.++.++..-+-...+|..-+.+....=++.....|.|.--.++...
T Consensus       278 K~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          278 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            99999999999999998877667777776666655556666688887777766543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.54  E-value=0.021  Score=64.13  Aligned_cols=207  Identities=9%  Similarity=0.020  Sum_probs=125.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      .-+....++|++.+..|... ...+.|..++++....                           ........-....+++
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---------------------------~~~v~~~~~~~P~GlA   90 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------VQNVVVSGLLSPDGLA   90 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---------------------------eEEEEeCCCCCcCeEE
Confidence            34457899999876666554 4467788888764110                           0111222225678999


Q ss_pred             EcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEecccC
Q 005913          429 FSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       429 ~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      +.+.+..| ++-...+.|.+.++............-....+|++.|.+.+++.+..  .+.|...+++............
T Consensus        91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~  170 (619)
T 3s94_A           91 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI  170 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred             EEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC
Confidence            99866654 45556789999999865444444344455778999997555555543  4567777777554444444455


Q ss_pred             CCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEE
Q 005913          506 SDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP  584 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~  584 (670)
                      .....+++++++..|+.+. ..+.|..+|+..........+.......|++..+ ..+++-...+.|...|..+++....
T Consensus       171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence            6788999998766665554 4578999988654333222212223346677655 4444444677899999877754433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.54  E-value=0.11  Score=53.56  Aligned_cols=239  Identities=15%  Similarity=0.114  Sum_probs=130.2

Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       346 t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .+...-..-+.++|.|||+++++--..|.|++++.......... .                     .........+...
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~-~---------------------~~~v~~~g~~Gll   83 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELG-E---------------------VPGVSPSGEGGLL   83 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E---------------------CTTCCCBTTBSEE
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeec-c---------------------cCceeecCCCCce
Confidence            44455567899999999998777755899988875421110000 0                     0001123456789


Q ss_pred             EEEEcCC---CCEEEEE---eCCCeEEEEeCCCC--------ceeEE---ee-CCCccEeEEEEecCCCEEEEEEC----
Q 005913          426 SASFSPL---GDFILSS---SADTTIRLWSTKLN--------ANLVC---YK-GHNYPVWDVQFNPQGHYFASSSH----  483 (670)
Q Consensus       426 ~l~~sp~---~~~L~s~---s~Dg~I~lwd~~~~--------~~~~~---~~-~h~~~V~~l~~sp~g~~l~s~s~----  483 (670)
                      .|+|+|+   +..|..+   ..++.|.-|.+...        .....   +. ........|.|.|+|.++++.+.    
T Consensus        84 Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~  163 (347)
T 3das_A           84 GIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT  163 (347)
T ss_dssp             EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG
T ss_pred             eeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC
Confidence            9999995   3444432   23455666665541        11111   21 11223467999999987777542    


Q ss_pred             ---------CCcEEEEECCCCc-------eeEEe-cccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCc-------
Q 005913          484 ---------DRTARIWSMDRIQ-------PLRIM-AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE-------  538 (670)
Q Consensus       484 ---------dg~v~lwd~~~~~-------~~~~~-~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~-------  538 (670)
                               .|.|.-.+.+..-       ...++ .+| .....++|+|+|.+.++-. .|+.-.|--+..|.       
T Consensus       164 ~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~  242 (347)
T 3das_A          164 GLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEA  242 (347)
T ss_dssp             GGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTC
T ss_pred             ccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcc
Confidence                     3455555554320       01122 244 4466899999877665532 23222222222221       


Q ss_pred             -----------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee----eEEeeCCCcceEEEEEcCCCCE
Q 005913          539 -----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSL  603 (670)
Q Consensus       539 -----------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~----~~~~~~h~~~V~sl~~s~~g~~  603 (670)
                                 ++..+..+......++|. +|..+...-..+.|....+.....    ...+.+..+.+..+...|||.+
T Consensus       243 ~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~l  321 (347)
T 3das_A          243 EGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKL  321 (347)
T ss_dssp             CSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEE
T ss_pred             cCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcE
Confidence                       122332222355677776 455666555566777777655432    1223344467899999999877


Q ss_pred             EEEEE
Q 005913          604 LASGS  608 (670)
Q Consensus       604 l~sgs  608 (670)
                      +++..
T Consensus       322 yv~td  326 (347)
T 3das_A          322 WLVTS  326 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            66654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.53  E-value=0.009  Score=60.77  Aligned_cols=159  Identities=9%  Similarity=0.056  Sum_probs=112.1

Q ss_pred             CCCccEeEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecccC-------CCeeEEEE---cCCCCEEEEEEc----
Q 005913          461 GHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHL-------SDVDCVRW---HINCNYIATGSS----  525 (670)
Q Consensus       461 ~h~~~V~~l~~sp~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~~-------~~v~~v~~---~p~~~~l~tgs~----  525 (670)
                      ....---++.|.+....|..++ ..++|..|+...+..........       ..+..+.|   .|++.++++...    
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3344455789988666666666 78999999998654443322221       13578999   688777776442    


Q ss_pred             ---------CCcEEEEECC---CCcEEEEEec-------------CCCCeEEEEEcCCCCEEEEEECC-CeEEEEeCCCC
Q 005913          526 ---------DKTVRLWDVS---SGECVRIFIG-------------HRSMILSLAMSPDGRYMASGDED-GTIMMWDLASG  579 (670)
Q Consensus       526 ---------dg~I~iwd~~---~~~~~~~~~~-------------h~~~I~~l~~sp~g~~l~sg~~d-g~I~iwDl~~~  579 (670)
                               +..|..||+.   +++.+....-             -......++..++|+..++++.. +.|..+|....
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                     6789999999   7877765531             11247899999999999999888 88888886533


Q ss_pred             eeeEEee-C-----CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          580 RCVTPLM-G-----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       580 ~~~~~~~-~-----h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                       .+..+. .     .....+.++++|+|..|++....|.+..+|+..
T Consensus       170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence             333221 1     122367899999999888887799999999874

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.51  E-value=0.008  Score=60.80  Aligned_cols=212  Identities=9%  Similarity=0.069  Sum_probs=109.3

Q ss_pred             EEEEEeC--CCeEEEEeCCCCceeEEe--eCCCccEeEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEeccc--
Q 005913          435 FILSSSA--DTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMAGH--  504 (670)
Q Consensus       435 ~L~s~s~--Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s~d----g~v~lwd~~~~~~~~~~~~~--  504 (670)
                      +++.|+.  ...+.+||..+.+-...-  .........+  .-++..++.|+.+    ..+.+||..+.+-...-...  
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            3445543  356888998876533221  1111111122  2366677777754    57888998876533322211  


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcEEEEEecCCCCe-EEEEEcCCCCEEEEEEC---------C
Q 005913          505 LSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSMI-LSLAMSPDGRYMASGDE---------D  568 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~I-~~l~~sp~g~~l~sg~~---------d  568 (670)
                      .....++.+  ++..++.|+.+      ..+.+||..+.+-...-....... .+++ .-++++++.|+.         -
T Consensus        92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCEESCTTTCEEC
T ss_pred             ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE-EECCEEEEECCCCCCCCccccc
Confidence            111222222  66777777765      468999998876443311111111 1122 225666666653         3


Q ss_pred             CeEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccccCCcccccccc
Q 005913          569 GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT  641 (670)
Q Consensus       569 g~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  641 (670)
                      ..+.+||+.+..-.  ..+......-..+.+  ++.+++.|+.+     ..+.+||..+..             +..+..
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------------W~~~~~  233 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------------WKMVSP  233 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE-------------EEECCC
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc-------------EEECCC
Confidence            45889999876432  222211111122222  66777777654     357888877642             222333


Q ss_pred             cCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          642 LPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       642 ~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ++........+.+  ++.+++.|+.++
T Consensus       234 ~p~~r~~~~~~~~--~~~i~v~GG~~~  258 (306)
T 3ii7_A          234 MPWKGVTVKCAAV--GSIVYVLAGFQG  258 (306)
T ss_dssp             CSCCBSCCEEEEE--TTEEEEEECBCS
T ss_pred             CCCCccceeEEEE--CCEEEEEeCcCC
Confidence            3333333333333  778888888664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.50  E-value=0.00047  Score=78.81  Aligned_cols=222  Identities=9%  Similarity=0.024  Sum_probs=126.1

Q ss_pred             CCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          351 HNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ...+..++|++++..|... ...+.|+.+++.+.....                        .....+.........|++
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~------------------------~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------------------SYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C------------------------CCCCBCCSCC--CCCEEC
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc------------------------ceEEEEeCCCCCcceEEE
Confidence            3456788999876666554 456788888876410000                        000000011122345677


Q ss_pred             cCCCC-EEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CC-CcEEEEECCCCceeEEecccCC
Q 005913          430 SPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAGHLS  506 (670)
Q Consensus       430 sp~~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-g~v~lwd~~~~~~~~~~~~~~~  506 (670)
                      .+.+. ++++-...+.|.++++........+.........+++.|.+.+|+.+. .. +.|..++++.......+.....
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~  540 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  540 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence            75444 444445678899999885544444433334467889998655544443 22 6788877765433333333345


Q ss_pred             CeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          507 DVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      ....|+|+|++..|+.+ +..+.|..+|+........+..  .......|++..+ .++++....+.|..+|..+|+.+.
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence            67789999876555544 4567899999864333322221  1123345566543 455555667889999988888777


Q ss_pred             EeeCCCcceEEEEE
Q 005913          584 PLMGHTSCVWTLAY  597 (670)
Q Consensus       584 ~~~~h~~~V~sl~~  597 (670)
                      .+.......++|++
T Consensus       620 ~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          620 LLAENLLSPEDMVL  633 (699)
T ss_dssp             CCCTTCSSCCCCCB
T ss_pred             EeecCCCCCcEEEE
Confidence            66543333344443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.49  E-value=0.0058  Score=61.64  Aligned_cols=182  Identities=10%  Similarity=0.056  Sum_probs=97.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCc---eeEEee--CCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCCc
Q 005913          432 LGDFILSSSAD-----TTIRLWSTKLNA---NLVCYK--GHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ  496 (670)
Q Consensus       432 ~~~~L~s~s~D-----g~I~lwd~~~~~---~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~  496 (670)
                      ++..++.|+.+     ..+.+||+.+..   -...-.  ........+.  .++..++.|+.+     ..+.+||..+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45666666654     468999988766   332211  1111111222  267777777654     368888987765


Q ss_pred             eeEEe--cccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEecCCC--CeEEEEEcCCCCEEEEEEC
Q 005913          497 PLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       497 ~~~~~--~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~--~I~~l~~sp~g~~l~sg~~  567 (670)
                      -...-  ........++.+  +++.++.|+.+     ..+.+||+.+.+-...-.....  ...++.+  ++++++.|+.
T Consensus       140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  215 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF  215 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence            33322  111112222222  66777777654     4689999987755433111111  1122222  5677777775


Q ss_pred             C-----CeEEEEeCCCCeeeE--EeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913          568 D-----GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS  621 (670)
Q Consensus       568 d-----g~I~iwDl~~~~~~~--~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~  621 (670)
                      +     ..+.+||+.+.+-..  .+.........+.+  ++.+++.|+.+     ..|.+||..+.
T Consensus       216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            4     468999998765332  22211111222222  67778888765     35677887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.43  E-value=0.011  Score=59.69  Aligned_cols=204  Identities=16%  Similarity=0.164  Sum_probs=102.5

Q ss_pred             CeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCCceeEEecc--cCCCeeEEEE
Q 005913          443 TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPLRIMAG--HLSDVDCVRW  513 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~~~~~~~~~--~~~~v~~v~~  513 (670)
                      ..+..||+.+..-...-.  ...... +++ .-++..++.|+.+     ..+.+||..+.+-...-..  ......++. 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRA-GMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccc-eEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence            357888887665332211  111111 122 2266777777754     3588888877643322111  111122222 


Q ss_pred             cCCCCEEEEEEcCC-----cEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEECC-------CeEEEEeCCCCe
Q 005913          514 HINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED-------GTIMMWDLASGR  580 (670)
Q Consensus       514 ~p~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~sg~~d-------g~I~iwDl~~~~  580 (670)
                       .++..++.|+.++     .+.+||+.+.+-...-...... -.+++. -+++.++.|+.+       ..+.+||+.+.+
T Consensus       107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence             2667777777653     5788998877644331111111 112222 256666666542       458899988764


Q ss_pred             ee--EEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913          581 CV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ  653 (670)
Q Consensus       581 ~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  653 (670)
                      -.  ..+.........+.+  ++.+++.|+.+     ..+.+||..+..             +..+..++.....-.  .
T Consensus       185 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------------W~~~~~~~~~r~~~~--~  247 (302)
T 2xn4_A          185 WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA-------------WRQVADMNMCRRNAG--V  247 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE-------------EEEECCCSSCCBSCE--E
T ss_pred             EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC-------------EeeCCCCCCccccCe--E
Confidence            32  222221112222222  67788888765     368888877642             122222222221112  2


Q ss_pred             EecCCcEEEEeeCCC
Q 005913          654 FSRRNLLFAAGALSK  668 (670)
Q Consensus       654 fs~~~~~La~gs~dg  668 (670)
                      ..-++.+++.|+.++
T Consensus       248 ~~~~~~i~v~GG~~~  262 (302)
T 2xn4_A          248 CAVNGLLYVVGGDDG  262 (302)
T ss_dssp             EEETTEEEEECCBCS
T ss_pred             EEECCEEEEECCcCC
Confidence            223778888888765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.42  E-value=0.025  Score=58.57  Aligned_cols=191  Identities=15%  Similarity=0.175  Sum_probs=114.8

Q ss_pred             CEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCC--ce-eEEeeC-----CCccEeEEEEec--CCC-EEE
Q 005913          423 PVYSASFSPLGDFILSSS------------ADTTIRLWSTKLN--AN-LVCYKG-----HNYPVWDVQFNP--QGH-YFA  479 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s------------~Dg~I~lwd~~~~--~~-~~~~~~-----h~~~V~~l~~sp--~g~-~l~  479 (670)
                      ..-.+...|+|..+++++            .+|.|.++|..+.  +. ...+.+     .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            345566778776555542            6899999998743  21 112222     223566777766  453 455


Q ss_pred             EEEC---CCcEEEEECCCCc-e---eEEecc-cCCCeeEEEEcCCCCEEEEEEc-----------------CCcEEEEEC
Q 005913          480 SSSH---DRTARIWSMDRIQ-P---LRIMAG-HLSDVDCVRWHINCNYIATGSS-----------------DKTVRLWDV  534 (670)
Q Consensus       480 s~s~---dg~v~lwd~~~~~-~---~~~~~~-~~~~v~~v~~~p~~~~l~tgs~-----------------dg~I~iwd~  534 (670)
                      ++.+   +.++.+|+++... .   +..+.+ .....+.+++.++|.+.++...                 .|.|+.+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            5533   4577888775432 2   222332 2345789999999987777541                 245555554


Q ss_pred             CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCC-Cee--eEEeeCCCcceEEEEEcC-CCCEEEEEEC
Q 005913          535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYSC-EGSLLASGSA  609 (670)
Q Consensus       535 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~-~~~--~~~~~~h~~~V~sl~~s~-~g~~l~sgs~  609 (670)
                        ++.. .+...-.....++||||++.|+.+. ..+.|..||+.. +..  ...+ ...+..-.+++.+ +|++.+++..
T Consensus       211 --~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 --NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             --TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             --CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence              3332 3333334578999999998887765 568999999863 322  1223 2245677899999 5998887764


Q ss_pred             C-CcEEEEe
Q 005913          610 D-CTVKLWD  617 (670)
Q Consensus       610 D-g~I~iwd  617 (670)
                      + +.|..|+
T Consensus       287 ~g~~v~~~~  295 (355)
T 3sre_A          287 NGMRIFFYD  295 (355)
T ss_dssp             CHHHHHSCC
T ss_pred             CceEEEEEC
Confidence            4 3444443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.36  E-value=0.11  Score=58.30  Aligned_cols=203  Identities=7%  Similarity=-0.043  Sum_probs=129.3

Q ss_pred             CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          352 NGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      .....++|++.+..|. +-..++.|..++++....                            ............++++.
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~----------------------------~~v~~~g~~~P~GlAvD   88 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL----------------------------EHVVEFGLDYPEGMAVD   88 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------------EEEECSSCSCCCEEEEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc----------------------------EEEEeCCCCCcceEEEE
Confidence            3578999998665555 555678888888764211                            01111112345678888


Q ss_pred             CCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecccCCC
Q 005913          431 PLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSD  507 (670)
Q Consensus       431 p~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~dg~v~lwd~~~~~~~~~~~~~~~~  507 (670)
                      +.+..| ++-...+.|.+.++............-....++++.|...+|+...  ..+.|...+++........ .....
T Consensus        89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~  167 (628)
T 4a0p_A           89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGR  167 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSS
T ss_pred             eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCC
Confidence            766655 4555678899999875544333433444568999999554555544  2567888888765544444 35567


Q ss_pred             eeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      ...+++++++..|+.+. ..+.|..+|+..... ..+.........+++.. +..+++-...+.|...|..+|+....+
T Consensus       168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             cceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            88999999877666654 457899999875444 34444444566788765 444555556789999998777544433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.34  E-value=0.023  Score=57.39  Aligned_cols=185  Identities=9%  Similarity=0.032  Sum_probs=97.8

Q ss_pred             CCCEEEEEeCC----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC------CcEEEEECCCCceeEEe
Q 005913          432 LGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLRIM  501 (670)
Q Consensus       432 ~~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d------g~v~lwd~~~~~~~~~~  501 (670)
                      ++..++.|+.+    ..+.+||..+.+-...-.............-++..++.|+.+      ..+.+||..+.+-...-
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            45666677654    578889988765433222111111111112267777777765      46889998876533321


Q ss_pred             ccc--CCCeeEEEEcCCCCEEEEEEc---------CCcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEECC-
Q 005913          502 AGH--LSDVDCVRWHINCNYIATGSS---------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED-  568 (670)
Q Consensus       502 ~~~--~~~v~~v~~~p~~~~l~tgs~---------dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~sg~~d-  568 (670)
                      ...  .....++.  .++..++.|+.         -..+.+||+.+.+-...-...... -.+++.. ++++++.|+.+ 
T Consensus       135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~  211 (306)
T 3ii7_A          135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNG  211 (306)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEET
T ss_pred             CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCC
Confidence            111  11122222  25666666653         345889999887544332111111 1122222 56677776643 


Q ss_pred             ----CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913          569 ----GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS  621 (670)
Q Consensus       569 ----g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~  621 (670)
                          ..+.+||+.+.+-  +..+.........+.+  ++.+++.|+.+     ..+.+||..+.
T Consensus       212 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             TEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence                4689999987642  2222211122223333  67788888854     46788887764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.33  E-value=0.014  Score=58.90  Aligned_cols=182  Identities=15%  Similarity=0.139  Sum_probs=95.9

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEECCC-----cEEEEECCCCceeE
Q 005913          432 LGDFILSSSAD-----TTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLR  499 (670)
Q Consensus       432 ~~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~dg-----~v~lwd~~~~~~~~  499 (670)
                      ++..++.|+.+     ..+.+||..+.+-...-..  .......+.  -++..++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            45666666644     3588899887654332211  111111122  2677777787553     57788887654333


Q ss_pred             Eec--ccCCCeeEEEEcCCCCEEEEEEcC-------CcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEECC
Q 005913          500 IMA--GHLSDVDCVRWHINCNYIATGSSD-------KTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       500 ~~~--~~~~~v~~v~~~p~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                      .-.  .......++.  -++..++.|+.+       ..+.+||+.+.+-...-...  .....++.+  ++++++.|+.+
T Consensus       139 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  214 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD  214 (302)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred             cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence            211  1111122222  256666666543       35889999877544321111  111122222  56777777754


Q ss_pred             -----CeEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECCC-----cEEEEeCCCC
Q 005913          569 -----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTS  621 (670)
Q Consensus       569 -----g~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~~  621 (670)
                           ..+.+||+.+.+-.  ..+.........+.  .++.+++.|+.++     .|.+||..+.
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence                 46899999876432  22221111111222  2677888887653     4888888764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.23  E-value=0.051  Score=56.20  Aligned_cols=151  Identities=12%  Similarity=0.200  Sum_probs=93.5

Q ss_pred             cCEEEEEEcC--CCC-EEEEEe-C--CCeEEEEeCCCCce----eEEeeCC-CccEeEEEEecCCCEEEEEEC-------
Q 005913          422 GPVYSASFSP--LGD-FILSSS-A--DTTIRLWSTKLNAN----LVCYKGH-NYPVWDVQFNPQGHYFASSSH-------  483 (670)
Q Consensus       422 ~~V~~l~~sp--~~~-~L~s~s-~--Dg~I~lwd~~~~~~----~~~~~~h-~~~V~~l~~sp~g~~l~s~s~-------  483 (670)
                      .....+.+.+  ++. +|+++. .  +.+|.+|++.....    +..+.+. -....++.+.++|.++++...       
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            4556677655  354 444442 2  56788888765422    2233332 235789999999987777541       


Q ss_pred             ----------CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCC-CcE--EEEEecCCCC
Q 005913          484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSM  549 (670)
Q Consensus       484 ----------dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~-~~~--~~~~~~h~~~  549 (670)
                                .|.|..++.  ++ ++.+.......+.++|+|+++.++++. ..+.|+.|++.. +..  .+.+ ...+.
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~  267 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTL  267 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSE
T ss_pred             ccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCC
Confidence                      134444444  33 333444456778999999998887765 468899999863 332  2344 33466


Q ss_pred             eEEEEEcC-CCCEEEEEECC-CeEEEEeC
Q 005913          550 ILSLAMSP-DGRYMASGDED-GTIMMWDL  576 (670)
Q Consensus       550 I~~l~~sp-~g~~l~sg~~d-g~I~iwDl  576 (670)
                      ...+++.+ +|++.+++..+ +.|..||.
T Consensus       268 PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             CceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            78899999 59888777644 34555554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.20  E-value=0.52  Score=54.00  Aligned_cols=231  Identities=11%  Similarity=0.106  Sum_probs=135.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      ++.|+|+.-..+|. |-.|+.+| +..||-....  .. .                ..  .      ......|.++.-.
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~--~~-~----------------~~--~------~~~~~~i~~i~~d   71 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ--QH-F----------------TY--G------ENNNTRIYCGVII   71 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE--EC-S----------------CT--T------STTSSCEEEEEEE
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceE--EE-E----------------cc--C------CCCCceEEEEEEc
Confidence            56799999988875 55677777 4456622100  00 0                00  0      0123568888777


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-----ccC
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-----GHL  505 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~-----~~~  505 (670)
                      .++ .|..|+.+| +..||..+.............|+++.. .+| .+..++.+ .+..++..+.+.. .+.     ...
T Consensus        72 ~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~  145 (758)
T 3ott_A           72 DNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPN  145 (758)
T ss_dssp             TTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSC
T ss_pred             CCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCC
Confidence            665 566666665 789998765332211112234776654 355 56666665 6888998765433 231     123


Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h-----~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      ..|.++....+++..+ |+.+ -|..+|..+++........     ...|.++...+++..|..|+. +-+..+|..+++
T Consensus       146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~  222 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ  222 (758)
T ss_dssp             SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred             CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence            4688888777776554 5544 4778888776543221111     124888888887775555654 458889987765


Q ss_pred             eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      ...........|.++....+|.+.+. +.+ -+.+++..+.
T Consensus       223 ~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~  261 (758)
T 3ott_A          223 IKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTT  261 (758)
T ss_dssp             EEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTS
T ss_pred             EEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCC
Confidence            43211112345888888888876554 444 5778886553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.18  E-value=0.016  Score=58.72  Aligned_cols=214  Identities=12%  Similarity=0.033  Sum_probs=108.2

Q ss_pred             CCCEEEEEeC----CCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEEC----C-----CcEEEEECCCCc
Q 005913          432 LGDFILSSSA----DTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSH----D-----RTARIWSMDRIQ  496 (670)
Q Consensus       432 ~~~~L~s~s~----Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~----d-----g~v~lwd~~~~~  496 (670)
                      ++..++.|+.    -..+.+||..+.+-...-.  ...... +++ .-++..++.|+.    +     ..+.+||..+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            3455566653    2358888887665332211  111111 122 226667777765    2     468888887654


Q ss_pred             eeEEe--cccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEEC
Q 005913          497 PLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       497 ~~~~~--~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      -...-  ........++.+  ++..++.|+.+     ..+.+||..+.+-...-...  ...-.++.+  ++.+++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            32221  111112222332  66677776643     36889998876543321111  111122222  5677777765


Q ss_pred             C-----CeEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCccccccccccCCcc
Q 005913          568 D-----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTKVLKTEEKSGTNR  635 (670)
Q Consensus       568 d-----g~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~  635 (670)
                      +     ..+.+||+.+.+-.  ..+.........+.+  ++.+++.|+.+     ..+.+||+.+..             
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------------  242 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET-------------  242 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-------------
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc-------------
Confidence            4     45899998776432  222211112222233  67778888765     458888887642             


Q ss_pred             cccccccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          636 LRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       636 ~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      +..+..++........+.  -++.+++.|+.++
T Consensus       243 W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~  273 (308)
T 1zgk_A          243 WTFVAPMKHRRSALGITV--HQGRIYVLGGYDG  273 (308)
T ss_dssp             EEECCCCSSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred             EEECCCCCCCccceEEEE--ECCEEEEEcCcCC
Confidence            222222332222222222  3678888888664

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.13  E-value=0.31  Score=50.13  Aligned_cols=240  Identities=14%  Similarity=0.114  Sum_probs=130.2

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--e----eCCCccEeEEEEecC----CCEEEEEE
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--Y----KGHNYPVWDVQFNPQ----GHYFASSS  482 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~--~----~~h~~~V~~l~~sp~----g~~l~s~s  482 (670)
                      ....+...-...+.|+|.|+|+++++--..|.|++++...+.....  +    .........|+++|+    +..+++-+
T Consensus        23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            3344444456778999999999777665589999998765543221  1    123456789999995    44333322


Q ss_pred             --CCCcEEEEECCCC--------ceeEE---ec-ccCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECC
Q 005913          483 --HDRTARIWSMDRI--------QPLRI---MA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVS  535 (670)
Q Consensus       483 --~dg~v~lwd~~~~--------~~~~~---~~-~~~~~v~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~  535 (670)
                        .++.|.-|.....        .....   +. ........++|.|+|.+.++.+.             .|.|.-.+..
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence              3456666665541        11111   21 11123467999999987776442             3455555554


Q ss_pred             CC--------cEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCe------------------eeEEeeCC
Q 005913          536 SG--------ECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGR------------------CVTPLMGH  588 (670)
Q Consensus       536 ~~--------~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~------------------~~~~~~~h  588 (670)
                      ..        .....-.+|.. ...++|+|+|.+.++= +.|+.=.|--+..|.                  ++..+..+
T Consensus       183 G~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~  261 (347)
T 3das_A          183 GEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD  261 (347)
T ss_dssp             SSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred             CCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence            22        11111235543 5689999988766553 223222222222211                  12222222


Q ss_pred             CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       589 ~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      ......++|. +|.+++..-..+.|....+.......           .....+......+..|++.|+|.++++-.
T Consensus       262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~-----------~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA-----------DPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS-----------CCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCcceEEE-cCceeeccccCCEEEEEEecCCceec-----------ceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            2355677776 45556655555566555554432110           00112223456799999999998776643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.12  E-value=0.29  Score=52.49  Aligned_cols=114  Identities=10%  Similarity=0.067  Sum_probs=60.8

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      ..-...+.++|.|||+++++-...+.|++++........... ..                   .........+....|+
T Consensus        24 ~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~-~~-------------------~~~~~~~g~~Gllgia   83 (454)
T 1cru_A           24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQ-VP-------------------EIVNDADGQNGLLGFA   83 (454)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CT-------------------TCCCCTTSSCSEEEEE
T ss_pred             CCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEec-CC-------------------ccccccCCCCceeEEE
Confidence            334467899999999977776444568777643211100000 00                   0000001246788999


Q ss_pred             EcCC---CCEEEEEeC-------------CCeEEEEeCCCCc-----eeEEe---e-CCCccEeEEEEecCCCEEEEEE
Q 005913          429 FSPL---GDFILSSSA-------------DTTIRLWSTKLNA-----NLVCY---K-GHNYPVWDVQFNPQGHYFASSS  482 (670)
Q Consensus       429 ~sp~---~~~L~s~s~-------------Dg~I~lwd~~~~~-----~~~~~---~-~h~~~V~~l~~sp~g~~l~s~s  482 (670)
                      |+|+   +..|..+..             ...|.-|+.....     ....+   . ........+.|.|+|.++++.+
T Consensus        84 ~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           84 FHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             ECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            9995   555544332             1345555543221     11112   1 1123468899999998777655

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.09  E-value=0.081  Score=54.79  Aligned_cols=229  Identities=13%  Similarity=0.084  Sum_probs=121.4

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-------eeCCCccEeEEEEecC---CCEEEEE-EC------
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-------YKGHNYPVWDVQFNPQ---GHYFASS-SH------  483 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~-------~~~h~~~V~~l~~sp~---g~~l~s~-s~------  483 (670)
                      -.....|+|.|+|+.|+++...|.|++++.. +.....       +.........++++|+   +.+|.++ +.      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3456899999999944455678999999854 221111       1112335688999995   4444443 32      


Q ss_pred             -CCcEEEEECCCC--c--eeE-Eecc------cCCCeeEEEEcCCCCEEEEEEc-------------CCcEEEEECCCCc
Q 005913          484 -DRTARIWSMDRI--Q--PLR-IMAG------HLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSGE  538 (670)
Q Consensus       484 -dg~v~lwd~~~~--~--~~~-~~~~------~~~~v~~v~~~p~~~~l~tgs~-------------dg~I~iwd~~~~~  538 (670)
                       ...|..|+++..  .  ... .+..      .......++|.|+|.+.++.+.             .|.|.-++....-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             235666666432  1  111 1211      1112467999999965555433             2457677764320


Q ss_pred             ------------EEEEE-ecCCCCeEEEEEcC-CCCEEEEEE-CCCeEEEEeCCCC------------------------
Q 005913          539 ------------CVRIF-IGHRSMILSLAMSP-DGRYMASGD-EDGTIMMWDLASG------------------------  579 (670)
Q Consensus       539 ------------~~~~~-~~h~~~I~~l~~sp-~g~~l~sg~-~dg~I~iwDl~~~------------------------  579 (670)
                                  ....+ .++. ....++|+| +|.++++-. .++.=.|.-+..+                        
T Consensus       176 p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                        11112 2443 367899999 565544422 1111122211111                        


Q ss_pred             -------eeeEEeeCCCcceEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCC
Q 005913          580 -------RCVTPLMGHTSCVWTLAYSC-------EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK  645 (670)
Q Consensus       580 -------~~~~~~~~h~~~V~sl~~s~-------~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  645 (670)
                             .++..+. +...+..+.|..       +|.++++.-..+.|...++..+.... .        ..   .+...
T Consensus       255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~-~--------~~---~~~~~  321 (353)
T 2g8s_A          255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTE-D--------GR---ILTDR  321 (353)
T ss_dssp             SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE-E--------EE---ESGGG
T ss_pred             CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEee-e--------EE---cccCC
Confidence                   1111222 223566777753       46677776677777777776432110 0        00   11122


Q ss_pred             CCCeEEEEEecCCcEEEEe
Q 005913          646 STPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       646 ~~~V~~l~fs~~~~~La~g  664 (670)
                      ...+..+++.|+|.++++.
T Consensus       322 ~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          322 GQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CCCEEEEEECTTSCEEEEE
T ss_pred             CCceeEEEECCCCcEEEEE
Confidence            3478999999999877653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.05  E-value=0.068  Score=55.99  Aligned_cols=140  Identities=16%  Similarity=0.147  Sum_probs=93.2

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeccc----CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc-----------
Q 005913          474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-----------  538 (670)
Q Consensus       474 ~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~----~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~-----------  538 (670)
                      +|..++++- ++.||.-++......+.+...    ...|..+..+|+|++||..+ +..|.|..+..+.           
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            444444432 356666666533344444432    33688899999999999985 5578888876321           


Q ss_pred             -EEEEEec------CCCCeEEEEEcC---CCCEEEEEECCCeEEEEeCCCCe--eeEEee---------CCCcceEEEEE
Q 005913          539 -CVRIFIG------HRSMILSLAMSP---DGRYMASGDEDGTIMMWDLASGR--CVTPLM---------GHTSCVWTLAY  597 (670)
Q Consensus       539 -~~~~~~~------h~~~I~~l~~sp---~g~~l~sg~~dg~I~iwDl~~~~--~~~~~~---------~h~~~V~sl~~  597 (670)
                       ..+.+.-      ...+|..+.|+|   .|..|++-..|+.|++||+....  +. .+.         .....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence             1233332      246799999999   46699999999999999998532  22 221         22356889999


Q ss_pred             cCCCCEEEEEE--CCCcEEEE
Q 005913          598 SCEGSLLASGS--ADCTVKLW  616 (670)
Q Consensus       598 s~~g~~l~sgs--~Dg~I~iw  616 (670)
                      +.++-.|...+  ..|.|+-.
T Consensus       188 g~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEEE
Confidence            99887777755  77877644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.01  E-value=0.45  Score=49.94  Aligned_cols=230  Identities=11%  Similarity=0.167  Sum_probs=144.9

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecccC-
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHL-  505 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~-  505 (670)
                      -.+|..+.++.-. ..++.++|+++...+..+.-. .+|.--.|-.+. .++..+ +..|+.|+++. ..|...|..|. 
T Consensus        72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~  147 (494)
T 1bpo_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS  147 (494)
T ss_dssp             EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGG
T ss_pred             eeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchh
Confidence            4667777666555 679999999999888887753 356666776554 444443 46899999974 46777777653 


Q ss_pred             ---CCeeEEEEcCCCCEEEEEE-------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCC---CCEEEEEEC---CC
Q 005913          506 ---SDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD---GRYMASGDE---DG  569 (670)
Q Consensus       506 ---~~v~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~---g~~l~sg~~---dg  569 (670)
                         ..|.....+++.++++..+       -.|.+.+|.+..+.. +.+.||.+....+.+.-+   ...++.+..   .+
T Consensus       148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~  226 (494)
T 1bpo_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (494)
T ss_dssp             GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred             cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence               3566777789999887644       246788999875544 456777655444433211   123333433   27


Q ss_pred             eEEEEeCCCC---e-----eeEEe-e---CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccc
Q 005913          570 TIMMWDLASG---R-----CVTPL-M---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR  637 (670)
Q Consensus       570 ~I~iwDl~~~---~-----~~~~~-~---~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  637 (670)
                      .++|.++...   .     ....+ .   .-..-..++..|+.-.++..-+.-|.|++||+.++..+....-....   -
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~---i  303 (494)
T 1bpo_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET---I  303 (494)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---E
T ss_pred             EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc---e
Confidence            8999998542   1     11111 1   12344567888988889999999999999999999876543221111   0


Q ss_pred             cccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          638 SLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       638 ~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      .+.......+.|.++  ++.|++|.+.-.+
T Consensus       304 F~t~~~~~~~Gi~~V--nr~GqVl~v~v~e  331 (494)
T 1bpo_A          304 FVTAPHEATAGIIGV--NRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEEEETTTTEEEEE--ETTCEEEEEEECT
T ss_pred             EEecccCCCCcEEEE--ccCceEEEEEEcc
Confidence            112222333445444  5778777766544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.00  E-value=0.05  Score=55.11  Aligned_cols=186  Identities=9%  Similarity=0.038  Sum_probs=94.0

Q ss_pred             cCCCCEEEEEeC----C-------CeEEEEeCCCCceeEEeeCCCccE--eEEEEecCCCEEEEEECC--------CcEE
Q 005913          430 SPLGDFILSSSA----D-------TTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHD--------RTAR  488 (670)
Q Consensus       430 sp~~~~L~s~s~----D-------g~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~g~~l~s~s~d--------g~v~  488 (670)
                      ..++..++.|+.    +       ..+..||..+.+-... ..-..+-  .+++.. ++..++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEE
Confidence            346777777763    1       1277888877653221 1111111  112222 56667777632        4588


Q ss_pred             EEECCCCceeEEe--cccCCCeeEEEEcCCCCEEEEEEc-C-----CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 005913          489 IWSMDRIQPLRIM--AGHLSDVDCVRWHINCNYIATGSS-D-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR  560 (670)
Q Consensus       489 lwd~~~~~~~~~~--~~~~~~v~~v~~~p~~~~l~tgs~-d-----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~  560 (670)
                      +||..+.+-...-  ........++.  .+++.++.|+. +     ..+.+||+.+.+-...-..........+..-+++
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~  198 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGR  198 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE
T ss_pred             EECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCE
Confidence            8998775422211  11111122222  35667777765 2     4689999987654332111111111111122677


Q ss_pred             EEEEEECCC-----eEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECCC--------------cEEEEeCC
Q 005913          561 YMASGDEDG-----TIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSADC--------------TVKLWDVT  619 (670)
Q Consensus       561 ~l~sg~~dg-----~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--------------~I~iwd~~  619 (670)
                      +++.|+.++     .+.+||+.+.+-.  ..+.........+.+  ++.+++.|+.++              .|.+||+.
T Consensus       199 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  276 (315)
T 4asc_A          199 IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEE  276 (315)
T ss_dssp             EEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred             EEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCC
Confidence            777777654     5889999876432  222211122222222  667888887642              36677776


Q ss_pred             CC
Q 005913          620 TS  621 (670)
Q Consensus       620 ~~  621 (670)
                      +.
T Consensus       277 ~~  278 (315)
T 4asc_A          277 EK  278 (315)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.98  E-value=0.33  Score=52.03  Aligned_cols=104  Identities=11%  Similarity=0.084  Sum_probs=61.1

Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EeeC------CCccEeEEEEecC---CCEEEEEEC------
Q 005913          421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKG------HNYPVWDVQFNPQ---GHYFASSSH------  483 (670)
Q Consensus       421 ~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~~------h~~~V~~l~~sp~---g~~l~s~s~------  483 (670)
                      -....+|+|.|+|+++++-...+.|++++..++....  .+..      .......|+|+|+   +.+|.++..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4466799999999977765444578888865444322  2211      2345679999995   444444432      


Q ss_pred             -------CCcEEEEECCCC--c---eeEE---ec-ccCCCeeEEEEcCCCCEEEEEE
Q 005913          484 -------DRTARIWSMDRI--Q---PLRI---MA-GHLSDVDCVRWHINCNYIATGS  524 (670)
Q Consensus       484 -------dg~v~lwd~~~~--~---~~~~---~~-~~~~~v~~v~~~p~~~~l~tgs  524 (670)
                             ...|.-|+.+..  .   ....   +. ........++|.|+|++.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   234555554321  1   1111   22 1123468899999998777654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.97  E-value=0.029  Score=58.71  Aligned_cols=145  Identities=14%  Similarity=0.122  Sum_probs=95.0

Q ss_pred             cCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe---------
Q 005913          514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR---------  580 (670)
Q Consensus       514 ~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h----~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~---------  580 (670)
                      +.+|.-++++ .++.||..++..+..-+.+...    -..|..+..||+|.+||..+. ..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            3466666665 3578888888755545555433    236888999999999999865 578998887332         


Q ss_pred             ---eeEEeeC------CCcceEEEEEcC---CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913          581 ---CVTPLMG------HTSCVWTLAYSC---EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP  648 (670)
Q Consensus       581 ---~~~~~~~------h~~~V~sl~~s~---~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (670)
                         ..+.+.-      ...+|..+.|+|   .+..|++-..|++|++||+........ ..+    .......+......
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~----k~~~~fg~d~~~~e  181 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLN----KPNNSFGLDARVND  181 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EES----CCCSEEESCSSCCC
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chh----ccccccCCCcccce
Confidence               1112221      246799999999   456899999999999999987332111 000    00001122333467


Q ss_pred             eEEEEEecCCcEEEEee
Q 005913          649 VYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       649 V~~l~fs~~~~~La~gs  665 (670)
                      |.+++|+.++..|.+.+
T Consensus       182 v~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          182 ITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             EEEEEECTTSSCEEEEE
T ss_pred             EEEEEEcCCCcEEEEEe
Confidence            89999999887776644

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.89  E-value=0.079  Score=53.61  Aligned_cols=180  Identities=9%  Similarity=0.020  Sum_probs=91.3

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEE-eeCCCccEeEEEEecCCCEEEEEEC----C-------CcEEEEECCCCceeEE--e
Q 005913          436 ILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSH----D-------RTARIWSMDRIQPLRI--M  501 (670)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~g~~l~s~s~----d-------g~v~lwd~~~~~~~~~--~  501 (670)
                      ++.|+  ..+..||..+.+-... ...............++..++.|+.    +       ..+..||..+.+-...  +
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            34454  5689999988765431 1111111222223347777888873    1       1267788876543221  1


Q ss_pred             cccCCCeeEEEEcCCCCEEEEEEcC--------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC-C----
Q 005913          502 AGHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-D----  568 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~~l~tgs~d--------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~-d----  568 (670)
                      ........++.+  ++..++.|+.+        ..+.+||..+.+-...-..........+...+++.++.|+. +    
T Consensus        86 p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  163 (315)
T 4asc_A           86 PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC  163 (315)
T ss_dssp             SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred             CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence            111111122222  56666666632        46899999877543221111111111122235667777765 2    


Q ss_pred             -CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECCC-----cEEEEeCCCC
Q 005913          569 -GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTS  621 (670)
Q Consensus       569 -g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~~  621 (670)
                       ..+.+||..+.+-  +..+......-..+.+  ++.+++.|+.++     .+.+||..+.
T Consensus       164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          164 LNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             cceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence             4689999887642  2222211111122222  677888887654     4778887664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.84  E-value=0.049  Score=55.00  Aligned_cols=182  Identities=16%  Similarity=0.142  Sum_probs=94.1

Q ss_pred             CCCEEEEEeC----C-----CeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 005913          432 LGDFILSSSA----D-----TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRI  495 (670)
Q Consensus       432 ~~~~L~s~s~----D-----g~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-----g~v~lwd~~~~  495 (670)
                      ++.+++.|+.    +     ..+.+||+.+.+-...-.  ........+.+  ++..++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4556666654    2     458889987765332211  11111112222  66777777643     46888888765


Q ss_pred             ceeEEe--cccCCCeeEEEEcCCCCEEEEEEcC-----CcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEE
Q 005913          496 QPLRIM--AGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       496 ~~~~~~--~~~~~~v~~v~~~p~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      +-...-  ........++.+  ++..++.|+.+     ..+.+||+.+.+-...-.  .......++.+  ++++++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence            432221  111112222333  66677777654     468999988765432211  11111122222  567777776


Q ss_pred             CC-----CeEEEEeCCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 005913          567 ED-----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTS  621 (670)
Q Consensus       567 ~d-----g~I~iwDl~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~~~  621 (670)
                      .+     ..+.+||+.+.+-.  ..+.........+.+  ++.+++.|+.+     ..+.+||..+.
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            54     56999999876432  222211111122222  67778887754     35777887653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.76  E-value=0.092  Score=49.95  Aligned_cols=177  Identities=12%  Similarity=0.027  Sum_probs=101.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc------eeEEeeC-CCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee------E
Q 005913          433 GDFILSSSADTTIRLWSTKLNA------NLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL------R  499 (670)
Q Consensus       433 ~~~L~s~s~Dg~I~lwd~~~~~------~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~------~  499 (670)
                      ...|++...| +|+.=......      ....+-. .=..+.+++|+|+|...++  .+|.++-.+..+....      .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3456666667 66655444333      1122221 1236779999999987776  6677666665442211      1


Q ss_pred             Ee-cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-------EEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          500 IM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       500 ~~-~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-------~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                      .+ ..--....++.|.|+|.+.++  .||.|+-++-.+...       ..+-..--..+..|.|.|+|.+.+..  ||.+
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            11 111122588999999998888  569998888643211       11111122468999999999877666  7876


Q ss_pred             EEEeCCCCee------eEEee-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          572 MMWDLASGRC------VTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       572 ~iwDl~~~~~------~~~~~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      +-+...++..      ...+- .....-..+.|++++.+.++.  +|  ++|....
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~  208 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP  208 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence            5544432211      11111 222334457799999877766  66  4555444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.59  E-value=0.18  Score=50.99  Aligned_cols=205  Identities=10%  Similarity=0.109  Sum_probs=100.6

Q ss_pred             eEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEEC----CC-------cEEEEECCCCceeEE--ecccCCCee
Q 005913          444 TIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSH----DR-------TARIWSMDRIQPLRI--MAGHLSDVD  509 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~----dg-------~v~lwd~~~~~~~~~--~~~~~~~v~  509 (670)
                      .+..||..+.+....-... ...........++..++.|+.    ++       .+..||..+.+-...  +........
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            3788898877654321111 111112223446777788873    12       167788776543221  111111122


Q ss_pred             EEEEcCCCCEEEEEEcC-------CcEEEEECCCCcEEEEEecCCCCe-EEEEEcCCCCEEEEEEC------CCeEEEEe
Q 005913          510 CVRWHINCNYIATGSSD-------KTVRLWDVSSGECVRIFIGHRSMI-LSLAMSPDGRYMASGDE------DGTIMMWD  575 (670)
Q Consensus       510 ~v~~~p~~~~l~tgs~d-------g~I~iwd~~~~~~~~~~~~h~~~I-~~l~~sp~g~~l~sg~~------dg~I~iwD  575 (670)
                      ++.+  ++..++.|+.+       ..+.+||..+.+-...-....... .+++ ..++++++.|+.      -..+.+||
T Consensus       105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI-SHNGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE-EETTEEEEECCEESSSCBCCCEEEEE
T ss_pred             eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE-EECCEEEEEcCCCCCCCccceEEEEc
Confidence            2222  56677777754       358889988765443211111101 1122 245666666653      24589999


Q ss_pred             CCCCeee--EEeeCCCcceEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCccccccccccCCcccccccccCCCCCC
Q 005913          576 LASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP  648 (670)
Q Consensus       576 l~~~~~~--~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (670)
                      +.+.+-.  ..+.........+.+  ++.+++.|+.++     .+.+||+.+..             +..+..++.....
T Consensus       182 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------------W~~~~~~p~~r~~  246 (318)
T 2woz_A          182 PKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK-------------WEVMTEFPQERSS  246 (318)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC-------------EEECCCCSSCCBS
T ss_pred             CCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe-------------EEECCCCCCcccc
Confidence            9876432  222211111122222  677888877543     46678876642             2223333332222


Q ss_pred             eEEEEEecCCcEEEEeeCCC
Q 005913          649 VYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       649 V~~l~fs~~~~~La~gs~dg  668 (670)
                      ...  ..-++.+++.|+.++
T Consensus       247 ~~~--~~~~~~i~v~GG~~~  264 (318)
T 2woz_A          247 ISL--VSLAGSLYAIGGFAM  264 (318)
T ss_dssp             CEE--EEETTEEEEECCBCC
T ss_pred             eEE--EEECCEEEEECCeec
Confidence            222  234678888887653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.59  E-value=0.26  Score=49.65  Aligned_cols=176  Identities=9%  Similarity=0.057  Sum_probs=105.4

Q ss_pred             EEEcCCCCEEEEEeCC--------------CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE----CCCcEE
Q 005913          427 ASFSPLGDFILSSSAD--------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----HDRTAR  488 (670)
Q Consensus       427 l~~sp~~~~L~s~s~D--------------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s----~dg~v~  488 (670)
                      --+++++.+|.-+...              ..|+..++........... .    +..|++++.+|+-..    ....|+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3457788888766542              4677778876654333221 1    236788888887765    334566


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      ..+++.....+ +..+..    .+|+|+++.|+-.+. ...|...++..+...+.+.   +... ..++|++.+|+-...
T Consensus       133 ~~~~dGs~~~~-lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          133 RIRIDGEEKKK-IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EEETTSCCCEE-EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEG
T ss_pred             EEECCCCCeEE-EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEc
Confidence            66776544443 333322    345778888886655 6788888987766555443   2222 346699998887654


Q ss_pred             C--CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC--CCcEEEEeCCCC
Q 005913          568 D--GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA--DCTVKLWDVTTS  621 (670)
Q Consensus       568 d--g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~--Dg~I~iwd~~~~  621 (670)
                      .  ..|..-++..+.. ..+..  ..+  ..|+|++.+|+-++.  .+.|..-++...
T Consensus       204 ~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          204 NRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             GGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            4  3677777765542 33322  223  347788888876543  345555555543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.59  E-value=2  Score=51.52  Aligned_cols=174  Identities=10%  Similarity=0.091  Sum_probs=106.2

Q ss_pred             eEEEEeCCCCceeEEeeC-CCccEeEEEEec----CCCEEEEEE----------CCCcEEEEECCCCceeEEec-ccCCC
Q 005913          444 TIRLWSTKLNANLVCYKG-HNYPVWDVQFNP----QGHYFASSS----------HDRTARIWSMDRIQPLRIMA-GHLSD  507 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp----~g~~l~s~s----------~dg~v~lwd~~~~~~~~~~~-~~~~~  507 (670)
                      .|++.|..+++.+..+.- .+..+.+++...    ...+|++|+          ..|.|+++++...+...... ...+.
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            477788777776655542 234455555332    246888886          34789999987443222211 23567


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe--CCCCeeeEEe
Q 005913          508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD--LASGRCVTPL  585 (670)
Q Consensus       508 v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD--l~~~~~~~~~  585 (670)
                      |.+++-- +| +|++| ....|++|++...+.++.-..+-..|..+.....|.+++.|+.-..|.++.  ...++....-
T Consensus       888 v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a  964 (1158)
T 3ei3_A          888 VYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA  964 (1158)
T ss_dssp             EEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred             CEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence            7777632 45 55554 367899999987665542222222233333334578999998877777654  3344333222


Q ss_pred             e-CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          586 M-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       586 ~-~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      + .+...++++.+-.+ ..++.+..+|.|.+......
T Consensus       965 ~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          965 RDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             ECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTT
T ss_pred             eecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCC
Confidence            2 24467888887544 46778999999999987763

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.55  E-value=2.2  Score=51.29  Aligned_cols=240  Identities=11%  Similarity=0.120  Sum_probs=131.7

Q ss_pred             ecCCCCEEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC
Q 005913          348 INTHNGLNCASISQD------GSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH  420 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d------~~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  420 (670)
                      ......|+|+++.|.      ++++|+|+. |++|+|+++.........                          .+.+ 
T Consensus       550 ~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~--------------------------~L~~-  602 (1158)
T 3ei3_A          550 TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE--------------------------MLGG-  602 (1158)
T ss_dssp             EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE--------------------------ECCS-
T ss_pred             cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE--------------------------ECCC-
Confidence            344568999999863      479999997 999999999752211100                          0100 


Q ss_pred             ccCEEEEEEc--CCCCEEEEEeCCCeEEEEeCC--CCceeE---EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          421 SGPVYSASFS--PLGDFILSSSADTTIRLWSTK--LNANLV---CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       421 ~~~V~~l~~s--p~~~~L~s~s~Dg~I~lwd~~--~~~~~~---~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      .....++.+.  ....+|..|-.||.+.-+.++  ++....   .+-| ..++.-..+...|..-+.+..++...++.-+
T Consensus       603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~  681 (1158)
T 3ei3_A          603 EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN  681 (1158)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS
T ss_pred             CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC
Confidence            0122222221  233578899999987665543  443321   2233 4566655565555554444555665565544


Q ss_pred             CCceeEEecccCCCee-EEEEcCC--CCEEEEEEcCCcEEEEECCCCc--EEEEEecCCCCeEEEEEcCCCCEEEEEEC-
Q 005913          494 RIQPLRIMAGHLSDVD-CVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDE-  567 (670)
Q Consensus       494 ~~~~~~~~~~~~~~v~-~v~~~p~--~~~l~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~g~~l~sg~~-  567 (670)
                      + +.. ...-....+. ...|+..  .+-++.. .++.++|..+..-+  .++.+ .-...+..++++|..+.++.+.. 
T Consensus       682 ~-~l~-~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~  757 (1158)
T 3ei3_A          682 H-KLV-FSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSR  757 (1158)
T ss_dssp             S-SEE-EEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEE
T ss_pred             C-ceE-EeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEe
Confidence            2 222 1121222333 3345422  2334443 35568888775322  23333 23356778888887665544321 


Q ss_pred             ------------------------------------------------CCeEEEEeCCCCeeeEEeeCC-CcceEEEE--
Q 005913          568 ------------------------------------------------DGTIMMWDLASGRCVTPLMGH-TSCVWTLA--  596 (670)
Q Consensus       568 ------------------------------------------------dg~I~iwDl~~~~~~~~~~~h-~~~V~sl~--  596 (670)
                                                                      -+.|++.|-.+++.+..+.-. ...+.+++  
T Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v  837 (1158)
T 3ei3_A          758 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSC  837 (1158)
T ss_dssp             EEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEE
T ss_pred             ccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEE
Confidence                                                            134777887777776655422 23344444  


Q ss_pred             -EcCC-CCEEEEEE----------CCCcEEEEeCC
Q 005913          597 -YSCE-GSLLASGS----------ADCTVKLWDVT  619 (670)
Q Consensus       597 -~s~~-g~~l~sgs----------~Dg~I~iwd~~  619 (670)
                       |..+ ..+|+.|+          ..|.|.+|++.
T Consensus       838 ~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          838 KLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS  872 (1158)
T ss_dssp             CCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred             EEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence             4332 46888887          34789999986

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.54  E-value=0.18  Score=50.98  Aligned_cols=185  Identities=9%  Similarity=0.105  Sum_probs=92.1

Q ss_pred             cCCCCEEEEEeC----CC-------eEEEEeCCCCceeEEe--eCCCccEeEEEEecCCCEEEEEECC-------CcEEE
Q 005913          430 SPLGDFILSSSA----DT-------TIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHD-------RTARI  489 (670)
Q Consensus       430 sp~~~~L~s~s~----Dg-------~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~g~~l~s~s~d-------g~v~l  489 (670)
                      ..++..++.|+.    ++       .+..||..+.+-...-  ....... +++.. ++..++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEE
Confidence            446677777773    11       2777888765443221  1111111 12222 66777777754       25778


Q ss_pred             EECCCCceeEEecccC--CCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCC
Q 005913          490 WSMDRIQPLRIMAGHL--SDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGR  560 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~  560 (670)
                      ||..+.+-...-....  ....++.  .++..++.|+.      -..+.+||+.+.+-...-...... -.+++. -+++
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~  208 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGK  208 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE
T ss_pred             EeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCE
Confidence            8887654332211111  1112222  36666677664      235899999887544321111111 112222 2567


Q ss_pred             EEEEEECC-----CeEEEEeCCCCee--eEEeeCCCcceEEEEEcCCCCEEEEEECC--------------CcEEEEeCC
Q 005913          561 YMASGDED-----GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD--------------CTVKLWDVT  619 (670)
Q Consensus       561 ~l~sg~~d-----g~I~iwDl~~~~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~D--------------g~I~iwd~~  619 (670)
                      +++.|+.+     ..+.+||+.+.+-  +..+.........+.  .++.+++.|+.+              ..+.+||+.
T Consensus       209 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  286 (318)
T 2woz_A          209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD  286 (318)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred             EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence            77777643     3577899876542  222222221112222  256777777754              346777776


Q ss_pred             CC
Q 005913          620 TS  621 (670)
Q Consensus       620 ~~  621 (670)
                      +.
T Consensus       287 ~~  288 (318)
T 2woz_A          287 KK  288 (318)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.37  E-value=0.065  Score=55.25  Aligned_cols=219  Identities=11%  Similarity=0.094  Sum_probs=104.9

Q ss_pred             CCCEEEEEeC-CCeEEEEeCCC--CceeE--Eee-CCCccEeEEEEecCCCEEEEEEC-C---------CcEEEEECCCC
Q 005913          432 LGDFILSSSA-DTTIRLWSTKL--NANLV--CYK-GHNYPVWDVQFNPQGHYFASSSH-D---------RTARIWSMDRI  495 (670)
Q Consensus       432 ~~~~L~s~s~-Dg~I~lwd~~~--~~~~~--~~~-~h~~~V~~l~~sp~g~~l~s~s~-d---------g~v~lwd~~~~  495 (670)
                      ++.+++.|+. ...+.++|+.+  .+-..  .+. ...... +++. -++..++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            4555566653 34688889864  22211  111 111111 1222 25667777765 2         46888898775


Q ss_pred             ceeEEeccc-CCCeeEEEEcCCCCEEEEEEcC---------------------------------------CcEEEEECC
Q 005913          496 QPLRIMAGH-LSDVDCVRWHINCNYIATGSSD---------------------------------------KTVRLWDVS  535 (670)
Q Consensus       496 ~~~~~~~~~-~~~v~~v~~~p~~~~l~tgs~d---------------------------------------g~I~iwd~~  535 (670)
                      +-...-... .......+...+++.++.|+.+                                       ..+.+||..
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            432221111 1111111122467777788754                                       578999998


Q ss_pred             CCcEEEEEecCC-CCe-EEEEEcCCCCEEEEEEC------CCeEEEEeC--CCCe--eeEEeeCCCcceEEEEEcCCCCE
Q 005913          536 SGECVRIFIGHR-SMI-LSLAMSPDGRYMASGDE------DGTIMMWDL--ASGR--CVTPLMGHTSCVWTLAYSCEGSL  603 (670)
Q Consensus       536 ~~~~~~~~~~h~-~~I-~~l~~sp~g~~l~sg~~------dg~I~iwDl--~~~~--~~~~~~~h~~~V~sl~~s~~g~~  603 (670)
                      +.+-...-.... ... .+++.. ++++++.|+.      ...+.+||+  .+..  .+..+..........+...++.+
T Consensus       177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i  255 (357)
T 2uvk_A          177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL  255 (357)
T ss_dssp             TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred             CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence            775443322111 111 223322 5666666653      345777887  3332  22222111111111122236677


Q ss_pred             EEEEECC----------------------CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913          604 LASGSAD----------------------CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  661 (670)
Q Consensus       604 l~sgs~D----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L  661 (670)
                      ++.|+.+                      ..+.+||+.+..             +..+..++.....-  .++.-++.++
T Consensus       256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-------------W~~~~~~p~~r~~~--~~~~~~~~i~  320 (357)
T 2uvk_A          256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-------------WDKSGELSQGRAYG--VSLPWNNSLL  320 (357)
T ss_dssp             EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----------------CEEEEECSSCCBSS--EEEEETTEEE
T ss_pred             EEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-------------eeeCCCCCCCcccc--eeEEeCCEEE
Confidence            7777632                      246778876532             23333343333222  2234578888


Q ss_pred             EEeeCCC
Q 005913          662 AAGALSK  668 (670)
Q Consensus       662 a~gs~dg  668 (670)
                      +.|+.++
T Consensus       321 v~GG~~~  327 (357)
T 2uvk_A          321 IIGGETA  327 (357)
T ss_dssp             EEEEECG
T ss_pred             EEeeeCC
Confidence            8888764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.31  E-value=0.14  Score=61.30  Aligned_cols=229  Identities=11%  Similarity=0.172  Sum_probs=133.3

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEE
Q 005913          359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS  438 (670)
Q Consensus       359 fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s  438 (670)
                      .+|..+.+|.-. ..+++|||+.+.....                            .+. ...+|.-=.|-... .|+.
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klk----------------------------s~~-~~e~VvfWkWis~~-~l~l  121 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMK----------------------------AHT-MTDDVTFWKWISLN-TVAL  121 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhc----------------------------ccc-cCCCceEEEecCCC-eeEE
Confidence            455566666553 6789999987522111                            111 12356556676443 3444


Q ss_pred             EeCCCeEEEEeCCCC-ceeEEeeCC----CccEeEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEecccCC
Q 005913          439 SSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGHLS  506 (670)
Q Consensus       439 ~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s-------~dg~v~lwd~~~~~~~~~~~~~~~  506 (670)
                      .+ +..|+-|++... .+...+..|    +..|..-..+++.++++..|       -.|.+.+|+.+++ ..+.+.||.+
T Consensus       122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~  199 (1630)
T 1xi4_A          122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  199 (1630)
T ss_pred             Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence            43 357999999743 344444444    45676777788888877654       3488999998764 3345566765


Q ss_pred             CeeEEEEc--CC-CCEEEEEEc---CCcEEEEECCCC---c------EEEEEecC---CCCeEEEEEcCCCCEEEEEECC
Q 005913          507 DVDCVRWH--IN-CNYIATGSS---DKTVRLWDVSSG---E------CVRIFIGH---RSMILSLAMSPDGRYMASGDED  568 (670)
Q Consensus       507 ~v~~v~~~--p~-~~~l~tgs~---dg~I~iwd~~~~---~------~~~~~~~h---~~~I~~l~~sp~g~~l~sg~~d  568 (670)
                      ....+...  +. .+.++.+..   .+.++|.++...   .      .+..+...   ..-..++..|+.-..++..+.-
T Consensus       200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~  279 (1630)
T 1xi4_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY  279 (1630)
T ss_pred             hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence            54444332  11 223332222   368999888542   1      11122111   2234577888888888899999


Q ss_pred             CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      |.|.++|+.+|.++..-+-...+|...+-+....=++.....|.|.--.+..
T Consensus       280 G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          280 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             ceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence            9999999999998866554445555444443322333344566555444443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.29  E-value=2.2  Score=48.68  Aligned_cols=224  Identities=10%  Similarity=0.114  Sum_probs=131.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..|.|+....+| .|.+|+.+| +..||..+..-..                            ........|.++... 
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----------------------------~~~~~~~~i~~i~~~-  111 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----------------------------PETDFPTDVRTMALQ-  111 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----------------------------CSCCCCSCEEEEEEE-
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----------------------------cccCCCceEEEEEec-
Confidence            458888877766 566677665 6788865411000                            000012346666543 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEee-----CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc---
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANLVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---  503 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-----~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~---  503 (670)
                      ++ .|..++.+ -+..++..+.... .+.     .....|.++....+|...+ |+.+ -+..++..+.+.......   
T Consensus       112 ~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~  186 (758)
T 3ott_A          112 GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHS  186 (758)
T ss_dssp             TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCT
T ss_pred             CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCcc
Confidence            44 56666666 5888898765432 331     1234588888877776554 5544 577888776543221111   


Q ss_pred             --cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          504 --HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       504 --~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                        ....|.++...++++.|..|+. +-+..+|..+++...........|.++...++|.+.+ |+.+ -+.++|..++..
T Consensus       187 ~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~  263 (758)
T 3ott_A          187 SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL  263 (758)
T ss_dssp             TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC
T ss_pred             ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE
Confidence              1124788888777776666664 4588899877654332211234588888888887655 4444 588898876543


Q ss_pred             eEEeeC--------CCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          582 VTPLMG--------HTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       582 ~~~~~~--------h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      . .+..        ....|.++....+|.+.+ |+..| +.++.
T Consensus       264 ~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~  304 (758)
T 3ott_A          264 Q-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSR  304 (758)
T ss_dssp             E-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEEC
T ss_pred             E-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccc
Confidence            2 2211        124689998888887544 55556 55543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.10  E-value=0.74  Score=46.31  Aligned_cols=172  Identities=9%  Similarity=0.064  Sum_probs=101.9

Q ss_pred             CCCCEEEEEe--CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC--------------CcEEEEECCC
Q 005913          431 PLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--------------RTARIWSMDR  494 (670)
Q Consensus       431 p~~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--------------g~v~lwd~~~  494 (670)
                      .++.+|....  .++.|+..+..... ...+...    .+--++++|.+|+-+...              ..|+..+++.
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4567666553  35666666665433 3333321    134567888888777542              4678888877


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEE----cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-DG  569 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs----~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~-dg  569 (670)
                      .+.......     .+..|++++++|+-..    .+..|+..++.... ...+..+..    .+++|+|+.|+-.+. ..
T Consensus        98 ~~~~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~  167 (302)
T 3s25_A           98 HGSTVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG  167 (302)
T ss_dssp             CCCEEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred             CcceEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence            654433221     2336788999988776    34466677776444 334444433    456888888886654 67


Q ss_pred             eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCC--cEEEEeCCCC
Q 005913          570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--TVKLWDVTTS  621 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg--~I~iwd~~~~  621 (670)
                      .|.+.++..+.....+.   +... ..++|++.+|+-...++  .|..-++...
T Consensus       168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          168 QLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             CEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred             eEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence            88998987665443332   2222 23568888887766443  4555555443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.91  E-value=0.18  Score=51.78  Aligned_cols=189  Identities=11%  Similarity=0.024  Sum_probs=91.5

Q ss_pred             CCCEEEEEeC-C---------CeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECC----------------
Q 005913          432 LGDFILSSSA-D---------TTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHD----------------  484 (670)
Q Consensus       432 ~~~~L~s~s~-D---------g~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d----------------  484 (670)
                      ++.+++.|+. +         ..+.+||+.+.+-...-... .......+...++..++.|+.+                
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  144 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGK  144 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCC
Confidence            4556666654 1         46888998876543321111 1111111222577788888754                


Q ss_pred             -----------------------CcEEEEECCCCceeEEecccC-CCe-eEEEEcCCCCEEEEEEc------CCcEEEEE
Q 005913          485 -----------------------RTARIWSMDRIQPLRIMAGHL-SDV-DCVRWHINCNYIATGSS------DKTVRLWD  533 (670)
Q Consensus       485 -----------------------g~v~lwd~~~~~~~~~~~~~~-~~v-~~v~~~p~~~~l~tgs~------dg~I~iwd  533 (670)
                                             ..+.+||..+.+-...-.... ..- .+++. -++..++.|+.      ...+.+||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d  223 (357)
T 2uvk_A          145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELD  223 (357)
T ss_dssp             CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEE
T ss_pred             cccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEE
Confidence                                   478899987764333221111 111 22332 25566666653      34577788


Q ss_pred             C--CCCcEEEE--EecCCCCeEEEEEcCCCCEEEEEECC----------------------CeEEEEeCCCC--eeeEEe
Q 005913          534 V--SSGECVRI--FIGHRSMILSLAMSPDGRYMASGDED----------------------GTIMMWDLASG--RCVTPL  585 (670)
Q Consensus       534 ~--~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~sg~~d----------------------g~I~iwDl~~~--~~~~~~  585 (670)
                      +  .+.+-...  +........+.+...++++++.|+.+                      ..+.+||+.+.  ..+..+
T Consensus       224 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  303 (357)
T 2uvk_A          224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL  303 (357)
T ss_dssp             CC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred             ecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence            7  44332221  11111111111223356677777632                      25788998754  344444


Q ss_pred             eCCCcceEEEEEcCCCCEEEEEECCC------cEEEEeCCCCcc
Q 005913          586 MGHTSCVWTLAYSCEGSLLASGSADC------TVKLWDVTTSTK  623 (670)
Q Consensus       586 ~~h~~~V~sl~~s~~g~~l~sgs~Dg------~I~iwd~~~~~~  623 (670)
                      ......-.++  ..++.+++.||.++      .|.+++++..+.
T Consensus       304 p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          304 SQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             SSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred             CCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence            3322222222  23678888888653      355557776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.89  E-value=0.29  Score=58.72  Aligned_cols=229  Identities=11%  Similarity=0.157  Sum_probs=135.4

Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEeccc---
Q 005913          429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGH---  504 (670)
Q Consensus       429 ~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~---  504 (670)
                      .+|..+.++.-. ..++.|+|+.+...+..+.- ..+|.--.|-... .++..+ +..|+.|++.. ..|+..|..|   
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence            556666665544 67899999998887776664 3456666665443 343333 36799999973 4566666655   


Q ss_pred             -CCCeeEEEEcCCCCEEEEEE-------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEc--CCCC-EEEEEE---CCCe
Q 005913          505 -LSDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMS--PDGR-YMASGD---EDGT  570 (670)
Q Consensus       505 -~~~v~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s--p~g~-~l~sg~---~dg~  570 (670)
                       ...|..-..+++.++++..+       -.|.+.+|.+..+.. +.+.||.+....+...  +... .++.+.   ..+.
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k  227 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence             35677777788999887644       347888998765433 3455665544333332  1112 222222   1278


Q ss_pred             EEEEeCCCC---eeeE------EeeC---CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          571 IMMWDLASG---RCVT------PLMG---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       571 I~iwDl~~~---~~~~------~~~~---h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      ++|.++...   .+..      .+..   -.....++..|+.-.++...+.-|.|.++|+.++..+....-...+   -.
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~---iF  304 (1630)
T 1xi4_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET---IF  304 (1630)
T ss_pred             EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCc---eE
Confidence            999998542   1111      1111   1233456777888788999999999999999998876443211111   01


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      +.......+.|.+  .++.|++|.++-..
T Consensus       305 ~~~~~~~~~g~~~--vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          305 VTAPHEATAGIIG--VNRKGQVLSVCVEE  331 (1630)
T ss_pred             EeccCCCCCceEE--EcCCceEEEEEEcc
Confidence            1122223334443  35777777665543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.88  E-value=0.14  Score=48.81  Aligned_cols=142  Identities=15%  Similarity=0.060  Sum_probs=85.0

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------EEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECC
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL------VCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD  493 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~------~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~  493 (670)
                      ..+..++|+|+|.+.++  .+|.++-.+..+....      ..+-  +-+. ...+.|.|+|.+.++  .||.|+-++--
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            46779999999886666  6777766665442211      1111  1111 468899999988777  56988888752


Q ss_pred             CCce-------eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE------EEEEe-cCCCCeEEEEEcCCC
Q 005913          494 RIQP-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------VRIFI-GHRSMILSLAMSPDG  559 (670)
Q Consensus       494 ~~~~-------~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~------~~~~~-~h~~~I~~l~~sp~g  559 (670)
                      +...       ..+-.+--..+.+|.|.|+|.+.++.  |+.++-+..-++..      ...+- ......+-+.|.|+|
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            2111       11122233578999999999988777  77765443332211      11111 222344557788888


Q ss_pred             CEEEEEECCCeEE
Q 005913          560 RYMASGDEDGTIM  572 (670)
Q Consensus       560 ~~l~sg~~dg~I~  572 (670)
                      .+.++.  +|.++
T Consensus       194 ~l~~v~--~g~~Y  204 (236)
T 1tl2_A          194 TLFGVQ--GGKFY  204 (236)
T ss_dssp             CEEEEE--TTEEE
T ss_pred             cEEEEe--CCeEE
Confidence            776666  66443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.026  Score=57.92  Aligned_cols=189  Identities=9%  Similarity=0.012  Sum_probs=106.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCC-CccEeEEEEe--c-CCCEEEEE-ECCCcEEEEECCCCceeEEecc----c
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFN--P-QGHYFASS-SHDRTARIWSMDRIQPLRIMAG----H  504 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~s--p-~g~~l~s~-s~dg~v~lwd~~~~~~~~~~~~----~  504 (670)
                      ..++.++.||.|+-+|..+++.+-.++.. ..++....-.  + ++..++.. +.||.|..++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888999999999999999988887654 1222221100  1 22333333 5899999999888754433321    1


Q ss_pred             CCCeeE---EEE-c----CCCCEEEEEEcCCcEEEEECCCCcEEEEEecCC--CC-----eEEEEEc-----CCCCEEEE
Q 005913          505 LSDVDC---VRW-H----INCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SM-----ILSLAMS-----PDGRYMAS  564 (670)
Q Consensus       505 ~~~v~~---v~~-~----p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~-----I~~l~~s-----p~g~~l~s  564 (670)
                      .+++..   ... .    ..+..+++|+.+|.+...|+++|+.+..+....  +.     ..|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            112211   000 0    145688999999999999999999999886431  10     1122211     12456777


Q ss_pred             EECCCeEEEEeCCCCeeeEEe-----eCCCc--ceE-EEEEcCCCCEEEEEECCCcEEEEeCCCCcccc
Q 005913          565 GDEDGTIMMWDLASGRCVTPL-----MGHTS--CVW-TLAYSCEGSLLASGSADCTVKLWDVTTSTKVL  625 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~-----~~h~~--~V~-sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~  625 (670)
                      +..+..+.+.+ ++|+ +-.+     ..+..  .+. +-..+.++.+ +.++.||.|..+|..++....
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77777777766 4453 2111     11100  000 0001123555 446778888888877776554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.23  Score=50.83  Aligned_cols=141  Identities=13%  Similarity=0.037  Sum_probs=78.3

Q ss_pred             eCCCeEEEEeCCCCceeEEeeC----CCccEeE---EEE-----ecCCCEEEEEECCCcEEEEECCCCceeEEecccCC-
Q 005913          440 SADTTIRLWSTKLNANLVCYKG----HNYPVWD---VQF-----NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS-  506 (670)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~---l~~-----sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~-  506 (670)
                      +.||.|..++..++.....+..    ...|+..   ...     ...+..+++|+.+|.+...|..+|+.+..+..... 
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~  143 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKN  143 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBC
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCc
Confidence            5789999999887744433321    1222221   000     01455788999999999999999999988863321 


Q ss_pred             ------CeeEEEEc-----CCCCEEEEEEcCCcEEEEECCCCcEEEEE-----ecCCCC--e-EEEEEcCCCCEEEEEEC
Q 005913          507 ------DVDCVRWH-----INCNYIATGSSDKTVRLWDVSSGECVRIF-----IGHRSM--I-LSLAMSPDGRYMASGDE  567 (670)
Q Consensus       507 ------~v~~v~~~-----p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-----~~h~~~--I-~~l~~sp~g~~l~sg~~  567 (670)
                            ...|....     -.+..++.|..+..+.+.+ ++|+ +..+     ..+...  + .+-..+.++.+ +.++.
T Consensus       144 ~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~  220 (339)
T 2be1_A          144 GYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFR  220 (339)
T ss_dssp             C--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEET
T ss_pred             ccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECC
Confidence                  11122211     1245777787777777777 4453 2111     111000  0 00001224555 44788


Q ss_pred             CCeEEEEeCCCCeeeE
Q 005913          568 DGTIMMWDLASGRCVT  583 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~  583 (670)
                      ||.|.-+|..+|..+-
T Consensus       221 dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          221 DKSLLASDLDFRIARW  236 (339)
T ss_dssp             TTEEEEECSTTCCEEE
T ss_pred             CCEEEEEECCCCcEEE
Confidence            8999999988887664

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.18  E-value=0.55  Score=46.74  Aligned_cols=184  Identities=15%  Similarity=0.053  Sum_probs=97.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                      .|..++...... ++. . ||.|+.|-......+-.-..-...|..++....  +.+.-. ||.|+.|-....-.+-...
T Consensus        64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            466666653332 333 4 899999976643322111111235777766543  333334 8999999765422221112


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                      .....|..++...+.  .+.-. ||.|+.|-......+..-..-...|..++...+. .++.  .||.|+.|=......+
T Consensus       138 ~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gql  211 (282)
T 3qhy_B          138 EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQT  211 (282)
T ss_dssp             GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTT
T ss_pred             cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCC
Confidence            233557777654333  22233 7999999765322211111123457777766443 2333  5899999976543222


Q ss_pred             EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      ..-......|..++-..... ++..  ||.|..|=....
T Consensus       212 g~p~~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          212 TVPTEALSGVSAIASGEWYS-LALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             CCCGGGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCC
T ss_pred             CCCcccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCC
Confidence            11111123567777654433 3333  999999976654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.11  E-value=0.19  Score=54.22  Aligned_cols=188  Identities=11%  Similarity=0.118  Sum_probs=114.5

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCCceeEEeeC-CCccEeEEEEe--cCCCEEEEEEC-------CCcE---------EE--
Q 005913          432 LGDFILSSS-ADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFN--PQGHYFASSSH-------DRTA---------RI--  489 (670)
Q Consensus       432 ~~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~s--p~g~~l~s~s~-------dg~v---------~l--  489 (670)
                      ||++|+.-. .+..|-..+++..++-..+.- ....+.++.|-  |+..|++.++.       ||..         .+  
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            567777765 467788889998887666553 34567788886  67778888763       3331         11  


Q ss_pred             -EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCC---------------cEEEE---------------------
Q 005913          490 -WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---------------TVRLW---------------------  532 (670)
Q Consensus       490 -wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---------------~I~iw---------------------  532 (670)
                       .|.++.+....+.- .+....+...+++.+.++.+.+.               .+.++                     
T Consensus       221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g  299 (638)
T 3sbq_A          221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK  299 (638)
T ss_dssp             EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence             12223222222211 22344455677888877766321               23344                     


Q ss_pred             ----ECCC----CcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCC------ee-------eEEeeCCCc
Q 005913          533 ----DVSS----GECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG------RC-------VTPLMGHTS  590 (670)
Q Consensus       533 ----d~~~----~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~------~~-------~~~~~~h~~  590 (670)
                          |.+.    +..+..+..-......+.++|||++++.++ .+.++.++|+.+-      +.       +.+.. -.-
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence                4333    212222222223445788999999988765 6789999998742      11       22222 233


Q ss_pred             ceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       591 ~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .....+|.++|+-..|.--|..|.-|++...
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            4578899999976777779999999998753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.80  E-value=1.8  Score=49.04  Aligned_cols=150  Identities=7%  Similarity=0.024  Sum_probs=81.9

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCCCceeEEeeCCCc-cEeEEEEecCCCEEEEEECCC--cEEEEECCCCceeEEec
Q 005913          432 LGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIMA  502 (670)
Q Consensus       432 ~~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~dg--~v~lwd~~~~~~~~~~~  502 (670)
                      ++..++.|+.+      ..+.+||..+.+-...-..... .-.+++...++..++.||.++  .+.+||..+..-...-.
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            56677777643      3578889887543322111111 111222223788888887654  68999988754332211


Q ss_pred             -----ccCCCeeEEEEcCC-CCEEEEEEc--C-----CcEEEEECCCCc------EEEEEe-cCCC-CeEEEEEcCCCCE
Q 005913          503 -----GHLSDVDCVRWHIN-CNYIATGSS--D-----KTVRLWDVSSGE------CVRIFI-GHRS-MILSLAMSPDGRY  561 (670)
Q Consensus       503 -----~~~~~v~~v~~~p~-~~~l~tgs~--d-----g~I~iwd~~~~~------~~~~~~-~h~~-~I~~l~~sp~g~~  561 (670)
                           .......++.+..+ +..++.|+.  +     ..+.+||+.+..      -..... .... .-.+++...++++
T Consensus       531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i  610 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL  610 (695)
T ss_dssp             SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence                 11122334555655 667777765  2     458999998876      222211 0111 1122333333777


Q ss_pred             EEEEEC--------CCeEEEEeCCCCee
Q 005913          562 MASGDE--------DGTIMMWDLASGRC  581 (670)
Q Consensus       562 l~sg~~--------dg~I~iwDl~~~~~  581 (670)
                      ++.||.        ...|.+||+.+..-
T Consensus       611 yv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          611 LIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             EEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             EEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            777774        34699999987654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.25  E-value=7  Score=42.35  Aligned_cols=220  Identities=11%  Similarity=0.127  Sum_probs=124.5

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEeeCCC-------------------------cc--EeEEEEec---CCCEEEEEE-CC
Q 005913          436 ILSSSADTTIRLWSTKLNANLVCYKGHN-------------------------YP--VWDVQFNP---QGHYFASSS-HD  484 (670)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-------------------------~~--V~~l~~sp---~g~~l~s~s-~d  484 (670)
                      +.||+..|.|+|+-+.+++.+..+...+                         +.  -..+++..   ||+|++.-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            5678889999999988888777653211                         00  11233332   677887776 45


Q ss_pred             CcEEEEECCCCceeEEec-ccCCCeeEEEEc--CCCCEEEEEEc-------CCcE---------EE---EECCCCcEEEE
Q 005913          485 RTARIWSMDRIQPLRIMA-GHLSDVDCVRWH--INCNYIATGSS-------DKTV---------RL---WDVSSGECVRI  542 (670)
Q Consensus       485 g~v~lwd~~~~~~~~~~~-~~~~~v~~v~~~--p~~~~l~tgs~-------dg~I---------~i---wd~~~~~~~~~  542 (670)
                      ..|...+++..++-.++. .....+.+++|-  |+..|+++++.       ||..         .+   .|..+.+....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            688888999888776665 345678888886  78899999874       3321         11   12222222221


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEECC---------------CeEEEEeC-------------------------CC----
Q 005913          543 FIGHRSMILSLAMSPDGRYMASGDED---------------GTIMMWDL-------------------------AS----  578 (670)
Q Consensus       543 ~~~h~~~I~~l~~sp~g~~l~sg~~d---------------g~I~iwDl-------------------------~~----  578 (670)
                      +.- .+....+...++|.+.++.+.+               ..+.++++                         +.    
T Consensus       233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~  311 (638)
T 3sbq_A          233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK  311 (638)
T ss_dssp             EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred             EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence            111 2233445667788888877643               13444443                         32    


Q ss_pred             CeeeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913          579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  657 (670)
Q Consensus       579 ~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~  657 (670)
                      +..+..+-.-......+..+|||++++.++ .+.+|.|+|+...........   ...-..+..-..-.......+|.++
T Consensus       312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~---~~~~~~~~ae~e~GlGPlHt~Fd~~  388 (638)
T 3sbq_A          312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL---ADPRDVIVGEPELGLGPLHTTFDGR  388 (638)
T ss_dssp             CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC---SCGGGGEEECCBCCSCEEEEEECSS
T ss_pred             CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc---cCcccceEeeccCCCcccEEEECCC
Confidence            111111111112345688999999887766 678999999875322111000   0000111111123345678899998


Q ss_pred             Cc
Q 005913          658 NL  659 (670)
Q Consensus       658 ~~  659 (670)
                      |.
T Consensus       389 G~  390 (638)
T 3sbq_A          389 GN  390 (638)
T ss_dssp             SE
T ss_pred             Cc
Confidence            84

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.93  E-value=1.4  Score=49.96  Aligned_cols=191  Identities=10%  Similarity=0.046  Sum_probs=102.6

Q ss_pred             CCCCEEEEEeCC----CeEEEEeCCCCceeEEe-e------CCCccEeEEEEec-CCCEEEEEECC------CcEEEEEC
Q 005913          431 PLGDFILSSSAD----TTIRLWSTKLNANLVCY-K------GHNYPVWDVQFNP-QGHYFASSSHD------RTARIWSM  492 (670)
Q Consensus       431 p~~~~L~s~s~D----g~I~lwd~~~~~~~~~~-~------~h~~~V~~l~~sp-~g~~l~s~s~d------g~v~lwd~  492 (670)
                      .++..++.|+.+    ..+.+||..+++....- .      .....-.+++..+ ++..++.||.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            356666777643    46888998876544332 1      0111112233333 67777887754      35778888


Q ss_pred             CCCceeEEecccCCC-eeEEEEcCCCCEEEEEEcCC--cEEEEECCCCcEEEEEe-----cCCCCeEEEEEcCC-CCEEE
Q 005913          493 DRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFI-----GHRSMILSLAMSPD-GRYMA  563 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~-v~~v~~~p~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~-----~h~~~I~~l~~sp~-g~~l~  563 (670)
                      .+.+-...-...... -.+++...++..++.|+.++  .+.+||..+..-...-.     .......++.+..+ ++.++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            765332221111111 11223324788888887654  79999998876443221     01112233555655 66777


Q ss_pred             EEEC--C-----CeEEEEeCCCCe--------eeEEee-CCCcceEEEEEcCCCCEEEEEECC--------CcEEEEeCC
Q 005913          564 SGDE--D-----GTIMMWDLASGR--------CVTPLM-GHTSCVWTLAYSCEGSLLASGSAD--------CTVKLWDVT  619 (670)
Q Consensus       564 sg~~--d-----g~I~iwDl~~~~--------~~~~~~-~h~~~V~sl~~s~~g~~l~sgs~D--------g~I~iwd~~  619 (670)
                      .||.  +     +.+.+||+.+..        .+.... ...... +++...++.+++.||.+        ..|.+||..
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            7765  2     468999988766        111111 111111 22233337788888743        458889887


Q ss_pred             CCc
Q 005913          620 TST  622 (670)
Q Consensus       620 ~~~  622 (670)
                      +..
T Consensus       635 t~~  637 (695)
T 2zwa_A          635 SET  637 (695)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.14  E-value=11  Score=40.30  Aligned_cols=248  Identities=15%  Similarity=0.143  Sum_probs=121.2

Q ss_pred             CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee--eecCccCEEEEE
Q 005913          352 NGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL--YQGHSGPVYSAS  428 (670)
Q Consensus       352 ~~V~~l~fs~d~~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~l~  428 (670)
                      ..-+.|+|.|||+ .|+++...|.|++++...........            .+      ......  ..+..+....|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~------------~~------~~~~~~g~~~~~e~Gllgia   75 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYL------------DI------HKLVQSGIKGGDERGLLSLA   75 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSE------------EC------TTTBCCCCSSSCCCSEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeec------------CC------cceeccCccccCCCcceeeE
Confidence            3568999999996 45556689999999643210000000            00      000000  012246778999


Q ss_pred             EcCC----CCEEEEEeC--C----------CeEEEEeCCCC----------ceeEEee--CCCccEeEEEEecCCCEEEE
Q 005913          429 FSPL----GDFILSSSA--D----------TTIRLWSTKLN----------ANLVCYK--GHNYPVWDVQFNPQGHYFAS  480 (670)
Q Consensus       429 ~sp~----~~~L~s~s~--D----------g~I~lwd~~~~----------~~~~~~~--~h~~~V~~l~~sp~g~~l~s  480 (670)
                      |+|+    +.+.++-+.  +          ..|.-|.+...          +.+..+.  ........|.|.|||.++++
T Consensus        76 ~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~  155 (463)
T 2wg3_C           76 FHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYII  155 (463)
T ss_dssp             ECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEE
T ss_pred             eCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEE
Confidence            9996    333333221  1          13444555421          1222222  12234678999999987777


Q ss_pred             EECCC-----------------cEEEEECCCC--------------------ceeEEecccCCCeeEEEEcCC-----CC
Q 005913          481 SSHDR-----------------TARIWSMDRI--------------------QPLRIMAGHLSDVDCVRWHIN-----CN  518 (670)
Q Consensus       481 ~s~dg-----------------~v~lwd~~~~--------------------~~~~~~~~~~~~v~~v~~~p~-----~~  518 (670)
                      .+..+                 .|.-.+.+..                    .+...-.+| .....++|+|.     |.
T Consensus       156 ~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~-RNp~gla~dp~tg~~~G~  234 (463)
T 2wg3_C          156 LGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL-HDPGRCAVDRHPTDININ  234 (463)
T ss_dssp             ECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC-SSCCBEEEESSCSSTTCS
T ss_pred             eCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC-CCcceEEECCCCCCcccc
Confidence            65432                 2333344431                    011112234 33457899986     33


Q ss_pred             -EEEEEEcCC----cEEEEECCCC------cEEEEEecCC-CCeEEEEEcC-------CCCEEEEEECCCeEEEEeCCCC
Q 005913          519 -YIATGSSDK----TVRLWDVSSG------ECVRIFIGHR-SMILSLAMSP-------DGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       519 -~l~tgs~dg----~I~iwd~~~~------~~~~~~~~h~-~~I~~l~~sp-------~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                       +++.+...|    .-.|..+..+      .++..+..|. ..+..+.|-.       .|.+|+ +...+.|....+...
T Consensus       235 l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~  313 (463)
T 2wg3_C          235 LTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPV  313 (463)
T ss_dssp             EEEEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC---
T ss_pred             eEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCC
Confidence             444433212    1234433333      2344443221 4677777743       234444 444577766666433


Q ss_pred             ee---eEEe-e--------CCCcceEEEEEcCCCCEEEEEECC-----CcEEEEeCC
Q 005913          580 RC---VTPL-M--------GHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVT  619 (670)
Q Consensus       580 ~~---~~~~-~--------~h~~~V~sl~~s~~g~~l~sgs~D-----g~I~iwd~~  619 (670)
                      ..   ...+ .        .....+..+...|||.++++....     ..=+||.+.
T Consensus       314 ~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          314 TKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             --CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             CceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence            21   1111 1        123578999999999988877521     233566665

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.65  E-value=3.7  Score=40.63  Aligned_cols=185  Identities=17%  Similarity=0.067  Sum_probs=97.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                      .|..++....  +.+.-. ||.|+.|-......+-.-......|..++.... +.++. . ||.|+.|-....-.+-.-.
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            4566666532  222234 899999976643322111111235666666533 33444 4 8999999765422221111


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeee
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV  582 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~  582 (670)
                      .-...|..++...+  ..++-+ ||.|+.|-......+.........|..++...+..  +.-. ||.|+.|-......+
T Consensus        99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~--~~l~-~G~v~~wG~n~~gql  172 (282)
T 3qhy_B           99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA--LAVK-NGGVIAWGDNYFGQT  172 (282)
T ss_dssp             GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE--EEEE-TTEEEEEECCTTSTT
T ss_pred             ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE--EEEE-CCEEEEecCCCCCCC
Confidence            12346777776544  333344 99999997654222111112234577777654432  2233 799999976543222


Q ss_pred             EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       583 ~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      ..-..-...|..++...+. .++.  .||.|..|-.....
T Consensus       173 g~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~g  209 (282)
T 3qhy_B          173 TVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYK  209 (282)
T ss_dssp             SCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTS
T ss_pred             CCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCC
Confidence            1111112457777765433 3333  59999999765543

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=90.99  E-value=0.2  Score=39.64  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005913            3 ELQVVEFVATYLKKKGFSEAENALQAEIQR   32 (670)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~   32 (670)
                      .++|+++|++||...||..+-++||+|+..
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~   39 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAEL   39 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcC
Confidence            368999999999999999999999999653

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=82.99  E-value=1.4  Score=35.16  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             CChHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCC
Q 005913            1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKS   35 (670)
Q Consensus         1 ~~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~   35 (670)
                      ++.+++|.+|-.||+.-||..|--+|..|+...+.
T Consensus         3 itsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~   37 (90)
T 2xtc_A            3 ITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQS   37 (90)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence            36789999999999999999999999999988764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.49  E-value=20  Score=42.06  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=34.0

Q ss_pred             CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe
Q 005913          506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI  544 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~  544 (670)
                      ..+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            356778888899999999999999999999999987753

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.72  E-value=62  Score=34.26  Aligned_cols=238  Identities=11%  Similarity=0.040  Sum_probs=115.7

Q ss_pred             cCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc---eeEEee-----C----CCccEeEEEEecC----CCEEEEEECC
Q 005913          422 GPVYSASFSPLGD-FILSSSADTTIRLWSTKLNA---NLVCYK-----G----HNYPVWDVQFNPQ----GHYFASSSHD  484 (670)
Q Consensus       422 ~~V~~l~~sp~~~-~L~s~s~Dg~I~lwd~~~~~---~~~~~~-----~----h~~~V~~l~~sp~----g~~l~s~s~d  484 (670)
                      ..-+.|+|.|++. .|+++...|.|++++.....   .+..+.     +    .......|+|+|+    +..+++-+.+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4557899999996 55666788999999754321   222211     1    1345788999996    4444443321


Q ss_pred             ------------CcEEEEECCCC----------ceeEEec--ccCCCeeEEEEcCCCCEEEEEEcCC-------------
Q 005913          485 ------------RTARIWSMDRI----------QPLRIMA--GHLSDVDCVRWHINCNYIATGSSDK-------------  527 (670)
Q Consensus       485 ------------g~v~lwd~~~~----------~~~~~~~--~~~~~v~~v~~~p~~~~l~tgs~dg-------------  527 (670)
                                  ..|.-|.+...          +.+..+.  ........|+|.|+|.+.++.+..+             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence                        13444555321          1222221  1122367899999998777655432             


Q ss_pred             ----cEEEEECCCC---------------------cEEEEEecCCCCeEEEEEcCC-----CC-EEEEEECCC----eEE
Q 005913          528 ----TVRLWDVSSG---------------------ECVRIFIGHRSMILSLAMSPD-----GR-YMASGDEDG----TIM  572 (670)
Q Consensus       528 ----~I~iwd~~~~---------------------~~~~~~~~h~~~I~~l~~sp~-----g~-~l~sg~~dg----~I~  572 (670)
                          .|.-.|....                     ..+. -.+|.. ...++|.|.     |. +++.+...|    .-.
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence                2333444321                     0111 124444 457899996     34 444433212    123


Q ss_pred             EEeCCCC------eeeEEeeCCC-cceEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          573 MWDLASG------RCVTPLMGHT-SCVWTLAYSC-------EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       573 iwDl~~~------~~~~~~~~h~-~~V~sl~~s~-------~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      |..+..+      .++..+..|. ..+..+.|-.       .|.+| .+...+.|....+...........-...   ..
T Consensus       252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g---~~  327 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLG---TS  327 (463)
T ss_dssp             EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEE---ET
T ss_pred             EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecC---Cc
Confidence            3333322      2344443332 4677787743       23344 4444466555554433211100000000   00


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                      ..........+..+.+.|+|.++++..
T Consensus       328 ~~~~~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          328 GSCRGYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             TSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred             ccccccccCcceEEEECCCCCEEEEec
Confidence            000011235689999999998887764

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=80.44  E-value=49  Score=32.92  Aligned_cols=186  Identities=9%  Similarity=0.064  Sum_probs=111.8

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcee-------E--EeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCC------
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANL-------V--CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI------  495 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~-------~--~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~------  495 (670)
                      ++..++++.+.+|.|+--.+......       .  .++.. ..+..+........++..+..|.++-......      
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            45677888999999998766543221       1  12222 33445555556667888888898877765321      


Q ss_pred             ---cee---EEecccCCCeeEEEEcC---CCCEEEEEEcCCcEEEEECCC-------CcEEEEEecCCCCeEEEEEcCCC
Q 005913          496 ---QPL---RIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDG  559 (670)
Q Consensus       496 ---~~~---~~~~~~~~~v~~v~~~p---~~~~l~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~sp~g  559 (670)
                         .++   -.+. ....|.++...+   +..+++..+..|.++...+..       |.....+.. .+.+..+.....+
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence               110   0111 123344443332   467888899999999887742       222222222 4556666665556


Q ss_pred             CEEEEEECCCeEEEEeCCC---------CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          560 RYMASGDEDGTIMMWDLAS---------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       560 ~~l~sg~~dg~I~iwDl~~---------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ..++..+.+|.+..+....         |.....+.. ...|.++..-.++..|++.+..|..+..++..
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            6788899999999998643         222222222 34566665555666788899999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	670
d2nxpa1	149	d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human	8e-53
d2j4ba1	131	d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Enceph	2e-50
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-49
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-43
d2j49a1	134	d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Sacch	5e-48
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-38
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-37
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-37
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-28
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-31
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-28
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-26
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-30
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-26
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-28
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-19
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-27
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-22
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-20
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-19
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-21
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-15
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-21
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-18
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-18
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-21
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-20
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-19
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-17
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-21
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-20
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-19
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-19
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-18
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-18
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-16
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-16
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-09
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-14
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-13
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-12
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-11
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-12
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	5e-10
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	3e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	2e-04
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	9e-04
d1jofa_	365	b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz	0.004
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	0.004

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  176 bits (448), Expect = 8e-53
 Identities = 43/148 (29%), Positives = 79/148 (53%), Gaps = 1/148 (0%)

Query: 47  DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVA 106
            P++S     +   +  P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +++LV 
Sbjct: 1   QPDVSAVLSAY-NQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVY 59

Query: 107 KGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYS 166
             H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + S
Sbjct: 60  NQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 119

Query: 167 YELLLQYLHKTQSTKMLGIINERINFQV 194
           Y+LL ++L + Q+ ++  I+ E +   +
Sbjct: 120 YQLLKRHLQEKQNNQIWNIVQEHLYIDI 147

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

 Score =  169 bits (430), Expect = 2e-50
 Identities = 42/131 (32%), Positives = 82/131 (62%), Gaps = 1/131 (0%)

Query: 67  YQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEM 126
            +  Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH  
Sbjct: 2   METSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY- 60

Query: 127 MHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGII 186
               ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+
Sbjct: 61  NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKIL 120

Query: 187 NERINFQVSPG 197
           N+ ++ +V  G
Sbjct: 121 NQHLDIKVYVG 131

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  174 bits (440), Expect = 1e-49
 Identities = 73/307 (23%), Positives = 126/307 (41%), Gaps = 34/307 (11%)

Query: 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE--------- 395
           Y      + +         S++     D+++KVWD      +    G             
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 396 -----NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWST 450
                + +      +             GH   V S S  P GD I+S+S D TI++W  
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510
           +    +  + GH   V  V+ N  G   AS S+D+T R+W +   +    +  H   V+C
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 511 VRWHINCNYIA--------------------TGSSDKTVRLWDVSSGECVRIFIGHRSMI 550
           + W    +Y +                    +GS DKT+++WDVS+G C+   +GH + +
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610
             +     G+++ S  +D T+ +WD  + RC+  L  H   V +L +      + +GS D
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310

Query: 611 CTVKLWD 617
            TVK+W+
Sbjct: 311 QTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  156 bits (394), Expect = 3e-43
 Identities = 75/325 (23%), Positives = 125/325 (38%), Gaps = 79/325 (24%)

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
           P   ++ Y L  GH  PV    F P+   ++S+S D TI++W  +        KGH   V
Sbjct: 5   PRPPEK-YAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 467 WDVQ------------------------------------------FNPQGHYFASSSHD 484
            D+                                             P G +  S+S D
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544
           +T ++W +     ++   GH   V  VR + +   IA+ S+D+TVR+W V++ EC     
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 545 GHRSMILSLA--------------------MSPDGRYMASGDEDGTIMMWDLASGRCVTP 584
            HR ++  ++                        G ++ SG  D TI MWD+++G C+  
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT 644
           L+GH + V  + +   G  + S + D T+++WD      +               KTL  
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---------------KTLNA 287

Query: 645 KSTPVYSLQFSRRNLLFAAGALSKT 669
               V SL F +       G++ +T
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQT 312

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  163 bits (413), Expect = 5e-48
 Identities = 45/134 (33%), Positives = 80/134 (59%), Gaps = 4/134 (2%)

Query: 64  PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED 123
           P  Y   YS L++W  SSL++YK EL +++YP+FI+ F++LVAK     AR FF+ F  D
Sbjct: 1   PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPD 59

Query: 124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---T 180
            +  H  ++ +L  V S  H++E E A + +  K  I + + +  LLL +L++ +S   +
Sbjct: 60  FKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGS 119

Query: 181 KMLGIINERINFQV 194
            ++ +IN+ ++  +
Sbjct: 120 LIISVINQHLDPNI 133

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  141 bits (356), Expect = 8e-38
 Identities = 61/285 (21%), Positives = 104/285 (36%), Gaps = 19/285 (6%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE---------------- 395
             +       D  L+     D  L +WD     +                          
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115

Query: 396 -NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA 454
             D       +         +          S       + I++SS DTT  LW  +   
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175

Query: 455 NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH 514
               + GH   V  +   P    F S + D +A++W +      +   GH SD++ + + 
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235

Query: 515 INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIM 572
            N N  ATGS D T RL+D+ + + +  +     +  I S++ S  GR + +G +D    
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 573 MWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           +WD         L GH + V  L  + +G  +A+GS D  +K+W+
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  139 bits (349), Expect = 6e-37
 Identities = 57/320 (17%), Positives = 100/320 (31%), Gaps = 63/320 (19%)

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL 456
             T   D +G    +   TL +GH   +Y+  +      ++S+S D  + +W +     +
Sbjct: 32  QITNNIDPVGRIQMRTRRTL-RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSS---------------------------------- 482
                 +  V    + P G+Y A                                     
Sbjct: 91  HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150

Query: 483 -----------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL 531
                       D T  +W ++  Q      GH  DV  +    +     +G+ D + +L
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210

Query: 532 WDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI--MMWDLASGRCVTPLMGHT 589
           WDV  G C + F GH S I ++   P+G   A+G +D T                     
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270

Query: 590 SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV 649
             + ++++S  G LL +G  D    +WD   + +                  L      V
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA---------------GVLAGHDNRV 315

Query: 650 YSLQFSRRNLLFAAGALSKT 669
             L  +   +  A G+    
Sbjct: 316 SCLGVTDDGMAVATGSWDSF 335

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 62/234 (26%)

Query: 483 HDRTARIWSMDRIQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV 540
              T  I  + RIQ    R + GHL+ +  + W  +   + + S D  + +WD  +   V
Sbjct: 31  SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90

Query: 541 RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS---------------------- 578
                  S +++ A +P G Y+A G  D    +++L +                      
Sbjct: 91  HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150

Query: 579 -----------------------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615
                                  G+  T   GHT  V +L+ + +  L  SG+ D + KL
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210

Query: 616 WDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
           WDV                     +T     + + ++ F      FA G+   T
Sbjct: 211 WDVREG---------------MCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  142 bits (358), Expect = 1e-37
 Identities = 65/331 (19%), Positives = 116/331 (35%), Gaps = 78/331 (23%)

Query: 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414
            C   S DG  +A G  + + +V+ ++     A  S     N           +    + 
Sbjct: 66  CCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAAN----------KDPENLNT 114

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSS---------------------------------- 440
           +        + S  FSP G F+ + +                                  
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174

Query: 441 --------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492
                    D T+R+W  +     +     +           G Y A+ S DR  R+W  
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234

Query: 493 DRIQ-------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE------- 538
           +                GH   V  V +  +   + +GS D++V+LW++ +         
Sbjct: 235 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294

Query: 539 -----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
                C   +IGH+  +LS+A + +  Y+ SG +D  ++ WD  SG  +  L GH + V 
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354

Query: 594 TLAY------SCEGSLLASGSADCTVKLWDV 618
           ++A         E ++ A+GS DC  ++W  
Sbjct: 355 SVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (290), Expect = 1e-28
 Identities = 59/276 (21%), Positives = 119/276 (43%), Gaps = 29/276 (10%)

Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTK------------------LNANLVCYK 460
            H+  V    FS  G+++ +   + T +++                      N N     
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520
             +  +  V F+P G + A+ + DR  RIW ++  + + I+ GH  D+  + +  + + +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580
            +GS D+TVR+WD+ +G+C         +        DG+Y+A+G  D  + +WD  +G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 581 CVTPLM-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT 633
            V  L        GH   V+++ ++ +G  + SGS D +VKLW++  +     ++  +  
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
                  T       V S+  ++ +    +G+  + 
Sbjct: 299 TCEV---TYIGHKDFVLSVATTQNDEYILSGSKDRG 331

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.5 bits (233), Expect = 2e-21
 Identities = 59/281 (20%), Positives = 111/281 (39%), Gaps = 34/281 (12%)

Query: 414 YTLYQGHSGPVYSASFSPLGD---FILSSSADTTIRLWSTK----LNANLVCYKGHNYPV 466
           Y     HS P+               L    +    L++      ++  L     H   V
Sbjct: 6   YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 65

Query: 467 WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG------------------HLSDV 508
             V+F+  G Y A+   ++T +++ +     +  ++                       +
Sbjct: 66  CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124

Query: 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568
             V +  +  ++ATG+ D+ +R+WD+ + + V I  GH   I SL   P G  + SG  D
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184

Query: 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628
            T+ +WDL +G+C   L              +G  +A+GS D  V++WD  T   V + +
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244

Query: 629 EKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
            ++        ++       VYS+ F+R      +G+L ++
Sbjct: 245 SEN--------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (200), Expect = 3e-17
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
           +     + +     ++DG  V  G  D S+K+W++     ++ S                
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT----- 303

Query: 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP 465
                      Y GH   V S + +   ++ILS S D  +  W  K    L+  +GH   
Sbjct: 304 -----------YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352

Query: 466 VWDV------QFNPQGHYFASSSHDRTARIWSMDRI 495
           V  V         P+ + FA+ S D  ARIW   +I
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (307), Expect = 3e-31
 Identities = 77/333 (23%), Positives = 131/333 (39%), Gaps = 78/333 (23%)

Query: 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW 467
            G  +S  + +GH   V +      G+ I+S S D T+++WS      L    GH   VW
Sbjct: 3   RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61

Query: 468 DVQFNP--------------------------------------QGHYFASSSHDRTARI 489
             Q                                               S S D T R+
Sbjct: 62  SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121

Query: 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM 549
           W ++  Q L ++ GH++ V CV++      + +G+ D  V++WD  +  C+    GH + 
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609
           + S  +  DG ++ SG  D +I +WD+ +G C+  L GH S    +      ++L SG+A
Sbjct: 180 VYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA 235

Query: 610 DCTVKLWDVTTSTKVLKTEEKS----------------------GTNRL------RSLKT 641
           D TVK+WD+ T   +   +  +                      GT +L        ++ 
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295

Query: 642 LPTKST-----PVYSLQFSRRNLLFAAGALSKT 669
           L T  +      V+ ++ S   L+ A G+ + T
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (284), Expect = 3e-28
 Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493
             ++S + D  +++W  +    L   +GH   V+ +QF+  G +  S S D + R+W ++
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVE 205

Query: 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILS 552
               +  + GH S    +      N + +G++D TV++WD+ +G+C++     ++     
Sbjct: 206 TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 263

Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYSCEGSLLASG 607
             +  +  ++ +  +DGT+ +WDL +G  +  L+     G    VW +  S    + A G
Sbjct: 264 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323

Query: 608 SADCT----VKLWD 617
           S + T    + + D
Sbjct: 324 SRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (271), Expect = 2e-26
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 14/170 (8%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            QGH+  VYS  F   G  ++S S DT+IR+W  +    +    GH      ++     +
Sbjct: 173 LQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--N 228

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVS 535
              S + D T +IW +   Q L+ + G       V     N N++ T S D TV+LWD+ 
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 536 SGECVRIFI-----GHRSMILSLAMSPDGRYMASGDEDGT----IMMWDL 576
           +GE +R  +     G   ++  +  S      A G  +GT    +++ D 
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 5e-17
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM 549
           W    ++  +++ GH   V         N I +GS D T+++W   +G+C+R  +GH   
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609
           + S  M  +     S D    +   +            +               + SGS 
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAE----TGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115

Query: 610 DCTVKLWD 617
           D T+++WD
Sbjct: 116 DATLRVWD 123

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 3e-30
 Identities = 64/294 (21%), Positives = 113/294 (38%), Gaps = 28/294 (9%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE-------- 395
            +    T  G+ C  +  D   +  G  D+++K+WD   L  + + +G  G         
Sbjct: 8   IHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 396 --NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN 453
               T   +  +          L                   +++ S D +I +W     
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 454 ANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
            ++   +            +    Y  S+S DRT ++W+    + +R + GH   + C  
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-- 183

Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
                  + +GSSD T+RLWD+  G C+R+  GH    L   +  D + + SG  DG I 
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIK 241

Query: 573 MWDLASG---------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617
           +WDL +           C+  L+ H+  V+ L +      + S S D T+ +WD
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (263), Expect = 6e-26
 Identities = 59/281 (20%), Positives = 96/281 (34%), Gaps = 51/281 (18%)

Query: 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---- 474
             S  VY   +      I+S   D TI++W            GH   V  +Q++ +    
Sbjct: 13  ETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70

Query: 475 ----------------------------------GHYFASSSHDRTARIWSMDRIQPL-R 499
                                                  + S DR+  +W M     +  
Sbjct: 71  GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130

Query: 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559
                           +  YI + S D+T+++W+ S+ E VR   GH+  I    +    
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC--LQYRD 188

Query: 560 RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
           R + SG  D TI +WD+  G C+  L GH   V       +   + SG+ D  +K+WD+ 
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLV 246

Query: 620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL 660
            +                 L+TL   S  V+ LQF    ++
Sbjct: 247 AALDPRAPAGT------LCLRTLVEHSGRVFRLQFDEFQIV 281

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (212), Expect = 3e-19
 Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 47/210 (22%)

Query: 456 LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515
           + C    +  V+ +Q++       S   D T +IW  + ++  RI+ GH   V C+++  
Sbjct: 8   IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 516 N--------------------------------------CNYIATGSSDKTVRLWDVSSG 537
                                                     + T S D+++ +WD++S 
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 538 ECV---RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594
             +   R+ +GHR+ +  +         ASG  D TI +W+ ++   V  L GH   +  
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 595 LAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
           L Y     L+ SGS+D T++LWD+     +
Sbjct: 184 LQYR--DRLVVSGSSDNTIRLWDIECGACL 211

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 9e-13
 Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 6/130 (4%)

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554
           +Q +   +     V C+++  +   I +G  D T+++WD ++ EC RI  GH   +L   
Sbjct: 5   LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC-- 60

Query: 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614
           +  D R + +G  D T+ +WD+ +G  +  L+ H   V  L ++       + S D ++ 
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM--VTCSKDRSIA 118

Query: 615 LWDVTTSTKV 624
           +WD+ + T +
Sbjct: 119 VWDMASPTDI 128

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (282), Expect = 7e-28
 Identities = 52/324 (16%), Positives = 105/324 (32%), Gaps = 53/324 (16%)

Query: 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402
           ++++F+     ++C + ++D + +A   ++  + +++ +                     
Sbjct: 1   AYHSFL--VEPISCHAWNKDRTQIAICPNNHEVHIYEKS--------------------- 37

Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH 462
                  +       + H+G V    ++P  + I++   D    +W+ K           
Sbjct: 38  -----GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92

Query: 463 NY--PVWDVQFNPQGHYFASSSHDRTARIWSM----DRIQPLRIMAGHLSDVDCVRWHIN 516
                   V++ P    FA  S  R   I       D      I     S V  + WH N
Sbjct: 93  RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152

Query: 517 CNYIATGSSDKTVRLWDVSSGE------------------CVRIFIGHRSMILSLAMSPD 558
              +A GS D   R++     E                   +         +  +  S +
Sbjct: 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212

Query: 559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
           G  +A    D T+ + D      V  L   T  +  + +  E SL+A+G  DC   L+  
Sbjct: 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTY 271

Query: 619 TTSTKVLKTEEKSGTNRLRSLKTL 642
            ++   L    +    +  S + L
Sbjct: 272 DSAAGKLSFGGRLDVPKQSSQRGL 295

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.6 bits (215), Expect = 3e-19
 Identities = 45/319 (14%), Positives = 84/319 (26%), Gaps = 45/319 (14%)

Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE------- 402
           HNG +     + D + +    +D +  VW +     +     L+                
Sbjct: 50  HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109

Query: 403 -------------DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS 449
                             N       + +     V S  + P    + + S D   R++S
Sbjct: 110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169

Query: 450 TKLNANLVCY------------------KGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491
             +                               V  V F+  G   A  SHD T  +  
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 229

Query: 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551
            D+   +  +A     +  V +    + +A G       L+   S      F G   +  
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFP-VLFTYDSAAGKLSFGGRLDVPK 288

Query: 552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG----SLLASG 607
             +           + D        ++         H + V  ++    G    S   + 
Sbjct: 289 QSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347

Query: 608 SADCTVKLWDVTTSTKVLK 626
             D  + +WDV +    LK
Sbjct: 348 GMDGGMSIWDVRSLESALK 366

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 6/82 (7%), Positives = 25/82 (30%), Gaps = 13/82 (15%)

Query: 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST 647
               +   A++ + + +A    +  V +++ +              N+   +  L   + 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-------------GNKWVQVHELKEHNG 52

Query: 648 PVYSLQFSRRNLLFAAGALSKT 669
            V  + ++  +         + 
Sbjct: 53  QVTGVDWAPDSNRIVTCGTDRN 74

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 6e-27
 Identities = 48/309 (15%), Positives = 85/309 (27%), Gaps = 67/309 (21%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
             +   +IS     V  G     +KVWD++                          N   
Sbjct: 52  EVVCAVTISNPTRHVYTG-GKGCVKVWDISH-----------------------PGNKSP 87

Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDV 469
            S          + S    P G  ++        +I   +                 + +
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +P      S   D    +W +     +R   GH     C+    +   + TG  D TV
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207

Query: 530 RLWDVSSGECVR----------------------------------------IFIGHRSM 549
           R WD+  G  ++                                            H S 
Sbjct: 208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609
           +LSL  +  G++  S  +D  +  W    G  +      +S V +   S +   + +GS 
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSG 326

Query: 610 DCTVKLWDV 618
           D    +++V
Sbjct: 327 DKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 5e-12
 Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 10/205 (4%)

Query: 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478
            S P YS   +  G    +    D  I     + +A  +    H   V  V  +    + 
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTLNHGEVVCAVTISNPTRHV 66

Query: 479 ASSSHDRTARIWSMD-----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
            +       ++W +                  + +   +   +   +  G    T+ +WD
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

Query: 534 VSSGECVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
           +++           S     +LA+SPD +   S   DG I +WDL +   V    GHT  
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185

Query: 592 VWTLAYSCEGSLLASGSADCTVKLW 616
              +  S +G+ L +G  D TV+ W
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSW 210

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.7 bits (236), Expect = 5e-22
 Identities = 29/270 (10%), Positives = 72/270 (26%), Gaps = 15/270 (5%)

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLW---STKLNANLVCYKGHNYPVWDVQF 471
            + Q     +      P    +L +S D ++ ++       N +L+    + +P+    F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 472 NPQG--HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
                   +  +      ++  +       +     +   C       + +   S D  +
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 530 RLWDVSSGECVRIFIGHRS------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583
            + D  +     I + + +            M  +   +  G  +  +  + L       
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 584 PLMGHTS----CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL 639
             +  +              E    A  S D  V +           + ++      R  
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244

Query: 640 KTLPTKSTPVYSLQFSRRNLLFAAGALSKT 669
                 + PV S++FS R+           
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.3 bits (222), Expect = 4e-20
 Identities = 34/322 (10%), Positives = 74/322 (22%), Gaps = 45/322 (13%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
           + ++   I    SL+     D SL V+      +                 + I     +
Sbjct: 12  DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ 71

Query: 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ- 470
                 QG    V             + +     R+     +  +         V D + 
Sbjct: 72  IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN 131

Query: 471 ------------------------FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506
                                    +          ++   + + +   +          
Sbjct: 132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG 191

Query: 507 DVDCVRWHINC----NYIATGSSDKTVRLWDVSSGECV---------------RIFIGHR 547
               +R            A  S D  V +                               
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA 251

Query: 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG 607
             + S+  SP  +++ +   DG I  W+L + + +       +    +  +C  ++L   
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLA 310

Query: 608 SADCTVKLWDVTTSTKVLKTEE 629
           ++D T K       T  L    
Sbjct: 311 TSDDTFKTNAAIDQTIELNASS 332

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.1 bits (211), Expect = 7e-19
 Identities = 15/182 (8%), Positives = 48/182 (26%), Gaps = 24/182 (13%)

Query: 433 GDFILSSSADTTIRLWS----TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488
              ++    ++ ++ +        N  +                 +   +A SS D    
Sbjct: 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219

Query: 489 IWSMD---------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD 533
           +   D                 +           V+ + +     ++ T  SD  +  W+
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279

Query: 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
           + + + ++ F         + ++     +     D T              +  + S ++
Sbjct: 280 LQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIY 334

Query: 594 TL 595
            +
Sbjct: 335 II 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 3e-12
 Identities = 9/87 (10%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL---MGHTSCVWT 594
           + V+I    +  I  + + P    +     DG++ ++          L   + +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 595 LAYSC-EGSLLASGSADCTVKLWDVTT 620
             +       +  G+    +   D+  
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 3e-12
 Identities = 11/103 (10%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMIL 551
           +Q ++I       +  ++   + + +   S D ++ ++          +   + ++  +L
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 552 SLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW 593
                 +    +  G   G I+  DL        L  + + + 
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG 103

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 6e-12
 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 20/166 (12%)

Query: 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS------------- 449
            +        +             A      +    SS D  + +               
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

Query: 450 --TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507
              + +   +      YPV  ++F+P+  +  ++  D     W++   + ++  A    D
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295

Query: 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553
              V+   + N +   +SD T +          +    + S I  +
Sbjct: 296 S-VVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIYII 336

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 94.9 bits (234), Expect = 1e-21
 Identities = 26/331 (7%), Positives = 67/331 (20%), Gaps = 49/331 (14%)

Query: 348 INTHNGLNCASISQDGSLVA--GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
           +     +       D  +    G      L ++D      +     L          +  
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 98

Query: 406 GPNGRKRSYTLYQ-----------------------GHSGPVYSASFSPLGDFILSSSAD 442
                   + +                               + A   PL          
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW-------SMDRI 495
             I ++  +           N   +   F+         S+              S + +
Sbjct: 159 QAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLW-------DVSSGECVRIFIGHRS 548
               ++       +  +          G  D             D      +        
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS 608
           +           Y     E G ++ +D+ + +    +    + +  L  S +   +    
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRK 333

Query: 609 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL 639
            D  +  + +         +E++     R L
Sbjct: 334 DDGKIYTFPLEK-----PEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 74.9 bits (182), Expect = 5e-15
 Identities = 32/257 (12%), Positives = 70/257 (27%), Gaps = 22/257 (8%)

Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483
            ++  FSPL   +++  +     +    ++   V        +  V+             
Sbjct: 5   KFAEDFSPLDGDLIAFVSRGQAFIQD--VSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGT 62

Query: 484 DRTARIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI 542
                +   D R         +L +V  +    N  +    +    +   D+ +G+   I
Sbjct: 63  REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 543 FIGHRSMILSLAMSPDGRYMASGD----------EDGTIMMWDLASGRCVTPLMGHTSCV 592
                +MI    +S + R++A G               I ++D+   +         S  
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHD 181

Query: 593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 652
           +  A+  +   L   S        D        +   K           +P         
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK--------PFVIPLIPGSPNPT 233

Query: 653 QFSRRNLLFAAGALSKT 669
           +   R++   AG     
Sbjct: 234 KLVPRSMTSEAGEYDLN 250

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.6 bits (233), Expect = 2e-21
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 23/221 (10%)

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477
           +GH   V +       +++++ + D  IR++ +     L+   GH+  VW +++   G  
Sbjct: 9   RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
            + S+                     + +     +  + N  YI TGS D T+ +W +  
Sbjct: 68  VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127

Query: 537 GECVRIFIGHRSMILSLAMSPD---------------------GRYMASGDEDGTIMMWD 575
              V          L      +                     G  + SG  D T+++WD
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD 187

Query: 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
           +A  +C+  L GHT  +++  Y  E     S S D T+++W
Sbjct: 188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.7 bits (210), Expect = 1e-18
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 496 QPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554
            P R  + GH++ V         NY+ TG+ DK +R++D  + + +    GH   + +L 
Sbjct: 2   VPQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60

Query: 555 MSPDGR-YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV 613
            +  G     S D    +          V      T     +        + +GS D T+
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120

Query: 614 KLWDVTTSTKVLKTEEK 630
            +W +   + V    E+
Sbjct: 121 HVWKLPKESSVPDHGEE 137

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.2 bits (206), Expect = 4e-18
 Identities = 45/256 (17%), Positives = 90/256 (35%), Gaps = 13/256 (5%)

Query: 367 AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426
             G  D++L VW + K              +         P        + +GH   V +
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGE-----EHDYPLVFHTPEENPYFVGVLRGHMASVRT 166

Query: 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486
              S  G+ ++S S D T+ +W       L    GH   ++   ++ +     S+S D T
Sbjct: 167 --VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

Query: 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
            RIW ++  + +  + GH + V  +R        A           +       +    H
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND---YSRKFSYHH 281

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLA 605
            ++            + SG  +    +++L SG+ V   ++     +W++ +  +  L+A
Sbjct: 282 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVA 339

Query: 606 SGSADCTVKLWDVTTS 621
           +   D    L  +  S
Sbjct: 340 AVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.8 bits (179), Expect = 1e-14
 Identities = 50/350 (14%), Positives = 109/350 (31%), Gaps = 54/350 (15%)

Query: 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE--------------- 395
           H       +  + + V  G  D  ++V+D          SG  G                
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG 70

Query: 396 NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN 455
           +            G           +             +I++ S D T+ +W     ++
Sbjct: 71  STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130

Query: 456 LVCYKGHNYPVWDV---------------------QFNPQGHYFASSSHDRTARIWSMDR 494
           +  +   +                             +  G+   S S+D T  +W + +
Sbjct: 131 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 190

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554
           ++ L I++GH   +    +        + S D T+R+WD+ +GE +    GH +++  L 
Sbjct: 191 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 250

Query: 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614
           +S      A+ D        +            HT+      +    ++L SGS +    
Sbjct: 251 LSDKFLVSAAADGSIRGWDAN---DYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFN 306

Query: 615 LWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAG 664
           ++++ +   V                 +   +  ++S+ F  + L+ A  
Sbjct: 307 IYNLRSGKLV--------------HANILKDADQIWSVNFKGKTLVAAVE 342

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 16/82 (19%)

Query: 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 642
           T L GH + V T     E + + +G+ D  ++++D                   + L  L
Sbjct: 6   TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINK---------------KFLLQL 49

Query: 643 PTKSTPVYSLQFSRRNLLFAAG 664
                 V++L+++   +L +  
Sbjct: 50  SGHDGGVWALKYAHGGILVSGS 71

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 10/105 (9%), Positives = 28/105 (26%), Gaps = 29/105 (27%)

Query: 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403
                +  N     +     +++  G S++   +++        + SG            
Sbjct: 275 RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN--------LRSG------------ 313

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLW 448
                  K  +      +  ++S +F      + +   D    L 
Sbjct: 314 -------KLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.0 bits (229), Expect = 7e-21
 Identities = 39/310 (12%), Positives = 91/310 (29%), Gaps = 60/310 (19%)

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL------NANLVCYKGHNYPVWD 468
              + H   ++S S      F +S S D  +++W  KL            +  H   +  
Sbjct: 8   NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 469 VQF-------NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH------- 514
           V           +    A++S       + + R    + +     D+             
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 515 --------INCNYIATGSSDKTVRLWDVSSGE------------------CVRIFIGHRS 548
                   +  + +       T  +W                         V   +    
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 549 MILSLAMSPDGRYMASGDEDGTIM------MWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602
              S+ +S  G  +A+G  +GT+       +  L +      ++ +++ + ++ +S +GS
Sbjct: 186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 603 LLASGSAD---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL 659
           LLA          + L++     ++      + +++          S+ V SL F+    
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA--SLGEFAHSSWVMSLSFNDSGE 302

Query: 660 LFAAGALSKT 669
              +      
Sbjct: 303 TLCSAGWDGK 312

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.8 bits (226), Expect = 2e-20
 Identities = 40/329 (12%), Positives = 94/329 (28%), Gaps = 74/329 (22%)

Query: 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414
                + +  LVA       L  + + +  +       + +   +               
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS--------------- 115

Query: 415 TLYQGHSGPVYSASFSPLGD-----FILSSSADTTIRLWST------------------K 451
                     ++  +    D      ++++    T  +W                    +
Sbjct: 116 ---DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172

Query: 452 LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS------MDRIQPLRIMAGHL 505
           L   +      +     V  + +G   A+  ++ T +I        +   +    M  + 
Sbjct: 173 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231

Query: 506 SDVDCVRWHINCNYIATGSSDKTV---RLWD-------------VSSGECVRIFIGHRSM 549
           + +  V++    + +A      +     L++               S +       H S 
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV----WTLAYSCEGSLLA 605
           ++SL+ +  G  + S   DG +  WD+ +   +T L  H   +      LA    G  LA
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351

Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKSGTN 634
                    ++DV    K  ++   +  N
Sbjct: 352 EPG------VFDVKFLKKGWRSGMGADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.4 bits (212), Expect = 9e-19
 Identities = 44/322 (13%), Positives = 86/322 (26%), Gaps = 71/322 (22%)

Query: 358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           S+S   S       D  LKVWD               +N+    +       +   + + 
Sbjct: 19  SVSACNSFTVSCSGDGYLKVWDNK-----------LLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP----------VW 467
              +        +     + ++S    +  +                            W
Sbjct: 68  VLQAIE----RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 468 DVQFNPQG-----HYFASSSHDRTARIWSMDRIQP------------------LRIMAGH 504
            +++         H   ++    T  IW                         +      
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 505 LSDVDCVRWHINCNYIATGSSDKTVRL------WDVSSGECVRIFIGHRSMILSLAMSPD 558
                 V        IATG ++ TV++        + + E     I + + I S+  SP 
Sbjct: 184 SQFATSVDIS-ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242

Query: 559 GRYMASGDEDGTIMMW----------------DLASGRCVTPLMGHTSCVWTLAYSCEGS 602
           G  +A   +  +                       S +       H+S V +L+++  G 
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 603 LLASGSADCTVKLWDVTTSTKV 624
            L S   D  ++ WDV T  ++
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERI 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.0 bits (203), Expect = 1e-17
 Identities = 35/279 (12%), Positives = 74/279 (26%), Gaps = 52/279 (18%)

Query: 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423
             +       +  +W       +            +   +       + +       S  
Sbjct: 137 HRLVATDVKGTTYIWKFHPFADE----------SNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY------KGHNYPVWDVQFNPQGHY 477
             S   S  G  I +   + T+++        L  +        ++  +  V+F+PQG  
Sbjct: 187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245

Query: 478 FASSSHDRTARIWSM----------------DRIQPLRIMAGHLSDVDCVRWHINCNYIA 521
            A +    +    ++                   Q       H S V  + ++ +   + 
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305

Query: 522 TGSSDKTVRLWDVSSGECVRIFIGHRSMI----LSLAMSPDGRYMASGDEDGTIMMWDLA 577
           +   D  +R WDV + E +     H   I      LA+   G  +A     G   +  L 
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP---GVFDVKFLK 362

Query: 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616
            G                        L     D +++ +
Sbjct: 363 KGWRSGMGADL------------NESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 1e-11
 Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 15/144 (10%)

Query: 539 CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM------GHTSCV 592
                  H + I S++      +  S   DG + +WD        P         H S +
Sbjct: 6   TANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 593 WTLA-------YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645
             +         + E  L+A+ S    +  + +T   +  K   +        +K     
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 646 STPVYSLQFSRRNLLFAAGALSKT 669
           +    +      +    A  +  T
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGT 147

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 19/133 (14%)

Query: 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466
           P    ++      HS  V S SF+  G+ + S+  D  +R W  K    +     H   +
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334

Query: 467 ----WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522
                 +  +  G   A         ++ +  ++                       +  
Sbjct: 335 EIEEDILAVDEHGDSLAEPG------VFDVKFLK---------KGWRSGMGADLNESLCC 379

Query: 523 GSSDKTVRLWDVS 535
              D+++R +  +
Sbjct: 380 VCLDRSIRWFREA 392

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 92.1 bits (227), Expect = 9e-21
 Identities = 39/309 (12%), Positives = 85/309 (27%), Gaps = 45/309 (14%)

Query: 348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMA--KLGQQAVSSGLQGENDTTPREDI 404
           +    G   A ++ D             +   D+   K    A  S + GE   +     
Sbjct: 36  MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 95

Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY 464
           I P+G++            VY+                  + ++ST         +    
Sbjct: 96  ISPDGKE------------VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM 143

Query: 465 P--VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG------------------- 503
           P  V+ ++    G  + +        + +      L +                      
Sbjct: 144 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP 203

Query: 504 ---HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIGHRSMILSLAMSPDG 559
                      R+  +    AT          D+ +G+   + F     +  +   SP  
Sbjct: 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263

Query: 560 RYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
                G     +  +DL   + +    + HT   + +A+  +G  L  G     + +++ 
Sbjct: 264 PNQIYGV-LNRLAKYDLKQRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAVFNP 320

Query: 619 TTSTKVLKT 627
            T  + +K 
Sbjct: 321 DTL-EKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 9/155 (5%)

Query: 519 YIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDL 576
           Y+   +    + + DV+S    +   +  +    +  M+PD R      +  G I   DL
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69

Query: 577 ASGRCVTPLM------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 630
            + +                 +++ A S +G  + +                  L+    
Sbjct: 70  DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 129

Query: 631 SGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
           +     + ++T P     VY ++ +    L+ AG 
Sbjct: 130 ADGLEAKPVRTFPMPR-QVYLMRAADDGSLYVAGP 163

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 14/244 (5%), Positives = 46/244 (18%), Gaps = 44/244 (18%)

Query: 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHY-FASSSHDR 485
           +     ++++ ++    + +     +           +        P     +  ++H  
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 486 TARIWSMDR------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
                 +D            +       +       +   +    +              
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 540 VRIFIGHRSM----ILSLAMSPDGRYMASGDEDGTIMM-------WDLASGRCVTPLMGH 588
                          +     P   Y+    +DG++ +        D+ +G+    L   
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR 182

Query: 589 --------TSCVWTLAYSCEGS-----------------LLASGSADCTVKLWDVTTSTK 623
                      V                             A+          D+ T   
Sbjct: 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT 242

Query: 624 VLKT 627
             + 
Sbjct: 243 HTQE 246

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 16/171 (9%), Positives = 45/171 (26%), Gaps = 22/171 (12%)

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYI-ATGSSD 526
                   Y   +++     +  +      +  +              +        +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 527 KTVRLWDVSSGECVRIF------IGHRSMILSLAMSPDGRYMASGDED------------ 568
             +   D+ + +                 + S A+SPDG+ + +                
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 569 GTIMMWDLASGRCVTPLMGHTSC--VWTLAYSCEGSLLASGSADCTVKLWD 617
             + ++  A G    P+        V+ +  + +GSL  +G     + +  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 553 LAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGS-LLASGSAD 610
            A+     YM   +    + + D+AS     + +M       T   + +        +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 611 CTVKLWDV 618
             +   D+
Sbjct: 62  GDIYGIDL 69

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 89.6 bits (220), Expect = 3e-20
 Identities = 49/336 (14%), Positives = 87/336 (25%), Gaps = 91/336 (27%)

Query: 337 AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN 396
            +LP                   +  G  +    + +S+    +  L    +        
Sbjct: 10  PSLPRT-------ARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEI-------- 53

Query: 397 DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRL--WSTKLNA 454
                               Y  HS     A  SP G +  S      +R+   +   + 
Sbjct: 54  --------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93

Query: 455 NLVCYKGHNYPV---------------------------------------------WDV 469
                   + PV                                                
Sbjct: 94  LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
               +     S S D T  I+     +       H   V  VR++ + +  A+   D T+
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213

Query: 530 RLWDVSSGECVRI-------FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582
            L++   G    +        + H   +  L  SPDG  +AS   D TI +W++A+ +  
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273

Query: 583 TPLMGHTSC-VWTLAYSCEGSLLASGSADCTVKLWD 617
             +   T      L        L S SA+  +   +
Sbjct: 274 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 76.1 bits (185), Expect = 1e-15
 Identities = 50/260 (19%), Positives = 80/260 (30%), Gaps = 56/260 (21%)

Query: 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481
           G       +P GD I   +  T++         +   Y  H++     + +P G+Y AS 
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 482 SHDRTARIW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
                 RIW  +         +      V  + W      IA     +            
Sbjct: 77  DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136

Query: 540 VRIFIGHRSMI---------------------------------------------LSLA 554
                                                                    S+ 
Sbjct: 137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 196

Query: 555 MSPDGRYMASGDEDGTIMMWDLASGRCVT-------PLMGHTSCVWTLAYSCEGSLLASG 607
            +PDG   AS   DGTI++++   G             + H+  V+ L +S +G+ +AS 
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256

Query: 608 SADCTVKLWDVTTSTKVLKT 627
           SAD T+K+W+V T  KV KT
Sbjct: 257 SADKTIKIWNVATL-KVEKT 275

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.7 bits (184), Expect = 2e-15
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 1/120 (0%)

Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC 517
                 Y      F   G       ++      +            H   V  + W  + 
Sbjct: 191 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576
             IA+ S+DKT+++W+V++ +  +   +G R     L +    + + S   +G I   + 
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYF 478
           HSG V+  ++SP G  I S+SAD TI++W+                    +         
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 479 ASSSHDRTARIWSMD 493
            S S +      + +
Sbjct: 297 VSISANGFINFVNPE 311

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.9 bits (213), Expect = 3e-19
 Identities = 38/297 (12%), Positives = 73/297 (24%), Gaps = 69/297 (23%)

Query: 387 AVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTT 444
           A   G         R    G +            S  V +  FSP+    ++ S      
Sbjct: 33  AYPCG----KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 88

Query: 445 IRLWSTKLNANLV--------CYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDR 494
           + +W    +             ++    P+ D+ ++ +G          D      S D 
Sbjct: 89  VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 148

Query: 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVR----LWDVSSGECVRIFIGHRSMI 550
              L  ++GH   ++      +    +    D                  R      S +
Sbjct: 149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 208

Query: 551 LSLAMSP----------------------------------------------DGRYMAS 564
             +  SP                                              D +  A+
Sbjct: 209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT 268

Query: 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC---EGSLLASGSADCTVKLWDV 618
              D TI +WD+ + +CV         +              + S S D T+  +++
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 85.4 bits (209), Expect = 9e-19
 Identities = 35/289 (12%), Positives = 78/289 (26%), Gaps = 21/289 (7%)

Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE-------------- 395
           HN  +   S S DG  +    ++  +  WD++      V   +                 
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 396 ---NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452
               D   +    G +G   S  +    S      + S  GD  +++     I ++S   
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK 129

Query: 453 NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
              +      +                 S         +        +    ++ V    
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572
                             + +         +  H + +  ++ SPD   +A+G  D +++
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 573 MWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619
           +W++       +     H             + + S   D  +K W+V 
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 76.2 bits (185), Expect = 1e-15
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV-TPLMGHTSCVWTL 595
           G   ++  GH   I +L+ S DG+ + S D +G I  WD+++G         H + +  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 596 AYSCEGSLLASGSADCTVKLWDVTTS 621
             + +G L      D  +K+     S
Sbjct: 62  KTTSKGDLFTVSW-DDHLKVVPAGGS 86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.6 bits (173), Expect = 3e-14
 Identities = 32/293 (10%), Positives = 69/293 (23%), Gaps = 56/293 (19%)

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG 475
             GH+  + + S S  G  + S+ A+  I  W      +  V    H   +  ++   +G
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 476 HYFASSSHDRTARIW------------------SMDRIQPLRIMAGHLSDVDCVRWHINC 517
             F  S  D    +                       +         ++         + 
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577
             +             +S+ +      G  S +    +S               +     
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187

Query: 578 SGRCVTPLMGHTSCVWTLAYSCEG-------------------------SLLASGSADCT 612
           S      +    S                                      LA+GS D +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 613 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
           V +W++   +      + +               + V S+ +     + +AG 
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAM------------SSVNSVIWLNETTIVSAGQ 288

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.0 bits (169), Expect = 1e-13
 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMS 556
            ++  GH   +  +    +   + +  ++  +  WD+S+G   R+F   H +MI  +  +
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
             G       +D   ++    SG   +  + +      L  + 
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.2 bits (141), Expect = 3e-10
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638
           G       GH   +  L+ S +G  L S  A+  +  WD++T     +         +  
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITG 60

Query: 639 LK 640
           +K
Sbjct: 61  IK 62

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 85.2 bits (209), Expect = 1e-18
 Identities = 28/277 (10%), Positives = 65/277 (23%), Gaps = 14/277 (5%)

Query: 359 ISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417
           ++  G    A      SL   D+              E               K      
Sbjct: 41  VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100

Query: 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---------KGHNYPVWD 468
                 +      P    +  +   +  + +       ++ +          G +  V D
Sbjct: 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMD 160

Query: 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT 528
            +           S +              +  +  +          + +     +    
Sbjct: 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220

Query: 529 VRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587
           +   D+ +GE              S A++P             +  +DL     +  +  
Sbjct: 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKNASIKRV-P 277

Query: 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
                +++  S +GS +  G A   +  +D  T  K 
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 79.1 bits (193), Expect = 2e-16
 Identities = 19/281 (6%), Positives = 57/281 (20%), Gaps = 33/281 (11%)

Query: 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405
             I+   G     I              +    D   L        L+  +       + 
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP 465
             +    S          +   +++  G  +     D  +          +      ++ 
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA--GTLVEDKPIQSWE 176

Query: 466 -----------------------VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-M 501
                                                 +++        ++  +     +
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236

Query: 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY 561
                       +          +   +  +D+     ++  +       S+ +S DG  
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIKR-VPLPHSYYSVNVSTDGST 293

Query: 562 MASGDEDGTIMMWDLASGRCV----TPLMGHTSCVWTLAYS 598
           +  G   G +  +D  +         P     S      ++
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFT 334

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 8/111 (7%)

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYM-ASGDEDGTIMMW 574
           +YI   +    + + D       ++          +   ++P GR   A+ ++  +++  
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 575 DLASGRCVTPLMGHTSCVWT-----LAYSCEGSLLASGSADCTVKLWDVTT 620
           DL +G  +  +   T           A S +G  LA   +   ++L     
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 9e-09
 Identities = 26/227 (11%), Positives = 59/227 (25%), Gaps = 21/227 (9%)

Query: 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYP--VWDVQFNPQGHY-FASSSHDRTARIW 490
           D+IL+ +    + +  T+  A        +           P G   +A+ +   +    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 491 SMDRIQPLRIMAGHLSDVDCVRWHI-----NCNYIATGSSDKTVRLWDVSSGEC------ 539
            +   + L  +     +             +   +A   S   + L              
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 540 -----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594
                 R        I  LA + DG  +     D  +M  +  +G  V      +    T
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE--AGTLVEDKPIQSWEAET 179

Query: 595 LAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKT 641
            A     ++     +   +     T    +   +  +    L ++  
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.5 bits (204), Expect = 3e-18
 Identities = 41/281 (14%), Positives = 83/281 (29%), Gaps = 19/281 (6%)

Query: 351 HNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409
           HN  +   +++    L++G   D  +  W  +    Q  S+ +   +++  +E       
Sbjct: 12  HNKGITALTVN---PLISGS-YDGRIMEWSSSS-MHQDHSNLIVSLDNSKAQEYSSISWD 66

Query: 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDV 469
                     H         S   D   +   +    L       +++     N P   V
Sbjct: 67  DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 470 QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529
             +           +        D      +     +    +    +  YIA G     +
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186

Query: 530 RLWDVSSGECVRIFIGHRSMI-----------LSLAMSPDGRYMASGDEDGTIMMWDLAS 578
            L+D+ S E        R+              +     +   +A+G  D  I ++ +  
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246

Query: 579 -GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618
             + +  L  H   V  L +    +L  S  AD  +K W+V
Sbjct: 247 PMKIIKALNAHKDGVNNLLWETPSTL-VSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.5 bits (186), Expect = 7e-16
 Identities = 46/300 (15%), Positives = 87/300 (29%), Gaps = 66/300 (22%)

Query: 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468
           G         GH+  + + + +PL    +S S D  I  WS+        ++ H+  +  
Sbjct: 1   GHDEVLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSS-----SMHQDHSNLIVS 51

Query: 469 VQFNPQGHYFASSSHDRTAR--------------------------------IWSMDRIQ 496
           +  +    Y + S  D                                    +       
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111

Query: 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556
            +       S    V    N   +     +               +    R+    +++S
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 171

Query: 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-----------TLAYSCEGSLLA 605
           P   Y+A+GD  G I+++DL S    T      +                    E  L+A
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 606 SGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGA 665
           +GS D  + ++ V    K+              +K L      V +L +   + L ++GA
Sbjct: 232 TGSLDTNIFIYSVKRPMKI--------------IKALNAHKDGVNNLLWETPSTLVSSGA 277

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 77.9 bits (190), Expect = 5e-16
 Identities = 31/337 (9%), Positives = 76/337 (22%), Gaps = 69/337 (20%)

Query: 333 HLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL 392
            +    LP+          +G   A  S   S +A G     ++V+D   L   A     
Sbjct: 43  MIDGGFLPNPVV-----ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 97

Query: 393 QGENDTT---PREDIIGPNGRKRSYTLYQG---------------------------HSG 422
                     P    + P+G+   +  +                              + 
Sbjct: 98  DAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA 157

Query: 423 PVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481
           P         G     +   + T  +  T++           + +    ++ +       
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWP 212

Query: 482 SHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC 539
           ++        +     + L  +           W                          
Sbjct: 213 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL------ 266

Query: 540 VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599
                                          +++ D  +G  +         + ++  S 
Sbjct: 267 ----------------VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQ 309

Query: 600 EGS--LLASGSADCTVKLWDVTTSTKVLKTEEKSGTN 634
           +    L A  + D T+ + D  +  + L++  + G  
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESG-EELRSVNQLGHG 345

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.9 bits (151), Expect = 4e-11
 Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 21/124 (16%)

Query: 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA----------SGDEDG 569
            A  ++     + D  +G  + +  G      +  ++ DG ++A           G+   
Sbjct: 21  PAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTD 78

Query: 570 TIMMWDLASGRCVTPLMGHTSC-------VWTLAYSCEGSLL--ASGSADCTVKLWDVTT 620
            + ++D  +      +    +         W  + + +G  L     S    V + D+  
Sbjct: 79  YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 138

Query: 621 STKV 624
               
Sbjct: 139 KAFK 142

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (132), Expect = 9e-09
 Identities = 22/221 (9%), Positives = 46/221 (20%), Gaps = 56/221 (25%)

Query: 422 GPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            P    + +P    +  +     +A T   +   +    +    G   P  +      G 
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS 59

Query: 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536
           + A +S   +                                 IA G     V ++D  +
Sbjct: 60  FIAHASTVFS--------------------------------RIARGERTDYVEVFDPVT 87

Query: 537 GECVRIFIGHRSMILSLAMSPDG---------RYMASGDEDGTIMMWDLASGRCVTPLMG 587
                      +    +   P                      + + DL        L  
Sbjct: 88  LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 147

Query: 588 HTSC-------VWTLAYSCEGSLLASGSA-DCTVKLWDVTT 620
                           +  +GSL       + T ++     
Sbjct: 148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 188

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 9e-09
 Identities = 16/169 (9%), Positives = 38/169 (22%), Gaps = 25/169 (14%)

Query: 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDV--- 469
             +      +   ++S     ++  +    I                +            
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247

Query: 470 -----------------QFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512
                                Q   +   +  R   +      + L        ++D + 
Sbjct: 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN 306

Query: 513 WHINCNY--IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559
              +      A  + DKT+ + D  SGE +R           +  +  G
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 75.0 bits (183), Expect = 4e-15
 Identities = 30/323 (9%), Positives = 73/323 (22%), Gaps = 59/323 (18%)

Query: 333 HLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL 392
           H   A L           H+G + A  S   +  A G     ++V+D             
Sbjct: 61  HSLGAFLSLAVA-----GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------- 106

Query: 393 QGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTK 451
                  P  DI  P+  +            V+          +L      +     S  
Sbjct: 107 ------LPIADIELPDAPR------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP 154

Query: 452 LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA------GHL 505
             ++    K  +                  S   +     +        +          
Sbjct: 155 GASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211

Query: 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565
                 + +     +   +S         +         G+ S   +      G  M + 
Sbjct: 212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271

Query: 566 DEDG-------------------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS--LL 604
            ++                           + G+   P+  +      +  + +G+    
Sbjct: 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNY 330

Query: 605 ASGSADCTVKLWDVTTSTKVLKT 627
           A+ +    + ++D  +  +   +
Sbjct: 331 ANSAGTEVLDIYDAASD-QDQSS 352

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.5 bits (177), Expect = 4e-14
 Identities = 24/250 (9%), Positives = 59/250 (23%), Gaps = 21/250 (8%)

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---- 459
           +I  +  +    L  G++  V+ +  S  G ++     D  + +    +           
Sbjct: 46  LIDGSTYEIKTVLDTGYA--VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103

Query: 460 -KGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVD-------- 509
                          +  Y  A +       I   + ++P +I +      D        
Sbjct: 104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 163

Query: 510 ----CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMAS 564
                +  H    +I        + L D +    ++   I     +    +    RY  +
Sbjct: 164 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFIT 223

Query: 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624
                  ++        +  +                     G    T  + D + +   
Sbjct: 224 AANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIG 283

Query: 625 LKTEEKSGTN 634
              E      
Sbjct: 284 TDPEGHPDNA 293

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 70.6 bits (172), Expect = 2e-13
 Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 10/153 (6%)

Query: 490 WSMDRIQPLR---IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
           + M  ++      +            W +   +  T      + L D S+ E   +    
Sbjct: 2   FGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG 61

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-----VTPLMGHTSCVWTLAYSCEG 601
              +    +S  GRY+     DG + M DL          +       S   +     E 
Sbjct: 62  -YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120

Query: 602 SLL-ASGSADCTVKLWDVTTSTKVLKTEEKSGT 633
               A         + D  T         +  T
Sbjct: 121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 40/330 (12%), Positives = 78/330 (23%), Gaps = 66/330 (20%)

Query: 346 TFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
                 +         +     AG +      + D   L  + + S        T  E  
Sbjct: 103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS----TRGMTYDEQE 158

Query: 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY 464
             P  R  +  +   H  P           FI++      I L       NL   +    
Sbjct: 159 YHPEPRVAA--ILASHYRPE----------FIVNVKETGKILLVDYTDLNNLKTTEISAE 206

Query: 465 PV-WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523
               D   +    YF ++++ R   +    +   L  +              N  +   G
Sbjct: 207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 266

Query: 524 SSDKTVRLWD--------------VSSGECVRIFIGHRSMILSLAMSPDGRYM------- 562
               T  + D               ++ + +  F       L +   P+ +Y+       
Sbjct: 267 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326

Query: 563 -----------------ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG---- 601
                                 D       +A       +      V    ++ +G    
Sbjct: 327 PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVW 383

Query: 602 -SLLASGSADCTVKLWDVTTSTKVLKTEEK 630
            S+      +  + + D    T  LK   K
Sbjct: 384 FSVWNGKDQESALVVVD--DKTLELKHVIK 411

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 67.3 bits (163), Expect = 2e-12
 Identities = 21/176 (11%), Positives = 46/176 (26%), Gaps = 9/176 (5%)

Query: 490 WSMDRIQP---LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546
           W M  ++    + +              +   +  T      + L D  S + V++    
Sbjct: 2   WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG 61

Query: 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-----VTPLMGHTSCVWTLAYSCEG 601
            + +    MS  GRY+     D  I M DL +        +   +   S   +     E 
Sbjct: 62  YA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED 120

Query: 602 SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR 657
               +G+            + +  +     G            +   + +      
Sbjct: 121 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 176

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 62.7 bits (151), Expect = 6e-11
 Identities = 28/227 (12%), Positives = 57/227 (25%), Gaps = 8/227 (3%)

Query: 435 FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD- 493
           F ++      I L        +             + +  G Y      D    +  +  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWA 92

Query: 494 ----RIQPLRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRS 548
               ++  ++I     S            Y IA         + D  + E  +I      
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 549 MILSLAMSPDGR-YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG 607
            + +    P+ R        +    + ++     V  +        T+        LA G
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

Query: 608 SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQF 654
             D + + +    +         S   RL +L  +     P     F
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 59.6 bits (143), Expect = 6e-10
 Identities = 36/340 (10%), Positives = 90/340 (26%), Gaps = 67/340 (19%)

Query: 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN----------- 396
           I+T   ++ + +S  G  +     D+ + + D+       V+    G             
Sbjct: 58  IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 117

Query: 397 ---------DTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG------------DF 435
                       P +  I          +       V + ++ P              +F
Sbjct: 118 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 177

Query: 436 ILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD- 493
           I++      + L + K   NL     G    + D  ++    YF +++++          
Sbjct: 178 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237

Query: 494 -----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV-------RLWDVSSGECVR 541
                 +  +          + V       +  +   D ++       +     + + V 
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297

Query: 542 IFIGHRSMILSLAMSPDGRYMA-------SGDEDGTIMMWDLASGRCVTPLMGHTSC--- 591
              G     L +   P   ++              ++ ++DL +      ++        
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 357

Query: 592 ------VWTLAYSCEG-----SLLASGSADCTVKLWDVTT 620
                 V    Y+  G     S+    +    + + D  T
Sbjct: 358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 397

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 65.3 bits (157), Expect = 4e-12
 Identities = 26/256 (10%), Positives = 60/256 (23%), Gaps = 19/256 (7%)

Query: 348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406
           I   +    A IS DG+ +       + + + D A     A               D   
Sbjct: 28  IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ 87

Query: 407 PNGRKRSYTLY-------------QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN 453
                 + +                         + SP G  +  ++           + 
Sbjct: 88  VYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147

Query: 454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV---DC 510
             ++           +   P G     ++ D  +          +       +       
Sbjct: 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV 207

Query: 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDG 569
                            TV + D  + +              +A++PDG+ +  +     
Sbjct: 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCN 266

Query: 570 TIMMWDLASGRCVTPL 585
           T+ + D A+      +
Sbjct: 267 TVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDLA 577
           YI   S    + + DV+S +         S  +   +SPDG  +  +      + + D A
Sbjct: 5   YI-ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 578 SGRCVTPLMGHTSCVWTLAYSC 599
           +   +  +   +S         
Sbjct: 63  TNNVIATVPAGSSPQGVAVSPD 84

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 50.3 bits (118), Expect = 3e-07
 Identities = 29/270 (10%), Positives = 70/270 (25%), Gaps = 50/270 (18%)

Query: 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGH 462
           +I     K + T+    S P   A  SP G  +  +++    + +  T  N  +      
Sbjct: 16  VIDVTSNKVTATI-PVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG 73

Query: 463 NYPVWD-----------------------------------------VQFNPQGHYFASS 481
           + P                                            +  +P G     +
Sbjct: 74  SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVT 133

Query: 482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541
           ++            + +            +    +   +   + D        +    V 
Sbjct: 134 NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193

Query: 542 IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW---DLASGRCVTPLMGHTSCVWTLAYS 598
             +   +    +A++P+G      + D         D  + +    +         +A +
Sbjct: 194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVT 252

Query: 599 CEGS-LLASGSADCTVKLWDVTTSTKVLKT 627
            +G  +  + S   TV + D  T+  +  T
Sbjct: 253 PDGKKVYVALSFCNTVSVIDTATN-TITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 13/128 (10%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSS 536
           + ++S      +  +   +    +    S+        +   +    +    V + D ++
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLA 596
              +       S           +   +     T+ + D  S       +        LA
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-VKTGKSPLGLA 122

Query: 597 YSCEGSLL 604
            S +G  L
Sbjct: 123 LSPDGKKL 130

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 59.5 bits (144), Expect = 5e-10
 Identities = 30/260 (11%), Positives = 59/260 (22%), Gaps = 54/260 (20%)

Query: 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411
           N         DG+  +   S +     D   +         Q   D           G+ 
Sbjct: 135 NAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM-----DVAWQVIVDGNLDNTDADYTGKY 189

Query: 412 RSYTLYQGHSGPV------------------YSASFSPLGDFILSSSADTTIRLWSTKLN 453
            + T Y                           A+    G+F           +     +
Sbjct: 190 ATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD-SKVPVVDGRGES 248

Query: 454 ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513
                      P          ++ A+     T  + ++D++  L      +   D +  
Sbjct: 249 EFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL--FEDKIELRDTIVA 306

Query: 514 HIN-------------CNYIATGSSDKTVRLWDVSSGEC---------------VRIFIG 545
                            N   T   D  V  W+++                   V+   G
Sbjct: 307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG 366

Query: 546 HRSMILSLAMSPDGRYMASG 565
           H    L+ +   DG+++   
Sbjct: 367 HNHASLTESRDADGKWLVVL 386

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 23/238 (9%), Positives = 57/238 (23%), Gaps = 33/238 (13%)

Query: 409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWST---KLNANLVCYKGHNY 464
           G  + Y     H   +        G ++  +  A+T +        K +           
Sbjct: 59  GGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQA- 117

Query: 465 PVWDVQFNPQGHY---FASSSH-----------DRTARIWSMDRIQP------LRIMAGH 504
            +  ++          F ++                        I         +++   
Sbjct: 118 -IHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD- 175

Query: 505 LSDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562
             ++D         Y  +    S++ V L      +   + + +   I   A    G + 
Sbjct: 176 -GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA--AAVKAGNFK 232

Query: 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620
             GD     ++           +    +             +A+G    TV +  +  
Sbjct: 233 TIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 11/82 (13%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 519 YIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWD 575
           YIA     + + +W+++    + +   +     +  + +SPD RY+      +  ++ + 
Sbjct: 7   YIA-SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 576 LASGRCVTPLMGHTSCVWTLAY 597
           +A           ++   +L +
Sbjct: 66  IAPDDGALTFAAESALPGSLTH 87

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 10/122 (8%), Positives = 38/122 (31%), Gaps = 6/122 (4%)

Query: 478 FASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDV 534
           + +S   +   +W+++    L +         V  +    +  Y+      +  V  + +
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 535 SSGECVRIFIGHRSMILS---LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC 591
           +  +    F    ++  S   ++    G+++  G  +   +            ++     
Sbjct: 67  APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126

Query: 592 VW 593
           + 
Sbjct: 127 LD 128

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 27/282 (9%), Positives = 66/282 (23%), Gaps = 48/282 (17%)

Query: 346 TFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404
             ++    +    +S D   L  G   +  +  + +A     A++   +     +     
Sbjct: 31  QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP-DDGALTFAAESALPGSLTHIS 89

Query: 405 IGPNGRKRSYTLY---------------------QGHSGPVYSASFSPLGDFILSSSADT 443
               G+      Y                            +SA+ SP    +   +   
Sbjct: 90  TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ 149

Query: 444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503
                 T  +   +  +            P+   F  +             +    +   
Sbjct: 150 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209

Query: 504 HLSDVDCVRWHINC-------------------NYIATGSSDKTVRLWDVSSGECVRIFI 544
           H +        +                     +  A   +   + ++ VS    V    
Sbjct: 210 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 269

Query: 545 GHRS---MILSLAMSPDGRYM-ASGDEDGTIMMW--DLASGR 580
           G +          +   G+Y+ A+G +   I ++      G 
Sbjct: 270 GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 311

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 15/167 (8%), Positives = 40/167 (23%), Gaps = 10/167 (5%)

Query: 438 SSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDR 494
           +S     I +W+      L   +       V  +  +P   Y +     +     + +  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 495 IQPLRIMAGHLSDVDCVRW------HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548
                  A   +    +               +  + + +V   +      V   +    
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 128

Query: 549 MILSLAMSPDGRYMASGDEDGTIMM-WDLASGRCVTPLMGHTSCVWT 594
              S  +SPD R +         +  + ++    +            
Sbjct: 129 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE 175

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 12/121 (9%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHI 515
               H      V  N +   F S +     ++++ +   ++ +         +       
Sbjct: 151 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN 210

Query: 516 NCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMM 573
               IA   ++  + ++    G+ +         +    +A+  DG  + +  +D  + +
Sbjct: 211 GEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYI 268

Query: 574 W 574
           +
Sbjct: 269 Y 269

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 18/141 (12%), Positives = 41/141 (29%), Gaps = 12/141 (8%)

Query: 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN 516
           V     + P + +  N      ++    R    + +D+     I  G    +       +
Sbjct: 316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSD 375

Query: 517 CNYIATGSSDKT--------VRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMA---S 564
             Y  +              ++L D +   C+       R    S++ S + +Y     S
Sbjct: 376 YLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435

Query: 565 GDEDGTIMMWDLASGRCVTPL 585
           G       +    + + +  L
Sbjct: 436 GPGLPLYTLHSSVNDKGLRVL 456

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

 Score = 37.5 bits (86), Expect = 0.004
 Identities = 24/241 (9%), Positives = 57/241 (23%), Gaps = 18/241 (7%)

Query: 359 ISQDGSL--VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416
              +      A     SS  V    ++  +A            PR +    N R      
Sbjct: 47  FDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPI-----GGHPRANDADTNTRAIFLLA 101

Query: 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH 476
            +     VY+  F     +    S   T +L     N         N  +  + F+P   
Sbjct: 102 AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE----YQENTGIHGMVFDPTET 157

Query: 477 Y-FASSSHDRTARIWSMDRIQPLRIMAG-HLSDVDCVRWHINCN-----YIATGSSDKTV 529
           Y +++                 + ++      D       +  +       A   +   +
Sbjct: 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217

Query: 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589
             + +     + ++  H   ++   +         G     +     +          + 
Sbjct: 218 CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277

Query: 590 S 590
            
Sbjct: 278 F 278

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 4/144 (2%)

Query: 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC 517
             + +N        +    + +  +        +++   P RI      + D        
Sbjct: 124 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK 183

Query: 518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR---YMASGDEDGTIMMW 574
             +   S+     +            +    +  + +++P+G    Y +S      + + 
Sbjct: 184 FMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLV 243

Query: 575 DLASGRCVTPLMGHTSCVWTLAYS 598
               GR    L      V   A+S
Sbjct: 244 ST-DGRFKARLPATDGQVKFPAWS 266

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	670
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	100.0
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.71
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.49
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.43
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.26
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.13
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.12
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.09
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.07
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.02
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.97
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.93
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.92
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.9
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.85
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.67
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.55
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.44
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.42
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.25
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.92
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.84
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.81
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.77
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.64
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.62
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.49
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.36
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.34
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.68
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.29
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.05
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.94
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.93
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.89
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.57
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.22
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.19
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.18
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.88
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.73
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.64
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.28
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.13
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.59
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.38
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	93.37
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.83
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.83
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.31
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.07
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	88.06
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	87.39
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	85.23

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-44  Score=320.27  Aligned_cols=149  Identities=29%  Similarity=0.559  Sum_probs=144.1

Q ss_pred             chhhcccccccccccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHh
Q 005913           47 DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEM  126 (670)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~  126 (670)
                      +|++++.+.+|+ +++||+.|+++|.+||+||++|||+||+||.+|||||||||||+||++|+.++|++||+||+++|..
T Consensus         1 ~~~~~~~l~~~~-~~~dp~~Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~   79 (149)
T d2nxpa1           1 QPDVSAVLSAYN-QQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQEC   79 (149)
T ss_dssp             CCCHHHHHGGGS-SCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCG
T ss_pred             CccHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhH
Confidence            357888888886 7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEcC
Q 005913          127 MHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSP  196 (670)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~  196 (670)
                      +|+++|++|++|++|+||++|+++++||+|||+|+||++++++|++||+++++.+|++|||+||+|+|++
T Consensus        80 ~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl~~L~~~~~~~il~Ii~~~l~i~v~d  149 (149)
T d2nxpa1          80 YYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFD  149 (149)
T ss_dssp             GGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHHHHHHhCCChHHHHHHHHHceeeeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999964

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-39  Score=338.67  Aligned_cols=285  Identities=20%  Similarity=0.328  Sum_probs=250.7

Q ss_pred             eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ......+|...|+|++|||+|++||+|+ ||.|+|||+.......                       ........+|.+
T Consensus        43 ~~~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~-----------------------~~~~~~~~~h~~   98 (337)
T d1gxra_          43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----------------------PVSQLDCLNRDN   98 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----------------------CSEEEECSCTTS
T ss_pred             eEEEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc-----------------------eeEEeeecCCCC
Confidence            3344558899999999999999999996 8999999987522110                       112334567999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      .|.+++|+|++++|++|+.||+|++||+...  .....+.+|...+.++.|+|++.++++++.|+.+++|++.+++....
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999998754  34566788999999999999999999999999999999999999999


Q ss_pred             ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      ..+|...|.+++|+++++.+++|+.|+.|++||+++++.+..+ .|...|.+++|+|++++|++|+.||.|++||+.++.
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~  257 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccc
Confidence            9999999999999999999999999999999999999988876 478899999999999999999999999999999887


Q ss_pred             eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL  660 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~  660 (670)
                      .. ....|...|++++|+|++++|++|+.||+|++||+.++...               ..+ .+..+|.+++|+|++++
T Consensus       258 ~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~---------------~~~-~~~~~v~~~~~s~d~~~  320 (337)
T d1gxra_         258 KY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI---------------FQS-KESSSVLSCDISVDDKY  320 (337)
T ss_dssp             EE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---------------EEE-ECSSCEEEEEECTTSCE
T ss_pred             cc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE---------------EEc-cCCCCEEEEEEeCCCCE
Confidence            65 45679999999999999999999999999999999886543               122 35678999999999999


Q ss_pred             EEEeeCCCC
Q 005913          661 FAAGALSKT  669 (670)
Q Consensus       661 La~gs~dgs  669 (670)
                      |++|+.||+
T Consensus       321 l~t~s~D~~  329 (337)
T d1gxra_         321 IVTGSGDKK  329 (337)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEeCCCe
Confidence            999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-39  Score=330.73  Aligned_cols=282  Identities=28%  Similarity=0.498  Sum_probs=263.6

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      +++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+                            ......+.+|.+.|
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~----------------------------~~~~~~~~~h~~~V   62 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------GDFERTLKGHTDSV   62 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------CCCCEEECCCSSCE
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEEeCCCCcE
Confidence            46889999999999999999999999999999999875                            23455678899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ++++|+|++.++++++.++++.+|+.........+.+|...+.++.|+|++..+++++.|+.+++||+++++.+..+.+|
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  142 (317)
T d1vyhc1          63 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH  142 (317)
T ss_dssp             EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccC
Confidence            99999999999999999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC--------------------CEEEE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG--------------------RYMAS  564 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g--------------------~~l~s  564 (670)
                      ...+.+++|+|++++|++|+.|+.|++|++.+++....+.+|...+.+++|+|++                    .++++
T Consensus       143 ~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            9999999999999999999999999999999999999999999999999998853                    46899


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCC
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPT  644 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (670)
                      ++.||.|++||+.+++++..+.+|...|.+++|+|++++|++|+.||.|+|||+.++.               .+..+..
T Consensus       223 ~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~  287 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------------CMKTLNA  287 (317)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---------------CCEEEEC
T ss_pred             ccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc---------------EEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999998754               3556778


Q ss_pred             CCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          645 KSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       645 ~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      |..+|++++|+|++.+|++|+.||+
T Consensus       288 h~~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         288 HEHFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             CSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCe
Confidence            8899999999999999999999985

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=100.00  E-value=1e-41  Score=299.14  Aligned_cols=131  Identities=32%  Similarity=0.726  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhhhc
Q 005913           66 RYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLE  145 (670)
Q Consensus        66 ~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (670)
                      +|+++|.+||+||++|||+||+||.+|||||||||||+||++|+.++|++||+||++||+ .|+++|++|++|++|+|++
T Consensus         1 q~e~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~   79 (131)
T d2j4ba1           1 QMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIH   79 (131)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHh
Confidence            489999999999999999999999999999999999999999999999999999999997 5899999999999999999


Q ss_pred             cCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEcCC
Q 005913          146 EMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG  197 (670)
Q Consensus       146 ~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~  197 (670)
                      +|+++++||+|||+|+||++++++|++||+++++++|++|||+|++|+|++|
T Consensus        80 ~n~~~~~~r~nKy~i~ms~~s~~lL~~fL~~~~~~~il~iin~~l~i~v~~g  131 (131)
T d2j4ba1          80 ENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG  131 (131)
T ss_dssp             HCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred             hhHHHHHHhcCceEEEeCHHHHHHHHHHHHhCCchHHHHHHHHheeEeeeCC
Confidence            9999999999999999999999999999999999999999999999999876

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=4.5e-41  Score=295.84  Aligned_cols=131  Identities=34%  Similarity=0.628  Sum_probs=126.9

Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhHHhhhHHHHHHHhcCCChhh
Q 005913           64 PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSH  143 (670)
Q Consensus        64 ~~~~~~~~~~l~~~v~~~ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (670)
                      |+.|+++|.+||+||++|||+||+||.+|||||||||||+||++|+ .+|++||++|+++|+..|+++|++|++|++|+|
T Consensus         1 P~~Ye~~y~~Lr~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~   79 (134)
T d2j49a1           1 PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDH   79 (134)
T ss_dssp             CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHH
T ss_pred             ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence            7899999999999999999999999999999999999999999985 689999999999999999999999999999999


Q ss_pred             hccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCc---chHhHhhcceeEEEEc
Q 005913          144 LEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVS  195 (670)
Q Consensus       144 ~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~  195 (670)
                      +++|+++++||+|||+|+||++|+++|++||++++.   .+|++|||+||+|+|+
T Consensus        80 l~~n~~~~~~r~nKy~I~ms~~s~~lLl~fL~~~~~~g~~~il~ii~~~l~i~vv  134 (134)
T d2j49a1          80 IKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIV  134 (134)
T ss_dssp             HHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC
T ss_pred             HHhhHHHHHHHcCCeEEEEcHHHHHHHHHHHHhcccchHHHHHHHHHHhcceeeC
Confidence            999999999999999999999999999999999865   5899999999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-37  Score=328.44  Aligned_cols=313  Identities=25%  Similarity=0.411  Sum_probs=249.8

Q ss_pred             ceecCCCCCCce---eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCC
Q 005913          331 RVHLSSAALPSV---SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP  407 (670)
Q Consensus       331 ~~~l~~~~~ps~---~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (670)
                      ...+|+...+..   .+...++|.+.|+|++|||||++||+|+ |+.|+||++.+..............          .
T Consensus        39 ~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~----------~  107 (388)
T d1erja_          39 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN----------K  107 (388)
T ss_dssp             CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------
T ss_pred             cEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc----------c
Confidence            445666655543   3344567999999999999999999996 8999999998654332211100000          0


Q ss_pred             CCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcE
Q 005913          408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA  487 (670)
Q Consensus       408 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v  487 (670)
                      ...........+|...|++++|+|++++|++|+.||+|++|+...++.+..+.+|...|.++.|++++..+++++.++.+
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i  187 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV  187 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceee
Confidence            00111223445788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE-------ecCCCCeEEEEEcCCCC
Q 005913          488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGR  560 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~I~~l~~sp~g~  560 (670)
                      ++||..+.........+...+....+.+++++|++|+.||.|++||..++..+..+       .+|.+.|.+++|+|+++
T Consensus       188 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  267 (388)
T d1erja_         188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ  267 (388)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             eeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence            99999998888777766554544444568899999999999999999998877655       36788999999999999


Q ss_pred             EEEEEECCCeEEEEeCCCCe------------eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccc
Q 005913          561 YMASGDEDGTIMMWDLASGR------------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE  628 (670)
Q Consensus       561 ~l~sg~~dg~I~iwDl~~~~------------~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~  628 (670)
                      +|++|+.||.|++||+.++.            .......|...|++++|+|++++|++|+.||+|++||+.++.      
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~------  341 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN------  341 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC------
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc------
Confidence            99999999999999997653            334556788999999999999999999999999999998764      


Q ss_pred             cccCCcccccccccCCCCCCeEEEEE------ecCCcEEEEeeCCCC
Q 005913          629 EKSGTNRLRSLKTLPTKSTPVYSLQF------SRRNLLFAAGALSKT  669 (670)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~V~~l~f------s~~~~~La~gs~dgs  669 (670)
                               .+..+..|..+|.++++      +|++.+||+|+.||+
T Consensus       342 ---------~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~  379 (388)
T d1erja_         342 ---------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  379 (388)
T ss_dssp             ---------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             ---------EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCE
Confidence                     35567788999999874      678999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.9e-38  Score=322.85  Aligned_cols=275  Identities=21%  Similarity=0.324  Sum_probs=235.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      .+...+++++|+|+.||.+. ++.|.+|++..                            ......+.+|.+.|++++|+
T Consensus        17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------------~~~~~~~~~H~~~v~~~~~s   67 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------------LTDTEIYTEHSHQTTVAKTS   67 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------------SSCCEEECCCSSCEEEEEEC
T ss_pred             CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------------CceeEEEcCCCCCEEEEEEe
Confidence            34567889999999999985 66799999875                            23445678999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcee--EEeeCCCccEeEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEecccCC
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMAGHLS  506 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~~~~~~~~~~~~~  506 (670)
                      |+|++|++|+.||+|++||+.+....  ..+.+|..+|.+++|+|++.++++++.  ++.+++|++++++....+.+|..
T Consensus        68 p~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~  147 (311)
T d1nr0a1          68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR  147 (311)
T ss_dssp             TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSS
T ss_pred             CCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999987654  557889999999999999999999986  45699999999999999999999


Q ss_pred             CeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe
Q 005913          507 DVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       507 ~v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~  585 (670)
                      .|.+++|+|++++ |++|+.||.|++||+++++....+.+|..+|++++|+|++++|++++.||.|++||+.++..+..+
T Consensus       148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~  227 (311)
T d1nr0a1         148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF  227 (311)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             ccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccc
Confidence            9999999999985 788999999999999999999999999999999999999999999999999999999998877665


Q ss_pred             e-------CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCC-CeEEEEEecC
Q 005913          586 M-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST-PVYSLQFSRR  657 (670)
Q Consensus       586 ~-------~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~fs~~  657 (670)
                      .       +|.+.|++++|+|++++|++|+.||+|+|||+.++..               +.+++.+.. ....+.+.++
T Consensus       228 ~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~---------------~~~l~~~~~~~~~~~~~~~~  292 (311)
T d1nr0a1         228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV---------------EKTIPVGTRIEDQQLGIIWT  292 (311)
T ss_dssp             BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------EEEEECCSSGGGCEEEEEEC
T ss_pred             cccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE---------------EEEEECCCCccceEEEEEec
Confidence            3       5889999999999999999999999999999987653               223332221 2223344445


Q ss_pred             CcEEEEeeCCCC
Q 005913          658 NLLFAAGALSKT  669 (670)
Q Consensus       658 ~~~La~gs~dgs  669 (670)
                      +..|++|+.||.
T Consensus       293 ~~~l~s~s~dG~  304 (311)
T d1nr0a1         293 KQALVSISANGF  304 (311)
T ss_dssp             SSCEEEEETTCC
T ss_pred             CCEEEEEECCCE
Confidence            567888998885

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-37  Score=325.42  Aligned_cols=292  Identities=18%  Similarity=0.228  Sum_probs=236.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       351 ~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      .++|+|++|||||++||+|+.||.|+||++...                          .......+.+|.++|++++|+
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~--------------------------~~~~~~~l~gH~~~V~~l~fs   60 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------KWVQVHELKEHNGQVTGVDWA   60 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------EEEEEEEEECCSSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCC--------------------------CEEEEEEecCCCCCEEEEEEC
Confidence            367999999999999999999999999997641                          123456788999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCce--eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCcee----EEeccc
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----RIMAGH  504 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~----~~~~~~  504 (670)
                      |++++|++|+.|++|++||+.++..  ...+.+|...|++++|+|++++|++|+.|+++++|+++.....    .....|
T Consensus        61 p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~  140 (371)
T d1k8kc_          61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI  140 (371)
T ss_dssp             TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccc
Confidence            9999999999999999999987654  4456678999999999999999999999999999998765433    334578


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCC------------------cEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG------------------ECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~------------------~~~~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ...|.+++|+|++++|++|+.|++|++||....                  ..+....+|.+.|.+++|+|+|++|++++
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  220 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS  220 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc
Confidence            899999999999999999999999999998643                  35566678999999999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccc------c---------
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK------S---------  631 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~------~---------  631 (670)
                      .||.|++||+.++..+..+..|..+|.+++|+|++.+|++| .|+.+++|..............      .         
T Consensus       221 ~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (371)
T d1k8kc_         221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE  299 (371)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred             cCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCcccccccccccee
Confidence            99999999999999999999999999999999999877765 5787777765543322111000      0         


Q ss_pred             --------C---CcccccccccCCCCCCeEEEEEecCC----cEEEEeeCCCC
Q 005913          632 --------G---TNRLRSLKTLPTKSTPVYSLQFSRRN----LLFAAGALSKT  669 (670)
Q Consensus       632 --------~---~~~~~~~~~~~~~~~~V~~l~fs~~~----~~La~gs~dgs  669 (670)
                              .   ............|.+.|.++++.+.+    ..+++|+.||+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~  352 (371)
T d1k8kc_         300 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG  352 (371)
T ss_dssp             HHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred             eEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCe
Confidence                    0   00001111123478899999998854    46899999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-35  Score=306.10  Aligned_cols=282  Identities=21%  Similarity=0.368  Sum_probs=251.0

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      ..++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+                            ......+.+|.++
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~----------------------------~~~~~~~~~~~~~   99 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT----------------------------TNKVHAIPLRSSW   99 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------TEEEEEEECSCSC
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc----------------------------ceeEEEEeccccc
Confidence            457889999999999999999999999999999999875                            3455667889999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      |.+++|+|++.++++|+.|+.+++|+.....    ....+.+|.......... .+..+..+..|.....|.........
T Consensus       100 v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (340)
T d1tbga_         100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTT  178 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc-cccccccccccccccccccccccccc
Confidence            9999999999999999999999999976543    345566777766655554 45578888899999999998888888


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG  579 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~  579 (670)
                      ....+...+.+..+.+.+.++++|+.|+.|++||+++++++..+.+|.+.|++++|+|++.+|++|+.||.|++||+...
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            88888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEee--CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecC
Q 005913          580 RCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRR  657 (670)
Q Consensus       580 ~~~~~~~--~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~  657 (670)
                      ..+..+.  .|...|.+++|+|++++|++|+.||.|++||+.++.               .+..+..|..+|.+++|+|+
T Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~---------------~~~~~~~H~~~V~~l~~s~d  323 (340)
T d1tbga_         259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---------------RAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC---------------EEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc---------------EEEEEcCCCCCEEEEEEeCC
Confidence            8877654  566789999999999999999999999999998764               35667788999999999999


Q ss_pred             CcEEEEeeCCCC
Q 005913          658 NLLFAAGALSKT  669 (670)
Q Consensus       658 ~~~La~gs~dgs  669 (670)
                      +.+||+|+.||+
T Consensus       324 ~~~l~s~s~Dg~  335 (340)
T d1tbga_         324 GMAVATGSWDSF  335 (340)
T ss_dssp             SSCEEEEETTSC
T ss_pred             CCEEEEEccCCE
Confidence            999999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-36  Score=313.45  Aligned_cols=261  Identities=20%  Similarity=0.258  Sum_probs=226.2

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG  409 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (670)
                      +.+.+|+...+... ..+.+|.+.|+|++|+|+|++||+|+.||.|+||++....                         
T Consensus        38 ~~v~i~~~~~~~~~-~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~-------------------------   91 (311)
T d1nr0a1          38 TSVYTVPVGSLTDT-EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-------------------------   91 (311)
T ss_dssp             TEEEEEETTCSSCC-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-------------------------
T ss_pred             CEEEEEECCCCcee-EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc-------------------------
Confidence            45667765444322 2356888999999999999999999999999999987521                         


Q ss_pred             CccceeeeecCccCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE-EEEEECCCc
Q 005913          410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRT  486 (670)
Q Consensus       410 ~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~  486 (670)
                       ......+.+|.++|.+++|+|++++|++++.  +..+++|++++++....+.+|...|.+++|+|++.+ |++|+.|+.
T Consensus        92 -~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          92 -HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             -CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             -cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             1233457789999999999999999999886  466999999999999999999999999999999885 888999999


Q ss_pred             EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-------cCCCCeEEEEEcCCC
Q 005913          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-------GHRSMILSLAMSPDG  559 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-------~h~~~I~~l~~sp~g  559 (670)
                      |++||+++++....+.+|...|.++.|+|+++++++|+.|+.|++||+.++..+..+.       +|.+.|++++|+|+|
T Consensus       171 i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            9999999999999999999999999999999999999999999999999998887664       578899999999999


Q ss_pred             CEEEEEECCCeEEEEeCCCCeeeEEeeCCCc---ceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          560 RYMASGDEDGTIMMWDLASGRCVTPLMGHTS---CVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       560 ~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~---~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      ++|++|+.||.|+|||+++++++..+..|..   .+.++.|  +++.|++++.||.|++||.+
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            9999999999999999999999999887653   3444555  56679999999999999964

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=307.00  Aligned_cols=261  Identities=20%  Similarity=0.327  Sum_probs=233.1

Q ss_pred             ccceecCCCCCC----ceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccc
Q 005913          329 RNRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI  404 (670)
Q Consensus       329 ~~~~~l~~~~~p----s~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~  404 (670)
                      ...+++|+...+    ........+|.+.|+|++|+||+++|++|+.||.|++||+....                    
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~--------------------  130 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--------------------  130 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc--------------------
Confidence            346888865322    33444556788899999999999999999999999999986411                    


Q ss_pred             cCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC
Q 005913          405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD  484 (670)
Q Consensus       405 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d  484 (670)
                            ......+.+|...|.+++|+|++.++++++.|+.|++|++.+++......+|..+|.+++|++++..+++|+.|
T Consensus       131 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         131 ------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             -------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                  23445677899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       485 g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      +.+++||+++++.+..+. |...|.+++|+|+++++++|+.|+.|++||+++++... ...|...|++++|+|+|++|++
T Consensus       205 ~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccc-ccccccccceEEECCCCCEEEE
Confidence            999999999998887765 78899999999999999999999999999999888764 5679999999999999999999


Q ss_pred             EECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                      |+.||.|++||+.+++.+..+. |.+.|++++|+|++++|++|+.||+|+|||+
T Consensus       283 ~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         283 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999887764 7889999999999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.6e-34  Score=289.29  Aligned_cols=279  Identities=16%  Similarity=0.222  Sum_probs=221.6

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceee-eecCcc
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSG  422 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~  422 (670)
                      ..++.+|.+.|+|++|+||+++||+|+.||.|++||+.+..                            .... ..+|..
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~----------------------------~~~~~~~~h~~   56 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI----------------------------SNRVFPDVHAT   56 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------EEECSSCSCSS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc----------------------------EEEEEcCCCCC
Confidence            34678999999999999999999999999999999987522                            1222 246899


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      .|++++|+|++.+ ++++.|+++++|+......   ......+...+.+++|+|++.++++++ ++.+.+|+...  ...
T Consensus        57 ~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~  132 (299)
T d1nr0a2          57 MITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTE  132 (299)
T ss_dssp             CEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEE
T ss_pred             cEEEEEeecccee-ecccceeeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccc
Confidence            9999999999875 5566799999999865432   222345677899999999998776665 57899998543  222


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS  578 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~  578 (670)
                      ..  ....+.+++|+|+++++++|+.||.|++||+++++... ....|...|++++|+|++.+|++++.||.|++||+.+
T Consensus       133 ~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         133 VP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            22  34568899999999999999999999999998887654 3457889999999999999999999999999999988


Q ss_pred             CeeeE---EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEe
Q 005913          579 GRCVT---PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFS  655 (670)
Q Consensus       579 ~~~~~---~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs  655 (670)
                      +..+.   .+.+|...|++++|+|++.+|++|+.||+|++||+.......            .+.....+...|.++.| 
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~------------~~~~~~~~~~~v~~~~~-  277 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP------------IIIKGAHAMSSVNSVIW-  277 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC------------EEETTSSTTSCEEEEEE-
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcce------------EEEecCCCCCcEEEEEE-
Confidence            76543   456789999999999999999999999999999998764321            11122234456776655 


Q ss_pred             cCCcEEEEeeCCCC
Q 005913          656 RRNLLFAAGALSKT  669 (670)
Q Consensus       656 ~~~~~La~gs~dgs  669 (670)
                      +++.+|++|+.||+
T Consensus       278 ~~~~~l~s~s~D~~  291 (299)
T d1nr0a2         278 LNETTIVSAGQDSN  291 (299)
T ss_dssp             EETTEEEEEETTSC
T ss_pred             CCCCEEEEEeCCCE
Confidence            55678899999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-33  Score=284.95  Aligned_cols=260  Identities=28%  Similarity=0.529  Sum_probs=239.2

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+..... +..++..|.+.|++++|+|++.++++++.++.+.+|+...                          
T Consensus        38 Dg~i~iWd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   90 (317)
T d1vyhc1          38 DATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--------------------------   90 (317)
T ss_dssp             SSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred             CCeEEEEECCCCC-EEEEEeCCCCcEEEEeeecccccccccccccccccccccc--------------------------
Confidence            3578888764433 3456778899999999999999999999999999999764                          


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                        ......+.+|...+.++.|+|+++.+++++.|+.+++||+.++..+..+.+|...+.+++|+|++.+|++++.|+.|+
T Consensus        91 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          91 --FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             --SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             --cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence              223445667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCC--------------------CEEEEEEcCCcEEEEECCCCcEEEEEecCCC
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINC--------------------NYIATGSSDKTVRLWDVSSGECVRIFIGHRS  548 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~--------------------~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~  548 (670)
                      +|++.+++....+.+|...+.+++|+|++                    .++++|+.|+.|++||+++++++..+.+|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            99999999999999999999999998754                    4689999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      .|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.8e-33  Score=292.78  Aligned_cols=245  Identities=27%  Similarity=0.550  Sum_probs=213.1

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      ...+...|+|++|+|++++|++|+.||.|++|+...                            ........+|...|.+
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~----------------------------~~~~~~~~~h~~~v~~  168 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN----------------------------RKIVMILQGHEQDIYS  168 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------TEEEEEECCCSSCEEE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccc----------------------------cccccccccccccccc
Confidence            345677799999999999999999999999999864                            2355667789999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-----
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-----  501 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~-----  501 (670)
                      ++|++++..+++|+.++.|++||..+.........+...+....+.+++.+|++|+.||.|++|+..++.....+     
T Consensus       169 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~  248 (388)
T d1erja_         169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE  248 (388)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred             cccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc
Confidence            999999999999999999999999988888777766665554444558999999999999999999988776654     


Q ss_pred             --cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCc------------EEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          502 --AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE------------CVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       502 --~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~------------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                        .+|...|.+++|+|++++|++|+.||.|++||++++.            +......|...|.+++|+|+|++|++|+.
T Consensus       249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence              3688899999999999999999999999999997653            34456678899999999999999999999


Q ss_pred             CCeEEEEeCCCCeeeEEeeCCCcceEEEEE------cCCCCEEEEEECCCcEEEEeCC
Q 005913          568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAY------SCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~------s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      ||.|++||+.+++++..+.+|.+.|+++++      +|++++|+||+.||+|+||+++
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999999999999999999975      5789999999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-33  Score=294.48  Aligned_cols=233  Identities=21%  Similarity=0.278  Sum_probs=203.4

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP  497 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~  497 (670)
                      +..+|+|++|+|++++||+|+.||.|+|||+.+++  .+..+++|..+|.+++|+|++.+|++|+.|++|++||++++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34789999999999999999999999999998765  5677889999999999999999999999999999999987654


Q ss_pred             --eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          498 --LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       498 --~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~----~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                        ...+.+|...|.+++|+|++++|++|+.|++|++|++.....    ......|...|.+++|+|+|++|++|+.||.|
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence              444567889999999999999999999999999999876543    23345688899999999999999999999999


Q ss_pred             EEEeCCCC------------------eeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCC
Q 005913          572 MMWDLASG------------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGT  633 (670)
Q Consensus       572 ~iwDl~~~------------------~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~  633 (670)
                      ++||....                  ..+....+|.+.|.+++|+|+|++|++++.||+|++||+..+.           
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-----------  234 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-----------  234 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-----------
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc-----------
Confidence            99998542                  3455667899999999999999999999999999999987653           


Q ss_pred             cccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          634 NRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       634 ~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                          .+..+..+..+|.+++|+|+|.+|++|..+
T Consensus       235 ----~~~~~~~~~~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         235 ----AVATLASETLPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             ----EEEEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred             ----ceeeeecccccceeeeecCCCCEEEEEcCC
Confidence                345666788899999999999999987654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-32  Score=282.16  Aligned_cols=275  Identities=22%  Similarity=0.427  Sum_probs=214.7

Q ss_pred             EEEeecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          344 FYTFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       344 ~~t~~~~~~~V-~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ..++.+|.+.| +|++|  ++++||+|+.||.|+|||+.+                            .+....+.+|.+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~----------------------------~~~~~~l~~H~~   54 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------KKFLLQLSGHDG   54 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT----------------------------TEEEEEEECCSS
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEECCCC
Confidence            45788898875 67666  578999999999999999875                            345677889999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC--CccEeEEEEecCCCEEEEEECCCcEEEEEC--------
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFASSSHDRTARIWSM--------  492 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~--------  492 (670)
                      +|++++|+|+ .+|++|+.||+|++|++...........+  ...+....+++++.++++++.|+.|++||+        
T Consensus        55 ~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~  133 (355)
T d1nexb2          55 GVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD  133 (355)
T ss_dssp             CEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------
T ss_pred             CEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc
Confidence            9999999985 58999999999999999877665444332  222334445555556666666666666654        


Q ss_pred             -------------------------------------------------------CCCceeEEecccCCCeeEEEEcCCC
Q 005913          493 -------------------------------------------------------DRIQPLRIMAGHLSDVDCVRWHINC  517 (670)
Q Consensus       493 -------------------------------------------------------~~~~~~~~~~~~~~~v~~v~~~p~~  517 (670)
                                                                             .+++.+....++...+.++.|+|++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T d1nexb2         134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  213 (355)
T ss_dssp             -----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             ccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc
Confidence                                                                   3444444555677788899999999


Q ss_pred             CEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEE-E
Q 005913          518 NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL-A  596 (670)
Q Consensus       518 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl-~  596 (670)
                      +++++++.|+.|++||++++..+..+.+|...|.+++++  +++|++|+.||.|++||+.++...  +..|...+.++ .
T Consensus       214 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~  289 (355)
T d1nexb2         214 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITT  289 (355)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCE
T ss_pred             eeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEE
Confidence            999999999999999999999999999999999999997  469999999999999999987654  34455555555 4


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          597 YSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       597 ~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      +++++.+|++|+ ||+|+|||+.+++.+              -..+..|..+|.+++|+|+ .++++|+.||+
T Consensus       290 ~~~~~~~l~~g~-d~~i~vwd~~tg~~~--------------~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~  346 (355)
T d1nexb2         290 FYVSDNILVSGS-ENQFNIYNLRSGKLV--------------HANILKDADQIWSVNFKGK-TLVAAVEKDGQ  346 (355)
T ss_dssp             EEECSSEEEEEE-TTEEEEEETTTCCBC--------------CSCTTTTCSEEEEEEEETT-EEEEEEESSSC
T ss_pred             EcCCCCEEEEEe-CCEEEEEECCCCCEE--------------EEEecCCCCCEEEEEEcCC-eEEEEEECCCc
Confidence            567777776664 899999999887532              1234567889999999997 47888898985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-31  Score=275.98  Aligned_cols=278  Identities=25%  Similarity=0.492  Sum_probs=222.4

Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCE
Q 005913          345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV  424 (670)
Q Consensus       345 ~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  424 (670)
                      .++.+|.+.|.+ +++++|++||+|+.||+|+|||+.+                            .+....+.+|.+.|
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~----------------------------~~~~~~~~~h~~~V   60 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT----------------------------GKCLRTLVGHTGGV   60 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT----------------------------CCEEEECCCCSSCE
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEEeCCCCCE
Confidence            357789988865 3666799999999999999999875                            23556788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEe-------------------------------------
Q 005913          425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-------------------------------------  467 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-------------------------------------  467 (670)
                      ++++|+|  ++|++|+.|+++++|+............+...+.                                     
T Consensus        61 ~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  138 (342)
T d2ovrb2          61 WSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA  138 (342)
T ss_dssp             EEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred             EEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccc
Confidence            9999996  4999999999999999876544333222221111                                     


Q ss_pred             -EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecC
Q 005913          468 -DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH  546 (670)
Q Consensus       468 -~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h  546 (670)
                       ...+.+....+++++.|+.+++||......+..+.+|...+.++.  +++.++++|+.||.|++||++.++++..+.+|
T Consensus       139 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~  216 (342)
T d2ovrb2         139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  216 (342)
T ss_dssp             CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEeccc
Confidence             123344566788899999999999999888888988877666655  57889999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeC---CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       547 ~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~---h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      ...+.++++++  ++|++|+.||.|++||+...+....+..   |...+.++.++  ++++++|+.||+|+|||+.+++.
T Consensus       217 ~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         217 QSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             CSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             ccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCE
Confidence            99999888764  6999999999999999999888777764   45667766665  56999999999999999998765


Q ss_pred             ccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          624 VLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .....          ......+..+|++++|+|++.+||+|+.||+
T Consensus       293 i~~~~----------~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         293 IRNLV----------TLESGGSGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             EEEEE----------ECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             EEEEe----------cccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence            32221          1112346678999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-32  Score=280.99  Aligned_cols=278  Identities=19%  Similarity=0.235  Sum_probs=220.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecC-ccCEEEEEE
Q 005913          352 NGLNCASISQDGSLVAGGFSDSS-LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASF  429 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~-I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~  429 (670)
                      +.+++++|+|+++.||+++.++. |+.|+...                          ........+.+| ...|++++|
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~--------------------------~~~~~~~~~~gh~~~~v~~v~f   71 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGD--------------------------SKVPPVVQFTGHGSSVVTTVKF   71 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSC--------------------------CSSCSEEEECTTTTSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCC--------------------------CCccceEEEeCCCCCCEEEEEE
Confidence            35789999999999999865543 45555332                          112344556677 468999999


Q ss_pred             cC--CCCEEEEEeCCCeEEEEeCCCCcee--------EEeeCCCccEeEEEEecCCCEEEEEEC--CCcEEEEECCCCce
Q 005913          430 SP--LGDFILSSSADTTIRLWSTKLNANL--------VCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQP  497 (670)
Q Consensus       430 sp--~~~~L~s~s~Dg~I~lwd~~~~~~~--------~~~~~h~~~V~~l~~sp~g~~l~s~s~--dg~v~lwd~~~~~~  497 (670)
                      +|  ++.+|++|+.||+|+|||+..+...        ..+..|..+|.+++|++++.++++++.  ++.+++|+.++++.
T Consensus        72 sP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~  151 (325)
T d1pgua1          72 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS  151 (325)
T ss_dssp             CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred             eeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc
Confidence            98  5679999999999999998754432        235678899999999999999988764  67899999999999


Q ss_pred             eEEecccCCCeeEEEEcCCCCE-EEEEEcCCcEEEEECCCCcEEEEEe---cCCCCeEEEEEcCC-CCEEEEEECCCeEE
Q 005913          498 LRIMAGHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVRIFI---GHRSMILSLAMSPD-GRYMASGDEDGTIM  572 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~---~h~~~I~~l~~sp~-g~~l~sg~~dg~I~  572 (670)
                      +..+.+|...|.+++|+|++.+ +++++.|+.|++||..+++....+.   .|...|++++|+|+ +.+|++|+.||.|+
T Consensus       152 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~  231 (325)
T d1pgua1         152 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  231 (325)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccccee
Confidence            9999999999999999999875 6789999999999999887766654   46678999999996 68999999999999


Q ss_pred             EEeCCCCeeeEEeeCCCcceEEEEEc---CCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913          573 MWDLASGRCVTPLMGHTSCVWTLAYS---CEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV  649 (670)
Q Consensus       573 iwDl~~~~~~~~~~~h~~~V~sl~~s---~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  649 (670)
                      +||+++++.+..+.+|..++.++.|+   |+|++|++++.|++|+|||+.+++.....             ....+...+
T Consensus       232 iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~-------------~~~~~~~~~  298 (325)
T d1pgua1         232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW-------------TLDKQQLGN  298 (325)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE-------------ECCTTCGGG
T ss_pred             eeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE-------------EecCCcccC
Confidence            99999999999999988877666665   68999999999999999999886542111             122222233


Q ss_pred             E--EEEEecCCcEEEEeeCCCC
Q 005913          650 Y--SLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       650 ~--~l~fs~~~~~La~gs~dgs  669 (670)
                      .  ++.+.+++ +|++|+.||+
T Consensus       299 ~~~~~~~~~~~-~l~s~s~dg~  319 (325)
T d1pgua1         299 QQVGVVATGNG-RIISLSLDGT  319 (325)
T ss_dssp             CEEEEEEEETT-EEEEEETTSC
T ss_pred             eEEEEEECCCC-EEEEEECCCE
Confidence            3  44455544 6788998885

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-31  Score=276.98  Aligned_cols=257  Identities=15%  Similarity=0.169  Sum_probs=210.2

Q ss_pred             eeEEEeecCC-CCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee
Q 005913          342 VSFYTFINTH-NGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ  418 (670)
Q Consensus       342 ~~~~t~~~~~-~~V~~l~fs~--d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (670)
                      .....+.+|+ ..|+|++|+|  ++.+||+|+.||+|+||++.........                    .......+.
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~--------------------~~~~~~~~~  112 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV--------------------EVNVKSEFQ  112 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE--------------------EEEEEEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee--------------------ecccccccc
Confidence            3344566765 5699999998  6789999999999999998642211110                    011223456


Q ss_pred             cCccCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCE-EEEEECCCcEEEEECCCC
Q 005913          419 GHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRI  495 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~-l~s~s~dg~v~lwd~~~~  495 (670)
                      .|.++|.+++|++++.+|++++.  ++.+++|+..+++.+..+.+|...|.+++|+|++.+ +++++.|+.+++||....
T Consensus       113 ~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  192 (325)
T d1pgua1         113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF  192 (325)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred             cccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccc
Confidence            79999999999999999887764  678999999999999999999999999999998765 678999999999999887


Q ss_pred             ceeEEec---ccCCCeeEEEEcCC-CCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEc---CCCCEEEEEECC
Q 005913          496 QPLRIMA---GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS---PDGRYMASGDED  568 (670)
Q Consensus       496 ~~~~~~~---~~~~~v~~v~~~p~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s---p~g~~l~sg~~d  568 (670)
                      +....+.   .|...|.+++|+|+ +.+|++|+.||.|++||+++++.+..+.+|..++.++.|+   |+|++|++++.|
T Consensus       193 ~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D  272 (325)
T d1pgua1         193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD  272 (325)
T ss_dssp             EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT
T ss_pred             ccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCC
Confidence            7665543   56778999999996 6899999999999999999999999999998887766666   789999999999


Q ss_pred             CeEEEEeCCCCeeeEEeeCCCcc--eEEEEEcCC-CCEEEEEECCCcEEEEeC
Q 005913          569 GTIMMWDLASGRCVTPLMGHTSC--VWTLAYSCE-GSLLASGSADCTVKLWDV  618 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h~~~--V~sl~~s~~-g~~l~sgs~Dg~I~iwd~  618 (670)
                      |.|+|||+.+++++..+..|...  +..+++.+. +.+|++|+.||+|+|||+
T Consensus       273 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         273 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            99999999999999888766543  334444332 347899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-30  Score=268.63  Aligned_cols=263  Identities=24%  Similarity=0.372  Sum_probs=232.3

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+.... ....++..|...|++++|+|+++++++|+.|+.|++|+......                       
T Consensus        76 Dg~v~iWd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------------  131 (340)
T d1tbga_          76 DGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------------------  131 (340)
T ss_dssp             TTEEEEEETTTT-EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS-----------------------
T ss_pred             CCceeeeecccc-eeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccc-----------------------
Confidence            357889976544 34556778889999999999999999999999999999764211                       


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR  488 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~  488 (670)
                       .......+.+|........+.. +..+..+..|.....|.............+...+....+.+.+.++++|+.|+.|+
T Consensus       132 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  209 (340)
T d1tbga_         132 -NVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             -CCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             -ccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEE
Confidence             1234455677887777666654 56778888899999999998888888888899999999999999999999999999


Q ss_pred             EEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEE
Q 005913          489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      +||+++++++..+.+|...|.+++|+|++++|++|+.||.|++||++....+..+.  .+...|.+++|+|+|++|++|+
T Consensus       210 i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
T d1tbga_         210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE
Confidence            99999999999999999999999999999999999999999999999998877664  4566799999999999999999


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      .||.|++||+.+++++..+.+|.++|++++|+|++.+|++|+.||+|+|||
T Consensus       290 ~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999999999999999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-29  Score=252.02  Aligned_cols=275  Identities=27%  Similarity=0.527  Sum_probs=226.1

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      +..+..+|+|++|  |+++||+|+.||+|+|||+.+                            ......+.+|.++|++
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~----------------------------~~~~~~l~~H~~~V~~   60 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT----------------------------LECKRILTGHTGSVLC   60 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS----------------------------CCEEEEECCCSSCEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEecCCCCEee
Confidence            4567788999765  799999999999999999875                            3456678899999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecc
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAG  503 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~---~~~~~~  503 (670)
                      ++|  ++++|++|+.||+|++|++..+........+....  ..+.+....+++++.++.+.+|+......   ...+..
T Consensus        61 v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (293)
T d1p22a2          61 LQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG  136 (293)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             eec--ccceeeccccccccccccccccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccc
Confidence            987  57899999999999999999888777766554433  44556677899999999999999986553   345567


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeE
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT  583 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~  583 (670)
                      |...+.++.+.  ...+++++.|+.|++||+++++.+..+.++...+..+.++  +.++++++.||.|++||+++...+.
T Consensus       137 ~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~  212 (293)
T d1p22a2         137 HRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR  212 (293)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeee
Confidence            88888887775  4578899999999999999999999999999999888776  5689999999999999999999999


Q ss_pred             EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913          584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       584 ~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~  663 (670)
                      .+.+|...|..  +++++.+|++|+.||.|++||+........      ......+..+..|..+|++++|+  +.+|++
T Consensus       213 ~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s  282 (293)
T d1p22a2         213 VLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRA------PAGTLCLRTLVEHSGRVFRLQFD--EFQIVS  282 (293)
T ss_dssp             EECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTS------CTTTTEEEEECCCSSCCCCEEEC--SSCEEE
T ss_pred             eecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccc------cCCceeeEEecCCCCCEEEEEEc--CCEEEE
Confidence            99999888865  456788999999999999999865432211      11123456778899999999995  567999


Q ss_pred             eeCCCC
Q 005913          664 GALSKT  669 (670)
Q Consensus       664 gs~dgs  669 (670)
                      |+.||+
T Consensus       283 ~s~Dg~  288 (293)
T d1p22a2         283 SSHDDT  288 (293)
T ss_dssp             CCSSSE
T ss_pred             EecCCE
Confidence            999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-30  Score=276.06  Aligned_cols=298  Identities=17%  Similarity=0.265  Sum_probs=211.1

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      ..+|.+.|.++++++  +++++|+.|++|+||+........                      ..........|...+..
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~----------------------~~~~~~~~~~~~~~~~~   65 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------------------PKDKSYSHFVHKSGLHH   65 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------------------GGGGEEEEECCTTCEEE
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc----------------------ccceeEeeeeccCCceE
Confidence            457889999999875  699999999999999976422110                      01112222334443332


Q ss_pred             EEE------cC-CCCEEEEEeCCCeEEEEeCCCCceeEEe----------eCCCccEeEEEEecC-----CCEEEEEECC
Q 005913          427 ASF------SP-LGDFILSSSADTTIRLWSTKLNANLVCY----------KGHNYPVWDVQFNPQ-----GHYFASSSHD  484 (670)
Q Consensus       427 l~~------sp-~~~~L~s~s~Dg~I~lwd~~~~~~~~~~----------~~h~~~V~~l~~sp~-----g~~l~s~s~d  484 (670)
                      +..      +. ++.++++++.||.|++|++.........          ..+...++.++|.++     +.++++++.|
T Consensus        66 ~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  145 (393)
T d1sq9a_          66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK  145 (393)
T ss_dssp             EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred             eeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCC
Confidence            222      21 2346789999999999997644322111          124556888888875     4689999999


Q ss_pred             CcEEEEECCCCc-----------e-------eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE---
Q 005913          485 RTARIWSMDRIQ-----------P-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---  543 (670)
Q Consensus       485 g~v~lwd~~~~~-----------~-------~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~---  543 (670)
                      |++++|++....           .       ......+...+.+++|+|++ +|++|+.||+|++||+.+++++..+   
T Consensus       146 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~  224 (393)
T d1sq9a_         146 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ  224 (393)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             CcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc
Confidence            999999974221           0       11112345568999999997 8999999999999999999887654   


Q ss_pred             ---ecCCCCeEEEEEcCCCCEEEEEECCC---eEEEEeCCCCeeeEEee-------------CCCcceEEEEEcCCCCEE
Q 005913          544 ---IGHRSMILSLAMSPDGRYMASGDEDG---TIMMWDLASGRCVTPLM-------------GHTSCVWTLAYSCEGSLL  604 (670)
Q Consensus       544 ---~~h~~~I~~l~~sp~g~~l~sg~~dg---~I~iwDl~~~~~~~~~~-------------~h~~~V~sl~~s~~g~~l  604 (670)
                         .+|..+|.+++|+|+|++|++|+.|+   .|++||+.+++++..+.             +|.+.|++++|+|++++|
T Consensus       225 ~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l  304 (393)
T d1sq9a_         225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  304 (393)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence               46889999999999999999999887   49999999998877663             799999999999999999


Q ss_pred             EEEECCCcEEEEeCCCCccccccccccCCccc-ccccccC-----CCCCCeEEEEEecCC----------cEEEEeeCCC
Q 005913          605 ASGSADCTVKLWDVTTSTKVLKTEEKSGTNRL-RSLKTLP-----TKSTPVYSLQFSRRN----------LLFAAGALSK  668 (670)
Q Consensus       605 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~V~~l~fs~~~----------~~La~gs~dg  668 (670)
                      +||+.||+|+|||+.+++.......+...... .....+.     .....+.++.|.+++          ..+++++.|+
T Consensus       305 ~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  384 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  384 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             EEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCC
Confidence            99999999999999998766554322111100 0000111     113457888887653          3467777665


Q ss_pred             C
Q 005913          669 T  669 (670)
Q Consensus       669 s  669 (670)
                      +
T Consensus       385 ~  385 (393)
T d1sq9a_         385 S  385 (393)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.7e-29  Score=257.11  Aligned_cols=240  Identities=15%  Similarity=0.209  Sum_probs=200.4

Q ss_pred             cceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCcEEEE
Q 005913          412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIW  490 (670)
Q Consensus       412 ~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~v~lw  490 (670)
                      ...+.+.||.++|++++|+|++++|++|+.||+|++||+.+++....+. +|...|++++|+|+|. +++++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEe
Confidence            4567889999999999999999999999999999999999998888774 6899999999999987 5667789999999


Q ss_pred             ECCCCce---eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 005913          491 SMDRIQP---LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE  567 (670)
Q Consensus       491 d~~~~~~---~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~  567 (670)
                      +......   ......+...+.+++|+|++.++++++ ++.+++|+..  +.....  ....+.+++|+|++++|++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEET
T ss_pred             ccCCccccccccccccccccccccccccccccccccc-cccccccccc--cccccc--cccccccccccccccccccccc
Confidence            9865321   222345677899999999999777664 6789999853  333332  3456889999999999999999


Q ss_pred             CCeEEEEeCCCCeeeE-EeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCC
Q 005913          568 DGTIMMWDLASGRCVT-PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS  646 (670)
Q Consensus       568 dg~I~iwDl~~~~~~~-~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (670)
                      ||.|++||+.++.... ....|...|++++|+|++.+|++++.||.|++||+.++...            .....+..|.
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------------~~~~~~~~h~  224 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL------------AHTNSWTFHT  224 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE------------SCCCCCCCCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------cccccccccc
Confidence            9999999998887553 34578999999999999999999999999999999775432            2234566788


Q ss_pred             CCeEEEEEecCCcEEEEeeCCCC
Q 005913          647 TPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       647 ~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .+|.+++|+|++.+|++|+.||+
T Consensus       225 ~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         225 AKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccceEEEcCCCE
Confidence            89999999999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-29  Score=258.09  Aligned_cols=281  Identities=12%  Similarity=0.045  Sum_probs=213.8

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      ..+|.+.|++++|||++++||+|+.||+|+|||+.....                         ........+|.++|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-------------------------~~~~~~~~~h~~~V~~   61 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------NVDLLQSLRYKHPLLC   61 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------EEEEEEEEECSSCEEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-------------------------ceEEEEecCCCCCEEE
Confidence            356778899999999999999999999999999864211                         1233444579999999


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeeCCCcc-EeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe---
Q 005913          427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM---  501 (670)
Q Consensus       427 l~~sp~~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~---  501 (670)
                      ++|+|++ .+|++|+.||+|++|++...........+... .....+.+++..+++++.++++++||++........   
T Consensus        62 v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~  141 (342)
T d1yfqa_          62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             EEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred             EEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecc
Confidence            9999875 57899999999999999988777766655443 345566778899999999999999998654333222   


Q ss_pred             -ccc--CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE---EEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 005913          502 -AGH--LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV---RIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMW  574 (670)
Q Consensus       502 -~~~--~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~I~~l~~sp-~g~~l~sg~~dg~I~iw  574 (670)
                       ..+  .....++.+.+.++.+++++.|+.|++||++.+...   .....+...+.+..+.+ ++..+++++.||.+.+|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             cccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence             222  233456777889999999999999999999876543   22334445566666655 67899999999999999


Q ss_pred             eCCCCeee---------------EEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccc
Q 005913          575 DLASGRCV---------------TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSL  639 (670)
Q Consensus       575 Dl~~~~~~---------------~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  639 (670)
                      ++......               ....+|...|++++|+|++++|++|+.||+|+|||+.+...               +
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~---------------l  286 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK---------------I  286 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE---------------E
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcE---------------E
Confidence            98643211               11135667899999999999999999999999999988653               3


Q ss_pred             cccCCCCCCeEEEEEecCCcEEEEeeCCC
Q 005913          640 KTLPTKSTPVYSLQFSRRNLLFAAGALSK  668 (670)
Q Consensus       640 ~~~~~~~~~V~~l~fs~~~~~La~gs~dg  668 (670)
                      ..+.. ..++..++|+|++.+||+|+.|+
T Consensus       287 ~~~~~-~~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         287 KNFAK-FNEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             EECCC-CSSSEEEEEEECSSEEEEEEECT
T ss_pred             EEecC-CCCCEEEEEEeCCCEEEEEEcCC
Confidence            33332 23566788899999999988775

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.4e-29  Score=251.43  Aligned_cols=263  Identities=20%  Similarity=0.235  Sum_probs=214.3

Q ss_pred             eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       343 ~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ...++.+|.++|+|++|+|    |++|+.||+|++|++.+                                 ...+|..
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~---------------------------------~~~~h~~   47 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS---------------------------------MHQDHSN   47 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE---------------------------------EECCCCS
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC---------------------------------CCCCCCC
Confidence            4568899999999999998    99999999999999753                                 1247999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA  502 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~  502 (670)
                      .|.+++|+++ ..+++++.|++|++|++....       ....+.++.+++++..+++ +.++.+.+|+..+++.+..+.
T Consensus        48 ~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  118 (287)
T d1pgua2          48 LIVSLDNSKA-QEYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVR  118 (287)
T ss_dssp             CEEEEECCST-TCCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEecCC-CeEEEEeeccccccccccccc-------cccceeeeeeccCCceEEE-eecccceeeeccceeeeeecc
Confidence            9999999975 467899999999999975321       3345778888888866665 466789999999988888776


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEEcCC-cEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          503 GHLSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       503 ~~~~~v~~v~~~p~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      .+ ..  +.+++++++.+++++.++ .|++|++...+....+. .|.+.+++++|+|+|.+|++|+.||.|++||+.++.
T Consensus       119 ~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  195 (287)
T d1pgua2         119 LN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE  195 (287)
T ss_dssp             CS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cc-ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc
Confidence            43 33  456678888998888775 79999998766555443 477889999999999999999999999999999988


Q ss_pred             eeE-EeeCCCcceEEEEEcCC----------CCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCe
Q 005913          581 CVT-PLMGHTSCVWTLAYSCE----------GSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPV  649 (670)
Q Consensus       581 ~~~-~~~~h~~~V~sl~~s~~----------g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  649 (670)
                      .+. .+.+|...|.+++|+|.          +.+|++|+.|++|+|||+..+..              .+..+..|...|
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--------------~~~~~~~h~~~V  261 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--------------IIKALNAHKDGV  261 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--------------CEEETTSSTTCE
T ss_pred             cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--------------EEEEeCCCCCCe
Confidence            765 46789999999999874          46899999999999999876432              345666889999


Q ss_pred             EEEEEecCCcEEEEeeCCCC
Q 005913          650 YSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       650 ~~l~fs~~~~~La~gs~dgs  669 (670)
                      .+++|+|++. |++++.||+
T Consensus       262 ~~v~~~~~~~-l~s~g~D~~  280 (287)
T d1pgua2         262 NNLLWETPST-LVSSGADAC  280 (287)
T ss_dssp             EEEEEEETTE-EEEEETTSC
T ss_pred             EEEEECCCCE-EEEEECCCe
Confidence            9999999985 677888875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.3e-27  Score=239.91  Aligned_cols=280  Identities=19%  Similarity=0.343  Sum_probs=213.1

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCC-------------
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGE-------------  395 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~-------------  395 (670)
                      ...+++|+.... .+..++.+|.+.|++++|+|+ .+|++|+.||.|++|++...............             
T Consensus        32 Dg~i~vWd~~~~-~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (355)
T d1nexb2          32 DKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK  109 (355)
T ss_dssp             TTEEEEEETTTT-EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEE
T ss_pred             CCeEEEEECCCC-cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccc
Confidence            356889976543 456678889999999999986 58999999999999998764322111100000             


Q ss_pred             ------CCC-------CCC-------------ccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 005913          396 ------NDT-------TPR-------------EDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWS  449 (670)
Q Consensus       396 ------~~~-------~~~-------------~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd  449 (670)
                            .+.       ...             ..................|...|.+  +.++++++++++.|+.|++||
T Consensus       110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d  187 (355)
T d1nexb2         110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWD  187 (355)
T ss_dssp             EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccceeeeee
Confidence                  000       000             0000001111222334455556654  445689999999999999999


Q ss_pred             CCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcE
Q 005913          450 TKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV  529 (670)
Q Consensus       450 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I  529 (670)
                      +.+++.+....++...+.++.|+|++.++++++.|++|++||+.++..+..+.+|...|.+++|+  +++|++|+.||.|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i  265 (355)
T d1nexb2         188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSI  265 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEE
T ss_pred             cccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999986  4799999999999


Q ss_pred             EEEECCCCcEEEEEecCCCCeEEE-EEcCCCCEEEEEECCCeEEEEeCCCCeeeE-EeeCCCcceEEEEEcCCCCEEEEE
Q 005913          530 RLWDVSSGECVRIFIGHRSMILSL-AMSPDGRYMASGDEDGTIMMWDLASGRCVT-PLMGHTSCVWTLAYSCEGSLLASG  607 (670)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~I~~l-~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~-~~~~h~~~V~sl~~s~~g~~l~sg  607 (670)
                      ++||++++...  +..|...+.++ .+++++.++++| .||.|++||+++++++. .+.+|.+.|++++|+|+ .+++++
T Consensus       266 ~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~  341 (355)
T d1nexb2         266 RGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAV  341 (355)
T ss_dssp             EEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEE
T ss_pred             cccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEE
Confidence            99999988755  44556666655 456777777666 48999999999999885 46789999999999986 578889


Q ss_pred             ECCCcEEEEeC
Q 005913          608 SADCTVKLWDV  618 (670)
Q Consensus       608 s~Dg~I~iwd~  618 (670)
                      +.||+++||.+
T Consensus       342 s~dg~~~l~~~  352 (355)
T d1nexb2         342 EKDGQSFLEIL  352 (355)
T ss_dssp             ESSSCEEEEEE
T ss_pred             ECCCcEEEEEE
Confidence            99999776643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-26  Score=233.40  Aligned_cols=281  Identities=22%  Similarity=0.437  Sum_probs=211.6

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCC---CCC----
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT---TPR----  401 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~---~~~----  401 (670)
                      ...+++|+.... .+..++.+|.+.|.+++|+|+  +|++|+.|+.+++|+...................   ...    
T Consensus        36 Dg~i~vWd~~~~-~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (342)
T d2ovrb2          36 DNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS  112 (342)
T ss_dssp             TSCEEEEETTTC-CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCC-CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccc
Confidence            356889976543 356678889999999999975  9999999999999998753322111100000000   000    


Q ss_pred             ----ccc-cCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCC
Q 005913          402 ----EDI-IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH  476 (670)
Q Consensus       402 ----~~~-~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~  476 (670)
                          ..+ ............+..+....  ..+.+....+++++.|+.|++||......+..+.+|...+..  +++++.
T Consensus       113 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~  188 (342)
T d2ovrb2         113 GSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGI  188 (342)
T ss_dssp             EETTSEEEEEESSSCCEEEEEECCSSCE--EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSS
T ss_pred             cccceeEEEeecccccceeeeecccccc--eeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCC
Confidence                000 00000111122222222222  234445678899999999999999999999999998876655  455788


Q ss_pred             EEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec---CCCCeEEE
Q 005913          477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSL  553 (670)
Q Consensus       477 ~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l  553 (670)
                      ++++|+.||+|++||++.++++..+.+|...+.++++++  ++|++|+.||.|++||+...+....+..   |...+.++
T Consensus       189 ~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  266 (342)
T d2ovrb2         189 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL  266 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred             EEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeec
Confidence            999999999999999999999999999999999888764  6999999999999999999988887765   44566666


Q ss_pred             EEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee-----CCCcceEEEEEcCCCCEEEEEECCCc----EEEEeCCC
Q 005913          554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYSCEGSLLASGSADCT----VKLWDVTT  620 (670)
Q Consensus       554 ~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~-----~h~~~V~sl~~s~~g~~l~sgs~Dg~----I~iwd~~~  620 (670)
                      .++  +.++++|+.||.|++||+++++.+..+.     +|.+.|++++|+|++.+|++|+.||+    |++||++.
T Consensus       267 ~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         267 QFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            665  5699999999999999999999988774     57788999999999999999999996    99999865

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.3e-26  Score=241.62  Aligned_cols=227  Identities=17%  Similarity=0.235  Sum_probs=176.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC-----CEEE
Q 005913          363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG-----DFIL  437 (670)
Q Consensus       363 ~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-----~~L~  437 (670)
                      +.++++++.||.|++|++............                  .........+...+..++|.+++     .+++
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFE------------------KLDLLDSDMKKHSFWALKWGASNDRLLSHRLV  140 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEE------------------EECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeecc------------------ccceeeeccCCCceEEEEEecCCCcccccEEE
Confidence            457889999999999997642211100000                  00001112355678888888764     5789


Q ss_pred             EEeCCCeEEEEeCCCCce------------------eEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 005913          438 SSSADTTIRLWSTKLNAN------------------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR  499 (670)
Q Consensus       438 s~s~Dg~I~lwd~~~~~~------------------~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~  499 (670)
                      +++.||+|++|++.....                  ......+...+.+++|+|++ +|++|+.||+|++||+.+++++.
T Consensus       141 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~  219 (393)
T d1sq9a_         141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY  219 (393)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred             EEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc
Confidence            999999999999753210                  01112355668899999998 89999999999999999988776


Q ss_pred             Ee------cccCCCeeEEEEcCCCCEEEEEEcCCc---EEEEECCCCcEEEEEe-------------cCCCCeEEEEEcC
Q 005913          500 IM------AGHLSDVDCVRWHINCNYIATGSSDKT---VRLWDVSSGECVRIFI-------------GHRSMILSLAMSP  557 (670)
Q Consensus       500 ~~------~~~~~~v~~v~~~p~~~~l~tgs~dg~---I~iwd~~~~~~~~~~~-------------~h~~~I~~l~~sp  557 (670)
                      .+      .+|...|.+++|+|+|++|++|+.|++   |++||+.+++++..+.             +|.+.|++++|+|
T Consensus       220 ~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp  299 (393)
T d1sq9a_         220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND  299 (393)
T ss_dssp             EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred             ccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC
Confidence            54      468899999999999999999999874   9999999999887764             7999999999999


Q ss_pred             CCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceE----EEEEcCCCCEEEEEE
Q 005913          558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW----TLAYSCEGSLLASGS  608 (670)
Q Consensus       558 ~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~----sl~~s~~g~~l~sgs  608 (670)
                      +|++|++|+.||+|++||+.+++++..+.+|...|.    .++|++++..+++++
T Consensus       300 d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            999999999999999999999999999999987765    467777777665443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=3e-26  Score=237.92  Aligned_cols=262  Identities=9%  Similarity=-0.000  Sum_probs=203.8

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCC
Q 005913          356 CASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD  434 (670)
Q Consensus       356 ~l~fs~-d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  434 (670)
                      .-.||| ||+++|+++ +|.|.+|++...                             .... .+|...|++++|+|||+
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~-----------------------------~~~~-~~~~~~v~~~~~spDg~   55 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT-----------------------------YVLK-VPEPLRIRYVRRGGDTK   55 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSS-----------------------------BEEE-CSCCSCEEEEEECSSSE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCC-----------------------------cEEE-ccCCCCEEEEEECCCCC
Confidence            467999 999999985 689999998641                             1122 36899999999999999


Q ss_pred             EEEEEeCCC--eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEE
Q 005913          435 FILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR  512 (670)
Q Consensus       435 ~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~  512 (670)
                      +|++++.+.  .|++||+.++. ...+..|...|.+++|+|+|+++++++.++.+++|++.+++....+..|...+.+++
T Consensus        56 ~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (360)
T d1k32a3          56 VAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT  134 (360)
T ss_dssp             EEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCc-EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchh
Confidence            998776553  79999998765 446778999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEE----------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee-
Q 005913          513 WHINCNYIATGS----------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-  581 (670)
Q Consensus       513 ~~p~~~~l~tgs----------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~-  581 (670)
                      |+|+|++|+.++          .++.+++||+.+++.... ..+...+.+++|+|+|++|++++.++.+.+||...... 
T Consensus       135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~  213 (360)
T d1k32a3         135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS  213 (360)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             hccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEccccccccee
Confidence            999999998754          344699999998876654 45677889999999999999999999999998654321 


Q ss_pred             ------eEEeeCC------------------------------------CcceEEEEEcCCC-------------CEEEE
Q 005913          582 ------VTPLMGH------------------------------------TSCVWTLAYSCEG-------------SLLAS  606 (670)
Q Consensus       582 ------~~~~~~h------------------------------------~~~V~sl~~s~~g-------------~~l~s  606 (670)
                            ...+..|                                    .+....+...+++             .++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (360)
T d1k32a3         214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG  293 (360)
T ss_dssp             CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHC
T ss_pred             eccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEe
Confidence                  1111111                                    1112223322222             23455


Q ss_pred             EECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          607 GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       607 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      ++.++.|++||+.+.+.                   ..+...|.+++|||||+.|++++.||+
T Consensus       294 ~~~~~~i~~~d~~~~~~-------------------~~~~~~v~~~~~SpDG~~l~~~~~Dg~  337 (360)
T d1k32a3         294 APEKGVLLKYDVKTRKV-------------------TEVKNNLTDLRLSADRKTVMVRKDDGK  337 (360)
T ss_dssp             CCCCEEEEEEETTTCCE-------------------EEEEEEEEEEEECTTSCEEEEEETTSC
T ss_pred             cCCCCEEEEEECCCCeE-------------------EEecCCcCEEEECCCCCEEEEEECCCe
Confidence            66778899999876432                   122346899999999999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.7e-25  Score=224.42  Aligned_cols=243  Identities=18%  Similarity=0.190  Sum_probs=197.6

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+...      ....|.+.|.+++|++++ .+++++.|++|++|++...                         
T Consensus        30 Dg~v~~Wd~~~------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------------------------   77 (287)
T d1pgua2          30 DGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------------------------   77 (287)
T ss_dssp             TSCEEETTTTE------EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------------------------
T ss_pred             CCeEEEEECCC------CCCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------------------------
Confidence            45788887542      235778899999999765 5788889999999986530                         


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCC-cE
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-TA  487 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg-~v  487 (670)
                                .....+.++++++++..+++++ ++.+.+|+..++..+..+..+. ++  .++++++..+++++.++ .+
T Consensus        78 ----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          78 ----------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNS-PG--SAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             ----------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECSS-CE--EEEEECSSEEEEEETTTSCE
T ss_pred             ----------ccccceeeeeeccCCceEEEee-cccceeeeccceeeeeeccccc-ee--eeeeccCcceeeecccccee
Confidence                      1234567788998887777665 5678999999888887776543 33  46778888998888775 79


Q ss_pred             EEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEE-EEecCCCCeEEEEEcCC-------
Q 005913          488 RIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPD-------  558 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~sp~-------  558 (670)
                      ++|++...+....+. .|...+.+++|+|++.+|++|+.||.|++||+.++.... .+.+|..+|.+++|+|.       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             eeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccc
Confidence            999998766555544 577889999999999999999999999999999988764 46789999999999874       


Q ss_pred             ---CCEEEEEECCCeEEEEeCCC-CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeC
Q 005913          559 ---GRYMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV  618 (670)
Q Consensus       559 ---g~~l~sg~~dg~I~iwDl~~-~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~  618 (670)
                         +.+|++|+.||.|++||+.+ ++.+..+.+|.+.|++++|+|++ .|++++.||+|++|++
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence               46899999999999999976 55677778999999999999986 5899999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-24  Score=216.22  Aligned_cols=248  Identities=26%  Similarity=0.529  Sum_probs=201.2

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+.... .+..++.+|.+.|+|++|  ++++|++|+.||.|++|++.....                       
T Consensus        34 Dg~i~vWd~~~~-~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~-----------------------   87 (293)
T d1p22a2          34 DNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-----------------------   87 (293)
T ss_dssp             SSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE-----------------------
T ss_pred             CCeEEEEECCCC-cEEEEEecCCCCEeeeec--ccceeecccccccccccccccccc-----------------------
Confidence            356888976543 345677889999999987  578999999999999999875221                       


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeeCCCccEeEEEEecCCCEEEEEECCC
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFASSSHDR  485 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg  485 (670)
                           ......+...  ...+.+....++++..++.+++|+......   ...+..|...|..+.+.  ...+++++.|+
T Consensus        88 -----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~  158 (293)
T d1p22a2          88 -----LNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR  158 (293)
T ss_dssp             -----EEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             -----cccccccccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCC
Confidence                 1111222222  234555677899999999999999987654   34456788888877775  45788999999


Q ss_pred             cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      .+++||+++++.+..+.++...+..+.++  +.++++++.||.|++||++++..+..+.+|...+.+  +++++.+|++|
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg  234 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSG  234 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEE
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEE
Confidence            99999999999999999998888888775  568999999999999999999999999999888765  56678899999


Q ss_pred             ECCCeEEEEeCCC---------CeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          566 DEDGTIMMWDLAS---------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       566 ~~dg~I~iwDl~~---------~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      +.||.|++||+.+         ..++..+.+|.+.|++++|+  +.+|++||.||+|+|||
T Consensus       235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             cCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            9999999999743         34677888999999999995  67899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.2e-25  Score=226.34  Aligned_cols=257  Identities=12%  Similarity=0.050  Sum_probs=193.9

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---EEeeCCCccEeEEEEecC-CCEEEEEECCCcEE
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTAR  488 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~l~~sp~-g~~l~s~s~dg~v~  488 (670)
                      .+....+|...|++|+|+|++++|++||.||+|+|||+.+....   ....+|..+|.+++|+|+ +.+|++|+.||+|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            45567899999999999999999999999999999999766543   333469999999999996 55799999999999


Q ss_pred             EEECCCCceeEEecccCCCe-eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE----ecC--CCCeEEEEEcCCCCE
Q 005913          489 IWSMDRIQPLRIMAGHLSDV-DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF----IGH--RSMILSLAMSPDGRY  561 (670)
Q Consensus       489 lwd~~~~~~~~~~~~~~~~v-~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~----~~h--~~~I~~l~~sp~g~~  561 (670)
                      +|++...........+...+ ....+.++...+++++.++++++||++++......    ..+  ......+.+.+.+..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            99999887777766554444 45556678899999999999999998755433222    222  224556778888999


Q ss_pred             EEEEECCCeEEEEeCCCCeeeEE---eeCCCcceEEEEEcC-CCCEEEEEECCCcEEEEeCCCCccccccccccCCcccc
Q 005913          562 MASGDEDGTIMMWDLASGRCVTP---LMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR  637 (670)
Q Consensus       562 l~sg~~dg~I~iwDl~~~~~~~~---~~~h~~~V~sl~~s~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  637 (670)
                      +++++.||.|++||+........   ...+...+.+..+.+ ++..+++++.||.+.+|++...................
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence            99999999999999987654332   234445566655544 67899999999999999988765433222111111112


Q ss_pred             cccccCCCCCCeEEEEEecCCcEEEEeeCCCC
Q 005913          638 SLKTLPTKSTPVYSLQFSRRNLLFAAGALSKT  669 (670)
Q Consensus       638 ~~~~~~~~~~~V~~l~fs~~~~~La~gs~dgs  669 (670)
                      .......+..+|.+++|+|++.+||+|+.||+
T Consensus       243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             eccCCCcccccceeEEecCCccEEEEECCCCE
Confidence            23344566778999999999999999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.9e-25  Score=230.45  Aligned_cols=258  Identities=9%  Similarity=0.055  Sum_probs=200.9

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      +..+++|+.......   ...|...|++++|||||++|++++.+.  .|++|++.+                        
T Consensus        23 ~g~v~v~d~~~~~~~---~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~------------------------   75 (360)
T d1k32a3          23 RGQAFIQDVSGTYVL---KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT------------------------   75 (360)
T ss_dssp             TTEEEEECTTSSBEE---ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT------------------------
T ss_pred             CCeEEEEECCCCcEE---EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC------------------------
Confidence            457788876544332   246888999999999999998766543  699999875                        


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE----
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----  482 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s----  482 (670)
                           .....+..|.+.|.+++|+|++++|++++.++.+++|++.++.....+..|...+.+++|+|+|++|+.++    
T Consensus        76 -----~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~  150 (360)
T d1k32a3          76 -----GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH  150 (360)
T ss_dssp             -----CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             -----CcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccc
Confidence                 13345678999999999999999999999999999999999999999999999999999999999998764    


Q ss_pred             ------CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcE-------EEEEecC---
Q 005913          483 ------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-------VRIFIGH---  546 (670)
Q Consensus       483 ------~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~-------~~~~~~h---  546 (670)
                            .++.+++|++.+++... +..+...+.+++|+|+|++|++++.++.+++||......       +.....|   
T Consensus       151 ~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  229 (360)
T d1k32a3         151 GETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS  229 (360)
T ss_dssp             STTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             cceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCc
Confidence                  34569999998876544 445677889999999999999999999999998754321       1111111   


Q ss_pred             ---------------------------------CCCeEEEEEcCCCC-------------EEEEEECCCeEEEEeCCCCe
Q 005913          547 ---------------------------------RSMILSLAMSPDGR-------------YMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       547 ---------------------------------~~~I~~l~~sp~g~-------------~l~sg~~dg~I~iwDl~~~~  580 (670)
                                                       .+....+...+++.             ++++++.++.|++||+.+++
T Consensus       230 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  309 (360)
T d1k32a3         230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK  309 (360)
T ss_dssp             CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred             cccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe
Confidence                                             11222333333322             34455678899999998876


Q ss_pred             eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      ..    .|.+.|.+++|||||++|++++.||.|++||+..+..
T Consensus       310 ~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         310 VT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             EE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            43    3446799999999999999999999999999988764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=4.8e-22  Score=213.29  Aligned_cols=265  Identities=12%  Similarity=0.055  Sum_probs=186.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCC
Q 005913          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT  443 (670)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg  443 (670)
                      -+++++..||.|+|||+.+                            .+....+..| ..+.+++|||||++|++++.|+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t----------------------------~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~   83 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDS----------------------------KKIVKVIDTG-YAVHISRMSASGRYLLVIGRDA   83 (426)
T ss_dssp             EEEEEETTTTEEEEEETTT----------------------------CSEEEEEECC-SSEEEEEECTTSCEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCC----------------------------CcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCC
Confidence            3557788899999999876                            2344556666 4589999999999999999999


Q ss_pred             eEEEEeCCCCceeEEe-----eCCCccEeEEEEecCCCEEEEE-ECCCcEEEEECCCCceeEEecccCCCeeE-------
Q 005913          444 TIRLWSTKLNANLVCY-----KGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDC-------  510 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~-----~~h~~~V~~l~~sp~g~~l~s~-s~dg~v~lwd~~~~~~~~~~~~~~~~v~~-------  510 (670)
                      +|++||+.+++.....     .+|...+.++.|+|||++++++ ..++++++||..++.+......|...+..       
T Consensus        84 ~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             CEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence            9999999988764432     2466667788889999987555 58899999999999988887766554444       


Q ss_pred             ----EEEcCCCCEEEEEEc-CCcEEEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCC----
Q 005913          511 ----VRWHINCNYIATGSS-DKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG----  579 (670)
Q Consensus       511 ----v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~----  579 (670)
                          +.+++++..++.... .+.+.+++...+.. .....++...+..++|+|+|++++++. .+..+.+||..++    
T Consensus       164 ~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~  243 (426)
T d1hzua2         164 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  243 (426)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEE
Confidence                444555554444333 24455555544432 223345677788999999999877765 3344555554332    


Q ss_pred             --------------------------------------------------eeeEEeeCCCcceEEEEEcCCCCEEEE---
Q 005913          580 --------------------------------------------------RCVTPLMGHTSCVWTLAYSCEGSLLAS---  606 (670)
Q Consensus       580 --------------------------------------------------~~~~~~~~h~~~V~sl~~s~~g~~l~s---  606 (670)
                                                                        +....+.+|...+.+++|+|++++|++   
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~  323 (426)
T d1hzua2         244 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT  323 (426)
T ss_dssp             EEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCT
T ss_pred             EeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeec
Confidence                                                              334456678888999999999999994   


Q ss_pred             ----EECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEE
Q 005913          607 ----GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       607 ----gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~  663 (670)
                          ++.|++|+|||+.++.........      .....+..+...|.+++|||||+.+.+
T Consensus       324 ~~~s~~~~~tv~vwd~~t~~~~~~~~~~------~~~~~~~~~~~rv~~~~fSpDGk~i~v  378 (426)
T d1hzua2         324 FNPDARISQSVAVFDLKNLDAKYQVLPI------AEWADLGEGAKRVVQPEYNKRGDEVWF  378 (426)
T ss_dssp             TCSSHHHHTCEEEEETTCTTSCCEEECH------HHHHCCCSSCCCEEEEEECSSSSEEEE
T ss_pred             CCCCcccCCEEEEEECCCCCcCeEEecc------chhcccCCCCccEEEEEECCCCCEEEE
Confidence                556889999999987654322110      011234455667999999999986643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.1e-21  Score=210.54  Aligned_cols=270  Identities=11%  Similarity=0.069  Sum_probs=189.5

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+++|+...... ..+ +..+..+..++|||||++|++++.||+|++||+.+......                    
T Consensus        41 dg~v~vwD~~t~~~-~~~-l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~--------------------   98 (426)
T d1hzua2          41 AGQIALVDGDSKKI-VKV-IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--------------------   98 (426)
T ss_dssp             TTEEEEEETTTCSE-EEE-EECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--------------------
T ss_pred             CCEEEEEECCCCcE-EEE-EeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE--------------------
Confidence            45788887665432 223 34456799999999999999999999999999986332111                    


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEE-----------ecCCC
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF-----------NPQGH  476 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~-----------sp~g~  476 (670)
                         ..+....+|.+.+.+++|+|||++++ ++..++++++||..++.......+|...+....+           ++++.
T Consensus        99 ---~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~  175 (426)
T d1hzua2          99 ---AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  175 (426)
T ss_dssp             ---EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             ---EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence               12233446778888899999999875 4558899999999999988888776655544444           44444


Q ss_pred             EEEEEEC-CCcEEEEECCCCceeE-EecccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCC----------------
Q 005913          477 YFASSSH-DRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSG----------------  537 (670)
Q Consensus       477 ~l~s~s~-dg~v~lwd~~~~~~~~-~~~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~----------------  537 (670)
                      .++.... .+.+.+++........ ...++...+..++|+|++++++++.. +..+.+|+..++                
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T d1hzua2         176 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  255 (426)
T ss_dssp             EEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred             EEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence            4443332 2344444444433222 23356677888999999988777653 334555554433                


Q ss_pred             --------------------------------------cEEEEEecCCCCeEEEEEcCCCCEEEE-------EECCCeEE
Q 005913          538 --------------------------------------ECVRIFIGHRSMILSLAMSPDGRYMAS-------GDEDGTIM  572 (670)
Q Consensus       538 --------------------------------------~~~~~~~~h~~~I~~l~~sp~g~~l~s-------g~~dg~I~  572 (670)
                                                            +....+.+|...+..++|+|+|++|++       +..+++|+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~  335 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA  335 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence                                                  334456678888999999999999995       45678999


Q ss_pred             EEeCCCCeeeEEee---------CCCcceEEEEEcCCCCEEEE-E----ECCCcEEEEeCCCCcc
Q 005913          573 MWDLASGRCVTPLM---------GHTSCVWTLAYSCEGSLLAS-G----SADCTVKLWDVTTSTK  623 (670)
Q Consensus       573 iwDl~~~~~~~~~~---------~h~~~V~sl~~s~~g~~l~s-g----s~Dg~I~iwd~~~~~~  623 (670)
                      +||+.+++...++.         .|...|.+++|||||++++. +    +.+|.|+|||..+.+.
T Consensus       336 vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             EEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             EEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence            99999988765542         45667999999999997643 3    3578899999988753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.4e-19  Score=182.17  Aligned_cols=260  Identities=15%  Similarity=0.127  Sum_probs=201.3

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      +.+.+|+......  .........+..++|||||++|+ +++.++.|++||+.+.                         
T Consensus        12 ~~v~v~D~~t~~~--~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~-------------------------   64 (301)
T d1l0qa2          12 DNISVIDVTSNKV--TATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-------------------------   64 (301)
T ss_dssp             TEEEEEETTTTEE--EEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-------------------------
T ss_pred             CEEEEEECCCCeE--EEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-------------------------
Confidence            3566666544432  23344456789999999999875 6678899999998752                         


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCCc
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRT  486 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg~  486 (670)
                         .....+..|. .+..++|++++..++ ++..++.+.+|+..+++....+..+. ...++.|+|++..++.+ ..++.
T Consensus        65 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2          65 ---NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             ---EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred             ---ceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeeeeccccc
Confidence               2334444454 468899999998655 55677899999999998888877654 56789999999887554 56788


Q ss_pred             EEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcC-CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       487 v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      +.+|+..+...+..+..+ ..+.+++++|++..+++++.+ +.+.+|+............+ ..+..++|+++|..++.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~  217 (301)
T d1l0qa2         140 VSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVT  217 (301)
T ss_dssp             EEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEE
T ss_pred             eeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccc
Confidence            999999999888877744 568899999999998888765 56778887777776666544 567889999999988766


Q ss_pred             EC---CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEE-EEEECCCcEEEEeCCCCccc
Q 005913          566 DE---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       566 ~~---dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l-~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      +.   ++.|.+||+.+++.+..+..+ ..+++++|+|||++| ++++.|++|++||+.+++..
T Consensus       218 ~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            43   468999999999998887654 457999999999976 57778999999999987643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.6e-21  Score=209.76  Aligned_cols=308  Identities=8%  Similarity=-0.012  Sum_probs=209.9

Q ss_pred             ccceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCC
Q 005913          329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN  408 (670)
Q Consensus       329 ~~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (670)
                      ...+.+|+.....+.. ++ .....+..++|||||+++++++.||.|++||+.+.....                     
T Consensus        41 ~g~v~v~D~~t~~v~~-~~-~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~---------------------   97 (432)
T d1qksa2          41 AGQIALIDGSTYEIKT-VL-DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---------------------   97 (432)
T ss_dssp             TTEEEEEETTTCCEEE-EE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---------------------
T ss_pred             CCEEEEEECCCCcEEE-EE-eCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE---------------------
Confidence            3467788755443322 33 334579999999999999999999999999987532211                     


Q ss_pred             CCccceeeeecCccCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCC-----------CccEeEEEEecCCC
Q 005913          409 GRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQFNPQGH  476 (670)
Q Consensus       409 ~~~~~~~~~~~h~~~V~~l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~l~~sp~g~  476 (670)
                        ...+....+|.+.+.+..|+|||++| ++++.+++|++||..+++.+..+..|           ......+.++|+|.
T Consensus        98 --~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2          98 --VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             --EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             --EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence              11223334677778888899999986 67888999999999999988877654           33456788999988


Q ss_pred             EEE-EEECCCcEEEEECCCCceeEEec-ccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCCCcEEEEEec-----CCC
Q 005913          477 YFA-SSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIG-----HRS  548 (670)
Q Consensus       477 ~l~-s~s~dg~v~lwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~-----h~~  548 (670)
                      +++ +...++.+.+|+..+.+...... .+...+.+++|+|+|+++++++. ++.+.++|..+++.+..+..     |..
T Consensus       176 ~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~  255 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG  255 (432)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred             EEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccC
Confidence            765 45567899999998877554433 34567889999999998888775 45899999999888776642     333


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          549 MILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       549 ~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      ......+...+...++.. .++.|.+|+.....    ...|...|....++|++..+++++.+++.++|...........
T Consensus       256 ~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~  331 (432)
T d1qksa2         256 RGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI  331 (432)
T ss_dssp             TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHH
T ss_pred             cccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCe
Confidence            444555555555555543 47889999876543    2346666777778888777888888888888875543221100


Q ss_pred             ------ccc----cC-C-ccccc-----ccccCCCCCCeEEEEEecCCcEEEEee
Q 005913          628 ------EEK----SG-T-NRLRS-----LKTLPTKSTPVYSLQFSRRNLLFAAGA  665 (670)
Q Consensus       628 ------~~~----~~-~-~~~~~-----~~~~~~~~~~V~~l~fs~~~~~La~gs  665 (670)
                            ...    .+ . .....     ...+..+...|.+++|||||+.++++.
T Consensus       332 ~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~  386 (432)
T d1qksa2         332 SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSV  386 (432)
T ss_dssp             HTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEE
T ss_pred             eeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEE
Confidence                  000    00 0 00000     012334556799999999998886654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=3.9e-19  Score=178.88  Aligned_cols=254  Identities=13%  Similarity=0.099  Sum_probs=196.4

Q ss_pred             EEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEE-EEeCCCeE
Q 005913          367 AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTI  445 (670)
Q Consensus       367 a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~-s~s~Dg~I  445 (670)
                      ++++.|+.|.|||+.+.                            +....+. ....+.+++|+|+|++|+ +++.++.|
T Consensus         6 V~~~~~~~v~v~D~~t~----------------------------~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i   56 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN----------------------------KVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDV   56 (301)
T ss_dssp             EEETTTTEEEEEETTTT----------------------------EEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             EEECCCCEEEEEECCCC----------------------------eEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCEE
Confidence            45678999999998762                            2222232 235578999999999874 66788999


Q ss_pred             EEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEE-ECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEE-
Q 005913          446 RLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-  523 (670)
Q Consensus       446 ~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tg-  523 (670)
                      ++||+.+++.+..+..+.. +..+.|++++.+++++ ..++.+.+|+..+++....+..+ ..+.++.|+|+++.++++ 
T Consensus        57 ~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          57 SIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             EEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeee
Confidence            9999999999998887764 6789999999876554 56779999999999888877754 677899999999987654 


Q ss_pred             EcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECC-CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC
Q 005913          524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS  602 (670)
Q Consensus       524 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~d-g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~  602 (670)
                      ..++.+.+|+..++..+..+..+ ..+.+++++|++..+++++.+ +.+.+|+............+ ..+..++|++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~  212 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGT  212 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSS
T ss_pred             ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeecccccc
Confidence            45788999999999998887655 557899999999988887755 67778888777776666544 4578899999999


Q ss_pred             EEEEEEC---CCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE-EEeeCCCC
Q 005913          603 LLASGSA---DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF-AAGALSKT  669 (670)
Q Consensus       603 ~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L-a~gs~dgs  669 (670)
                      .++.++.   +++|++||+.++..               +..++.+ ..+.+++|+|+|+.| ++++.+++
T Consensus       213 ~~~v~~~~~~~~~v~v~D~~t~~~---------------~~~~~~~-~~~~~va~spdg~~l~va~~~~~~  267 (301)
T d1l0qa2         213 KAYVTNVDKYFNTVSMIDTGTNKI---------------TARIPVG-PDPAGIAVTPDGKKVYVALSFCNT  267 (301)
T ss_dssp             EEEEEEECSSCCEEEEEETTTTEE---------------EEEEECC-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             ccccccccceeeeeeeeecCCCeE---------------EEEEcCC-CCEEEEEEeCCCCEEEEEECCCCe
Confidence            8876653   46899999988643               2233332 357999999999876 56666653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=4.2e-20  Score=188.90  Aligned_cols=228  Identities=12%  Similarity=0.130  Sum_probs=180.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee--cCccCEEEEEEcCCCCEE-EEEe
Q 005913          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSGPVYSASFSPLGDFI-LSSS  440 (670)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~L-~s~s  440 (670)
                      .++++++.|++|+|||+.+.                            .....+.  .+...+.+++|+|||+++ ++++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~----------------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~   53 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM----------------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVN   53 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT----------------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEET
T ss_pred             eEEEEEcCCCEEEEEECCCC----------------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEEC
Confidence            47999999999999999762                            2223332  234567889999999987 4667


Q ss_pred             CCCeEEEEeCCCCceeEEeeCCC-----ccEeEEEEecCCCEEEEEE------------CCCcEEEEECCCCceeEEecc
Q 005913          441 ADTTIRLWSTKLNANLVCYKGHN-----YPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~-----~~V~~l~~sp~g~~l~s~s------------~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      .++.|.+||+.+++.+..+..+.     ..+..++|+|++.++++++            .+..+.+||..++.....+..
T Consensus        54 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  133 (337)
T d1pbyb_          54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc
Confidence            89999999999999888877653     3456799999999998876            467899999999988888774


Q ss_pred             cCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEE----------------------------------------
Q 005913          504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF----------------------------------------  543 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~----------------------------------------  543 (670)
                       ...+.+++|+|+|+++++++.  .+.+||..+++....+                                        
T Consensus       134 -~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (337)
T d1pbyb_         134 -PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID  210 (337)
T ss_dssp             -CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred             -cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccc
Confidence             466889999999999999864  4667887665443322                                        


Q ss_pred             --------------------------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEE
Q 005913          544 --------------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY  597 (670)
Q Consensus       544 --------------------------~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~  597 (670)
                                                ..+...+.+++++|++.+++++  ++.|++||+.+++.+..+. +...+.+++|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~  287 (337)
T d1pbyb_         211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNV  287 (337)
T ss_dssp             TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred             eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEE
Confidence                                      1233455667788888887766  4889999999999998875 5667899999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCcccc
Q 005913          598 SCEGSLLASGSADCTVKLWDVTTSTKVL  625 (670)
Q Consensus       598 s~~g~~l~sgs~Dg~I~iwd~~~~~~~~  625 (670)
                      +|||++|++++.||+|+|||..+.+...
T Consensus       288 s~dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         288 STDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             CTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            9999999999999999999999876553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=2.3e-19  Score=183.94  Aligned_cols=240  Identities=12%  Similarity=0.058  Sum_probs=171.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeee-cCccCEEEEEEcCCCCE
Q 005913          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSGPVYSASFSPLGDF  435 (670)
Q Consensus       357 l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~  435 (670)
                      ++|++++++|++++.++.|.|||+.+.                            +....+. .|...+.+++|+|||++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~----------------------------~~~~t~~~~~~~~p~~l~~spDG~~   53 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD----------------------------TVYKSCVMPDKFGPGTAMMAPDNRT   53 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT----------------------------EEEEEEECSSCCSSCEEEECTTSSE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC----------------------------CEEEEEEcCCCCCcceEEECCCCCE
Confidence            468999999999999999999999862                            2334443 45567789999999998


Q ss_pred             EE-EEeCCCeEEEEeCCCCceeEEeeCCC------ccEeEEEEecCCCEEEEEE------------CCCcEEEEECCCCc
Q 005913          436 IL-SSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQ  496 (670)
Q Consensus       436 L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s------------~dg~v~lwd~~~~~  496 (670)
                      ++ +++.++.|++||+.+++.+..+....      ..+..++|+|+|.++++++            .++.+.+|+..+++
T Consensus        54 l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~  133 (346)
T d1jmxb_          54 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  133 (346)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             EEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce
Confidence            74 56678999999999998877665422      2456899999999988775            46788999887654


Q ss_pred             eeEEeccc--CCCeeEEEEcCCCCEEEE----------------------------------------------------
Q 005913          497 PLRIMAGH--LSDVDCVRWHINCNYIAT----------------------------------------------------  522 (670)
Q Consensus       497 ~~~~~~~~--~~~v~~v~~~p~~~~l~t----------------------------------------------------  522 (670)
                      ....+..+  ...+..+.+++++..+++                                                    
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (346)
T d1jmxb_         134 EAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  213 (346)
T ss_dssp             GBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             eeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeee
Confidence            43222111  122333333333332222                                                    


Q ss_pred             ------------EEcCCcEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCC
Q 005913          523 ------------GSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT  589 (670)
Q Consensus       523 ------------gs~dg~I~iwd~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~  589 (670)
                                  +..++.+.+||..++.... .+..|...+.++.+++++.+++.+.. +.|.+||..+++.+..+. +.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~  291 (346)
T d1jmxb_         214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LD  291 (346)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CS
T ss_pred             eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CC
Confidence                        1122234555555544332 23356667788888888888777654 679999999999888775 44


Q ss_pred             cceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccc
Q 005913          590 SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK  626 (670)
Q Consensus       590 ~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~  626 (670)
                      ..+.+++|+|||++|++++.||.|+|||+.+.+.+..
T Consensus       292 ~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEE
Confidence            5789999999999999999999999999998776543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1.5e-18  Score=186.16  Aligned_cols=229  Identities=11%  Similarity=0.056  Sum_probs=173.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEeCCC
Q 005913          364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT  443 (670)
Q Consensus       364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg  443 (670)
                      -++++.+.+|.|.|||..+                            .+....+..| ..+..++|||||+++++++.||
T Consensus        33 ~~~v~~~d~g~v~v~D~~t----------------------------~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg   83 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST----------------------------YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDG   83 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT----------------------------CCEEEEEECS-SCEEEEEECTTSCEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCC----------------------------CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCC
Confidence            3457888999999999876                            2344555555 4699999999999999999999


Q ss_pred             eEEEEeCCCCceeEE--e---eCCCccEeEEEEecCCCEE-EEEECCCcEEEEECCCCceeEEeccc-----------CC
Q 005913          444 TIRLWSTKLNANLVC--Y---KGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRIQPLRIMAGH-----------LS  506 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~--~---~~h~~~V~~l~~sp~g~~l-~s~s~dg~v~lwd~~~~~~~~~~~~~-----------~~  506 (670)
                      +|++||+.+++....  +   .+|...+++..|+|||+++ ++++.++++++||..+++++..+..|           ..
T Consensus        84 ~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~  163 (432)
T d1qksa2          84 KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP  163 (432)
T ss_dssp             EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred             CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC
Confidence            999999988764322  2   2456667777888999986 67888999999999999988877654           34


Q ss_pred             CeeEEEEcCCCCEEE-EEEcCCcEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCeeeE
Q 005913          507 DVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVT  583 (670)
Q Consensus       507 ~v~~v~~~p~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~~  583 (670)
                      ....+.++|++..++ +...++.|.+||..+++...... .+...+.+++|+|+|+++++++ .++.+.++|..+++.+.
T Consensus       164 ~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         164 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             ceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence            456788999998765 45567899999999887655433 4556789999999999877766 45689999999988877


Q ss_pred             EeeC-----CCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCCC
Q 005913          584 PLMG-----HTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTS  621 (670)
Q Consensus       584 ~~~~-----h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~~  621 (670)
                      .+..     |........+...+...++.. .++.|.+|+....
T Consensus       244 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         244 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             EeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence            6542     344445556655555555554 4789999987654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.5e-17  Score=169.55  Aligned_cols=215  Identities=14%  Similarity=0.079  Sum_probs=167.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCC--CccEeEEEEecCCCEEE-EEECCCcEEEEECCCCceeEEecccCC----
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFA-SSSHDRTARIWSMDRIQPLRIMAGHLS----  506 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~g~~l~-s~s~dg~v~lwd~~~~~~~~~~~~~~~----  506 (670)
                      +++++++.|++|++||+.+++.+..+..+  ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57999999999999999999998887653  45578999999999874 566889999999999999888765533    


Q ss_pred             -CeeEEEEcCCCCEEEEEE------------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 005913          507 -DVDCVRWHINCNYIATGS------------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM  573 (670)
Q Consensus       507 -~v~~v~~~p~~~~l~tgs------------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~i  573 (670)
                       .+..++|+|+++++++++            .+..+.+||..++.....+..+ ..+.+++|+|+|+++++++.+  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cce
Confidence             356789999999998876            3578999999999998888654 568899999999999998654  667


Q ss_pred             EeCCCCeeeEEe------------------------------------------------------------------eC
Q 005913          574 WDLASGRCVTPL------------------------------------------------------------------MG  587 (670)
Q Consensus       574 wDl~~~~~~~~~------------------------------------------------------------------~~  587 (670)
                      ||..+++....+                                                                  ..
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            887665443322                                                                  12


Q ss_pred             CCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeCC
Q 005913          588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALS  667 (670)
Q Consensus       588 h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~d  667 (670)
                      +...+..+.+++++.+++++  ++.|++||+.++...               ..+. ....+.+++|+|+|.+|++|+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~---------------~~~~-~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI---------------KRVP-LPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE---------------EEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred             CCcceEEEEecccceEEEEc--cccEEEEECCCCcEE---------------EEEc-CCCCEEEEEECCCCCEEEEEeCC
Confidence            23345556777788777665  578999999886543               2222 24568899999999999999888


Q ss_pred             CC
Q 005913          668 KT  669 (670)
Q Consensus       668 gs  669 (670)
                      |+
T Consensus       301 ~~  302 (337)
T d1pbyb_         301 GD  302 (337)
T ss_dssp             SE
T ss_pred             Cc
Confidence            64

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1e-16  Score=163.48  Aligned_cols=265  Identities=12%  Similarity=0.193  Sum_probs=184.2

Q ss_pred             EEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe-CCC
Q 005913          365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADT  443 (670)
Q Consensus       365 ~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s-~Dg  443 (670)
                      .++++..|++|+||+++..+.                          ........|.+.|.+++|+|||++|++++ .|+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~--------------------------l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~   59 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA--------------------------LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF   59 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC--------------------------EEEEEEEECSSCCCCEEECTTSSEEEEEETTTT
T ss_pred             EEEECCCCCcEEEEEEcCCCC--------------------------eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCC
Confidence            456778999999999874211                          12233346889999999999999986554 589


Q ss_pred             eEEEEeCCCCceeEEe---eCCCccEeEEEEecCCCEEEEEEC-CCcEEEEECCCCceeEE--ecccCCCeeEEEEcCCC
Q 005913          444 TIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRI--MAGHLSDVDCVRWHINC  517 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~~~~~~~~--~~~~~~~v~~v~~~p~~  517 (670)
                      .|++|++.........   ..+...+..++|+|+|+++++++. ++.+.+|+.........  ...+...+.++.++|++
T Consensus        60 ~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~  139 (333)
T d1ri6a_          60 RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN  139 (333)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS
T ss_pred             eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc
Confidence            9999999866543332   234455778999999999999885 67899998876654433  33566778899999999


Q ss_pred             CEEEEEEc-CCcEEEEECCCCcEEEE------EecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCe----eeEEe
Q 005913          518 NYIATGSS-DKTVRLWDVSSGECVRI------FIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR----CVTPL  585 (670)
Q Consensus       518 ~~l~tgs~-dg~I~iwd~~~~~~~~~------~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~----~~~~~  585 (670)
                      +++++++. +..|.+|+.........      ..........++|++++.+++... ..+...+|+.....    .....
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  219 (333)
T d1ri6a_         140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  219 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeee
Confidence            99888775 45799999876543321      123345678999999999887655 55678888865432    11122


Q ss_pred             e------CCCcceEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCC
Q 005913          586 M------GHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRN  658 (670)
Q Consensus       586 ~------~h~~~V~sl~~s~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~  658 (670)
                      .      ........+++++++++++.+ ..++.+.+|++.........            .........+.+++|+|+|
T Consensus       220 ~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~p~~~a~spDG  287 (333)
T d1ri6a_         220 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK------------EGFQPTETQPRGFNVDHSG  287 (333)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE------------EEEEECSSSCCCEEECTTS
T ss_pred             eeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEE------------EEEeCCCCCeeEEEEeCCC
Confidence            1      123456778999999876655 45689999998775432211            1111223456789999999


Q ss_pred             cEEEEeeCC
Q 005913          659 LLFAAGALS  667 (670)
Q Consensus       659 ~~La~gs~d  667 (670)
                      ++|++++.+
T Consensus       288 k~l~va~~~  296 (333)
T d1ri6a_         288 KYLIAAGQK  296 (333)
T ss_dssp             SEEEEECTT
T ss_pred             CEEEEEECC
Confidence            988776654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=5.8e-16  Score=161.05  Aligned_cols=241  Identities=11%  Similarity=0.028  Sum_probs=171.5

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCcc
Q 005913          348 INTHNGLNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG  422 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~-----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  422 (670)
                      ..+.+++.+++++|||+.+++..     ..+.|.+||..+                            .+....+..+..
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t----------------------------g~~~~~~~~~~~   68 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS----------------------------GSILGHVNGGFL   68 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC----------------------------CCEEEEEeCCCC
Confidence            34667899999999999987642     345688888664                            223334444443


Q ss_pred             CEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeeCCCccE-------eEEEEecCCCEEEEEE--C
Q 005913          423 PVYSASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGHNYPV-------WDVQFNPQGHYFASSS--H  483 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h~~~V-------~~l~~sp~g~~l~s~s--~  483 (670)
                      +  .++|+|||++|++++          .++.|.+||+.+++.+..+..+....       ..+.|++++..+++..  .
T Consensus        69 ~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          69 P--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             c--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            3  689999999998875          45789999999999887777665443       4578899888766654  4


Q ss_pred             CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE-EEEEcCCcEEEEECCCCcEEEEEec-----------------
Q 005913          484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIG-----------------  545 (670)
Q Consensus       484 dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~-----------------  545 (670)
                      ++.+.+|+....+....    .....++.++|+++.+ ++.+.|+.+.+||...+........                 
T Consensus       147 ~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CCceEEeeccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC
Confidence            56888998877655433    3456788899988755 5677889999998765543322110                 


Q ss_pred             --------------------------------CC----------CCeEEEEEcCCCCEEE----------EEECCCeEEE
Q 005913          546 --------------------------------HR----------SMILSLAMSPDGRYMA----------SGDEDGTIMM  573 (670)
Q Consensus       546 --------------------------------h~----------~~I~~l~~sp~g~~l~----------sg~~dg~I~i  573 (670)
                                                      +.          .....++++|++..++          +...++.+.+
T Consensus       223 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence                                            00          1112345555555443          3455678999


Q ss_pred             EeCCCCeeeEEeeCCCcceEEEEEcCCCC--EEEEEECCCcEEEEeCCCCcc
Q 005913          574 WDLASGRCVTPLMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       574 wDl~~~~~~~~~~~h~~~V~sl~~s~~g~--~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      ||..+++.+..+. +...+.+++|+|||+  ++++++.|++|+|||+.+++.
T Consensus       303 ~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         303 VTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             EECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            9999999888775 566789999999998  457889999999999999764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.9e-16  Score=161.44  Aligned_cols=267  Identities=10%  Similarity=0.158  Sum_probs=186.4

Q ss_pred             ccceecCCCCC-CceeEEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCccccccCCCCCCCCCCCccccC
Q 005913          329 RNRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG  406 (670)
Q Consensus       329 ~~~~~l~~~~~-ps~~~~t~~~~~~~V~~l~fs~d~~~La~g~-~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (670)
                      .+.+++|+... .........++.+.+.+++|||||++|++++ .|+.|++|++......                    
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~--------------------   72 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA--------------------   72 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC--------------------
T ss_pred             CCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc--------------------
Confidence            35678886543 3445666778889999999999999996554 5899999998752211                    


Q ss_pred             CCCCccceeeeecCccCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeE--EeeCCCccEeEEEEecCCCEEEEEEC
Q 005913          407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSH  483 (670)
Q Consensus       407 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s~-Dg~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s~  483 (670)
                           ........+...+.+++|+|||++|++++. +++|.+|+........  ....+...+.++.++|++.++++++.
T Consensus        73 -----~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          73 -----LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             -----EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             -----EEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc
Confidence                 111222234456678999999999988875 7789999887665433  33456677889999999999888874


Q ss_pred             -CCcEEEEECCCCceeEE------ecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCc----EEEEEe------c
Q 005913          484 -DRTARIWSMDRIQPLRI------MAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE----CVRIFI------G  545 (670)
Q Consensus       484 -dg~v~lwd~~~~~~~~~------~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~----~~~~~~------~  545 (670)
                       +..+.+|+.........      ..........++|++++.+++... ..+...+|+.....    ......      .
T Consensus       148 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  227 (333)
T d1ri6a_         148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  227 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             ccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCC
Confidence             45799999876543321      123445678999999999887665 45677888765332    111221      1


Q ss_pred             CCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCeeeEEee---CCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 005913          546 HRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT  620 (670)
Q Consensus       546 h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~~~~~~~---~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~  620 (670)
                      .......+++++++++++.+ ..++.+.+|++..........   .+...+.+++|+|||++|++++ .+++|++|++..
T Consensus       228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            23456778999999977665 567899999987654433332   3445678899999999887776 458999997754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=2.9e-16  Score=161.87  Aligned_cols=240  Identities=11%  Similarity=0.050  Sum_probs=169.6

Q ss_pred             EEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          354 LNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~-----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      +.-.+.+||++.+++..     .++.|.+||..+.                            +....+..+..+  .++
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg----------------------------~~~~~~~~g~~~--~~a   53 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------RVIGMIDGGFLP--NPV   53 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------EEEEEEEECSSC--EEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC----------------------------cEEEEEECCCCC--ceE
Confidence            33346689999998753     3567999998752                            233334444333  689


Q ss_pred             EcCCCCEEEEE----------eCCCeEEEEeCCCCceeEEeeCCCc-------cEeEEEEecCCCEEEEEE--CCCcEEE
Q 005913          429 FSPLGDFILSS----------SADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNPQGHYFASSS--HDRTARI  489 (670)
Q Consensus       429 ~sp~~~~L~s~----------s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp~g~~l~s~s--~dg~v~l  489 (670)
                      |||||++|+++          +.|+.|++||+.+++.+..+..+..       ....+.|+|++.++++++  .+..+.+
T Consensus        54 ~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~  133 (355)
T d2bbkh_          54 VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGV  133 (355)
T ss_dssp             ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEE
T ss_pred             EcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeee
Confidence            99999988764          3478999999999988777654322       235689999999888775  4568899


Q ss_pred             EECCCCceeEEecccC---------------------------------------------CCeeEEEEcCCCCEEEEEE
Q 005913          490 WSMDRIQPLRIMAGHL---------------------------------------------SDVDCVRWHINCNYIATGS  524 (670)
Q Consensus       490 wd~~~~~~~~~~~~~~---------------------------------------------~~v~~v~~~p~~~~l~tgs  524 (670)
                      |+..+++.+..+..+.                                             ..+.+..+.+++..++.++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T d2bbkh_         134 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT  213 (355)
T ss_dssp             EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB
T ss_pred             eecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEec
Confidence            9998776554433211                                             1122345556666778888


Q ss_pred             cCCcEEEEECCCCcEEEE--EecC----------CCCeEEEEEcCCCCEEEEEECC----------CeEEEEeCCCCeee
Q 005913          525 SDKTVRLWDVSSGECVRI--FIGH----------RSMILSLAMSPDGRYMASGDED----------GTIMMWDLASGRCV  582 (670)
Q Consensus       525 ~dg~I~iwd~~~~~~~~~--~~~h----------~~~I~~l~~sp~g~~l~sg~~d----------g~I~iwDl~~~~~~  582 (670)
                      .++.+++|++..+.....  ...+          ......++++|++..++....+          ..|.+||..+++.+
T Consensus       214 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~  293 (355)
T d2bbkh_         214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL  293 (355)
T ss_dssp             TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred             CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE
Confidence            899999999987754321  1111          1223458899999988776543          46999999999988


Q ss_pred             EEeeCCCcceEEEEEcCCCC--EEEEEECCCcEEEEeCCCCccc
Q 005913          583 TPLMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTTSTKV  624 (670)
Q Consensus       583 ~~~~~h~~~V~sl~~s~~g~--~l~sgs~Dg~I~iwd~~~~~~~  624 (670)
                      ..+.. ...+.+++|+|||+  ++++++.|++|+|||+.+++.+
T Consensus       294 ~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         294 AKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             EEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            87763 45688999999997  4567778999999999987643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=8.8e-17  Score=164.38  Aligned_cols=223  Identities=9%  Similarity=0.074  Sum_probs=154.8

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEE-EECCCcEEEEECCCCceeEEeccc
Q 005913          427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFAS-SSHDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       427 l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s-~s~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      ++|++++++|++++.+++|.+||+.+++.+..+. .|...+.+++|+|||+++++ ++.++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4789999999999999999999999999988887 45666889999999998754 557899999999999888776533


Q ss_pred             C------CCeeEEEEcCCCCEEEEEE------------cCCcEEEEECCCCcEEEEEec--CCCCeEEEEEcCCCCEEEE
Q 005913          505 L------SDVDCVRWHINCNYIATGS------------SDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       505 ~------~~v~~v~~~p~~~~l~tgs------------~dg~I~iwd~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~s  564 (670)
                      .      ..+..++|+|+|+++++++            .++.+.+||..+++....+..  ....+..+.+++++..+++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            2      2356899999999998765            467889999887654432221  1223444555555544433


Q ss_pred             EECCCeEEEEeCCCCeeeEE------------------------------------------------------------
Q 005913          565 GDEDGTIMMWDLASGRCVTP------------------------------------------------------------  584 (670)
Q Consensus       565 g~~dg~I~iwDl~~~~~~~~------------------------------------------------------------  584 (670)
                      +   +.+.+||+.+++.+..                                                            
T Consensus       162 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
T d1jmxb_         162 G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  238 (346)
T ss_dssp             S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             C---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC
Confidence            2   2344444444333322                                                            


Q ss_pred             --------eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec
Q 005913          585 --------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR  656 (670)
Q Consensus       585 --------~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~  656 (670)
                              ...|...+.++.+++++..++.+. ++.|.+||..+++.               +..+. ....+.+++|+|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~---------------~~~~~-~~~~~~~va~s~  301 (346)
T d1jmxb_         239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKL---------------IKAAN-LDHTYYCVAFDK  301 (346)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEE---------------EEEEE-CSSCCCEEEECS
T ss_pred             CCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcE---------------EEEEc-CCCCEEEEEEcC
Confidence                    223445566666777666666554 34677887766542               22222 234689999999


Q ss_pred             CCcEEEEeeCCCC
Q 005913          657 RNLLFAAGALSKT  669 (670)
Q Consensus       657 ~~~~La~gs~dgs  669 (670)
                      ||++|++|+.+|+
T Consensus       302 DG~~l~v~~~d~~  314 (346)
T d1jmxb_         302 KGDKLYLGGTFND  314 (346)
T ss_dssp             SSSCEEEESBSSE
T ss_pred             CCCEEEEEeCCCc
Confidence            9999999998864

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=9.4e-14  Score=142.68  Aligned_cols=246  Identities=13%  Similarity=0.054  Sum_probs=158.7

Q ss_pred             cceecCCCCCCceeEEEeecCCCCEEEEEEcCCCCEEEEE----------eCCCcEEEEECCCCCccccccCCCCCCCCC
Q 005913          330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGG----------FSDSSLKVWDMAKLGQQAVSSGLQGENDTT  399 (670)
Q Consensus       330 ~~~~l~~~~~ps~~~~t~~~~~~~V~~l~fs~d~~~La~g----------~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~  399 (670)
                      ..+++|+....... .++..+  .+..++|||||++|++.          ..++.|++||+.+.............    
T Consensus        28 ~~v~v~D~~tg~~~-~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~----  100 (355)
T d2bbkh_          28 TQQFVIDGEAGRVI-GMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP----  100 (355)
T ss_dssp             EEEEEEETTTTEEE-EEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC----
T ss_pred             CeEEEEECCCCcEE-EEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc----
Confidence            45666665444322 233322  34479999999988764          34789999999864332211100000    


Q ss_pred             CCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeeCC---------------
Q 005913          400 PREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGH---------------  462 (670)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h---------------  462 (670)
                                       ..........++|+|++++++.++  .+..+.+|+..++..+..+..+               
T Consensus       101 -----------------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_         101 -----------------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             -----------------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             -----------------eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence                             000112223467888888766554  4566777877766544333221               


Q ss_pred             ------------------------------CccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE--eccc------
Q 005913          463 ------------------------------NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MAGH------  504 (670)
Q Consensus       463 ------------------------------~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~--~~~~------  504 (670)
                                                    ...+....+++++..++.++.++.+++|++..+.....  ...+      
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  243 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEe
Confidence                                          11233345666677788888899999999987654321  1111      


Q ss_pred             ----CCCeeEEEEcCCCCEEEEEEcC----------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC--EEEEEECC
Q 005913          505 ----LSDVDCVRWHINCNYIATGSSD----------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR--YMASGDED  568 (670)
Q Consensus       505 ----~~~v~~v~~~p~~~~l~tgs~d----------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~--~l~sg~~d  568 (670)
                          ......+++++++..++....+          ..|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|
T Consensus       244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCC
Confidence                1233458899999988876654          3699999999999887753 35688999999998  45667789


Q ss_pred             CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCC
Q 005913          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~  600 (670)
                      +.|++||+.+++.+.++.++......+.+..+
T Consensus       323 ~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         323 KTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             CEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            99999999999999999877655555655443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.58  E-value=3.6e-13  Score=139.52  Aligned_cols=197  Identities=13%  Similarity=0.013  Sum_probs=144.1

Q ss_pred             ecCccCEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE----------
Q 005913          418 QGHSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----------  482 (670)
Q Consensus       418 ~~h~~~V~~l~~sp~~~~L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s----------  482 (670)
                      ..+.+++.+++++|+|+.+++.     +..+.|.+||..+++.+..+..+..+  .+.|+|||+++++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            3578899999999999988764     23467999999999999888876654  699999999999875          


Q ss_pred             CCCcEEEEECCCCceeEEecccCCCe-------eEEEEcCCCCEEEEEE--cCCcEEEEECCCCcEEEEEecCCCCeEEE
Q 005913          483 HDRTARIWSMDRIQPLRIMAGHLSDV-------DCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSL  553 (670)
Q Consensus       483 ~dg~v~lwd~~~~~~~~~~~~~~~~v-------~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l  553 (670)
                      .++.|.+||..+++.+..+..+....       ..+.|+++++.+++..  .++.+.+|+..+.+.....    ....++
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  170 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCY  170 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeE
Confidence            35789999999999988877655443       4578888888776654  4567889998877655433    346788


Q ss_pred             EEcCCCCEE-EEEECCCeEEEEeCCCCeeeEEeeCCC------cceEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 005913          554 AMSPDGRYM-ASGDEDGTIMMWDLASGRCVTPLMGHT------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       554 ~~sp~g~~l-~sg~~dg~I~iwDl~~~~~~~~~~~h~------~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      .++|+|+.+ ++++.||.+.+||...+........+.      .....+.+++++. ++..+.++.+.+|+....
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAA  244 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCC
Confidence            999998755 578899999999998877665443221      1223344555443 344456667777766543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.49  E-value=1.6e-13  Score=144.15  Aligned_cols=296  Identities=10%  Similarity=0.093  Sum_probs=186.4

Q ss_pred             EEEEeCCCcEEEEECCCCCccccccCCCCCC--CCCCC---ccccCCCCCccceeeeecCccCEEEEEEcCCCCEEEEE-
Q 005913          366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN--DTTPR---EDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS-  439 (670)
Q Consensus       366 La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~s~-  439 (670)
                      +++|+.+|.|+||++................  .....   ..+..   .......-..|........++|||++|++. 
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~---~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILG---GDQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHC---SSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEe---cccccccCcccCCCcceecccCCCCEEEEEc
Confidence            5678899999999998755433322111100  00000   00000   000111123355556666778999988655 


Q ss_pred             eCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCC--EEEEEECCC-----------------cEEEEECCCCceeE
Q 005913          440 SADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGH--YFASSSHDR-----------------TARIWSMDRIQPLR  499 (670)
Q Consensus       440 s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~--~l~s~s~dg-----------------~v~lwd~~~~~~~~  499 (670)
                      ..+++|.+||+.+++....+. .+...+..++|+|+|+  |++..+.+.                 .+..+|..+.+...
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            578899999999998877665 3566789999999988  555444432                 23557888877777


Q ss_pred             EecccCCCeeEEEEcCCCCEEEEEEcC-----------------------------------------CcEEEEECCCCc
Q 005913          500 IMAGHLSDVDCVRWHINCNYIATGSSD-----------------------------------------KTVRLWDVSSGE  538 (670)
Q Consensus       500 ~~~~~~~~v~~v~~~p~~~~l~tgs~d-----------------------------------------g~I~iwd~~~~~  538 (670)
                      .+... .....++|+|+|+++++++.+                                         +.+.+++....+
T Consensus       171 qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         171 QVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            66543 467889999999999887643                                         344455545555


Q ss_pred             EEEEEecCCCCeEEEEEcCCCCEEEE-EECCCeEEEEeCCCCeee--------EEeeCCC---cceEEEEEcCCCCEEEE
Q 005913          539 CVRIFIGHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDLASGRCV--------TPLMGHT---SCVWTLAYSCEGSLLAS  606 (670)
Q Consensus       539 ~~~~~~~h~~~I~~l~~sp~g~~l~s-g~~dg~I~iwDl~~~~~~--------~~~~~h~---~~V~sl~~s~~g~~l~s  606 (670)
                      .++.+..... ...+.++|||+++++ +..+++|.+||+.+....        ..+.++.   -.....+|+++|..+.+
T Consensus       250 v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts  328 (441)
T d1qnia2         250 FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT  328 (441)
T ss_dssp             SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred             eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEc
Confidence            5555554444 578999999998754 678999999998652210        1111111   12345689999999999


Q ss_pred             EECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          607 GSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       607 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      ...|..|..|++........-...........+...++|...+.+..|+|+|++|++++.
T Consensus       329 ~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         329 LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            999999999998532111000000000000112233577777888889999999999953

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=8.5e-13  Score=137.11  Aligned_cols=243  Identities=8%  Similarity=-0.051  Sum_probs=161.4

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEE
Q 005913          356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY  425 (670)
Q Consensus       356 ~l~fs~d~~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  425 (670)
                      .++|+|||+.|++.+          .|+.|++||..+............                 ..  .  .......
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~-----------------~~--~--~~g~~p~  127 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-----------------PR--F--SVGPRVH  127 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-----------------CS--C--CBSCCTT
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc-----------------ce--e--cccCCcc
Confidence            589999999998764          367799999876433221110000                 00  0  0011123


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE----
Q 005913          426 SASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI----  500 (670)
Q Consensus       426 ~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~----  500 (670)
                      .++|+|||++|++++ .++++.+||+.+++....+..+.....   +......++..+.||++.+|++........    
T Consensus       128 ~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~  204 (368)
T d1mdah_         128 IIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA  204 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeec
Confidence            589999999988776 579999999999998888776654421   122345677778889988888765433322    


Q ss_pred             --ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cC----------CCCeEEEEEcCCCCEEEEEE
Q 005913          501 --MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GH----------RSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       501 --~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h----------~~~I~~l~~sp~g~~l~sg~  566 (670)
                        +..+...+..+.+++++..+.+.  ++.+++++...+.......  .+          .+....++++|++..++...
T Consensus       205 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         205 QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             ccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence              12344455677788887666543  5667777776554433221  10          11234578999988776653


Q ss_pred             CC---------CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC--EEEEEECCCcEEEEeCCCCcccc
Q 005913          567 ED---------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTTSTKVL  625 (670)
Q Consensus       567 ~d---------g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~--~l~sgs~Dg~I~iwd~~~~~~~~  625 (670)
                      .+         ..|.+||..+++.+..+. +...+.+++|+|||+  +++++..|++|+|||..+++...
T Consensus       283 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         283 VEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             cCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            22         359999999999888775 345788999999997  35677788999999999987543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=2.7e-12  Score=137.91  Aligned_cols=271  Identities=15%  Similarity=0.134  Sum_probs=158.9

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeec
Q 005913          349 NTHNGLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG  419 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~---------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (670)
                      .+...|.++.|||||++||.++.         ++.+.|||+.+.                             ....+..
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-----------------------------~~~~l~~  109 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-----------------------------QLITEER  109 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-----------------------------EECCSSC
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-----------------------------ccccccc
Confidence            34467999999999999998753         567889998752                             2344567


Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCC------------------CccEeEEEEecCCCEEEEE
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH------------------NYPVWDVQFNPQGHYFASS  481 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h------------------~~~V~~l~~sp~g~~l~s~  481 (670)
                      |...+..+.|||||+.||... ++.+++|+..++........+                  ......+.|||||++++..
T Consensus       110 ~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         110 IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             CCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence            888999999999999999865 678999999988765443221                  1234567899999999998


Q ss_pred             ECCCc-EEEEEC-----------------------------------CCCceeEEe-----------cccCCCeeEEEEc
Q 005913          482 SHDRT-ARIWSM-----------------------------------DRIQPLRIM-----------AGHLSDVDCVRWH  514 (670)
Q Consensus       482 s~dg~-v~lwd~-----------------------------------~~~~~~~~~-----------~~~~~~v~~v~~~  514 (670)
                      ..|.+ +..|.+                                   ..+......           ......+..+.|.
T Consensus       189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  268 (470)
T d2bgra1         189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA  268 (470)
T ss_dssp             EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred             EecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEc
Confidence            76533 433332                                   111100000           0011224567788


Q ss_pred             CCCCEEEEEE-cCC-----cEEEEECCCCcEEEEEe-------------cCCCCeEEEEEcCC--CCEEEEEECCCeEEE
Q 005913          515 INCNYIATGS-SDK-----TVRLWDVSSGECVRIFI-------------GHRSMILSLAMSPD--GRYMASGDEDGTIMM  573 (670)
Q Consensus       515 p~~~~l~tgs-~dg-----~I~iwd~~~~~~~~~~~-------------~h~~~I~~l~~sp~--g~~l~sg~~dg~I~i  573 (670)
                      +++..++... ..+     .+..+|..++.......             .+...  ...++++  +.+++.+..||..++
T Consensus       269 ~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~l  346 (470)
T d2bgra1         269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHI  346 (470)
T ss_dssp             ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEE
T ss_pred             CCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCcee
Confidence            8777555432 222     23344555555433211             11112  2234444  345566777776555


Q ss_pred             E--eCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEEECCC----cEEEEeCCCCccccccccccCCcccccc-cccCCC
Q 005913          574 W--DLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADC----TVKLWDVTTSTKVLKTEEKSGTNRLRSL-KTLPTK  645 (670)
Q Consensus       574 w--Dl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  645 (670)
                      |  +...+ ....+..+...|..+ ++++++ ++++++.++    .-.||.+.....          ....++ ..+.++
T Consensus       347 y~~~~~g~-~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~----------~~~~~lt~~~~~~  414 (470)
T d2bgra1         347 CYFQIDKK-DCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDY----------TKVTCLSCELNPE  414 (470)
T ss_dssp             EEEETTCS-CCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCT----------TCEEESSTTTSTT
T ss_pred             EEEeccCC-ceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCC----------CceeEecccccCC
Confidence            5  54443 344454455567766 333444 344554332    224555432110          111222 345577


Q ss_pred             CCCeEEEEEecCCcEEEE
Q 005913          646 STPVYSLQFSRRNLLFAA  663 (670)
Q Consensus       646 ~~~V~~l~fs~~~~~La~  663 (670)
                      ...+.+++|||+|++++.
T Consensus       415 ~~~~~s~~fSpdgky~~~  432 (470)
T d2bgra1         415 RCQYYSVSFSKEAKYYQL  432 (470)
T ss_dssp             TBCBEEEEECTTSSEEEE
T ss_pred             CCCEEEEEECCCCCEEEE
Confidence            788999999999998874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=9.6e-12  Score=133.52  Aligned_cols=145  Identities=14%  Similarity=0.194  Sum_probs=109.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913          356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (670)
Q Consensus       356 ~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (670)
                      .+.|.+|+.++..  .++.|.+||+.+.......                       ....+..|...|.++.|||||++
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~-----------------------~~~~~~~~~~~i~~~~~SpDg~~   75 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFL-----------------------ENSTFDEFGHSINDYSISPDGQF   75 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEE-----------------------CTTTTTTSSSCCCEEEECTTSSE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEE-----------------------chhhhhhccCccceeEECCCCCE
Confidence            4678899987764  5788999998864332111                       01123456788999999999999


Q ss_pred             EEEEeC---------CCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeccc--
Q 005913          436 ILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH--  504 (670)
Q Consensus       436 L~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~--  504 (670)
                      |+.++.         ++.+.+||+.+++ +..+..|...+..+.|||||+++|.. .++.+++|+..+++..+....+  
T Consensus        76 i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~  153 (470)
T d2bgra1          76 ILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE  153 (470)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred             EEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCC
Confidence            998753         5788999999776 45577788899999999999999986 5678999999988766544322  


Q ss_pred             ----------------CCCeeEEEEcCCCCEEEEEEcCC
Q 005913          505 ----------------LSDVDCVRWHINCNYIATGSSDK  527 (670)
Q Consensus       505 ----------------~~~v~~v~~~p~~~~l~tgs~dg  527 (670)
                                      .+....+.|+|+|++|+....|.
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             CcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence                            23346688999999999987653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=1.5e-11  Score=127.42  Aligned_cols=233  Identities=7%  Similarity=-0.079  Sum_probs=151.8

Q ss_pred             ceeeeecCccCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEeeCCCc-------cEeEEEEecCC
Q 005913          413 SYTLYQGHSGPVYSASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNPQG  475 (670)
Q Consensus       413 ~~~~~~~h~~~V~~l~~sp~~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp~g  475 (670)
                      ......++..+  .++|+|||+.|++.+          .|++|++||..+++.+..+..+..       ....++|+|||
T Consensus        58 ~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG  135 (368)
T d1mdah_          58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred             EEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC
Confidence            33444445444  589999999888754          367899999999988877654322       23468999999


Q ss_pred             CEEEEEE-CCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEE------EecCCC
Q 005913          476 HYFASSS-HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI------FIGHRS  548 (670)
Q Consensus       476 ~~l~s~s-~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~------~~~h~~  548 (670)
                      ++++++. .++.+.+||+.+++....+..+.....   +......++..+.||.+..|++........      +..+..
T Consensus       136 k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (368)
T d1mdah_         136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccc
Confidence            9998876 579999999999998888776543321   112334666677788888888765443222      123444


Q ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEe--eCCC----------cceEEEEEcCCCCEEEEEECC------
Q 005913          549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL--MGHT----------SCVWTLAYSCEGSLLASGSAD------  610 (670)
Q Consensus       549 ~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~--~~h~----------~~V~sl~~s~~g~~l~sgs~D------  610 (670)
                      .+....+.+++..+.+.  .+.++++++..+......  ..+.          +....+++++++..++....+      
T Consensus       213 ~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         213 SSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             ceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence            55677888888766654  455667776554433211  1111          122357888988877665432      


Q ss_pred             ---CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCc--EEEEeeCCC
Q 005913          611 ---CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL--LFAAGALSK  668 (670)
Q Consensus       611 ---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~--~La~gs~dg  668 (670)
                         ..|.+||..++...               ..+. ....+.+++|+|||+  +++++..++
T Consensus       291 ~~~~~v~v~D~~t~~~~---------------~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~  337 (368)
T d1mdah_         291 AAAENTSSVTASVGQTS---------------GPIS-NGHDSDAIIAAQDGASDNYANSAGTE  337 (368)
T ss_dssp             SCEEEEEEEESSSCCEE---------------ECCE-EEEEECEEEECCSSSCEEEEEETTTT
T ss_pred             cCCceEEEEECCCCcEe---------------EEec-CCCceeEEEECCCCCEEEEEEeCCCC
Confidence               35889998887532               2222 234688999999986  345655554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.26  E-value=5.5e-11  Score=124.54  Aligned_cols=231  Identities=10%  Similarity=0.055  Sum_probs=159.0

Q ss_pred             cCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEE
Q 005913          349 NTHNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA  427 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  427 (670)
                      .|+..+.+..++|||++|++. ..++.|.+||+.+....                           ......+...+.++
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~---------------------------~ii~iP~g~gphgi  121 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTD---------------------------KITHIPNVQAIHGL  121 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE---------------------------EEEECTTCCCEEEE
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEe---------------------------eEEecCCCCCccce
Confidence            345556777788999999655 57888999998863211                           11123456788999


Q ss_pred             EEcCCCC--EEEEEeCCC-----------------eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC----
Q 005913          428 SFSPLGD--FILSSSADT-----------------TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----  484 (670)
Q Consensus       428 ~~sp~~~--~L~s~s~Dg-----------------~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----  484 (670)
                      +|+|+++  +++..+.+.                 .+..+|..+......+.... ....+.|+|+|.++++++.+    
T Consensus       122 ~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~  200 (441)
T d1qnia2         122 RLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERA  200 (441)
T ss_dssp             EECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCC
T ss_pred             EEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCce
Confidence            9999998  555555432                 23557888877766665433 46789999999998887643    


Q ss_pred             -------------------------------------CcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEE-EEcC
Q 005913          485 -------------------------------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSD  526 (670)
Q Consensus       485 -------------------------------------g~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~t-gs~d  526 (670)
                                                           +.+.+++......++.+.... ....+.++|+|+++++ +..+
T Consensus       201 ~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~  279 (441)
T d1qnia2         201 VDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLS  279 (441)
T ss_dssp             SSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTS
T ss_pred             EEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcC
Confidence                                                 344555555555666666543 3577999999998765 5678


Q ss_pred             CcEEEEECCCCc-----------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC----------CeeeEEe
Q 005913          527 KTVRLWDVSSGE-----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPL  585 (670)
Q Consensus       527 g~I~iwd~~~~~-----------~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~----------~~~~~~~  585 (670)
                      ++|.+||+.+..           ++.-.....-.....+|+++|..+.+...|..|..|++..          ...+..+
T Consensus       280 ~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~  359 (441)
T d1qnia2         280 PTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKL  359 (441)
T ss_dssp             SBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEE
T ss_pred             CcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecc
Confidence            999999986422           1111111112245568999999999999999999999741          1223333


Q ss_pred             -----eCCCcceEEEEEcCCCCEEEEEE
Q 005913          586 -----MGHTSCVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       586 -----~~h~~~V~sl~~s~~g~~l~sgs  608 (670)
                           .+|...+.+.+++|||++|++++
T Consensus       360 ~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         360 DVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             ECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             ccccCCCCCccccccccCCCCcEEEecC
Confidence                 46777777888999999999994

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=1.7e-09  Score=106.15  Aligned_cols=237  Identities=10%  Similarity=0.062  Sum_probs=158.2

Q ss_pred             CCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEc
Q 005913          352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS  430 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  430 (670)
                      -.-..++++++|++.++. ...+.|..++......                           ......+ .....+++++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~-~~~p~gvav~   65 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT---------------------------TVLPFNG-LYQPQGLAVD   65 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CE---------------------------EECCCCS-CCSCCCEEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE---------------------------EEeccCC-ccCceEEEEc
Confidence            346899999999976665 4557777776543111                           0011111 1234678899


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeE
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC  510 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~  510 (670)
                      ++++++++....+.+++++-.+...+....+ ....+++++.+++.++++-..+..+..++..................+
T Consensus        66 ~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  144 (260)
T d1rwia_          66 GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG  144 (260)
T ss_dssp             TTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCE
T ss_pred             CCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcce
Confidence            9999887777777777666554443333322 345689999999988877766777777777654433222233456688


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCc
Q 005913          511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS  590 (670)
Q Consensus       511 v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~  590 (670)
                      +++.++++.+++...++.|..+|...................+++.++|+++++....+.|..++.............-.
T Consensus       145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~  224 (260)
T d1rwia_         145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  224 (260)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCC
T ss_pred             eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCC
Confidence            99999999888888889999999876554433334456678999999999888888889999998655432221122234


Q ss_pred             ceEEEEEcCCCCEEEEEECCCcEEEEe
Q 005913          591 CVWTLAYSCEGSLLASGSADCTVKLWD  617 (670)
Q Consensus       591 ~V~sl~~s~~g~~l~sgs~Dg~I~iwd  617 (670)
                      ....|+++++|+++++-..+++|+.++
T Consensus       225 ~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         225 TPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            578999999999888777777666544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.13  E-value=1.8e-08  Score=101.02  Aligned_cols=227  Identities=9%  Similarity=0.046  Sum_probs=156.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       352 ~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      ..+..++++|||+++++...++.|..|+...                              ....+....+.+.+++|++
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g------------------------------~~~~~~~~~~~~~gla~~~   77 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG------------------------------NQQIHATVEGKVSGLAFTS   77 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC------------------------------CEEEEEECSSEEEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC------------------------------CEEEEEcCCCCcceEEEcC
Confidence            3588999999999999999999887777442                              1223444567899999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcee-EE--eeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec------
Q 005913          432 LGDFILSSSADTTIRLWSTKLNANL-VC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA------  502 (670)
Q Consensus       432 ~~~~L~s~s~Dg~I~lwd~~~~~~~-~~--~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~------  502 (670)
                      +|+++++...++.+..|+....... ..  ..........+.+.++|.++++.+.++.+..++...+.......      
T Consensus        78 dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  157 (302)
T d2p4oa1          78 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR  157 (302)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             CCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccce
Confidence            9999998888888888876543321 11  12244567899999999999988888999888887664332221      


Q ss_pred             ----ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEE---EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q 005913          503 ----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV---RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD  575 (670)
Q Consensus       503 ----~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwD  575 (670)
                          ........+.+.. +..+++.+..+.|+.++.......   ..+. .......+++.++|+++++...++.|..++
T Consensus       158 ~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         158 SNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             SSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             eeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence                1122345666653 344555667788988887654322   2222 234467899999999888888899999998


Q ss_pred             CCCCe-eeEEeeCCCcceEEEEE---cCCCCEEEEEECC
Q 005913          576 LASGR-CVTPLMGHTSCVWTLAY---SCEGSLLASGSAD  610 (670)
Q Consensus       576 l~~~~-~~~~~~~h~~~V~sl~~---s~~g~~l~sgs~D  610 (670)
                      ..... .+......-...++++|   ++|++.|+.++..
T Consensus       236 p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         236 PDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            75432 22333334456789999   6688877766554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=5.1e-08  Score=95.05  Aligned_cols=222  Identities=18%  Similarity=0.188  Sum_probs=141.9

Q ss_pred             eeeecCccCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC-CcEEE-
Q 005913          415 TLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-RTARI-  489 (670)
Q Consensus       415 ~~~~~h~~~V~~l~~sp~~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-g~v~l-  489 (670)
                      +.+..+...+.+.+|||||+.||..+...   .+.+.+...+.. .....+........|+|+|..++..... +...+ 
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence            33445567788999999999998665433   466667665544 3444567778899999999998876643 22222 


Q ss_pred             -EECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCC--cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          490 -WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       490 -wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                       +...... ...............+++++..++..+ .+|  .|.+.++..+.... ...+........|+|+|+.++..
T Consensus       111 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~  188 (269)
T d2hqsa1         111 VMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMV  188 (269)
T ss_dssp             EEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEE
T ss_pred             eccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEEE
Confidence             3333322 222333444455566777777665544 444  46666666654433 34456677888999999988876


Q ss_pred             ECCC---eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCccccccccccCCcccccc
Q 005913          566 DEDG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---DCTVKLWDVTTSTKVLKTEEKSGTNRLRSL  639 (670)
Q Consensus       566 ~~dg---~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  639 (670)
                      +.++   .|.+.|...+..  ....+........|||||+.|+-.+.   ...|.+|++..+..                
T Consensus       189 ~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~----------------  250 (269)
T d2hqsa1         189 SSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK----------------  250 (269)
T ss_dssp             EECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE----------------
T ss_pred             eecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE----------------
Confidence            6543   455555554443  34445666788899999998875553   34688899876532                


Q ss_pred             cccCCCCCCeEEEEEecC
Q 005913          640 KTLPTKSTPVYSLQFSRR  657 (670)
Q Consensus       640 ~~~~~~~~~V~~l~fs~~  657 (670)
                      ..+......+...+|||.
T Consensus       251 ~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         251 ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EECCCSSSEEEEEEECCC
T ss_pred             EEEeCCCCcEEeEEeCCC
Confidence            233344556788899984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.12  E-value=1.2e-08  Score=102.27  Aligned_cols=229  Identities=11%  Similarity=0.015  Sum_probs=159.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEe
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIM  501 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~-~~~~  501 (670)
                      .+..++++|||+++++...+++|+.|+....  ...+......+.+++|+++|..+++...++.+..|+...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            5789999999999999999999998886643  333444566789999999999999988888888887654322 1121


Q ss_pred             --cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec----------CCCCeEEEEEcCCCCEEEEEECCC
Q 005913          502 --AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----------HRSMILSLAMSPDGRYMASGDEDG  569 (670)
Q Consensus       502 --~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~----------h~~~I~~l~~sp~g~~l~sg~~dg  569 (670)
                        .........+++.++++++++.+.++.+..+|...+........          .......+.++. +..+++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence              13445688999999999999888899999999887754433221          112345566653 34555667888


Q ss_pred             eEEEEeCCCCeeeEEe--eCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCC
Q 005913          570 TIMMWDLASGRCVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST  647 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~--~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  647 (670)
                      .|..++..........  .........++++++|+++++...++.|..++......              .+......-.
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~--------------~~~~~~~~~~  251 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT--------------IIAQAEQGVI  251 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEE--------------EEECGGGTCT
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEE--------------EEEecCCCCC
Confidence            9999988754332211  11223456799999999988888899999987654321              1222333344


Q ss_pred             CeEEEEE---ecCCcEEEEeeCCC
Q 005913          648 PVYSLQF---SRRNLLFAAGALSK  668 (670)
Q Consensus       648 ~V~~l~f---s~~~~~La~gs~dg  668 (670)
                      ..++++|   ++|++.|.+++..|
T Consensus       252 ~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         252 GSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             TEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CceEEEEcCCCCCCCEEEEECCCC
Confidence            5789999   66777776665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.10  E-value=6.3e-08  Score=97.50  Aligned_cols=248  Identities=9%  Similarity=0.088  Sum_probs=160.3

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          349 NTHNGLNCASISQDGSLVAGGFS-------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       349 ~~~~~V~~l~fs~d~~~La~g~~-------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      ..-...-.++|.++|++.++...       +|.|..|+..+........                        .......
T Consensus        15 ~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~------------------------~~~~~~~   70 (314)
T d1pjxa_          15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK------------------------PEVNGYG   70 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC------------------------CEETTEE
T ss_pred             cCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEEC------------------------CccccCC
Confidence            33445778899999998876533       3567777765421100000                        0000112


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCC----ccEeEEEEecCCCEEEEEEC--------------
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSH--------------  483 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~l~~sp~g~~l~s~s~--------------  483 (670)
                      +.-..++|.++++.++++...+.|..++..............    ...+++.+.++|...++-..              
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             CcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence            345789999999988888877788888987543322211111    12578999999988777432              


Q ss_pred             -CCcEEEEECCCCceeEEecccCCCeeEEEEcCCCC-----EEEEEEcCCcEEEEECCCCcEEE---EEe---c-CCCCe
Q 005913          484 -DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-----YIATGSSDKTVRLWDVSSGECVR---IFI---G-HRSMI  550 (670)
Q Consensus       484 -dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-----~l~tgs~dg~I~iwd~~~~~~~~---~~~---~-h~~~I  550 (670)
                       .|.|..++.+ ++.. .+.......+.++|+|++.     ++++-+..+.|+.||+.....+.   .+.   + +....
T Consensus       151 ~~G~v~~~~~d-g~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T d1pjxa_         151 KFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             SCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             CCceEEEEeec-Ccee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence             2344444443 2332 2333444567899998764     44455677889999876443322   121   1 12335


Q ss_pred             EEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCC-EEEEEECCCcEEEEeCCCCc
Q 005913          551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       551 ~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~-~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      ..+++.++|++.++....+.|.+||...+..+..+..+...+++++|.|+++ ++++.+.+|.|...++....
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            6899999999888888899999999988887777776667789999999987 55666677888888876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=7.6e-08  Score=93.74  Aligned_cols=219  Identities=12%  Similarity=0.059  Sum_probs=141.1

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFS-DSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~-dg~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      +......+...+|||||+.||.... .+.  +.+.+...                             .....+..+.+.
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~   84 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-----------------------------GAVRQVASFPRH   84 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-----------------------------CCEEEEECCSSC
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc-----------------------------CceeEEeeeecc
Confidence            3455677899999999999996543 333  33333322                             233455567788


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCeEEE--EeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE-CCC--cEEEEECCCCce
Q 005913          424 VYSASFSPLGDFILSSSA-DTTIRL--WSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDR--TARIWSMDRIQP  497 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~-Dg~I~l--wd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~dg--~v~lwd~~~~~~  497 (670)
                      .....|+|+|..++..+. ++...+  +...... ...............+++++..++..+ .++  .+.+.++.... 
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-  162 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-  162 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-
T ss_pred             cccceecCCCCeeeEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeeccccc-
Confidence            899999999998886553 333333  3332222 222233344455566777776655544 444  45555666553 


Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEcCC---cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeE
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTI  571 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~---dg~I  571 (670)
                      ......+........|+|+++.++..+.++   .|.+.|...+..  ....+........|||||+.|+..+.   ...|
T Consensus       163 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         163 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL  240 (269)
T ss_dssp             CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence            334445566777889999999998876654   455556555544  33345566788899999999876543   3578


Q ss_pred             EEEeCCCCeeeEEeeCCCcceEEEEEcC
Q 005913          572 MMWDLASGRCVTPLMGHTSCVWTLAYSC  599 (670)
Q Consensus       572 ~iwDl~~~~~~~~~~~h~~~V~sl~~s~  599 (670)
                      +++++..+.. ..+....+.+...+|||
T Consensus       241 ~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         241 NLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             EEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            9999976654 45666677888899998

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=9.8e-09  Score=100.56  Aligned_cols=228  Identities=10%  Similarity=0.065  Sum_probs=151.3

Q ss_pred             cCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 005913          422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI  500 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~  500 (670)
                      ..-.+++++++|+..++. +..+.|..++............-......++++++|..+++....+.+++++-.+...+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            445799999999966654 4557777777664433332222223457899999999887776666666665554433322


Q ss_pred             ecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       501 ~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      . .......++++.++++++++-..+..+..++...................++++|+|+.+++...++.|..+|.....
T Consensus        94 ~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          94 F-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             C-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             e-eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            2 233567899999999988887777778888765544322222223456789999999988888888999999987654


Q ss_pred             eeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcE
Q 005913          581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLL  660 (670)
Q Consensus       581 ~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~  660 (670)
                      ........-.....++++++|+++++....+.|..++.......              +.. ...-.....++++++|.+
T Consensus       173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~--------------~~~-~~~~~~P~~i~~d~~g~l  237 (260)
T d1rwia_         173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST--------------VLP-FTGLNTPLAVAVDSDRTV  237 (260)
T ss_dssp             EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE--------------ECC-CCSCCCEEEEEECTTCCE
T ss_pred             eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE--------------EEc-cCCCCCeEEEEEeCCCCE
Confidence            44332344456789999999999888888888888876543211              000 112235679999999987


Q ss_pred             EEEee
Q 005913          661 FAAGA  665 (670)
Q Consensus       661 La~gs  665 (670)
                      +++-.
T Consensus       238 ~vad~  242 (260)
T d1rwia_         238 YVADR  242 (260)
T ss_dssp             EEEEG
T ss_pred             EEEEC
Confidence            77643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.09  E-value=3.3e-08  Score=101.91  Aligned_cols=265  Identities=11%  Similarity=0.071  Sum_probs=148.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEE
Q 005913          350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF  429 (670)
Q Consensus       350 ~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  429 (670)
                      ....+.-++|++++++|.+.. .+.+..|.+..............  ...+......+++....+.....+.+.|....+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~--~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecC--CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            444567799999999998875 46688887764322111100000  000111111111111112222234455555555


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCcEEEEECCCCceeE---Ee--cc
Q 005913          430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLR---IM--AG  503 (670)
Q Consensus       430 sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~v~lwd~~~~~~~~---~~--~~  503 (670)
                      .+++......+.+...++...    ....-......+.++.|+|+|+++++++. ...|.+|+......+.   ..  ..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKN----VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEE----EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             cCCCCcceeEeeeecceecCc----ccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC
Confidence            555443332222222111110    01111122334789999999999888864 3578888765432221   11  12


Q ss_pred             cCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEEEe-------------------cCCCCeEEEEEcCCCCEEE
Q 005913          504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFI-------------------GHRSMILSLAMSPDGRYMA  563 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~-------------------~h~~~I~~l~~sp~g~~l~  563 (670)
                      .......++|+|+++++++.. .+++|.+|++..++......                   .+......+.++|+|++|+
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            346788999999999887655 57899999987654322111                   1112356789999999998


Q ss_pred             EEEC------CCeEEEEeCCCCeeeEE------eeCCCcceEEEEEcC-CCCEEEEEE-CCCcEEEEeCCCC
Q 005913          564 SGDE------DGTIMMWDLASGRCVTP------LMGHTSCVWTLAYSC-EGSLLASGS-ADCTVKLWDVTTS  621 (670)
Q Consensus       564 sg~~------dg~I~iwDl~~~~~~~~------~~~h~~~V~sl~~s~-~g~~l~sgs-~Dg~I~iwd~~~~  621 (670)
                      ++..      .+.|..|++.....+..      ..........++++| +|++|+++. .++.|.||++...
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            8642      23477787764322221      112234567799998 789776664 6789999998654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.07  E-value=1.3e-07  Score=93.38  Aligned_cols=241  Identities=10%  Similarity=0.168  Sum_probs=164.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      -..++++++|+++++-..+..|++|+.+..........  .                     .-.+....-..+++.++.
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~--~---------------------~~~~~~~~p~~~~~~~~~   81 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC--G---------------------KRDSQLLYPNRVAVVRNS   81 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCB--S---------------------SSTTCBSSEEEEEEETTT
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEeccc--C---------------------CCcccccccccccccccc
Confidence            67899999999888888889999999663111000000  0                     000111233445555443


Q ss_pred             C-EEEE-EeCCCeEEEEeCCCCceeEEee-CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe--cccCCCe
Q 005913          434 D-FILS-SSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM--AGHLSDV  508 (670)
Q Consensus       434 ~-~L~s-~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~--~~~~~~v  508 (670)
                      . .+++ .+.++.|..++.. +.....+. ........+++.++|.++++....+.+.+++.+ ++.+..+  ..+....
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~  159 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP  159 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred             cccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccccccc
Confidence            3 3433 3345677777765 44444443 234567789999999988887777888888865 4455554  3456678


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCeeeEEe
Q 005913          509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPL  585 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~~~~  585 (670)
                      ..+++.++++.+++....+.|++||. +++.+..+-  +.......|++.++|+.+++-. .++.|.+|+ .+|+.+..+
T Consensus       160 ~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~  237 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISAL  237 (279)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEE
T ss_pred             ceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEE
Confidence            88999999999888888999999996 566776663  2344578999999999777654 345799999 568877666


Q ss_pred             eCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          586 MGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       586 ~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      ...  ....+.+++.++|.+++ ++.+++|++|......
T Consensus       238 ~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             eCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            432  34578999999997655 5578999999987643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.02  E-value=4.1e-08  Score=101.14  Aligned_cols=238  Identities=9%  Similarity=0.020  Sum_probs=141.2

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEE---CCCcEEEEECCC
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSS---HDRTARIWSMDR  494 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s---~dg~v~lwd~~~  494 (670)
                      ....+..|+|+|+++.|.+++. +.+..|.+.....+....  ........+.++++++.++...   ..+++..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455667999999999988765 467788776433332221  1222345677888887533322   235555544321


Q ss_pred             C-------------ce---eEE-ecccCCCeeEEEEcCCCCEEEEEEc-CCcEEEEECCC-CcEE--EEEe--cCCCCeE
Q 005913          495 I-------------QP---LRI-MAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS-GECV--RIFI--GHRSMIL  551 (670)
Q Consensus       495 ~-------------~~---~~~-~~~~~~~v~~v~~~p~~~~l~tgs~-dg~I~iwd~~~-~~~~--~~~~--~h~~~I~  551 (670)
                      .             ..   ... -......+.++.|+|+|+++++++. ...|++|+... +...  ....  .......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            1             10   000 1112334789999999999988764 34788887653 3322  1111  2345688


Q ss_pred             EEEEcCCCCEEEEEE-CCCeEEEEeCCCCeee--EE---ee--------------CCCcceEEEEEcCCCCEEEEEEC-C
Q 005913          552 SLAMSPDGRYMASGD-EDGTIMMWDLASGRCV--TP---LM--------------GHTSCVWTLAYSCEGSLLASGSA-D  610 (670)
Q Consensus       552 ~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~~~--~~---~~--------------~h~~~V~sl~~s~~g~~l~sgs~-D  610 (670)
                      .++|+|+|+++++.. .++.|.+||+..+...  ..   ..              .+......+.++|+|++|+++.. +
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            999999999886655 6789999998765422  11   11              11123567899999999887742 2


Q ss_pred             -----CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEec-CCcEEEEeeCC
Q 005913          611 -----CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSR-RNLLFAAGALS  667 (670)
Q Consensus       611 -----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~-~~~~La~gs~d  667 (670)
                           +.|..|++.........         ..+....+......+++|+| +|++|+++..+
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~---------~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQ---------LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEE---------EEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             CCccceEEEEEEecCCCceeeE---------eEeeEEEcCCCCccEEEecCCCCCEEEEEeCC
Confidence                 23777777654322111         11222223333457789998 78877766544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.97  E-value=1e-06  Score=88.53  Aligned_cols=233  Identities=9%  Similarity=0.061  Sum_probs=154.0

Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       347 ~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      .....-.+..++|.++|++.++-...+.|..|+....                            ...............
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~----------------------------~~~~~~~~~~~~p~g   86 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK----------------------------EIKRPFVSHKANPAA   86 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC----------------------------CEEEEEECSSSSEEE
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCC----------------------------eEEEEEeCCCCCeeE
Confidence            3334445679999999998888878888888876531                            122223344556789


Q ss_pred             EEEcCCCCEEEEEeC----CCeEEEEeCCCCceeEEeeC--CCccEeEEEEecCCCEEEEEEC------CCcEEEEECCC
Q 005913          427 ASFSPLGDFILSSSA----DTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDR  494 (670)
Q Consensus       427 l~~sp~~~~L~s~s~----Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~------dg~v~lwd~~~  494 (670)
                      ++++++|+++++...    .+.|...+..+.........  -.....++.+.++|.+.++...      .+.+..++.+.
T Consensus        87 la~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg  166 (319)
T d2dg1a1          87 IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  166 (319)
T ss_dssp             EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             EEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc
Confidence            999999998776543    23455555554444333322  1334778999999987666432      12355555544


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCC-cEEEE-------EecCCCCeEEEEEcCCCCEEEEE
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSG-ECVRI-------FIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~-~~~~~-------~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      . .+..+.......+.++|+|+++.|+.+ +..+.|+.||+... .....       ..........+++.++|++.++.
T Consensus       167 ~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         167 R-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             C-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             c-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            3 333333344567889999999876554 56789999998632 21111       11112235689999999988888


Q ss_pred             ECCCeEEEEeCCCCeeeEEee------CCCcceEEEEEcCCCCEEEEEEC
Q 005913          566 DEDGTIMMWDLASGRCVTPLM------GHTSCVWTLAYSCEGSLLASGSA  609 (670)
Q Consensus       566 ~~dg~I~iwDl~~~~~~~~~~------~h~~~V~sl~~s~~g~~l~sgs~  609 (670)
                      ...+.|.+|| ..|+.+.++.      ++...+++++|.+++..+++.+.
T Consensus       246 ~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         246 YGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            8999999999 4788887775      23446789999998877766654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.93  E-value=3.6e-07  Score=91.82  Aligned_cols=230  Identities=10%  Similarity=0.087  Sum_probs=147.8

Q ss_pred             cCEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCceeEEeeCC----CccEeEEEEecCCCEEEEEECCCcEEEE
Q 005913          422 GPVYSASFSPLGDFILSSSA-------DTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSHDRTARIW  490 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~-------Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s~dg~v~lw  490 (670)
                      ...-+++|.++|++.++...       +|+|..||..++.........    ...-..+.|.+++..++++...+.+..+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34567789999997776433       467999998877654433221    1235679999999988888877788889


Q ss_pred             ECCCCceeEEeccc----CCCeeEEEEcCCCCEEEEEEc---------------CCcEEEEECCCCcEEEEEecCCCCeE
Q 005913          491 SMDRIQPLRIMAGH----LSDVDCVRWHINCNYIATGSS---------------DKTVRLWDVSSGECVRIFIGHRSMIL  551 (670)
Q Consensus       491 d~~~~~~~~~~~~~----~~~v~~v~~~p~~~~l~tgs~---------------dg~I~iwd~~~~~~~~~~~~h~~~I~  551 (670)
                      +.+...........    ....+.+++.++|++.++-..               .|.|+.++. .++..... ..-....
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~-~~~~~pN  175 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD-TAFQFPN  175 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE-EEESSEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee-CCcceee
Confidence            88765322211111    123578999999998877432               234555543 34433332 2333456


Q ss_pred             EEEEcCCCC-----EEEEEECCCeEEEEeCCCCeeeE------EeeC-CCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          552 SLAMSPDGR-----YMASGDEDGTIMMWDLASGRCVT------PLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       552 ~l~~sp~g~-----~l~sg~~dg~I~iwDl~~~~~~~------~~~~-h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                      .++|+|++.     ++++-+..+.|..||+.....+.      .+.+ +....-.+++..+|+++++....+.|.+||-.
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            899999764     44455678899999876432222      2222 22345689999999998888889999999876


Q ss_pred             CCccccccccccCCcccccccccCCCCCCeEEEEEecCCc-EEEEeeCCC
Q 005913          620 TSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNL-LFAAGALSK  668 (670)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~La~gs~dg  668 (670)
                      .+..               +..+........+++|.|+++ ++++.+..|
T Consensus       256 ~g~~---------------~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g  290 (314)
T d1pjxa_         256 GGQP---------------KMRIRCPFEKPSNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             CBSC---------------SEEEECSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCEE---------------EEEEECCCCCEEEEEEeCCCCEEEEEECCCC
Confidence            5432               222233345678999999986 445544443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.9e-07  Score=99.34  Aligned_cols=277  Identities=14%  Similarity=0.129  Sum_probs=159.5

Q ss_pred             CEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccC
Q 005913          353 GLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP  423 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~---------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  423 (670)
                      .+....||||+++++.+..         .+.+.|+|+.+.....                          +.......+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~--------------------------l~~~~~~~~~  115 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--------------------------LDPPEVSNAK  115 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--------------------------CCCTTCCSCC
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee--------------------------ccCccCCccc
Confidence            4566789999999887743         4667888877532211                          1111112234


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-CCCccE-----------------eEEEEecCCCEEEEEECC-
Q 005913          424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPV-----------------WDVQFNPQGHYFASSSHD-  484 (670)
Q Consensus       424 V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V-----------------~~l~~sp~g~~l~s~s~d-  484 (670)
                      +....|||||+.||-.. ++.|.+.+..++..++... +....|                 ..+.|||||++||....| 
T Consensus       116 l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~  194 (465)
T d1xfda1         116 LQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND  194 (465)
T ss_dssp             CSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             cceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecc
Confidence            55578999999998776 5689999887766544332 211111                 367799999999987532 


Q ss_pred             Cc---------------------------------EEEEECCCCceeEEec------ccCCCeeEEEEcCCCCEEEEEEc
Q 005913          485 RT---------------------------------ARIWSMDRIQPLRIMA------GHLSDVDCVRWHINCNYIATGSS  525 (670)
Q Consensus       485 g~---------------------------------v~lwd~~~~~~~~~~~------~~~~~v~~v~~~p~~~~l~tgs~  525 (670)
                      ..                                 +.++|++++.......      ....-+..+.|.|+++.++....
T Consensus       195 s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n  274 (465)
T d1xfda1         195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN  274 (465)
T ss_dssp             TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             cccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEc
Confidence            22                                 3444444332221111      11123567899999986666433


Q ss_pred             -C---CcEEEEECCCCcEEEEEecCC-CC----eEEEEEcCCCCEEE---EEECCC--eEEEEeCC------CCeeeEEe
Q 005913          526 -D---KTVRLWDVSSGECVRIFIGHR-SM----ILSLAMSPDGRYMA---SGDEDG--TIMMWDLA------SGRCVTPL  585 (670)
Q Consensus       526 -d---g~I~iwd~~~~~~~~~~~~h~-~~----I~~l~~sp~g~~l~---sg~~dg--~I~iwDl~------~~~~~~~~  585 (670)
                       +   ..|.++|..+|++...+..+. +.    -....|+|+|+.++   ....+|  .+...++.      .+..+..+
T Consensus       275 R~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~L  354 (465)
T d1xfda1         275 RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI  354 (465)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred             cccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEe
Confidence             2   268889999998876665332 22    23467999998433   222232  34444321      23334444


Q ss_pred             eCCCcceEEE-EEcCCCCEEE-EEECC--CcEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEE
Q 005913          586 MGHTSCVWTL-AYSCEGSLLA-SGSAD--CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLF  661 (670)
Q Consensus       586 ~~h~~~V~sl-~~s~~g~~l~-sgs~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~L  661 (670)
                      ....-.|..+ .|+.+++.|. ++..+  +.-.+|.+.....          ....++....+......++.|||++.++
T Consensus       355 T~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~----------~~~~~lt~~~~~~~~~~~~~~S~~~~y~  424 (465)
T d1xfda1         355 TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN----------FNRQCLSCDLVENCTYFSASFSHSMDFF  424 (465)
T ss_dssp             CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT----------CCCBCSSTTSSSSCCCCEEEECTTSSEE
T ss_pred             ccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCC----------CcceeeccccCCCCCEEEEEECCCCCEE
Confidence            4444456664 6888776554 45433  2344665543211          1112233223445568899999999998


Q ss_pred             EEeeC
Q 005913          662 AAGAL  666 (670)
Q Consensus       662 a~gs~  666 (670)
                      +....
T Consensus       425 v~~~s  429 (465)
T d1xfda1         425 LLKCE  429 (465)
T ss_dssp             EEECC
T ss_pred             EEEee
Confidence            85544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.90  E-value=1.6e-06  Score=87.15  Aligned_cols=236  Identities=10%  Similarity=0.006  Sum_probs=152.6

Q ss_pred             CccCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC----CcEEEEECCCC
Q 005913          420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRI  495 (670)
Q Consensus       420 h~~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----g~v~lwd~~~~  495 (670)
                      ....+-+++|.++|++.++-...+.|+.|+..+................++++++|..+++...+    +.+...+....
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            34456789999999977777788999999988776666555555667899999999877765432    34555555555


Q ss_pred             ceeEEecc--cCCCeeEEEEcCCCCEEEEEEc------CCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-E
Q 005913          496 QPLRIMAG--HLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-D  566 (670)
Q Consensus       496 ~~~~~~~~--~~~~v~~v~~~p~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~  566 (670)
                      ........  .....+.+++.++|++.++...      .+.+..++...+. +..+...-.....++|+|+++.|+.+ +
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecc
Confidence            44443332  1234678999999997666432      1345556554333 33333333456789999999876554 5


Q ss_pred             CCCeEEEEeCCCC-eeeEE-------eeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCccccc
Q 005913          567 EDGTIMMWDLASG-RCVTP-------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS  638 (670)
Q Consensus       567 ~dg~I~iwDl~~~-~~~~~-------~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  638 (670)
                      ..+.|..||+... .....       ..........+++..+|++.++....+.|.+|+- .++.+....         .
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~---------~  266 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL---------I  266 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE---------C
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe---------C
Confidence            6789999998632 11111       1111233568999999999999999999999995 443322111         0


Q ss_pred             ccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          639 LKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       639 ~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                      -..-.++...+++++|.+.+..+.+.+.
T Consensus       267 P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         267 PGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            0111234456789999988766655443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=2.2e-06  Score=84.16  Aligned_cols=222  Identities=11%  Similarity=0.163  Sum_probs=154.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeC------CCccEeEEEEecCC-CEEEEE-ECCCcEEEEECCC
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG------HNYPVWDVQFNPQG-HYFASS-SHDRTARIWSMDR  494 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~------h~~~V~~l~~sp~g-~~l~s~-s~dg~v~lwd~~~  494 (670)
                      ....++++++++.+++-..++.|++||.+ +..+..+..      .......+++.++. .++++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            46889999999988887788899999976 555555532      11234456666543 344433 344577777764 


Q ss_pred             CceeEEec-ccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeE
Q 005913          495 IQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTI  571 (670)
Q Consensus       495 ~~~~~~~~-~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~sg~~dg~I  571 (670)
                      +.....+. ........+++.++++++++....+.+.+++. +++.+..+.  .+......+++.++|+.+++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccce
Confidence            44555553 34566789999999998888887888888885 566666653  344568889999999999888889999


Q ss_pred             EEEeCCCCeeeEEee--CCCcceEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCccccccccccCCccccccccc--CCCC
Q 005913          572 MMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL--PTKS  646 (670)
Q Consensus       572 ~iwDl~~~~~~~~~~--~h~~~V~sl~~s~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  646 (670)
                      ++||. +++.+..+.  +.......++++++|+++++-+. ++.|.+|+-.. +.               +.++  ....
T Consensus       181 ~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G-~~---------------~~~~~~~~~~  243 (279)
T d1q7fa_         181 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QL---------------ISALESKVKH  243 (279)
T ss_dssp             EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CE---------------EEEEEESSCC
T ss_pred             eeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC-CE---------------EEEEeCCCCC
Confidence            99996 566666663  34456789999999998877654 45799998432 21               1111  1222


Q ss_pred             CCeEEEEEecCCcEEEEe
Q 005913          647 TPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       647 ~~V~~l~fs~~~~~La~g  664 (670)
                      .....|++.++|.++++.
T Consensus       244 ~~p~~vav~~dG~l~V~~  261 (279)
T d1q7fa_         244 AQCFDVALMDDGSVVLAS  261 (279)
T ss_dssp             SCEEEEEEETTTEEEEEE
T ss_pred             CCEeEEEEeCCCcEEEEe
Confidence            346889999999876654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.9e-07  Score=95.37  Aligned_cols=220  Identities=10%  Similarity=0.062  Sum_probs=135.8

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEEE
Q 005913          358 SISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL  437 (670)
Q Consensus       358 ~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L~  437 (670)
                      .|.+++.++.. ..+|.|.+|++.+........                         ......-.+....||||+++++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~-------------------------~~~~~~~~~~~~~~SpD~~~vl   76 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIE-------------------------GKKIESLRAIRYEISPDREYAL   76 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC-------------------------TTTTTTTTCSEEEECTTSSEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEc-------------------------CccccccccceeEECCCCCeEE
Confidence            47777776543 467889999887532211100                         0000123455678999999988


Q ss_pred             EEe---------CCCeEEEEeCCCCceeEEee--CCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccC-
Q 005913          438 SSS---------ADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-  505 (670)
Q Consensus       438 s~s---------~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~-  505 (670)
                      ...         ..+.+.++|+.++.......  .....+....|||+|+.+|-.. ++.|.+.+...+..++...... 
T Consensus        77 ~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~  155 (465)
T d1xfda1          77 FSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKE  155 (465)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBT
T ss_pred             EEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCc
Confidence            764         35788999999876544322  2334566688999999998875 5788888887776665543211 


Q ss_pred             CC-----------------eeEEEEcCCCCEEEEEEcC-Cc---------------------------------EEEEEC
Q 005913          506 SD-----------------VDCVRWHINCNYIATGSSD-KT---------------------------------VRLWDV  534 (670)
Q Consensus       506 ~~-----------------v~~v~~~p~~~~l~tgs~d-g~---------------------------------I~iwd~  534 (670)
                      ..                 -..+.|+|||++||....| ..                                 +.++|+
T Consensus       156 ~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~  235 (465)
T d1xfda1         156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (465)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             ceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec
Confidence            11                 2467899999999986532 22                                 344444


Q ss_pred             CCCcEEEEEe------cCCCCeEEEEEcCCCCEEEEEECC----CeEEEEeCCCCeeeEEeeCC-Ccce----EEEEEcC
Q 005913          535 SSGECVRIFI------GHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGRCVTPLMGH-TSCV----WTLAYSC  599 (670)
Q Consensus       535 ~~~~~~~~~~------~h~~~I~~l~~sp~g~~l~sg~~d----g~I~iwDl~~~~~~~~~~~h-~~~V----~sl~~s~  599 (670)
                      .++.......      .....+..+.|+|++++++.....    ..|.++|..+|++...+..+ .+.|    ....|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~  315 (465)
T d1xfda1         236 NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK  315 (465)
T ss_dssp             SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT
T ss_pred             CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc
Confidence            4332211111      112236788999999877664432    36889999999766554322 2222    3457899


Q ss_pred             CCCEE
Q 005913          600 EGSLL  604 (670)
Q Consensus       600 ~g~~l  604 (670)
                      +|+.+
T Consensus       316 dg~~~  320 (465)
T d1xfda1         316 DGRKF  320 (465)
T ss_dssp             TSCSE
T ss_pred             CCCee
Confidence            98743

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.55  E-value=4.6e-05  Score=75.10  Aligned_cols=219  Identities=10%  Similarity=0.020  Sum_probs=147.9

Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          355 NCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       355 ~~l~fs~d-~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      -+..|++. +.+..+--..+.|.-|+..+.                             ....+ .....+.++++.+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g-----------------------------~~~~~-~~~~~~~~i~~~~dg   70 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASG-----------------------------RKTVH-ALPFMGSALAKISDS   70 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTT-----------------------------EEEEE-ECSSCEEEEEEEETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCC-----------------------------eEEEE-ECCCCcEEEEEecCC
Confidence            45668764 555556556788888887641                             11111 234567889999888


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeC----CCccEeEEEEecCCCEEEEEEC----CCcEEEEECCCCceeEEecccC
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH----DRTARIWSMDRIQPLRIMAGHL  505 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~----dg~v~lwd~~~~~~~~~~~~~~  505 (670)
                      .++++ +.+ .|.++|..+++.......    ....+.++.+.|+|.+.++...    .+.-.+|.+..++...... ..
T Consensus        71 ~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~  147 (295)
T d2ghsa1          71 KQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DI  147 (295)
T ss_dssp             EEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EE
T ss_pred             CEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-cc
Confidence            76665 455 489999998865443321    2235789999999987666542    2345667666665544443 34


Q ss_pred             CCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCC------cEE--EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q 005913          506 SDVDCVRWHINCNYIATG-SSDKTVRLWDVSSG------ECV--RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL  576 (670)
Q Consensus       506 ~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~------~~~--~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl  576 (670)
                      ...+.++|+++++.++.+ +..+.|+.+++...      +..  ..+.+..+....+++..+|++.++.-..|.|..|| 
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-  226 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-  226 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-
Confidence            567889999999876554 45778998887421      111  12223445678999999999888887889999999 


Q ss_pred             CCCeeeEEeeCCCcceEEEEEc-CCCCEEEEE
Q 005913          577 ASGRCVTPLMGHTSCVWTLAYS-CEGSLLASG  607 (670)
Q Consensus       577 ~~~~~~~~~~~h~~~V~sl~~s-~~g~~l~sg  607 (670)
                      ..|+.+..+.-....+++++|- ++.+.|+..
T Consensus       227 p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         227 TDGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             TTCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             CCCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            5788888887766779999995 566555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=0.00021  Score=70.12  Aligned_cols=220  Identities=11%  Similarity=0.054  Sum_probs=144.0

Q ss_pred             EEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc-
Q 005913          426 SASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-  503 (670)
Q Consensus       426 ~l~~sp~~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~-  503 (670)
                      +..|.+....| .+--..+.|.-||..++... .+. ....+.++.+.++|.++++ +.+ .+.++|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            45688755544 44446788999999877543 333 3446788999999876654 454 589999998875544331 


Q ss_pred             ---cCCCeeEEEEcCCCCEEEEEEcC----CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEe
Q 005913          504 ---HLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWD  575 (670)
Q Consensus       504 ---~~~~v~~v~~~p~~~~l~tgs~d----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwD  575 (670)
                         ....++.+.+.|+|++.++....    +.-.+|.+..++....+.. -.....++|+++++.++.+ +..+.|..|+
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEee
Confidence               12347888999999977765432    3456676667766555543 3456789999999866554 5678899998


Q ss_pred             CCCC------ee--eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccccccccCCCCC
Q 005913          576 LASG------RC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST  647 (670)
Q Consensus       576 l~~~------~~--~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  647 (670)
                      +...      +.  ...+.+..+....+++..+|++.++.-..+.|..||-. ++.               +..+.....
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~---------------~~~i~lP~~  240 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH---------------IARYEVPGK  240 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE---------------EEEEECSCS
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcE---------------eeEecCCCC
Confidence            7421      11  12223344567889999999988888788899999954 332               222222223


Q ss_pred             CeEEEEEe-cCC-cEEEEeeC
Q 005913          648 PVYSLQFS-RRN-LLFAAGAL  666 (670)
Q Consensus       648 ~V~~l~fs-~~~-~~La~gs~  666 (670)
                      .+++++|- +++ .++++.+.
T Consensus       241 ~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         241 QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             BEEEEEEESTTSCEEEEEEBC
T ss_pred             ceEEEEEeCCCCCEEEEEECC
Confidence            58999996 554 34454443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.42  E-value=7.8e-06  Score=79.13  Aligned_cols=228  Identities=14%  Similarity=0.087  Sum_probs=128.8

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCE
Q 005913          358 SISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF  435 (670)
Q Consensus       358 ~fs~d--~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  435 (670)
                      ..|||  |+.+|-. .+|.|.+.++.+.                             ..+.+..+.+.+...+|||||+.
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g-----------------------------~~~~Lt~~~~~~~~p~~SPDG~~   54 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSG-----------------------------STRKIVSNLGVINNARFFPDGRK   54 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTC-----------------------------CEEEEECSSSEEEEEEECTTSSE
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCC-----------------------------CEEEEecCCCcccCEEECCCCCE
Confidence            35788  9988865 4556777777641                             23445667778899999999999


Q ss_pred             EEEEeC-C-----CeEEEEeCCCCceeEEee------CCCccEeEEEEecCCCEEEEEECC------CcEEEEECCCCce
Q 005913          436 ILSSSA-D-----TTIRLWSTKLNANLVCYK------GHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQP  497 (670)
Q Consensus       436 L~s~s~-D-----g~I~lwd~~~~~~~~~~~------~h~~~V~~l~~sp~g~~l~s~s~d------g~v~lwd~~~~~~  497 (670)
                      |+..+. +     +.|.+++..++.......      ..........|+|+|+.++.....      ..+...+...+..
T Consensus        55 iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          55 IAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             EEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             EEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            885532 2     247777877665543221      122345678999999998876432      2344555554433


Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEcCC-----------cEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK-----------TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg-----------~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ...   +........+.+.+..++......           ....+....... .....+........++++. .+....
T Consensus       135 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~  209 (281)
T d1k32a2         135 VPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR-IYFITD  209 (281)
T ss_dssp             EEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE-EEEEEC
T ss_pred             EEe---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc-cceecc
Confidence            221   223333444444444444332221           112222222222 2233344445566666653 223332


Q ss_pred             C--CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          567 E--DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       567 ~--dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      .  ...|.++|+.++... .+..+. ......|+|||+.|+.. .++.|.++|+.+++.
T Consensus       210 ~~~~~~l~~~d~~g~~~~-~lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         210 IDGFGQIYSTDLDGKDLR-KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI  265 (281)
T ss_dssp             TTSSCEEEEEETTSCSCE-ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE
T ss_pred             cccccceEEEeCCCCceE-EeecCC-CcccccCcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence            2  346888888766543 333332 12334689999987764 468899999988754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=0.0012  Score=63.38  Aligned_cols=205  Identities=8%  Similarity=-0.033  Sum_probs=137.0

Q ss_pred             eecCccCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEE-EEECCCcEEEEECCC
Q 005913          417 YQGHSGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWSMDR  494 (670)
Q Consensus       417 ~~~h~~~V~~l~~sp~~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~-s~s~dg~v~lwd~~~  494 (670)
                      +..+...+.+++|.+..+.|.-+ ..++.|+..++...............+.++++..-+..+. +-...+.|.+.+++.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            34455668889999887776655 4568899989886655555544445688899987555554 445677999999987


Q ss_pred             CceeEEecccCCCeeEEEEcCCCCEEEEEEcC---CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCe
Q 005913          495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGT  570 (670)
Q Consensus       495 ~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~  570 (670)
                      ......+......+..++++|...+++.....   +.|..-++............-.....+++.+.++.|+.+ ...+.
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~  190 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE
Confidence            66555555555778999999988877765433   235555665444443333333567899999887777665 46788


Q ss_pred             EEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcc
Q 005913          571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK  623 (670)
Q Consensus       571 I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~  623 (670)
                      |...|+........+.+... ..++++. ++.+..+-...+.|...|..++..
T Consensus       191 I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         191 AECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             EEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCCEEEEEECCCCcc
Confidence            99999876554444444333 4578775 444555555678888888876643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.92  E-value=0.00042  Score=66.33  Aligned_cols=132  Identities=13%  Similarity=0.058  Sum_probs=82.4

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-C-----CcEEEEECCCCceeE
Q 005913          428 SFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-D-----RTARIWSMDRIQPLR  499 (670)
Q Consensus       428 ~~sp~--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d-----g~v~lwd~~~~~~~~  499 (670)
                      ..+|+  |+.++-.+ +|.|.+.|+.++... .+..+...+...+|||||++||..+. +     ..|.+++..+++..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  99888665 457888899977654 45556677889999999999886642 2     247777887776554


Q ss_pred             Eec------ccCCCeeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 005913          500 IMA------GHLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS  564 (670)
Q Consensus       500 ~~~------~~~~~v~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s  564 (670)
                      ...      ..........|+|+|+.|+.....      ..+...+...+....   .+........+.+.+..++.
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  156 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP---LNLGPATHILFADGRRVIGR  156 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE---CCSCSCSEEEEETTEEEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE---ecCCccceeeecCCCeEEEe
Confidence            322      122345678999999999875432      234555655444332   22233334444444444443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.84  E-value=0.00023  Score=71.80  Aligned_cols=194  Identities=14%  Similarity=0.135  Sum_probs=125.4

Q ss_pred             EEEEcC---CCCEEEEEe-CCCeEEEEeCCCCceeEEeeC-CCccEeEEEEe--cCCCEEEEEECCC-------------
Q 005913          426 SASFSP---LGDFILSSS-ADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFN--PQGHYFASSSHDR-------------  485 (670)
Q Consensus       426 ~l~~sp---~~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~s--p~g~~l~s~s~dg-------------  485 (670)
                      .+++..   ||++|++.. .++.|.+.|+.+.++.....- ....+..+...  |+..|++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            456654   788877665 688999999999988665443 23345556554  4566777776532             


Q ss_pred             -----cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCC---------------------------------
Q 005913          486 -----TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---------------------------------  527 (670)
Q Consensus       486 -----~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg---------------------------------  527 (670)
                           .+.++|.++.+....+.. ......++++++|+++++.+.+.                                 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 366789888877766653 24577889999999999887431                                 


Q ss_pred             -----cEEEEECCC--CcEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCCe-----------eeEEeeCC
Q 005913          528 -----TVRLWDVSS--GECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR-----------CVTPLMGH  588 (670)
Q Consensus       528 -----~I~iwd~~~--~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~-~dg~I~iwDl~~~~-----------~~~~~~~h  588 (670)
                           .+.+.|.+.  +..+..+..-......+.++|||+++++++ .+.++.|+|+++-.           .+..-...
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence                 123334332  111111111122345789999999988765 68999999986321           11111112


Q ss_pred             CcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          589 TSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       589 ~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      .-....-+|+..|+-..|---|..|.-|++..
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecch
Confidence            22345668988887777777999999999854

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=0.016  Score=55.12  Aligned_cols=217  Identities=9%  Similarity=0.051  Sum_probs=137.9

Q ss_pred             CEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcC
Q 005913          353 GLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP  431 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  431 (670)
                      .+.+++|.+..+.|... ..++.|+..+++...                            ...........+.++++..
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~----------------------------~~~v~~~~~~~p~~iAvD~   88 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----------------------------PTTIIRQDLGSPEGIALDH   88 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----------------------------CEEEECTTCCCEEEEEEET
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC----------------------------cEEEEEeccccccEEEEec
Confidence            47889999877777655 455778777776421                            1112222235678899987


Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEEC-CCc--EEEEECCCCceeEEecccCCC
Q 005913          432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRT--ARIWSMDRIQPLRIMAGHLSD  507 (670)
Q Consensus       432 ~~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-dg~--v~lwd~~~~~~~~~~~~~~~~  507 (670)
                      -+..|. +-...+.|.+.++............-...+.+++.|...+++.... .+.  |.--+++..............
T Consensus        89 ~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~  168 (263)
T d1npea_          89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL  168 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred             cCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccc
Confidence            666665 4455779999999866554444444456889999996666554432 233  444466655544444444566


Q ss_pred             eeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEee
Q 005913          508 VDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM  586 (670)
Q Consensus       508 v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~  586 (670)
                      ...+++.+.++.|..+ ...+.|...|+........+.+.. ...+|++. .+....+-...+.|...|..+++.+..+.
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            7899999888777655 456789999987655544444433 34577775 33344444467889999999888776654


Q ss_pred             CCC-cceEEEEEcC
Q 005913          587 GHT-SCVWTLAYSC  599 (670)
Q Consensus       587 ~h~-~~V~sl~~s~  599 (670)
                      .+. ....++...+
T Consensus       247 ~~~~~~~~gi~v~~  260 (263)
T d1npea_         247 PHKQTRLYGITIAL  260 (263)
T ss_dssp             CSSCCCCCCEEEEC
T ss_pred             CCCCCCcceEEEeC
Confidence            332 3444555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.77  E-value=0.0035  Score=62.94  Aligned_cols=276  Identities=10%  Similarity=0.025  Sum_probs=145.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCC-----------cEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCc
Q 005913          353 GLNCASISQDGSLVAGGFSDS-----------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS  421 (670)
Q Consensus       353 ~V~~l~fs~d~~~La~g~~dg-----------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  421 (670)
                      ++.......+|++++.|+.+.           .+.+||..+..-..                         .......|.
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-------------------------~~~~~~~~~   75 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-------------------------RTVTVTKHD   75 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-------------------------CEEEECSCC
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEee-------------------------cCCCCCCcc
Confidence            344555567888888887431           26678876422110                         111112233


Q ss_pred             cCEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCceeEEeeCC-CccEeEEEEecCCCEEEEEECC------CcEEEEECC
Q 005913          422 GPVYSASFSPLGDFILSSSAD-TTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHD------RTARIWSMD  493 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~D-g~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d------g~v~lwd~~  493 (670)
                      ....+.++.+++.+++.|+.+ .++.+||..+......-... ...-...+..++|.+++.|+.+      ..+.+||..
T Consensus        76 ~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          76 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence            333456788999999888755 58999998876543321111 1112356677799999988753      368999987


Q ss_pred             CCceeEEec---------ccC-----CCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEec------CCC--CeE
Q 005913          494 RIQPLRIMA---------GHL-----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG------HRS--MIL  551 (670)
Q Consensus       494 ~~~~~~~~~---------~~~-----~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~------h~~--~I~  551 (670)
                      +.+-...-.         .+.     ..-..+..-++++.++.+...+.+.++|..+.........      +..  .-.
T Consensus       156 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (387)
T d1k3ia3         156 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  235 (387)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCccccccc
Confidence            754322110         000     0011122335677777777777788888776654322110      100  112


Q ss_pred             EEEE-cCCCCEEEEEECCC--------eEEEEeCCC---Ce-eeEEee--CCCcceEEEEEcCCCCEEEEEECCC-----
Q 005913          552 SLAM-SPDGRYMASGDEDG--------TIMMWDLAS---GR-CVTPLM--GHTSCVWTLAYSCEGSLLASGSADC-----  611 (670)
Q Consensus       552 ~l~~-sp~g~~l~sg~~dg--------~I~iwDl~~---~~-~~~~~~--~h~~~V~sl~~s~~g~~l~sgs~Dg-----  611 (670)
                      ++.+ ..+++.++.|+...        ...+.++..   .. ......  .+...-.+....++|++++.|+.++     
T Consensus       236 ~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~  315 (387)
T d1k3ia3         236 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  315 (387)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             EEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCC
Confidence            2222 34677777766321        233333321   11 111111  1111123455568999999988542     


Q ss_pred             ------cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEEEecCCcEEEEeeC
Q 005913          612 ------TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGAL  666 (670)
Q Consensus       612 ------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~La~gs~  666 (670)
                            ++.+||..+.             .+..+...+.....-......+||++|+.|+.
T Consensus       316 ~~~~~~~ve~Ydp~~~-------------~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         316 DSTPVFTPEIYVPEQD-------------TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCSBCCCCEEEEGGGT-------------EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcEeceEEEEECCCC-------------eEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence                  4667776543             22233333322211123345799999999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.029  Score=53.29  Aligned_cols=217  Identities=10%  Similarity=0.026  Sum_probs=133.7

Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEE
Q 005913          348 INTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS  426 (670)
Q Consensus       348 ~~~~~~V~~l~fs~d~~~La~g~-~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  426 (670)
                      ......+..++|++..+.|.-.. ..+.|.-.+++.....                        .............+.+
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~------------------------~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPDG   81 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCCE
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC------------------------cceEEEEeCCCCCcce
Confidence            34455688999998877776553 4555665555431100                        0111122223345667


Q ss_pred             EEEcCCCCEEEE-EeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecc
Q 005913          427 ASFSPLGDFILS-SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAG  503 (670)
Q Consensus       427 l~~sp~~~~L~s-~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~dg~v~lwd~~~~~~~~~~~~  503 (670)
                      +++.+.+..|.. -...+.|.+.++..................+++.|...+++...  ..+.|...+++..........
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence            888776665554 45667899999987766665666666788999998555554443  345677777776655555544


Q ss_pred             cCCCeeEEEEcCCCCEEEEE-EcCCcEEEEECCCCcEEEEEecCC--CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCe
Q 005913          504 HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGR  580 (670)
Q Consensus       504 ~~~~v~~v~~~p~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~h~--~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~  580 (670)
                      .......+++.+.++.|..+ ...+.|...|+.............  ....++++. .+....+-..++.|...+..++.
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence            55677899999887766665 456789999987655444333332  235567766 23344444466788888877776


Q ss_pred             eeEEeeCCC
Q 005913          581 CVTPLMGHT  589 (670)
Q Consensus       581 ~~~~~~~h~  589 (670)
                      ....+....
T Consensus       241 ~~~~~~~~~  249 (266)
T d1ijqa1         241 DVNLLAENL  249 (266)
T ss_dssp             CCEEEECSC
T ss_pred             ceEEEEcCC
Confidence            665554433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.03  Score=53.14  Aligned_cols=203  Identities=8%  Similarity=-0.068  Sum_probs=130.1

Q ss_pred             cCccCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc----eeEEeeCCCccEeEEEEecCCCEEEEE-ECCCcEEEEEC
Q 005913          419 GHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSM  492 (670)
Q Consensus       419 ~h~~~V~~l~~sp~~~~L~s~s-~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~-s~dg~v~lwd~  492 (670)
                      .....+.++.|.+..+.|.-.. ..+.|.-.++....    ...........+.++++.+.+..+..+ ...+.|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            3445678899998888776554 56677766665321    122233333456678888755554444 56678999999


Q ss_pred             CCCceeEEecccCCCeeEEEEcCCCCEEEEEE--cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCC
Q 005913          493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDG  569 (670)
Q Consensus       493 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg  569 (670)
                      +.................++++|...+|+...  ..+.|...++............-.....+++.+.++.|+.+ ...+
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            88776666666667789999999766666544  34567777775544444443334567899999987766665 5568


Q ss_pred             eEEEEeCCCCeeeEEeeCC--CcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCc
Q 005913          570 TIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST  622 (670)
Q Consensus       570 ~I~iwDl~~~~~~~~~~~h--~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~  622 (670)
                      .|...|+............  .....++++. ++.++.+-..++.|...+..++.
T Consensus       187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence            8999998755433333322  2345677776 34555555577888888766654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.047  Score=51.87  Aligned_cols=225  Identities=11%  Similarity=0.165  Sum_probs=142.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCCCEE
Q 005913          357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI  436 (670)
Q Consensus       357 l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~L  436 (670)
                      .-.+|..+.||.-+ ...++|||++...                            .+.... ...+|.--.|-. .+.|
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~----------------------------klks~~-~~e~VvfWkWis-~~~L  116 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHT-MTDDVTFWKWIS-LNTV  116 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTE----------------------------EEEEEE-CSSCCCEEEESS-SSEE
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhh----------------------------hhceEE-cCCCcEEEEecC-CCEE
Confidence            34567777777665 4579999998622                            222222 224565567764 3455


Q ss_pred             EEEeCCCeEEEEeCCCC-ceeEEeeCCC----ccEeEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEeccc
Q 005913          437 LSSSADTTIRLWSTKLN-ANLVCYKGHN----YPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGH  504 (670)
Q Consensus       437 ~s~s~Dg~I~lwd~~~~-~~~~~~~~h~----~~V~~l~~sp~g~~l~s~s-------~dg~v~lwd~~~~~~~~~~~~~  504 (670)
                      +..+. ..|+-|+++.. .+.+.+..|.    ..|-.-..+++.++++..|       -.|.+.+|+.++. ..+.+.||
T Consensus       117 ~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGh  194 (327)
T d1utca2         117 ALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  194 (327)
T ss_dssp             EEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred             EEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccce
Confidence            55544 47999999643 4566666553    4566677788888877654       2378899999875 45667777


Q ss_pred             CCCeeEEEEcCCC---CEEEEEE---cCCcEEEEECCCCc---------EEEEEecC---CCCeEEEEEcCCCCEEEEEE
Q 005913          505 LSDVDCVRWHINC---NYIATGS---SDKTVRLWDVSSGE---------CVRIFIGH---RSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       505 ~~~v~~v~~~p~~---~~l~tgs---~dg~I~iwd~~~~~---------~~~~~~~h---~~~I~~l~~sp~g~~l~sg~  566 (670)
                      .+....+...-+.   +.++.+.   ..+.+++.++....         .+..+...   .+-..++..|+.-..++.-+
T Consensus       195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT  274 (327)
T d1utca2         195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  274 (327)
T ss_dssp             EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred             eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe
Confidence            6555444433211   2333322   23678888886421         12222222   33456888999888999999


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEE
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK  614 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~  614 (670)
                      .-|.|++||+.++.++..-+-...+|...+-+.+..=+++...+|.|.
T Consensus       275 K~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         275 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            999999999999999987766666776555555444455555677654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.36  E-value=0.011  Score=59.38  Aligned_cols=183  Identities=13%  Similarity=0.095  Sum_probs=118.9

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEeeCCC---------------------------------------cc--EeEEEEec-
Q 005913          436 ILSSSADTTIRLWSTKLNANLVCYKGHN---------------------------------------YP--VWDVQFNP-  473 (670)
Q Consensus       436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~---------------------------------------~~--V~~l~~sp-  473 (670)
                      +.||+..|.|+++-+.+++.+..+...+                                       +.  --.+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            4567788888888887776665542100                                       00  11344443 


Q ss_pred             --CCCEEEEEE-CCCcEEEEECCCCceeEEecc-cCCCeeEEEEc--CCCCEEEEEEcCC------------------cE
Q 005913          474 --QGHYFASSS-HDRTARIWSMDRIQPLRIMAG-HLSDVDCVRWH--INCNYIATGSSDK------------------TV  529 (670)
Q Consensus       474 --~g~~l~s~s-~dg~v~lwd~~~~~~~~~~~~-~~~~v~~v~~~--p~~~~l~tgs~dg------------------~I  529 (670)
                        ||+|+++.. .+.+|.+.|+++.+...++.. ....+..++..  |+..|+++++.+.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              788877776 678999999999988765542 33455655554  5677888877632                  36


Q ss_pred             EEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---------------eEEEEe-------------------
Q 005913          530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---------------TIMMWD-------------------  575 (670)
Q Consensus       530 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg---------------~I~iwD-------------------  575 (670)
                      ..+|..+.+........ +....+.++|+|+++++.+.+.               .+.+++                   
T Consensus       176 t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            78899888877666533 4567899999999999877431               233333                   


Q ss_pred             ----CCC--C-eeeEEeeCCCcceEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 005913          576 ----LAS--G-RCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT  620 (670)
Q Consensus       576 ----l~~--~-~~~~~~~~h~~~V~sl~~s~~g~~l~sgs-~Dg~I~iwd~~~  620 (670)
                          .+.  + ..+..+... .....+.++|||+++++++ .+.+|.|+|+..
T Consensus       255 ~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             eeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                322  1 111112111 2245689999999887766 678999999864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.34  E-value=0.085  Score=53.64  Aligned_cols=239  Identities=13%  Similarity=0.170  Sum_probs=131.1

Q ss_pred             EEEEEEcCCCCEEEEEeC-C----CcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEE
Q 005913          354 LNCASISQDGSLVAGGFS-D----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS  428 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~-d----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  428 (670)
                      +...++|||++++|.+-+ +    ..|+++|+.+.....                           ..+.  ......++
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~---------------------------~~i~--~~~~~~~~  177 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------------------------DVLE--RVKFSCMA  177 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------------------------EEEE--EECSCCEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecc---------------------------cccc--cccccceE
Confidence            345678999999996532 2    348999988632110                           0111  11124578


Q ss_pred             EcCCCCEEEEEeCC----------------CeEEEEeCCCCce--eEEeeCCCc--cEeEEEEecCCCEEEEEEC---CC
Q 005913          429 FSPLGDFILSSSAD----------------TTIRLWSTKLNAN--LVCYKGHNY--PVWDVQFNPQGHYFASSSH---DR  485 (670)
Q Consensus       429 ~sp~~~~L~s~s~D----------------g~I~lwd~~~~~~--~~~~~~h~~--~V~~l~~sp~g~~l~s~s~---dg  485 (670)
                      |+++++.|+....+                ..|..|.+.+...  ...+.....  .+..+..++++.+++....   ++
T Consensus       178 W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~  257 (430)
T d1qfma1         178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP  257 (430)
T ss_dssp             ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred             EcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCc
Confidence            99999987755432                2577888776543  345554333  4566778889998765432   33


Q ss_pred             cEEEE--ECCCCc--------eeEEecccCCCeeEEEEcCCCCEEEEEE---cCCcEEEEECCCCcE--EEEEe-cCCCC
Q 005913          486 TARIW--SMDRIQ--------PLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC--VRIFI-GHRSM  549 (670)
Q Consensus       486 ~v~lw--d~~~~~--------~~~~~~~~~~~v~~v~~~p~~~~l~tgs---~dg~I~iwd~~~~~~--~~~~~-~h~~~  549 (670)
                      ...+|  ++....        ....+......+.-+ -+.++.+++...   .++.|...++.....  ...+. .+...
T Consensus       258 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~  336 (430)
T d1qfma1         258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (430)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSC
T ss_pred             cEEEEEeeCCCcccccccccceeEeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcc
Confidence            34444  443211        122233222333322 233333444333   235677777765422  12333 34444


Q ss_pred             eEEEEEcCCCCEEEEE-ECCC--eEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEE-E---CCCcEEEEeCCCCc
Q 005913          550 ILSLAMSPDGRYMASG-DEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-S---ADCTVKLWDVTTST  622 (670)
Q Consensus       550 I~~l~~sp~g~~l~sg-~~dg--~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sg-s---~Dg~I~iwd~~~~~  622 (670)
                      +..-.++..+.+|+.. -.++  .|+++++.++..........+.|..+...++...+... +   .-.++.-+|+.+++
T Consensus       337 ~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         337 VLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             eeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            5444444445566554 3554  58899998887665555455667666666655543332 2   22678888888764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.77  E-value=0.36  Score=50.71  Aligned_cols=185  Identities=13%  Similarity=0.082  Sum_probs=115.0

Q ss_pred             CCeEEEEeCCCCceeEEeeCCC-------------------------------------ccEe-EEEEecCCCEEEEEEC
Q 005913          442 DTTIRLWSTKLNANLVCYKGHN-------------------------------------YPVW-DVQFNPQGHYFASSSH  483 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-------------------------------------~~V~-~l~~sp~g~~l~s~s~  483 (670)
                      .|.|+-+|+.+++.+-.+....                                     ..+| ..++.+....+..+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            6789999999999887654321                                     1232 2455666555555433


Q ss_pred             ----------------CCcEEEEECCCCceeEEecccCCCee---------EEEEcCCCC---EEEEEEcCCcEEEEECC
Q 005913          484 ----------------DRTARIWSMDRIQPLRIMAGHLSDVD---------CVRWHINCN---YIATGSSDKTVRLWDVS  535 (670)
Q Consensus       484 ----------------dg~v~lwd~~~~~~~~~~~~~~~~v~---------~v~~~p~~~---~l~tgs~dg~I~iwd~~  535 (670)
                                      ...+...|.++++.+..++....++.         ......+++   .++.++.+|.++++|..
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence                            24677889999998877764332221         122223443   46778899999999999


Q ss_pred             CCcEEEEEecCC-------------------------------------CC--eEEEEEcCCCCEEEEEECC--------
Q 005913          536 SGECVRIFIGHR-------------------------------------SM--ILSLAMSPDGRYMASGDED--------  568 (670)
Q Consensus       536 ~~~~~~~~~~h~-------------------------------------~~--I~~l~~sp~g~~l~sg~~d--------  568 (670)
                      +|+.+.......                                     +.  -...+++|+...++....+        
T Consensus       335 tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~  414 (571)
T d2ad6a1         335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414 (571)
T ss_dssp             TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred             CCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccc
Confidence            998874322100                                     00  0125677776666553322        


Q ss_pred             -----------------------------CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 005913          569 -----------------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       569 -----------------------------g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~  619 (670)
                                                   |.|.-+|+.+|+.+-+...-. +..+-..+-.+.++++|+.||.++.+|.+
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~  493 (571)
T d2ad6a1         415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECC
Confidence                                         468888888888775543211 11111112246688889999999999999


Q ss_pred             CCcccccc
Q 005913          620 TSTKVLKT  627 (670)
Q Consensus       620 ~~~~~~~~  627 (670)
                      +++.+.+.
T Consensus       494 tGe~lW~~  501 (571)
T d2ad6a1         494 DGKELWNF  501 (571)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            99876544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.68  E-value=0.041  Score=54.63  Aligned_cols=159  Identities=12%  Similarity=0.074  Sum_probs=97.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCC-----------eEEEEeCCCCceeE--Ee-eCCCccEeEEEEecCCCEEEEEECC-CcE
Q 005913          423 PVYSASFSPLGDFILSSSADT-----------TIRLWSTKLNANLV--CY-KGHNYPVWDVQFNPQGHYFASSSHD-RTA  487 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg-----------~I~lwd~~~~~~~~--~~-~~h~~~V~~l~~sp~g~~l~s~s~d-g~v  487 (670)
                      ++.......+|+.++.|+.+.           .+.+||..+++...  .. ..|.......++.++|.+++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            334444556788888777421           37799998775432  22 2233334466788999999988765 589


Q ss_pred             EEEECCCCceeEEeccc-CCCeeEEEEcCCCCEEEEEEcC------CcEEEEECCCCcEEEEEec---------CC----
Q 005913          488 RIWSMDRIQPLRIMAGH-LSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIG---------HR----  547 (670)
Q Consensus       488 ~lwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~l~tgs~d------g~I~iwd~~~~~~~~~~~~---------h~----  547 (670)
                      .+||..+..-...-... ...-.+++..++|++++.|+.+      ..+.+||..+.+-...-..         +.    
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            99998775443221111 1123456667899999988753      3689999987754322100         00    


Q ss_pred             -CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          548 -SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       548 -~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                       ..-..+...++|+.++.++..+.+.++|..+...
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence             0111233445777788887788888888877653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.29  E-value=0.12  Score=54.54  Aligned_cols=165  Identities=12%  Similarity=0.089  Sum_probs=102.2

Q ss_pred             CeEEEEeCCCCceeEEeeCCCccEeE---------EEEecCCC---EEEEEECCCcEEEEECCCCceeEEeccc------
Q 005913          443 TTIRLWSTKLNANLVCYKGHNYPVWD---------VQFNPQGH---YFASSSHDRTARIWSMDRIQPLRIMAGH------  504 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~---------l~~sp~g~---~l~s~s~dg~v~lwd~~~~~~~~~~~~~------  504 (670)
                      ..+.-.|+++++.+-.++.+...+|+         .....++.   .++.++.+|.++++|..+++++......      
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            45777899999988877754433332         22223443   4677889999999999998876432110      


Q ss_pred             -------------------------------CCCe--eEEEEcCCCCEEEEEEcC-------------------------
Q 005913          505 -------------------------------LSDV--DCVRWHINCNYIATGSSD-------------------------  526 (670)
Q Consensus       505 -------------------------------~~~v--~~v~~~p~~~~l~tgs~d-------------------------  526 (670)
                                                     .+..  ...+++|+...+++...+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                           0000  125677777766654432                         


Q ss_pred             ------------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCc-ceE
Q 005913          527 ------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS-CVW  593 (670)
Q Consensus       527 ------------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~-~V~  593 (670)
                                  |.|.-+|+.+|+.+........ ..+-.++-.+.++++|+.||.++.+|.++|+.+-++.-... .-.
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~-~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~  510 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS  510 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCCC-CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceec
Confidence                        4577888888888876543221 11111222466888899999999999999999987753221 111


Q ss_pred             EEEEcCCCC-EEEEEE
Q 005913          594 TLAYSCEGS-LLASGS  608 (670)
Q Consensus       594 sl~~s~~g~-~l~sgs  608 (670)
                      -+.|..+|+ ++++..
T Consensus       511 P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         511 PMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             CEEEEETTEEEEEEEE
T ss_pred             ceEEEECCEEEEEEEe
Confidence            255555776 554443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.05  E-value=0.14  Score=53.97  Aligned_cols=167  Identities=9%  Similarity=0.101  Sum_probs=104.3

Q ss_pred             CeEEEEeCCCCceeEEeeCCCccEeE---------EEEecCC---CEEEEEECCCcEEEEECCCCceeEEecccC-----
Q 005913          443 TTIRLWSTKLNANLVCYKGHNYPVWD---------VQFNPQG---HYFASSSHDRTARIWSMDRIQPLRIMAGHL-----  505 (670)
Q Consensus       443 g~I~lwd~~~~~~~~~~~~h~~~V~~---------l~~sp~g---~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~-----  505 (670)
                      ..|.-.|+++++..-.++.....+|.         +....++   ..++.++.+|.+.++|..+++++.....-.     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            35667788888887777654433432         2222244   356778899999999999988765432100     


Q ss_pred             -----------------------------C--CeeEEEEcCCCCEEEEEEcC----------------------------
Q 005913          506 -----------------------------S--DVDCVRWHINCNYIATGSSD----------------------------  526 (670)
Q Consensus       506 -----------------------------~--~v~~v~~~p~~~~l~tgs~d----------------------------  526 (670)
                                                   +  .-...+++|+...+++...+                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                         0  01145667777766654422                            


Q ss_pred             --------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcc-eEEEEE
Q 005913          527 --------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC-VWTLAY  597 (670)
Q Consensus       527 --------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~-V~sl~~  597 (670)
                              |.|.-||+.+|+.+...... .+..+-.++-.|.++++|+.||.++.+|..+|+.+-++.-..+. -.-++|
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty  508 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF  508 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEE
Confidence                    46788999999988766432 22222223335678889999999999999999999877632211 112455


Q ss_pred             cCCCC-EEEEEECC
Q 005913          598 SCEGS-LLASGSAD  610 (670)
Q Consensus       598 s~~g~-~l~sgs~D  610 (670)
                      ..+|+ +|++.+..
T Consensus       509 ~~dGkqyv~v~aG~  522 (560)
T d1kv9a2         509 ELAGRQYVAIMAGW  522 (560)
T ss_dssp             EETTEEEEEEEECC
T ss_pred             EECCEEEEEEEeCC
Confidence            56775 55544433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.94  E-value=0.91  Score=47.35  Aligned_cols=186  Identities=11%  Similarity=0.093  Sum_probs=115.6

Q ss_pred             CCeEEEEeCCCCceeEEeeCC------------------------------CccEe-EEEEecCCCEEEEEEC-------
Q 005913          442 DTTIRLWSTKLNANLVCYKGH------------------------------NYPVW-DVQFNPQGHYFASSSH-------  483 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h------------------------------~~~V~-~l~~sp~g~~l~s~s~-------  483 (670)
                      .|.|+-+|..+++.+-.+..-                              ...+| ..++.+....+..+..       
T Consensus       177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccc
Confidence            467999999999887766421                              11233 2455665555544321       


Q ss_pred             ------------CCcEEEEECCCCceeEEecccCCCee---------EEEEcCCC---CEEEEEEcCCcEEEEECCCCcE
Q 005913          484 ------------DRTARIWSMDRIQPLRIMAGHLSDVD---------CVRWHINC---NYIATGSSDKTVRLWDVSSGEC  539 (670)
Q Consensus       484 ------------dg~v~lwd~~~~~~~~~~~~~~~~v~---------~v~~~p~~---~~l~tgs~dg~I~iwd~~~~~~  539 (670)
                                  ...|.-.|.++++....++....++.         -+....++   ..++.++.+|.++++|..+|+.
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                        24577778889988776654333222         12222244   3567788899999999999998


Q ss_pred             EEEEecCCC------------------------------------CeEEEEEcCCCCEEEEEEC----------------
Q 005913          540 VRIFIGHRS------------------------------------MILSLAMSPDGRYMASGDE----------------  567 (670)
Q Consensus       540 ~~~~~~h~~------------------------------------~I~~l~~sp~g~~l~sg~~----------------  567 (670)
                      +.....-..                                    .-...+++|+...++....                
T Consensus       337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~  416 (560)
T d1kv9a2         337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (560)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence            754421100                                    0013566777666665432                


Q ss_pred             --------------------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          568 --------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       568 --------------------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                                          .|.|.-||+.+++.+-+..... +..+-.++-.+.+++.|+.||.++.+|..+++.+.+.
T Consensus       417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence                                2568889999998876654211 1111122335678889999999999999999877554


Q ss_pred             c
Q 005913          628 E  628 (670)
Q Consensus       628 ~  628 (670)
                      .
T Consensus       496 ~  496 (560)
T d1kv9a2         496 E  496 (560)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.93  E-value=0.3  Score=51.65  Aligned_cols=186  Identities=14%  Similarity=0.071  Sum_probs=114.1

Q ss_pred             CCeEEEEeCCCCceeEEeeCCC-------------------------------------ccEe-EEEEecCCCEEEEEEC
Q 005913          442 DTTIRLWSTKLNANLVCYKGHN-------------------------------------YPVW-DVQFNPQGHYFASSSH  483 (670)
Q Consensus       442 Dg~I~lwd~~~~~~~~~~~~h~-------------------------------------~~V~-~l~~sp~g~~l~s~s~  483 (670)
                      .|.|+-+|+.+++.+-.+....                                     ..+| ..++.+....+..+..
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg  260 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence            4889999999999887654211                                     1122 3455665555555432


Q ss_pred             ----------------CCcEEEEECCCCceeEEecccCCC---------eeEEEE-cCCC---CEEEEEEcCCcEEEEEC
Q 005913          484 ----------------DRTARIWSMDRIQPLRIMAGHLSD---------VDCVRW-HINC---NYIATGSSDKTVRLWDV  534 (670)
Q Consensus       484 ----------------dg~v~lwd~~~~~~~~~~~~~~~~---------v~~v~~-~p~~---~~l~tgs~dg~I~iwd~  534 (670)
                                      ...+...|.++++.+..++....+         ...+.. ..+|   ..++.++.+|.+.++|.
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence                            245778899999988776532211         112221 2344   36777889999999999


Q ss_pred             CCCcEEEEEecCC-------------CC--------------------------eEEEEEcCCCCEEEEEEC--------
Q 005913          535 SSGECVRIFIGHR-------------SM--------------------------ILSLAMSPDGRYMASGDE--------  567 (670)
Q Consensus       535 ~~~~~~~~~~~h~-------------~~--------------------------I~~l~~sp~g~~l~sg~~--------  567 (670)
                      .+|+.+.......             .+                          -...+++|+..+++....        
T Consensus       341 ~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~  420 (596)
T d1w6sa_         341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (596)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccc
Confidence            9999875432100             00                          012356665555544321        


Q ss_pred             -------------------------------CCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEE
Q 005913          568 -------------------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW  616 (670)
Q Consensus       568 -------------------------------dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iw  616 (670)
                                                     -|.|.-||+.+++.+-+... ..++.+-..+..|.+++.|+.||.++.+
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~  499 (596)
T d1w6sa_         421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKAR  499 (596)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred             ccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEE
Confidence                                           15688888888887654431 1122221223357788899999999999


Q ss_pred             eCCCCccccccc
Q 005913          617 DVTTSTKVLKTE  628 (670)
Q Consensus       617 d~~~~~~~~~~~  628 (670)
                      |..+++.+.+..
T Consensus       500 Da~TGe~LW~~~  511 (596)
T d1w6sa_         500 DSDTGDLLWKFK  511 (596)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             ECCCCcEeeEEE
Confidence            999998876553

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.74  Score=43.37  Aligned_cols=227  Identities=11%  Similarity=0.185  Sum_probs=141.7

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecccC-
Q 005913          428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHL-  505 (670)
Q Consensus       428 ~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~-~~~~~~~~~~~-  505 (670)
                      -.+|..+.|+.-+ ..++.++|+++.+.++.+.-.. +|.--.|-.+. .|+..+ +..|+-|+++. ..|.+.+..|. 
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~  144 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS  144 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGG
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhccc
Confidence            4567777777665 4689999999999888877544 66666676444 455543 36799999954 35777777664 


Q ss_pred             ---CCeeEEEEcCCCCEEEEEE-------cCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCC---CEEEEE---ECCC
Q 005913          506 ---SDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASG---DEDG  569 (670)
Q Consensus       506 ---~~v~~v~~~p~~~~l~tgs-------~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g---~~l~sg---~~dg  569 (670)
                         ..|..-..+++.++++..+       -.|.+.+|....+ .-+.+.||.+....+.+.-+.   ..++.+   ...+
T Consensus       145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence               3566777789999887644       2367889987654 344567775544444332211   122222   2336


Q ss_pred             eEEEEeCCCCe---e-----eEEee----CCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCccccccccccCCcccc
Q 005913          570 TIMMWDLASGR---C-----VTPLM----GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLR  637 (670)
Q Consensus       570 ~I~iwDl~~~~---~-----~~~~~----~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  637 (670)
                      .++|.++....   .     ...+.    .-..-..++..|+.-.++..-+.-|.|++||+.++..+....-....   -
T Consensus       224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~---i  300 (327)
T d1utca2         224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET---I  300 (327)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---E
T ss_pred             EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCc---e
Confidence            89999986521   1     11111    12344567888888889999999999999999998865433211111   0


Q ss_pred             cccccCCCCCCeEEEEEecCCcEEEEe
Q 005913          638 SLKTLPTKSTPVYSLQFSRRNLLFAAG  664 (670)
Q Consensus       638 ~~~~~~~~~~~V~~l~fs~~~~~La~g  664 (670)
                      .+.....+.+.|.++  .++|++|.+.
T Consensus       301 F~~a~~~~~~Gi~~V--Nr~GqVl~vs  325 (327)
T d1utca2         301 FVTAPHEATAGIIGV--NRKGQVLSVC  325 (327)
T ss_dssp             EEEEEETTTTEEEEE--ETTSEEEEEE
T ss_pred             EEeccCCCCceEEEE--CCCCeEEEEE
Confidence            112222333445444  4777776654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.57  E-value=0.13  Score=54.46  Aligned_cols=164  Identities=10%  Similarity=0.098  Sum_probs=98.8

Q ss_pred             eEEEEeCCCCceeEEeeCCCccEeEE---------EEecCC---CEEEEEECCCcEEEEECCCCceeEEecccCC-----
Q 005913          444 TIRLWSTKLNANLVCYKGHNYPVWDV---------QFNPQG---HYFASSSHDRTARIWSMDRIQPLRIMAGHLS-----  506 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~~~~h~~~V~~l---------~~sp~g---~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~-----  506 (670)
                      .|.-.|+++++..-.++.....+|..         ....++   ..++.++.+|.+.++|..+++.+........     
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            45566777777666555432222222         222233   3577788999999999999887654321100     


Q ss_pred             ------------------------------CeeEEEEcCCCCEEEEEEcC------------------------------
Q 005913          507 ------------------------------DVDCVRWHINCNYIATGSSD------------------------------  526 (670)
Q Consensus       507 ------------------------------~v~~v~~~p~~~~l~tgs~d------------------------------  526 (670)
                                                    .-..++++|+...+++...+                              
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                          01134677777766654332                              


Q ss_pred             -------------CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcce-
Q 005913          527 -------------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV-  592 (670)
Q Consensus       527 -------------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V-  592 (670)
                                   |.|.-||+.+|+.+....... +...=..+-.|.++++|+.||.++.+|..+|+.+-++.-..+.. 
T Consensus       444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~  522 (573)
T d1kb0a2         444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA  522 (573)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             cccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccc
Confidence                         357778888888887665332 22111233357788899999999999999999998776322111 


Q ss_pred             EEEEEcCCCC-EEEEEE
Q 005913          593 WTLAYSCEGS-LLASGS  608 (670)
Q Consensus       593 ~sl~~s~~g~-~l~sgs  608 (670)
                      .-+.|..+|+ +|+..+
T Consensus       523 ~P~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         523 APSTYMVDGRQYVSVAV  539 (573)
T ss_dssp             CCEEEEETTEEEEEEEE
T ss_pred             cCEEEEECCEEEEEEEe
Confidence            1144555776 444433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.22  E-value=1.8  Score=43.23  Aligned_cols=199  Identities=12%  Similarity=0.072  Sum_probs=109.6

Q ss_pred             cCEEEEEEcCCCCEEEEE-eCC----CeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECC------------
Q 005913          422 GPVYSASFSPLGDFILSS-SAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------------  484 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~-s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d------------  484 (670)
                      -.+..+++||++++++.+ +.+    .+|+++|+.+++.+...-. ......+.|++++..|+-...+            
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            344566789999988743 333    4699999999986542211 1122568999999988765432            


Q ss_pred             ----CcEEEEECCCCce--eEEecccC--CCeeEEEEcCCCCEEEEEEc---CCc--EEEEECCCCc--------EEEEE
Q 005913          485 ----RTARIWSMDRIQP--LRIMAGHL--SDVDCVRWHINCNYIATGSS---DKT--VRLWDVSSGE--------CVRIF  543 (670)
Q Consensus       485 ----g~v~lwd~~~~~~--~~~~~~~~--~~v~~v~~~p~~~~l~tgs~---dg~--I~iwd~~~~~--------~~~~~  543 (670)
                          ..|..|.+.+...  ...+....  ..+..+..+.++++++....   ++.  +.+.|+....        ....+
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  283 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI  283 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEee
Confidence                2577777766533  33444333  23556778899999875443   233  4444543221        12223


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEeCCCCee--eEEee-CCCcceEEEEEcCCCCEEEEE-ECCC--cEE
Q 005913          544 IGHRSMILSLAMSPDGRYMASGD---EDGTIMMWDLASGRC--VTPLM-GHTSCVWTLAYSCEGSLLASG-SADC--TVK  614 (670)
Q Consensus       544 ~~h~~~I~~l~~sp~g~~l~sg~---~dg~I~iwDl~~~~~--~~~~~-~h~~~V~sl~~s~~g~~l~sg-s~Dg--~I~  614 (670)
                      ........-+ .+..+.+++...   .++.|...++.....  ...+- .+...+..-.++..+.+|+.. ..++  .|+
T Consensus       284 ~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~  362 (430)
T d1qfma1         284 DNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (430)
T ss_dssp             CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             cccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEE
Confidence            2222333322 222333333332   347777777765432  12333 344445444444445555544 4554  578


Q ss_pred             EEeCCCCc
Q 005913          615 LWDVTTST  622 (670)
Q Consensus       615 iwd~~~~~  622 (670)
                      +++...+.
T Consensus       363 v~~~~~~~  370 (430)
T d1qfma1         363 LHDLATGA  370 (430)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            88887654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.19  E-value=1.3  Score=43.01  Aligned_cols=187  Identities=17%  Similarity=0.256  Sum_probs=114.1

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEec------CCCEEEEEEC--C--CcEEEEECCC-CceeE
Q 005913          431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP------QGHYFASSSH--D--RTARIWSMDR-IQPLR  499 (670)
Q Consensus       431 p~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp------~g~~l~s~s~--d--g~v~lwd~~~-~~~~~  499 (670)
                      |...+++.....+-|++||+. ++.+..+..  +.+..|..-.      ...-+++++.  +  .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345677777777779999997 666665542  3444444331      2223555552  2  3677887753 22333


Q ss_pred             Eeccc-------CCCeeEEEE--cCC-CC-EEEEEEcCCcEEEEECC---CC----cEEEEEecCCCCeEEEEEcCCCCE
Q 005913          500 IMAGH-------LSDVDCVRW--HIN-CN-YIATGSSDKTVRLWDVS---SG----ECVRIFIGHRSMILSLAMSPDGRY  561 (670)
Q Consensus       500 ~~~~~-------~~~v~~v~~--~p~-~~-~l~tgs~dg~I~iwd~~---~~----~~~~~~~~h~~~I~~l~~sp~g~~  561 (670)
                      .+...       ...+..+|+  ++. +. ++++...+|.+..|.+.   .+    +.++.|. -...+..|.+.+....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            33221       124556665  554 43 56677788999888763   33    3455664 3467889999999999


Q ss_pred             EEEEECCCeEEEEeCCC-----CeeeEEeeC--CCcceEEEEEc--CC--CCEEEEEECCCcEEEEeCCCC
Q 005913          562 MASGDEDGTIMMWDLAS-----GRCVTPLMG--HTSCVWTLAYS--CE--GSLLASGSADCTVKLWDVTTS  621 (670)
Q Consensus       562 l~sg~~dg~I~iwDl~~-----~~~~~~~~~--h~~~V~sl~~s--~~--g~~l~sgs~Dg~I~iwd~~~~  621 (670)
                      |+.+-++.-|+.++...     +..+....+  ..+.+-.|+.-  .+  |-+|+|.-.+++..|||....
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99999888777776542     223322222  34567777653  23  334555557789999998764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.18  E-value=1.3  Score=42.82  Aligned_cols=182  Identities=16%  Similarity=0.171  Sum_probs=102.2

Q ss_pred             EEEEEcCCCCEEEEEeC------------CCeEEEEeCCCCceeE-E--eeCC-----CccEeEEEE--ecCCC-EEEEE
Q 005913          425 YSASFSPLGDFILSSSA------------DTTIRLWSTKLNANLV-C--YKGH-----NYPVWDVQF--NPQGH-YFASS  481 (670)
Q Consensus       425 ~~l~~sp~~~~L~s~s~------------Dg~I~lwd~~~~~~~~-~--~~~h-----~~~V~~l~~--sp~g~-~l~s~  481 (670)
                      -.|...|+|..+++++.            .|.|.++|+.+..... .  +.+.     ......+..  .++|. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            35777888877766542            4889999987654322 1  1111     012233433  33554 35554


Q ss_pred             EC---CCcEEEEECCCCce-e---EEec-ccCCCeeEEEEcCCCCEEEEEEc---------------CCcEEEEECCCCc
Q 005913          482 SH---DRTARIWSMDRIQP-L---RIMA-GHLSDVDCVRWHINCNYIATGSS---------------DKTVRLWDVSSGE  538 (670)
Q Consensus       482 s~---dg~v~lwd~~~~~~-~---~~~~-~~~~~v~~v~~~p~~~~l~tgs~---------------dg~I~iwd~~~~~  538 (670)
                      .+   ..+|-+|++..... +   ..+. ......+.+++..++.+++|-..               -++..+|....+.
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence            43   45677777654322 1   1222 22345788888888888887321               1233444444444


Q ss_pred             EEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCeeeEEe--eCCCcceEEEEEcC-CCCEEEEE
Q 005913          539 CVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPL--MGHTSCVWTLAYSC-EGSLLASG  607 (670)
Q Consensus       539 ~~~~~~~h~~~I~~l~~sp~g~~l~sg-~~dg~I~iwDl~~~~~~~~~--~~h~~~V~sl~~s~-~g~~l~sg  607 (670)
                      ... ....-.....|+++|++++|+.+ +..+.|++|++.....+...  ..-.+..-.+.+.+ +|.+.+.+
T Consensus       198 ~~~-~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         198 VRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eEE-EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            332 32334567899999999877665 56788999998754322221  12334566788876 45544444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.33  Score=47.94  Aligned_cols=186  Identities=11%  Similarity=0.002  Sum_probs=103.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccccccCCCCCCCCCCCccccCCCCCccceeeeecCccCEEEEEEcCCC
Q 005913          354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG  433 (670)
Q Consensus       354 V~~l~fs~d~~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  433 (670)
                      .+.+++++...++++|+.++ ++|-.+.........  ....               .......  .-..|..++|+  +
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~--~~~~---------------~~~~~~~--~ip~v~~vafs--~   96 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS--DSTP---------------LTFKWEK--EIPDVIFVCFH--G   96 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS--SSCC---------------CCCSEEE--ECTTEEEEEEE--T
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhc--cCCC---------------Ccceecc--CCCCeEEEEee--C
Confidence            55678888888888888775 567765431110000  0000               0000001  11258889997  4


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecc-----cCCCe
Q 005913          434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG-----HLSDV  508 (670)
Q Consensus       434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~-----~~~~v  508 (670)
                      +.|+... ++.+..++...-........-..++..+.++|.  .++....++.+.++++..++......+     -.+.+
T Consensus        97 d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~  173 (381)
T d1xipa_          97 DQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ  173 (381)
T ss_dssp             TEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE
T ss_pred             CEEEEEe-CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCc
Confidence            4555554 456888887765555444445567888888765  567777889999999988764433211     12557


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEE-ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 005913          509 DCVRWHINCNYIATGSSDKTVRLW-DVSSGECVRIFIGHRSMILSLAMSPDGRYMASG  565 (670)
Q Consensus       509 ~~v~~~p~~~~l~tgs~dg~I~iw-d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg  565 (670)
                      .|++|++.|..++++..++ ..+- ++.....+.........+.+|.|-.+..++++-
T Consensus       174 ~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         174 LAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            7777877777777764322 1111 111111000001123457788888766666554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.73  E-value=2.2  Score=41.79  Aligned_cols=178  Identities=8%  Similarity=-0.033  Sum_probs=105.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------CCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEE
Q 005913          423 PVYSASFSPLGDFILSSSADTTIRLWSTK-----------LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS  491 (670)
Q Consensus       423 ~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~-----------~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd  491 (670)
                      ...-++.++...+++.|+.++ +.|-.+.           .........  -..|..++|+.+  .++.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            345678888777888888775 6666532           111111111  125788889754  45554 446688888


Q ss_pred             CCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe-----cCCCCeEEEEEcCCCCEEEEEE
Q 005913          492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-----GHRSMILSLAMSPDGRYMASGD  566 (670)
Q Consensus       492 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~-----~h~~~I~~l~~sp~g~~l~sg~  566 (670)
                      ............-...+..+.++|+  .++....++.+.++++..++......     .-.+.+.+++|++.|..++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            7765544444444566777877764  57777789999999999886543321     1235678888888888888774


Q ss_pred             CCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEE
Q 005913          567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS  608 (670)
Q Consensus       567 ~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs  608 (670)
                      .++.-.--++.....+.........|.++.|-.+..++++-+
T Consensus       190 g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         190 NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            332111112221111111112334678899987666666543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.64  E-value=2.1  Score=41.35  Aligned_cols=142  Identities=12%  Similarity=0.195  Sum_probs=87.3

Q ss_pred             eEEEEeCCCC-ceeEEeeCC-------CccEeEEEE--ec-CCC-EEEEEECCCcEEEEECC---CC----ceeEEeccc
Q 005913          444 TIRLWSTKLN-ANLVCYKGH-------NYPVWDVQF--NP-QGH-YFASSSHDRTARIWSMD---RI----QPLRIMAGH  504 (670)
Q Consensus       444 ~I~lwd~~~~-~~~~~~~~h-------~~~V~~l~~--sp-~g~-~l~s~s~dg~v~lwd~~---~~----~~~~~~~~~  504 (670)
                      +|.+|.+... ..+..+...       ...+..+|+  ++ +|. ++++...+|.+..|.+.   .+    +.++.+. -
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-M  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-C
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-C
Confidence            6778877532 223333221       123667777  55 354 56667788999888763   22    2445554 3


Q ss_pred             CCCeeEEEEcCCCCEEEEEEcCCcEEEEECCC-----CcEEEEEec--CCCCeEEEEEcC----CCCEEEEEECCCeEEE
Q 005913          505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-----GECVRIFIG--HRSMILSLAMSP----DGRYMASGDEDGTIMM  573 (670)
Q Consensus       505 ~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~-----~~~~~~~~~--h~~~I~~l~~sp----~g~~l~sg~~dg~I~i  573 (670)
                      .+.+..|.+......|+.+-.+.-|+.++...     +..+....+  ..+.+-.|++-.    +|-+|+|.-.+++..+
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            46789999999999999998887777666542     122222212  235677777543    3445666667899999


Q ss_pred             EeCCC-CeeeEEee
Q 005913          574 WDLAS-GRCVTPLM  586 (670)
Q Consensus       574 wDl~~-~~~~~~~~  586 (670)
                      ||..+ ...+..+.
T Consensus       259 ydr~~~~~~~g~F~  272 (353)
T d1h6la_         259 YERQGQNKYVADFQ  272 (353)
T ss_dssp             EESSTTCCEEEEEE
T ss_pred             EecCCCccccceEE
Confidence            99876 35665553

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.28  E-value=3.7  Score=42.61  Aligned_cols=58  Identities=24%  Similarity=0.398  Sum_probs=41.9

Q ss_pred             CeEEEEeCCCCeeeEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCCCcccccc
Q 005913          569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT  627 (670)
Q Consensus       569 g~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  627 (670)
                      |.|.-+|+.+|+.+-+...+. ++.+-..+..|.++++|+.||.++.+|..+++.+.+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~  523 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEE
Confidence            678888999988876665332 2222223346778889999999999999999876544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.13  E-value=0.42  Score=50.38  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=55.5

Q ss_pred             CcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcc-eEEEEEcCCCC-EE
Q 005913          527 KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC-VWTLAYSCEGS-LL  604 (670)
Q Consensus       527 g~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~-V~sl~~s~~g~-~l  604 (670)
                      |.|.-+|+.+|+.+.....+. ++..-.++..|.++++|+.||.++.+|..+|+.+-++.-..+. -.-+.|..+|+ ++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            678889999999988776443 2322223446778889999999999999999999887632211 11256667885 45


Q ss_pred             EEE
Q 005913          605 ASG  607 (670)
Q Consensus       605 ~sg  607 (670)
                      +..
T Consensus       545 ~i~  547 (582)
T d1flga_         545 GVT  547 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=1.1  Score=41.52  Aligned_cols=205  Identities=11%  Similarity=0.039  Sum_probs=88.7

Q ss_pred             eEEEEeCCCCceeEE--eeCCCccEeEEEEecCCCEEEEEEC---------CCcEEEEECCCCceeEEeccc--CCCeeE
Q 005913          444 TIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSH---------DRTARIWSMDRIQPLRIMAGH--LSDVDC  510 (670)
Q Consensus       444 ~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~g~~l~s~s~---------dg~v~lwd~~~~~~~~~~~~~--~~~v~~  510 (670)
                      .+.+||+.+++-...  +....... +++. -++..++.|+.         -..+.+||..+......-...  .....+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCcccee-EEEE-ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            577888887653332  11111111 1122 24556666552         135667777654332211111  111122


Q ss_pred             EEEcCCCCEEEEEEcCCc-----EEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEECC-----CeEEEEeCCCC
Q 005913          511 VRWHINCNYIATGSSDKT-----VRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED-----GTIMMWDLASG  579 (670)
Q Consensus       511 v~~~p~~~~l~tgs~dg~-----I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~sg~~d-----g~I~iwDl~~~  579 (670)
                      +.  .++..++.|+.++.     +..+|..+......-...... -.++... ++..++.|+.+     ..+..||..++
T Consensus        98 ~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~  174 (288)
T d1zgka1          98 GV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN  174 (288)
T ss_dssp             EE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             cc--cceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecccc
Confidence            22  25555665554433     445666665433211111111 1112222 34555555543     45788888766


Q ss_pred             eeeEEeeCC-CcceEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCccccccccccCCcccccccccCCCCCCeEEEE
Q 005913          580 RCVTPLMGH-TSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQ  653 (670)
Q Consensus       580 ~~~~~~~~h-~~~V~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  653 (670)
                      +....-... .....+... .++.+++.|+.++     .+.++|..+..-             ..+...+........+ 
T Consensus       175 ~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~-------------~~~~~~p~~r~~~~~~-  239 (288)
T d1zgka1         175 EWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETW-------------TFVAPMKHRRSALGIT-  239 (288)
T ss_dssp             EEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE-------------EECCCCSSCCBSCEEE-
T ss_pred             ccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceee-------------ecccCccCcccceEEE-
Confidence            533211111 111112222 2456666665443     455566554321             1122222222222222 


Q ss_pred             EecCCcEEEEeeCCCC
Q 005913          654 FSRRNLLFAAGALSKT  669 (670)
Q Consensus       654 fs~~~~~La~gs~dgs  669 (670)
                       .-++++++.|+.+++
T Consensus       240 -~~~~~l~v~GG~~~~  254 (288)
T d1zgka1         240 -VHQGRIYVLGGYDGH  254 (288)
T ss_dssp             -EETTEEEEECCBCSS
T ss_pred             -EECCEEEEEecCCCC
Confidence             336888888887654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.38  E-value=1.1  Score=47.16  Aligned_cols=188  Identities=15%  Similarity=0.066  Sum_probs=112.6

Q ss_pred             EEeCCCeEEEEeC-CCCceeEEeeCCC-----------ccEeEEEEecC----CCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          438 SSSADTTIRLWST-KLNANLVCYKGHN-----------YPVWDVQFNPQ----GHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       438 s~s~Dg~I~lwd~-~~~~~~~~~~~h~-----------~~V~~l~~sp~----g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      +++.++.|...|. .+++.+-.+....           ..-+.+++.++    +..++.++.|+.|.-.|.++++.+..+
T Consensus        68 ~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~  147 (596)
T d1w6sa_          68 HTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKV  147 (596)
T ss_dssp             ECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccc
Confidence            3344455666665 4566665553211           01133455442    346888999999999999999998877


Q ss_pred             cccCCCe-eEEEEcC--CCCEEEEEEc------CCcEEEEECCCCcEEEEEecCC-------------------------
Q 005913          502 AGHLSDV-DCVRWHI--NCNYIATGSS------DKTVRLWDVSSGECVRIFIGHR-------------------------  547 (670)
Q Consensus       502 ~~~~~~v-~~v~~~p--~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~h~-------------------------  547 (670)
                      ....... ..+.-.|  -++.+++|+.      .|.|+-+|+.+|+.+..+....                         
T Consensus       148 ~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~  227 (596)
T d1w6sa_         148 ENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGT  227 (596)
T ss_dssp             ECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHH
T ss_pred             cccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccccccc
Confidence            5221100 0000011  1345666543      4889999999999998765221                         


Q ss_pred             ------------C-CeEEEEEcCCCCEEEEEEC----------------CCeEEEEeCCCCeeeEEeeC--CCc------
Q 005913          548 ------------S-MILSLAMSPDGRYMASGDE----------------DGTIMMWDLASGRCVTPLMG--HTS------  590 (670)
Q Consensus       548 ------------~-~I~~l~~sp~g~~l~sg~~----------------dg~I~iwDl~~~~~~~~~~~--h~~------  590 (670)
                                  . .-..+++.+....++.+..                ...|.-.|+.+|+.+-.++.  |..      
T Consensus       228 ~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~  307 (596)
T d1w6sa_         228 GTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGV  307 (596)
T ss_dssp             HTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCC
T ss_pred             ccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccc
Confidence                        0 1123456666666666543                24588889999998876653  321      


Q ss_pred             -ceEEEEE-cCCC---CEEEEEECCCcEEEEeCCCCcccc
Q 005913          591 -CVWTLAY-SCEG---SLLASGSADCTVKLWDVTTSTKVL  625 (670)
Q Consensus       591 -~V~sl~~-s~~g---~~l~sgs~Dg~I~iwd~~~~~~~~  625 (670)
                       .+.-+.. ..+|   ..++.++.+|.+.++|..+++.+.
T Consensus       308 ~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         308 NVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             CCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence             1111111 2344   368888899999999999887653

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.37  E-value=0.034  Score=40.86  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Q 005913            3 ELQVVEFVATYLKKKGFSEAENALQAEIQR   32 (670)
Q Consensus         3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~   32 (670)
                      .++|++++++||.+.||..+-++|+.|+..
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l   36 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAEL   36 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCC
Confidence            478999999999999999999999999754

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=1.1  Score=41.45  Aligned_cols=104  Identities=15%  Similarity=0.125  Sum_probs=51.6

Q ss_pred             CCCEEEEEEcC-----CcEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEECC-----CeEEEEeCCCCeeeEE
Q 005913          516 NCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCVTP  584 (670)
Q Consensus       516 ~~~~l~tgs~d-----g~I~iwd~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~sg~~d-----g~I~iwDl~~~~~~~~  584 (670)
                      ++..++.|+.+     ..+..||..+++....-..... ...+.+. ..+..++.|+.+     .....+|..+......
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecc
Confidence            44555555543     3578888876654322111111 1112222 235566665544     3567778776543322


Q ss_pred             eeCCCcce-EEEEEcCCCCEEEEEECCC-----cEEEEeCCCC
Q 005913          585 LMGHTSCV-WTLAYSCEGSLLASGSADC-----TVKLWDVTTS  621 (670)
Q Consensus       585 ~~~h~~~V-~sl~~s~~g~~l~sgs~Dg-----~I~iwd~~~~  621 (670)
                      -....... .+++. .++++++.|+.++     .|.+||+.+.
T Consensus       227 ~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         227 APMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             cCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence            11111111 12222 3678888887654     3778887764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.83  E-value=5.3  Score=39.86  Aligned_cols=39  Identities=5%  Similarity=-0.066  Sum_probs=29.4

Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005913          344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK  382 (670)
Q Consensus       344 ~~t~~~~~~~V~~l~fs~d~~~La~g~~dg~I~Iwdl~~  382 (670)
                      .-.+...-..-++|+|.|||++|++--..|.|++++..+
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~   57 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPES   57 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCC
Confidence            334444456788999999999988775579999887654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.31  E-value=2.8  Score=42.06  Aligned_cols=112  Identities=13%  Similarity=0.189  Sum_probs=66.3

Q ss_pred             eEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEe--------cCCCCeEEEEEcCC---CCEEEEEE
Q 005913          498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--------GHRSMILSLAMSPD---GRYMASGD  566 (670)
Q Consensus       498 ~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--------~h~~~I~~l~~sp~---g~~l~sg~  566 (670)
                      +..+........+|+|.|+++.+++--..|.|++++..++.......        .-.+....|+|+|+   ..+++...
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsy   98 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEE
Confidence            33444445778899999999988876557999999988776543321        11245788999995   33444321


Q ss_pred             C-------C----C--eEEEEeCCCCe-------ee-EEee-CCCcceEEEEEcCCCCEEEEEEC
Q 005913          567 E-------D----G--TIMMWDLASGR-------CV-TPLM-GHTSCVWTLAYSCEGSLLASGSA  609 (670)
Q Consensus       567 ~-------d----g--~I~iwDl~~~~-------~~-~~~~-~h~~~V~sl~~s~~g~~l~sgs~  609 (670)
                      .       +    +  .+..+......       .+ ..+. ........|.|.|||.++++.+.
T Consensus        99 t~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_          99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1       1    1  13333332211       11 1111 11133568999999988777764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.07  E-value=1.1  Score=46.98  Aligned_cols=79  Identities=14%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCe-EEEEEcCCCC-EEE
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI-LSLAMSPDGR-YMA  563 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I-~~l~~sp~g~-~l~  563 (670)
                      .+.-||+.+++.+...... .+...-...-.+..+++|+.||.++.+|..+|+.+..+....+.. .-+.|..+|+ |++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             EEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            4667777777777655422 111111123367788999999999999999999998886433211 1144556786 444


Q ss_pred             EE
Q 005913          564 SG  565 (670)
Q Consensus       564 sg  565 (670)
                      ..
T Consensus       537 v~  538 (573)
T d1kb0a2         537 VA  538 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=88.06  E-value=5.7  Score=36.35  Aligned_cols=184  Identities=17%  Similarity=0.055  Sum_probs=89.8

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 005913          422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM  501 (670)
Q Consensus       422 ~~V~~l~~sp~~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~  501 (670)
                      ..|..|+-.  ..+.+... ||.|..|-......+-.-......|..+... +.+.++.  .|+.+..|.....-.....
T Consensus        26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G-~~~~~al--~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG-NYHSLAL--KDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC-SSEEEEE--ETTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC-CCceeee--eeeeeeccCCCcceeeccc
Confidence            457777664  23333344 8999999776543332112223345455432 2223332  4899999976432221111


Q ss_pred             cccCCCeeEEEEcCCCCEEEEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCee
Q 005913          502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC  581 (670)
Q Consensus       502 ~~~~~~v~~v~~~p~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~  581 (670)
                      ......+..++.....  .+ .-.|+.+..|.-...............|..++-..  .. .....++.++.|-......
T Consensus       100 ~~~~~~~~~i~~~~~~--~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~~~~~g~~~~~G~~~~g~  173 (273)
T d1jtdb_         100 AEARSGVDAIAAGAWA--SY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YT-ALAVKNGGVIAWGDNYFGQ  173 (273)
T ss_dssp             GGGGSSCCEEEEETTE--EE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SE-EEEEETTEEEEEECCTTST
T ss_pred             cccccceeEEeeeccc--cc-ccccccceecccCCCCceeeeccCCceEEEEeccc--ee-eeeecccceeEeecccCCc
Confidence            1122345555543322  22 22588999997543222111112223455444321  22 2334578888887654322


Q ss_pred             eEEeeCCCcceEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 005913          582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT  620 (670)
Q Consensus       582 ~~~~~~h~~~V~sl~~s~~g~~l~sgs~Dg~I~iwd~~~  620 (670)
                      ..........|.+++....  ..+.-. ||.|+.|=...
T Consensus       174 ~~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~  209 (273)
T d1jtdb_         174 TTVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNR  209 (273)
T ss_dssp             TSCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCT
T ss_pred             ccccccccCCccceeccce--eeEEEe-cCcEEEcCCCC
Confidence            2222223456777765433  222223 89999996543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=87.39  E-value=10  Score=34.45  Aligned_cols=167  Identities=16%  Similarity=0.065  Sum_probs=79.9

Q ss_pred             CCCeEEEEeCCCCceeEEeeCCCccEeEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecccCCCeeEEEEcCCCCEE
Q 005913          441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI  520 (670)
Q Consensus       441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~dg~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l  520 (670)
                      .||.+..|.................+..+.....  ..+ +-.|+.+..|.................|..++-  .. +.
T Consensus        81 ~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~--~~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~~-~~  154 (273)
T d1jtdb_          81 KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GV-YT  154 (273)
T ss_dssp             ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT--EEE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CS-SE
T ss_pred             eeeeeeccCCCcceeeccccccccceeEEeeecc--ccc-ccccccceecccCCCCceeeeccCCceEEEEec--cc-ee
Confidence            3789999976533221111111223434443322  222 224889999975432222112222234444443  22 22


Q ss_pred             EEEEcCCcEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCeeeEEeeCCCcceEEEEEcCC
Q 005913          521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE  600 (670)
Q Consensus       521 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~sg~~dg~I~iwDl~~~~~~~~~~~h~~~V~sl~~s~~  600 (670)
                      +....++.++.|-................|..|+....  ..+.-. ||.|+.|=....-.+..-......|..++-...
T Consensus       155 ~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~  231 (273)
T d1jtdb_         155 ALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW  231 (273)
T ss_dssp             EEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS
T ss_pred             eeeecccceeEeecccCCcccccccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc
Confidence            33345788888865433222222234456777776533  222223 799999954322111111112234667765433


Q ss_pred             CCEEEEEECCCcEEEEeCC
Q 005913          601 GSLLASGSADCTVKLWDVT  619 (670)
Q Consensus       601 g~~l~sgs~Dg~I~iwd~~  619 (670)
                      . .++.  .||.|..|=-.
T Consensus       232 ~-~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         232 Y-SLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             C-EEEE--ETTEEEEESTT
T ss_pred             e-EEEE--ECCEEEEECCC
Confidence            2 3333  38999999643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.23  E-value=16  Score=34.57  Aligned_cols=136  Identities=9%  Similarity=0.168  Sum_probs=80.9

Q ss_pred             cCCCC-EEEEEe---CCCeEEEEeCCCCceeE----EeeC-CCccEeEEEEecCCCEEEEEEC---------------CC
Q 005913          430 SPLGD-FILSSS---ADTTIRLWSTKLNANLV----CYKG-HNYPVWDVQFNPQGHYFASSSH---------------DR  485 (670)
Q Consensus       430 sp~~~-~L~s~s---~Dg~I~lwd~~~~~~~~----~~~~-h~~~V~~l~~sp~g~~l~s~s~---------------dg  485 (670)
                      .+++. +|++..   ...+|.+|++.......    ++.. ......++.+..+|.+++|-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            44565 344443   45678888876443222    2221 2345789999999988888421               12


Q ss_pred             cEEEEECCCCceeEEecccCCCeeEEEEcCCCCEEEEEE-cCCcEEEEECCCCcEEEE--EecCCCCeEEEEEcC-CCCE
Q 005913          486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSP-DGRY  561 (670)
Q Consensus       486 ~v~lwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~tgs-~dg~I~iwd~~~~~~~~~--~~~h~~~I~~l~~sp-~g~~  561 (670)
                      +..+|..+.+.. ..........+.|+++|++++|+++. ..+.|+.|++........  ...-.+..-.+.+.+ +|.+
T Consensus       187 ~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         187 WSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             CEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             ceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence            344555444433 33334456789999999998876654 567899999875433221  222345567788876 4555


Q ss_pred             EEEEE
Q 005913          562 MASGD  566 (670)
Q Consensus       562 l~sg~  566 (670)
                      .+++.
T Consensus       266 wva~~  270 (340)
T d1v04a_         266 WVGCH  270 (340)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            54443