Citrus Sinensis ID: 005931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------67
Protein Sequence
MAQGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANSSEPESVEEANESPKSLERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFLFLYLGVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYTKFKPKNKPQSDSTNSDVDSSTSVGYHAY
Secondary Structure (PSIPRED)
ccccccHHHHHHHHcccHHHHHHHHHccccHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccEEEEEEHHHcHHHHcccccccccccccccccEEEEcccccEEEEHHHHHHHHHHHHHHHEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccHHEEEEEEHHHHHHHHHHHHHEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAQGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENekletplheaccqgnHEVSAFLMEAnptvatklnhesQSAFSLACRQGHLDVVKLLINQSWlmefeedsvestpIYLAISRGHTDIAREILEvrprfagktdkngfsplhyassignvnMTKLLLNHNKDLALqynkdgytplhLAAINGRVKILVAFLssspasfdrLTTYGETVFHLAVRFDKYNAFKFLAESFNTclfhgqdqfgNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEqagtnddaTSLKKLFKTagnigspelsppaaEVKLtlespinlvkvtssstsmdpsmnmhlsrswcsspvrniepmltkellgnhtkqkpkgeeanssepesveeanespksleRYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVAILIATVtytggisppggvyqegplkgkslvgrTKAFKIFEISNNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATritvpddrgtgwvtdsllatgaGTLGFLFLYLGVELIRHRLRKLEWRAKKlgkqskvgvIRGRIqshytkfkpknkpqsdstnsdvdsstsvgyhay
Flexible Loop (DISEMBL)
MAQGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAgnigspelsPPAAEVKLTLESPINLVKVTssstsmdpsmnMHLSRSWCSSPVRNIEPMLTKEllgnhtkqkpkgeeanssepesveeanespkslerykdlssrhMKELKqryksrqekknEVHREALQNARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISnnialftslSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFLFLYLGVELIRHRLRKLEwrakklgkqskvgvirgriqshytkfkpknkpqsdstnsdvdsstsvgyhay
Low Complexity Region (SEG)
MAQGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANSSEPESVEEANESPKSLERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTslsiviilvsiiPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSllatgagtlgflflylgVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYTKFKPKNKPQsdstnsdvdsstsvGYHAY
Disordered region (IsUnstruct)
************IVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQA*************************************************************************************************************************************************NARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFLFLYLGVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHY*****************************
Disordered Region (DISOPRED)
****MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHT**********************************************************ALQNARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFLFLYLGVELIRHRL***************************************************GYHA*
Disordered Region (DISEMBL)
********LSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNH*****************************RYKDLSSRHM*****************HREALQNARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFLFLYLGVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYTKF**************************
Disordered Region (DISPRO)
*****AQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANSSEPESVEEANESPKSLERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFLFLYLGVELIRHRLRKLEW***************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANSSEPESVEEANESPKSLERYKDLSSRHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFLFLYLGVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYTKFKPKNKPQSDSTNSDVDSSTSVGYHAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	669	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.642	0.808	0.248	1e-25
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.653	0.833	0.259	2e-25
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	no	0.385	0.137	0.311	9e-22
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.464	0.527	0.266	8e-21
P53355	1430	Death-associated protein	no	no	0.322	0.151	0.334	3e-17
Q5F478	990	Serine/threonine-protein	no	no	0.418	0.282	0.272	3e-17
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.418	0.150	0.286	5e-17
Q8N8A2	993	Serine/threonine-protein	no	no	0.387	0.260	0.276	5e-17
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.373	0.057	0.293	7e-17
Q9VUX2	1226	E3 ubiquitin-protein liga	no	no	0.360	0.196	0.297	2e-16

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 222/494 (44%), Gaps = 64/494 (12%)

Query: 133 LMEFEEDSVESTPIYLAISRGHTDIAREILEVRP----RFAGKTDKNGFSPLHYASSIGN 188
           LM  + D+ E T +Y++ +    DI R ++        +   K+D N F   H A+  G+
Sbjct: 51  LMSVQNDAGE-TAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAF---HVAAKRGH 106

Query: 189 VNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVF 248
           + + K LL    +L    +    +PL+ AA+   ++I+ A L   P+    +   G+T  
Sbjct: 107 LGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSL 166

Query: 249 HLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYC 308
           H A R+      K L E  +  +   +D+ G T LH+AV  ++ + VE I++     +  
Sbjct: 167 HTAGRYGLLRIVKALIEK-DAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNE 225

Query: 309 RNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVT 368
           R+ K  TAL I  +              K    I S  L+  A EV     + IN     
Sbjct: 226 RDRKGNTALHIATR--------------KARPQITSLLLTFTAIEV-----NAIN----N 262

Query: 369 SSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANSSEPESVEEAN 428
              T+MD +  +  S S        I   L  E    H +   + +EA + +    +  +
Sbjct: 263 QKETAMDLADKLQYSES-----ALEINEALV-EAGAKHGRFIGREDEARALKRAVSDIKH 316

Query: 429 ESPKSL---ERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVAILIATVT 485
           E    L   E+     S   KEL++           +HREA+QN  N+I +VA+L A++ 
Sbjct: 317 EVQSQLLQNEKTNRRVSGIAKELRK-----------LHREAVQNTTNSITVVAVLFASIA 365

Query: 486 YTGGISPPGGVYQEGPLKGKS-LVGRTKAFKIFEISNNIALFTSLSIVIILVSIIPFERK 544
           +    + PG  + EG   G++ + GRT  F++F + N  +LF SL++V++ ++++ ++ +
Sbjct: 366 FLAIFNLPGQYFTEGSHVGQANIAGRT-GFRVFCLLNATSLFISLAVVVVQITLVAWDTR 424

Query: 545 KLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGA----GTLGFL 600
              +++ + +K+MW + +    A++A     V   +G  W+  ++   GA    GTL  +
Sbjct: 425 AQKKVVSVVNKLMWAACACTFGAFLAIAFAVVG--KGNSWMAITITLLGAPILVGTLASM 482

Query: 601 FLYLGVELIRHRLR 614
             +    + R R R
Sbjct: 483 CYF----VFRQRFR 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 132/508 (25%), Positives = 225/508 (44%), Gaps = 71/508 (13%)

Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVES-----TPIYLAISRGHTDIAREILE-VRPRF 168
           A R+G  D++  +I +   +E +E   E      T +Y+A   G+TD+ + +++      
Sbjct: 24  AVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKILMKHSDSVL 83

Query: 169 AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA 228
           AG   KNGF   H A+  GN+ +  +L+  N +L+  ++    T LH AA  G  +I+  
Sbjct: 84  AGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCF 143

Query: 229 FLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVL 288
            L           + G+T  H A R       K L E     +    D+ G T LH+AV 
Sbjct: 144 LLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEK-KAGMVTRVDKKGQTALHMAVK 202

Query: 289 RKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELS 348
            +N + V+ +++     I   ++K  T L I   A   + A  ++ + K        E+S
Sbjct: 203 GQNTEIVDVLMEADGSLINSADNKGNTPLHI---AVRKNRAEIVQTVLKYC------EVS 253

Query: 349 PPAAEVKLTLESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTK 408
             A                 S  T++D +    L           I P+L K  + N   
Sbjct: 254 RVAVN--------------KSGETALDIAEKTGL---------HEIVPLLQKIGMQNARS 290

Query: 409 QKPKGEEANSSEPESVEEANESPKSLERYKDLSSRHMKELKQRYKSRQE------KKNEV 462
            KP          E VE +  S K  E   ++      +L+Q  ++R+E      + N++
Sbjct: 291 IKP---------AEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKM 341

Query: 463 HREALQNARNTIILVAILIATVTYTGGISPPGGVYQEGPLK---GKSLVGRTKA-----F 514
           H E L NA N+  LVAILIATV +    + PG  Y + P     G SL G  +A     F
Sbjct: 342 HTEGLNNAINSTTLVAILIATVAFAAIFNVPGQ-YTDDPKDVPPGYSL-GEARAAPRPEF 399

Query: 515 KIFEISNNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRI 574
            IF + ++ ALF SL++V++  S++  ER+   +++ I +K+MW++   ++ A+++ + +
Sbjct: 400 LIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFV 459

Query: 575 TVPDDRGTGWVTDSLLATGAGTLGFLFL 602
            V +        +  LA G   +G L +
Sbjct: 460 VVGEK-------EKPLAVGVTAIGALIM 480

Arabidopsis thaliana (taxid: 3702)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  105 bits (263), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 139/279 (49%), Gaps = 21/279 (7%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLE---TPLHE 80
           R+LLQ DA ++       T LH+AA  GH      + K+  +  A  N +     TPLH 
Sbjct: 322 RLLLQYDAEIDDITLDHLTPLHVAAHCGH----HRVAKVLLDKGAKPNSRALNGFTPLHI 377

Query: 81  ACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDS 140
           AC + +  V   L++   ++   +     +   +A   GHL +VK L+ +          
Sbjct: 378 ACKKNHVRVMELLLKTGASI-DAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK 436

Query: 141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK 200
           VE TP+++A   GHT++A+ +L+ + +   K  K+  +PLH A+ IG+ NM KLLL +N 
Sbjct: 437 VE-TPLHMAARAGHTEVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNA 494

Query: 201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF 260
           +  L     G+TPLH+AA  G V+ ++A L    AS   +T  G T  H+A ++ K    
Sbjct: 495 NPNLATTA-GHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKVRVA 552

Query: 261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299
           + L E        G++  G T LH+AV   N   V+ ++
Sbjct: 553 ELLLERDAHPNAAGKN--GLTPLHVAVHHNNLDIVKLLL 589

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  102 bits (255), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 155/330 (46%), Gaps = 19/330 (5%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
           +T LHLAA+ G +  V +I K         N ++E  L         E  A + E   ++
Sbjct: 75  DTELHLAAQRGDLAAVQQILKDI-------NSQMEGIL------SGEEFDAEVAEIRASI 121

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES-TPIYLAISRGHTDIAR 159
             ++N   ++A   A  +GHLDVVK L+  S      + +     P+++A  +GH  I  
Sbjct: 122 VNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVE 181

Query: 160 EILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAI 219
            +L+     +     +  +PL  A+  G+  +   LL+   +L      +    LHLAA 
Sbjct: 182 VLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAAR 241

Query: 220 NGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFG 279
            G V+++ A LS  P    R+   G+T  H+AV+       K L ++ +  +    D+  
Sbjct: 242 QGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDA-DPAIVMQPDKSC 300

Query: 280 NTVLHLAVLRKNYQFVEYIIK--ETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFK 337
           NT LH+A  +K  + VE ++   +T  +   R+HK  TALDI E    +++++ +K+   
Sbjct: 301 NTALHVATRKKRAEIVELLLSLPDTNANTLTRDHK--TALDIAEGLPLSEESSYIKECLA 358

Query: 338 TAGNIGSPELSPPAAEVKLTLESPINLVKV 367
            +G + + EL+ P  E++ T+    N V +
Sbjct: 359 RSGALRANELNQPRDELRSTVTQIKNDVHI 388

Arabidopsis thaliana (taxid: 3702)

>sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 OS=Homo sapiens GN=DAPK1 PE=1 SV=6

 Score = 90.9 bits (224), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 29  NKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE 88
           NK  L  +D S   ALH+AAR+GH ++   +          + E+ ETPLH A   G + 
Sbjct: 434 NKCPLDVKDKSGEMALHVAARYGHADVAQLLCSFGSNPNIQDKEE-ETPLHCAAWHGYYS 492

Query: 89  VSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSW-LMEFEEDSVESTPIY 147
           V+  L EA   V  K N E ++    A  +G+ D+V+ L      L   ++D      ++
Sbjct: 493 VAKALCEAGCNVNIK-NREGETPLLTASARGYHDIVECLAEHGADLNACDKDG--HIALH 549

Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           LA+ R   ++ + +L  +  F    D++G +PLH A   GN+ +   L   N +L +  N
Sbjct: 550 LAVRRCQMEVIKTLLS-QGCFVDYQDRHGNTPLHVACKDGNMPIVVALCEANCNLDIS-N 607

Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA 251
           K G TPLHLAA NG + + V +L    AS + LTT G+T   LA
Sbjct: 608 KYGRTPLHLAANNGILDV-VRYLCLMGASVEALTTDGKTAEDLA 650

Isoform 2 cannot induce apoptosis but can induce membrane blebbing.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 128/294 (43%), Gaps = 14/294 (4%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
           +D    TAL LAA  GH E V  +      +   +N    TPLH +   G+      L+E
Sbjct: 596 KDEKGRTALDLAAFKGHAECVEALISQGASVTVKDNVTKRTPLHASVINGHTPCLRLLLE 655

Query: 96  A--NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
              NP V      + Q+   LA   GH+D V LL+ +   ++   D +  T ++  I  G
Sbjct: 656 VADNPDVTDA---KGQTPLMLAVAYGHIDAVSLLLEKEASVD-AADLLGCTALHRGIMTG 711

Query: 154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN---HNKDLALQYNKDG 210
           H +  + +LE       K D  G +PLH+A++ G+      LL      +D +L+ N+ G
Sbjct: 712 HEECVQMLLEKEVSILCK-DARGRTPLHFAAARGHATWLSELLQIALSEEDCSLKDNQ-G 769

Query: 211 YTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTC 270
           YTPLH A  NG    +   L      F +      +  H AV  D  N    L  + +  
Sbjct: 770 YTPLHWACYNGHENCIEVLLEQK--FFRKFYGNSFSPLHCAVINDHENCASMLIGAIDAS 827

Query: 271 LFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAG 324
           + + +D  G T LH A    + + ++ ++  +   +   +H  +TAL +  Q G
Sbjct: 828 IVNCKDDKGRTPLHAAAFADHVECLQLLLSHSA-QVNAVDHAGKTALMMAAQNG 880

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 139/304 (45%), Gaps = 24/304 (7%)

Query: 32  ILLQRDASLN-------TALHLAARFGHVELVTEITK--LCPELVAAENEKLETPLHEAC 82
           +LL+  AS++       T LH+A+  GH+ +V  + +    P +    N K+ETPLH A 
Sbjct: 385 LLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAA 441

Query: 83  CQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVE 142
             G+ EV+ +L++     A     + Q+    A R GH  +VKLL+           +  
Sbjct: 442 RAGHTEVAKYLLQNK-AKANAKAKDDQTPLHCAARIGHTGMVKLLLENGASPNLAT-TAG 499

Query: 143 STPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDL 202
            TP++ A   GH D A  +LE     A  T K GF+PLH A+  G V + +LLL H+   
Sbjct: 500 HTPLHTAAREGHVDTALALLEKEASQACMT-KKGFTPLHVAAKYGKVRLAELLLEHDAH- 557

Query: 203 ALQYNKDGYTPLHLAAINGRVKILVAFL--SSSPASFDRLTTYGETVFHLAVRFDKYNAF 260
                K+G TPLH+A  +  + I+   L    SP S       G T  H+A + ++    
Sbjct: 558 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS---PAWNGYTPLHIAAKQNQIEVA 614

Query: 261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDII 320
           + L +   +   + +   G T LHLA    + + V  ++ +   +    N    T L ++
Sbjct: 615 RSLLQYGGSA--NAESVQGVTPLHLAAQEGHTEMVALLLSKQA-NGNLGNKSGLTPLHLV 671

Query: 321 EQAG 324
            Q G
Sbjct: 672 SQEG 675

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 118/275 (42%), Gaps = 16/275 (5%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
           RD    TAL LAA  GH E V  +      +   +N    TPLH +   G+      L+E
Sbjct: 596 RDEKGRTALDLAAFKGHTECVEALINQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLE 655

Query: 96  A--NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVE---STPIYLAI 150
              NP      + + Q+   LA   GH+D V LL+ +    E   D+V+    T ++  I
Sbjct: 656 IADNPEAVDVKDAKGQTPLMLAVAYGHIDAVSLLLEK----EANVDTVDILGCTALHRGI 711

Query: 151 SRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN---HNKDLALQYN 207
             GH +  + +LE       K D  G +PLHYA++ G+      LL      +D   + N
Sbjct: 712 MTGHEECVQMLLEQEVSILCK-DSRGRTPLHYAAARGHATWLSELLQMALSEEDCCFKDN 770

Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
           + GYTPLH A  NG    +   L      F +      T  H A+  D  N    L  + 
Sbjct: 771 Q-GYTPLHWACYNGNENCIEVLLEQK--CFRKFIGNPFTPLHCAIINDHGNCASLLLGAI 827

Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
           ++ +   +D  G T LH A    + + ++ +++ +
Sbjct: 828 DSSIVSCRDDKGRTPLHAAAFADHVECLQLLLRHS 862

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 89.7 bits (221), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 132/293 (45%), Gaps = 43/293 (14%)

Query: 43  ALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVAT 102
           ALHLA++ GHVE+V+E+ +    + AA  +K  T LH A   G  EV   L+    T   
Sbjct: 77  ALHLASKEGHVEVVSELLQREANVDAA-TKKGNTALHIASLAGQAEVVKVLV----TNGA 131

Query: 103 KLNHESQSAFS---LACRQGHLDVVKLLINQSWLMEFE-EDSVESTPIYLAISRGHTDIA 158
            +N +SQ+ F+   +A ++ HL+VVK L++         ED    TP+ +A+ +GH  + 
Sbjct: 132 NVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGF--TPLAVALQQGHDQVV 189

Query: 159 REILE------VR-P--RFAGKTD-------------------KNGFSPLHYASSIGNVN 190
             +LE      VR P    A + D                   K+GF+PLH A+  GN+N
Sbjct: 190 SLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNIN 249

Query: 191 MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHL 250
           +  LLLN    +      D  TPLH+A+  G    +V  L    A  D  T  G T  H 
Sbjct: 250 VATLLLNRAAAVDFTARND-ITPLHVASKRGNAN-MVKLLLDRGAKIDAKTRDGLTPLHC 307

Query: 251 AVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV 303
             R       + L +     L   ++  G + LH+A    +   V+ +++  V
Sbjct: 308 GARSGHEQVVEMLLDRAAPILSKTKN--GLSPLHMATQGDHLNCVQLLLQHNV 358

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster GN=mib1 PE=1 SV=3

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 8/249 (3%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
           +TAL  A++ GH+E++  + +   + V  E++  +  +H A       V   L +A   +
Sbjct: 569 HTALQAASQNGHIEVIQVLLRHAVD-VEIEDKDGDRAVHHAAFGDEAAVIEILAKAGADL 627

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
             + N   Q++  +A  +GHL+VVK L+        + DS   TP++ AIS+ H ++   
Sbjct: 628 NAR-NKRRQTSLHIAVNKGHLNVVKTLLTLGCHPSLQ-DSEGDTPLHDAISKEHDEMLSL 685

Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH-NKDLALQYNKD-GYTPLHLAA 218
           +L+         + NGF+ LH+A+  GN +  K+LL   N+   ++  KD GYT LHLAA
Sbjct: 686 LLDFGADIT-LNNNNGFNALHHAALKGNPSAMKILLTKTNRPWIVEEKKDDGYTALHLAA 744

Query: 219 INGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQF 278
           +N  V+I    +    A+ DR     +T  HLAV        K L +  +    +  D+ 
Sbjct: 745 LNNHVEIAELLVHMGKANMDRQNVNLQTALHLAVERQHVQIVKLLVQ--DGADLNIPDKD 802

Query: 279 GNTVLHLAV 287
           G+T LH A+
Sbjct: 803 GDTPLHEAL 811

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta (Dl) and Serrate (Ser) receptors, which act as ligands of Notch proteins. Positively regulates the Notch signaling by ubiquitinating the intracellular domain of Dl and Ser, leading to endocytosis of Dl and Ser receptors. Regulates a subset of Notch signaling events, including wing margin specification, leg segmentation and vein determination, that are distinct from those events requiring neuralize (neur) activity. Also modulates lateral inhibition, a neur- and Dl-dependent signaling event, suggesting a distinct but partially complementary function with neur.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	669
359482580	781	PREDICTED: uncharacterized protein LOC10	0.995	0.852	0.453	1e-158
225442529	758	PREDICTED: ankyrin repeat-containing pro	0.976	0.861	0.448	1e-157
255549878	597	ankyrin repeat-containing protein, putat	0.886	0.993	0.442	1e-135
224059128	534	predicted protein [Populus trichocarpa]	0.793	0.994	0.440	1e-126
357454831	638	Ankyrin repeat-containing protein [Medic	0.938	0.984	0.408	1e-121
357454833	636	Ankyrin repeat-containing protein [Medic	0.875	0.921	0.444	1e-121
449448162	625	PREDICTED: ankyrin repeat-containing pro	0.911	0.976	0.366	1e-114
255549880	648	ankyrin repeat-containing protein, putat	0.911	0.941	0.368	5e-99
255550978	595	ankyrin repeat-containing protein, putat	0.874	0.983	0.368	1e-95
224142976	591	predicted protein [Populus trichocarpa]	0.810	0.917	0.373	3e-92

>gi|359482580|ref|XP_002278844.2| PREDICTED: uncharacterized protein LOC100258390 [Vitis vinifera]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 328/723 (45%), Positives = 446/723 (61%), Gaps = 57/723 (7%)

Query: 1   MAQGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDA-SLNTALHLAARFGHVELVTEI 59
           + + M  +L +AI  NDK A I L+   N+    +  A S +T LHLA+RFGH ELV EI
Sbjct: 62  LIKKMRTSLFKAIATNDKPAFIQLI---NEGYAFETTAKSKSTVLHLASRFGHGELVLEI 118

Query: 60  TKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG 119
            +L P +V A N+K ETPLHEAC  GN +V   L++ANP +   LN+E QS   LAC  G
Sbjct: 119 IRLHPRMVEARNKKGETPLHEACRNGNAKVVMLLLDANPWLGCALNNEDQSPLFLACHNG 178

Query: 120 HLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSP 179
           H  VV+L++ Q W++EFEED+ +   +++A+SRGHT +AR ILEV P FA KTD  G S 
Sbjct: 179 HPHVVELILKQPWMVEFEEDNPDMNCLHVAVSRGHTYVARRILEVCPNFAPKTDDMGLSA 238

Query: 180 LHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDR 239
           LHYA S  N+ +TK+LL  +  LA++++ +GYTPLHLAA+N +  IL  FL+  PASF  
Sbjct: 239 LHYACSGDNLEITKMLLGLDPGLAVKFDNNGYTPLHLAAMNAKDAILEEFLAMVPASFQL 298

Query: 240 LTTYGETVFHLAVRFDKYNAFKFLAESF-NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
           LT  GETVFHLAVRF+++NAF +LA++F +T LFH  D+ GNT+LHLA     ++  +YI
Sbjct: 299 LTREGETVFHLAVRFNRFNAFVWLAQNFGDTDLFHQPDKSGNTILHLAASAGRHRLADYI 358

Query: 299 IKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLF-KTAGNIGSPELSP--PAAEVK 355
           I +T ++I  RN    T LDI++QAG++     LK +  + A    S ELS   P   ++
Sbjct: 359 INKTRVEINFRNSGGHTVLDILDQAGSSSKNKHLKDMIIEKANGKRSIELSSLMPVPVIE 418

Query: 356 LTLESP----------------INLVKVTSSSTSMDPSMNMHLSRSWCSS-PVRNIEPML 398
            T   P                I L   T S +  + S +  L        P   IE   
Sbjct: 419 RTSPQPLAHEERPEDVRDEELKIPLESGTHSQSRFELSTDDKLDNHTTGHLPALYIEMNS 478

Query: 399 TKELLGNHTKQKPKGEEANSSE--PESVEEANESPKSLERYKDLSSRHMKELKQRYKSRQ 456
             + L +  ++K + ++ N SE  P        S   L R+K LS RH ++L + +K RQ
Sbjct: 479 GVDFLNHQVEEKSEIQDDNQSELRPALSNRTRYSSSCLCRHKHLSQRHRRDLLELHKVRQ 538

Query: 457 EKKNEVHREALQNARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKI 516
            ++NE+++EALQNARNTIILVA+LIATVT+T GISPPGGVYQEGP+KGKS VGRT +FK+
Sbjct: 539 NRQNEIYKEALQNARNTIILVAVLIATVTFTAGISPPGGVYQEGPMKGKSTVGRTTSFKV 598

Query: 517 FEISNNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITV 576
           F ISNNIALF+SL IVI+LVSIIPF+RK L+RLLV+ HK+MWV++S MATAY+AAT + +
Sbjct: 599 FMISNNIALFSSLCIVIVLVSIIPFQRKPLVRLLVVAHKIMWVAVSSMATAYVAATWVII 658

Query: 577 PDDRGTGWVTDSLLATGAGTLGFLFLYLGVELIRHRLRKLEWRAKKLGKQ---------- 626
           P DRGT W  + +     GT+G +F+YLG+ L+RH L KL+ R +K  K           
Sbjct: 659 PHDRGTTWTLEVVFCFSVGTVGTIFVYLGLVLVRHWLMKLKTRREKHTKSKGKKEIEEAE 718

Query: 627 ---SKVGVI--RGRIQSHYTKFKP-------------KNKPQSDSTNSDVDSST--SVGY 666
               K  VI   G  +  +TK+K              K++  + S+ SDVDS+    +GY
Sbjct: 719 AAADKFEVITSSGHWREKHTKWKAMKEIEEAGAAADDKSEDVTLSSYSDVDSARRLGLGY 778

Query: 667 HAY 669
           H Y
Sbjct: 779 HVY 781

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442529|ref|XP_002278869.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 330/736 (44%), Positives = 440/736 (59%), Gaps = 83/736 (11%)

Query: 2   AQGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDA-SLNTALHLAARFGHVELVTEIT 60
           A+ M  +L +AI  ND      LV   +K  L  R A S NT LHLA+RFGH E+V++I 
Sbjct: 38  AKKMESSLFKAIATNDMFTFFQLV--QDKDHLSARTARSRNTVLHLASRFGHHEMVSKII 95

Query: 61  KLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGH 120
           KL P      N+K ETPLHEAC  G+  V   L+E NP V   LNHE QSA  LAC  GH
Sbjct: 96  KLDPRTTEDCNKKGETPLHEACRHGHANVVMMLLETNPWVGCVLNHEDQSAMFLACSNGH 155

Query: 121 LDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT------------------------- 155
           L+VVKL++NQ WLMEFEED  + T +++A+SRGHT                         
Sbjct: 156 LEVVKLILNQPWLMEFEEDGSDLTCLHVAVSRGHTGKLQTSISCCFSLILWGSPDIPAFK 215

Query: 156 ----------------------DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
                                 D+ R+ILEV P FA KTDK GFS LHYA    N+ + K
Sbjct: 216 SFDEISKVKMFCCLTKFRYHIADVVRKILEVCPDFAPKTDKKGFSALHYACCGDNLEIVK 275

Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVR 253
           +LL  +  LA++++    TPLHLAA+ G+  +L  FL+  P SF  LT+ GETVFHL VR
Sbjct: 276 MLLRLDPGLAMKFDNSRCTPLHLAAMKGKGAVLEEFLAIVPTSFQFLTSEGETVFHLIVR 335

Query: 254 FDKYNAFKFLAESF-NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHK 312
           F++Y+AF  LA+ F +T LF   D+ GNT+LHLAV    ++  +YII +T ++I  RN +
Sbjct: 336 FNQYSAFVCLAQVFGDTLLFQRPDRNGNTILHLAVSAWRHRLADYIINKTGVEINFRNSR 395

Query: 313 NQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESP----------- 361
            QT LDI+ QAG+      L+ + K AG   S ELS     ++ T   P           
Sbjct: 396 GQTVLDILNQAGSTSKNMHLEDMIKKAGGKRSIELSSLMPLIEGTSPQPLAHDERPEDVH 455

Query: 362 -----INLVKVTSSSTSMD-PSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEE 415
                I L   T S +  + P+ +   + +    P  +IE     +LL +  ++K + ++
Sbjct: 456 GEELKIPLDFGTHSESRFELPTEDKLGNHTTEHLPALDIEKNFGVDLLNHQVEEKSEIQD 515

Query: 416 ANSSEPESVEEANESPKSLERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTII 475
            N ++  S         SL R+K LS RH ++L + ++ RQ ++NE+++EALQNARNTII
Sbjct: 516 DNQTKSSS--------SSLRRHKHLSQRHRRDLLELHQIRQNRQNEIYKEALQNARNTII 567

Query: 476 LVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIIL 535
           LVAILIATVT+T GISPPGGVYQ+GPLKGKS VGRT AFKIF ISNNIALF+SL IVI+L
Sbjct: 568 LVAILIATVTFTAGISPPGGVYQDGPLKGKSTVGRTIAFKIFMISNNIALFSSLCIVIVL 627

Query: 536 VSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAG 595
           VSIIPF+RK L+RLLV+ HKVMWV++SFMATAY+AAT + +P DRGT W  + LL+   G
Sbjct: 628 VSIIPFQRKSLVRLLVVAHKVMWVAVSFMATAYVAATWVIIPHDRGTKWTLELLLSLSIG 687

Query: 596 TLGFLFLYLGVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYTKFKPKNKPQSDSTN 655
           T+G +F+YLGV+L+RHRL KL+ R +K  K   +  I   + +       K    + S+ 
Sbjct: 688 TVGSVFVYLGVKLVRHRLTKLKTRREKHTKSKGMKQIEEAVPA-----ADKRNNITQSSY 742

Query: 656 SDVDSSTSV--GYHAY 669
           SDVDS+  +  G+H Y
Sbjct: 743 SDVDSALFLGQGFHVY 758

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549878|ref|XP_002515990.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223544895|gb|EEF46410.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 296/669 (44%), Positives = 397/669 (59%), Gaps = 76/669 (11%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQR--DASLNTALHLAARFGHVELVTEITKL 62
           M   L  A+ +ND      LV   N+ +LLQ+  D SLNT LHLA+R  H EL   I +L
Sbjct: 1   MDPRLLMAVKQNDNTCFERLVQ-ENRSVLLQQECDKSLNTILHLASRMEHTELARRIVQL 59

Query: 63  CPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLD 122
           CP+LV  EN   ETPLHE    GN +++  L+E NP +A+ LN   QSAFS+AC  GHLD
Sbjct: 60  CPDLVEMENAMGETPLHEVSRNGNADIATLLLETNPWMASMLNLADQSAFSIACSNGHLD 119

Query: 123 VVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHY 182
           VVKLL+N  WLM+ EE   E T +   IS    +I REIL++RP+FA KTDK+G  PLHY
Sbjct: 120 VVKLLLNLHWLMDIEE---ERTGLDEMIST--ENIVREILKMRPKFALKTDKDGCVPLHY 174

Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A       + +LL+      A ++NK+GYTPLH AA+NG   IL  F+S +P SF+ LT 
Sbjct: 175 ACEKRQFKIIRLLIQFAPASANKFNKNGYTPLHYAAMNGETAILEEFMSLAPTSFNFLTE 234

Query: 243 YG-ETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301
            G ET  HLA +F KYNAF  +A  + T L    D+                  EYII  
Sbjct: 235 LGQETALHLAAKFGKYNAFVLMASKY-TDLIQKADR-----------------NEYIIVA 276

Query: 302 TVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESP 361
           T + +  R+H+  TALD++ QA        +K L                          
Sbjct: 277 THIHVKLRDHEGHTALDLLSQANFCSKFKHIKDL-------------------------- 310

Query: 362 INLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANSSEP 421
             LVK  +S   +    N  L     +S             LG HT    + EE + +E 
Sbjct: 311 --LVKSKNSGNDVGNKSNKQLIIEAGTS-------------LGAHTV--IESEELDDNES 353

Query: 422 ESVEEANESPKSLERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVAILI 481
           E   +++     L+R+K LS R  KEL + +KSR+ ++ E  REALQNARNTIILVAILI
Sbjct: 354 E---QSSSGRGELDRHKHLSERRRKELIKHHKSRRNRQYETQREALQNARNTIILVAILI 410

Query: 482 ATVTYTGGISPPGGVYQ-EGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVSIIP 540
           A+V +T G++PPGGVYQ E  LKG+S+ GR  AFKIF ISN+IALFTSL IVIILVSIIP
Sbjct: 411 ASVAFTVGLNPPGGVYQDEETLKGQSIAGRKVAFKIFAISNSIALFTSLCIVIILVSIIP 470

Query: 541 FERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFL 600
           F+RK+LMRL+VITHK MW+++SFMATA++AA  + +P D+G  W+  +++A G G +  +
Sbjct: 471 FQRKELMRLMVITHKAMWIAVSFMATAFVAAGWVIMPHDQGI-WMLAAIIAIGGGIVTAV 529

Query: 601 FLYLGVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYTKFKPKNKPQSDSTNSDVDS 660
           F+YLGV ++RH LRKL+WR ++ GK++K+  +         + +P+ K QS+S+NSDV+S
Sbjct: 530 FIYLGVHIVRHWLRKLKWREER-GKKTKIFAVNTERSISKGEIQPRFKSQSESSNSDVES 588

Query: 661 STSVGYHAY 669
           + S GYH Y
Sbjct: 589 AKSFGYHTY 597

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059128|ref|XP_002299729.1| predicted protein [Populus trichocarpa] gi|222846987|gb|EEE84534.1| predicted protein [Populus trichocarpa]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 269/610 (44%), Positives = 357/610 (58%), Gaps = 79/610 (12%)

Query: 9   LSEAIVRNDKQALINLVGCSNKRILLQRDASL-NTALHLAARFGHVELVTEITKLCPELV 67
           L  A++ ND  A I+LV   N+ IL QR ++  NT LHLA+R G V+LV EI KL P +V
Sbjct: 1   LYRAVLLNDIHAFISLVR-KNEAILDQRTSTASNTVLHLASRLGFVDLVMEIIKLRPNMV 59

Query: 68  AAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
            AEN+ LETPLHEAC +G  ++   L++    VA+  N E+QS   +AC  GHL+VVK+L
Sbjct: 60  QAENKMLETPLHEACREGKSKIVLLLLQTGSWVASNFNMENQSPLLIACSYGHLEVVKVL 119

Query: 128 INQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG 187
           +NQ   +  E D+               +I + IL   P  A K D +G +PLHYA   G
Sbjct: 120 LNQPLFLRLEYDNPH-------------EIVKMILRACPNMAQKIDSDGCNPLHYACKNG 166

Query: 188 NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETV 247
           ++ +TKLLL H+ DL L YN  G+ PLHLAAI+G   IL  FL+ +P SFD LTT G+ V
Sbjct: 167 HLEITKLLLRHDLDLTLIYNNKGFKPLHLAAIHGNGTILEEFLAMAPTSFDCLTTDGDNV 226

Query: 248 FHLAVRFDKYNAFKFLAESF-NTCLFHGQDQFGNTVLHLAVLRKNYQF-VEYIIKETVLD 305
           FHL VRF+ ++AF  L   F +T LF   DQFGNT+LH+A+    Y   +  II E  +D
Sbjct: 227 FHLLVRFNAHSAFMCLEHVFGDTKLFQQPDQFGNTILHIAISGGLYHVRISVIINERKVD 286

Query: 306 IYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLV 365
           I  +N++  TALDI+  AG++ +   L+ + K AG      LS          ESP    
Sbjct: 287 INHQNNRGHTALDILNHAGSSLEIQDLRDMLKKAGGKLGTGLSWSQKS-----ESP---- 337

Query: 366 KVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANSSEPESVE 425
                  +++   ++ L     SSP R+                                
Sbjct: 338 -----RDALEREFDLQLQLG--SSPYRH-------------------------------- 358

Query: 426 EANESPKSLERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVAILIATVT 485
                 +S+ R K L   H        K    K+++ + EALQNARNT+ +VAI+IATVT
Sbjct: 359 ------ESIIRRKKLMKVH--------KRHHRKQHKAYTEALQNARNTLTVVAIMIATVT 404

Query: 486 YTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVSIIPFERKK 545
           +T GI+PPGGVYQEGPLKGKS  GRT AFK+F I+NNIALFTSL IVI LVSIIPF+RK 
Sbjct: 405 FTAGINPPGGVYQEGPLKGKSTAGRTSAFKVFSITNNIALFTSLCIVIALVSIIPFQRKP 464

Query: 546 LMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFLFLYLG 605
           LM+LLV+ HK MWV++SFMA AYIAA  + +P+  G  W  ++L++  AGTLG  F+YLG
Sbjct: 465 LMKLLVVAHKGMWVAVSFMAAAYIAAIWVIMPESHGNVWTFEALISIFAGTLGSAFIYLG 524

Query: 606 VELIRHRLRK 615
           V+L+ H LRK
Sbjct: 525 VKLVGHHLRK 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454831|ref|XP_003597696.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355486744|gb|AES67947.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/675 (40%), Positives = 392/675 (58%), Gaps = 47/675 (6%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQR-DASLNTALHLAARFGHVELVTEITKLC 63
           M Q   +AI +ND     ++V    + IL Q+ D + +  LHLA+++G +E+V+EI KLC
Sbjct: 1   MDQEFFDAIKKNDMITFSSIVK-EREGILNQKTDDTFSAPLHLASKYGCIEMVSEIVKLC 59

Query: 64  PELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDV 123
           P++V+AEN+ +ETP+HEAC Q N +V   L+E NPT A KLN   +SAF +AC  GHLD+
Sbjct: 60  PDMVSAENKNMETPIHEACRQENVKVLMLLLEVNPTAACKLNPTCKSAFLVACSHGHLDL 119

Query: 124 VKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYA 183
           V LL+N S ++  E    +    ++A  RGHTD+ RE+L   P      D+ G + LH+A
Sbjct: 120 VNLLLNLSEIVGQEVAGFDQACFHVAAVRGHTDVVRELLNKWPDLIQVIDEKGNTALHHA 179

Query: 184 SSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTY 243
              G+  +  +LL+ +  LALQYN +GYTPLHLA I G+V  L  F+  S A F   T  
Sbjct: 180 CYKGHFEIVWILLSRDSKLALQYNNNGYTPLHLAVIKGKVSTLDYFVVVSTAYFHYPTRE 239

Query: 244 GETVFHLAVRFDKYNAFKFLAE-SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            ETV HLAVR+  Y+A  FL   ++ T L H QD++GNTVLHLAV    ++  +++I  T
Sbjct: 240 EETVLHLAVRYGCYDALVFLVRVAYGTNLVHRQDKYGNTVLHLAVSGGRHKMADFLINRT 299

Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPI 362
            +DI  RN++  TALDI++QA  N +   L+ +F   G   S   +P +  ++L      
Sbjct: 300 KVDINTRNNEGLTALDILDQAMDNAENRQLQAIFIRDGGKRS---TPSSFSLEL------ 350

Query: 363 NLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANSSEP- 421
                  +++S  P+    LSR + S  +  +  M++ + +       P  E   S  P 
Sbjct: 351 ------DNTSSPSPTSRHSLSRRYISKEMEVLTEMVSYDCIS----PPPVSESTESISPQ 400

Query: 422 ----ESVEEANESPKSLERYKDLSSRHMK---ELKQRYKSRQEKKNEVHREALQNARNTI 474
               E  E    +P        +  +H     +++    ++++  +E+H+EAL NARNTI
Sbjct: 401 PQVSERFENGTYNPYYFSPTNLVKQKHHHNKGKIENVNHTKRKHYHEMHKEALLNARNTI 460

Query: 475 ILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVII 534
           +LVA+LIATVT+  GISPPGGVYQEGP KG S+ G T AFK+F ISN IALFTSLS+VI+
Sbjct: 461 VLVAVLIATVTFAAGISPPGGVYQEGPKKGISMAGETSAFKVFAISNIIALFTSLSVVIV 520

Query: 535 LVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLLATGA 594
           LVSIIPF RK    LL I HKVMWV+++FM T Y+AAT + +P ++   W++  LLA G 
Sbjct: 521 LVSIIPFRRKPQTILLTIAHKVMWVAVAFMGTGYVAATWVILPHNQEMQWLSVVLLALGG 580

Query: 595 GTLGFLFLYLGVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYTKFKPKNKPQSDST 654
           G LG +F+ L V L+ H LRK  WR K+  K+S  G                     +S 
Sbjct: 581 GFLGTIFISLSVMLVEHWLRKSSWRKKR--KESGDGTAES---------------DKESE 623

Query: 655 NSDVDSSTSVGYHAY 669
           +SD  SS   GYH+Y
Sbjct: 624 DSDFQSSYLQGYHSY 638

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454833|ref|XP_003597697.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355486745|gb|AES67948.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 277/623 (44%), Positives = 389/623 (62%), Gaps = 37/623 (5%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQR-DASLNTALHLAARFGHVELVTEITKLC 63
           M Q    AI  ND     ++V    + IL QR D + NT LHLA+++G +E+V+EI +LC
Sbjct: 1   MDQEFFNAIKNNDISTFSSIVKV-REGILNQRTDDTFNTPLHLASKYGCIEMVSEIVRLC 59

Query: 64  PELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDV 123
           P++V+AENE +ETP+HEAC Q N +V   L+E NPT A KLN   +SAF +AC  GHLD+
Sbjct: 60  PDMVSAENENMETPIHEACRQENVKVLMLLLEVNPTAACKLNPTCKSAFFVACSHGHLDL 119

Query: 124 VKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYA 183
           V LL+N S ++E      +    ++A SRGHTDI RE+L   P  +   D+NG S LH+A
Sbjct: 120 VNLLLNLSEIVEPGLAGFDQACFHIAASRGHTDIVRELLNRWPDLSQVIDENGNSALHHA 179

Query: 184 SSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTY 243
            + G+     +LL  + ++ALQYN +GYTPLHLA +NG+V IL  F+S S ASF  LT  
Sbjct: 180 CNKGHRETVWILLKRDSNVALQYNNNGYTPLHLAVMNGKVSILDDFVSGSAASFHYLTRE 239

Query: 244 GETVFHLAVRFDKYNAFKFLAESFN-TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            ETVFHLAVR+  Y+A  FL +  N T L H QD++GN+VLHLAV    ++  +++I +T
Sbjct: 240 EETVFHLAVRYGCYDALVFLVQVSNGTNLLHCQDRYGNSVLHLAVSGGRHKMTDFLINKT 299

Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPI 362
            LDI  RN +  TALDI++QA  + ++  L+ +F  AG   S                  
Sbjct: 300 KLDINTRNSEGMTALDILDQAMDSVESRQLQAIFIRAGGKRS------------------ 341

Query: 363 NLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEP----MLTKELLGNHTKQKPKGEEANS 418
               + SSS S++   N   S ++  SP R   P    +LT+ +  +     P  + ++S
Sbjct: 342 ----IQSSSFSLELDKNNSPSPAYRLSPSRRYIPNEMEVLTEMVSYDCISPPPVSKSSDS 397

Query: 419 SEP-----ESVEEANESPKSLERYKDLSSRHMK---ELKQRYKSRQEKKNEVHREALQNA 470
             P     E  E    +P  +     +  +H     +++    ++++  +E+H+EAL NA
Sbjct: 398 RSPQPQASERFENGTYNPYYVSPTNLVKQKHHHNKGKIENVNHTKRKHYHEMHQEALLNA 457

Query: 471 RNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLS 530
           RNTI+LVA+LIATVT+  GISPPGGVYQEGP++GKS+VGRT AFK+F ISNNIALFTSLS
Sbjct: 458 RNTIVLVAVLIATVTFAAGISPPGGVYQEGPMRGKSMVGRTSAFKVFAISNNIALFTSLS 517

Query: 531 IVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSLL 590
           +VI+LVSI+PF RK    LL+I HKVMWV+++FMAT Y+AAT + +P ++G  W++  LL
Sbjct: 518 VVIVLVSIVPFRRKPQTLLLIIAHKVMWVAVAFMATGYVAATWVILPHNQGMQWLSVLLL 577

Query: 591 ATGAGTLGFLFLYLGVELIRHRL 613
           A G G+LG +F+ L V L+ H L
Sbjct: 578 ALGGGSLGTIFIGLSVMLVEHSL 600

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448162|ref|XP_004141835.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/680 (36%), Positives = 382/680 (56%), Gaps = 70/680 (10%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQR-DASLNTALHLAARFGHVELVTEITKLC 63
           M QNL +AI  N    L+NLV  + + I+ QR + +L+T LHL +R GHVE+  E+ +LC
Sbjct: 1   MDQNLIQAIETN--AGLLNLVKENKETIIWQRTEEALDTVLHLVSRLGHVEMAQEVVELC 58

Query: 64  PELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDV 123
           PE+V AEN+ +ETP HEAC  G+ ++   L E N  V  K N E+ S F +AC  GHLDV
Sbjct: 59  PEMVVAENKNMETPFHEACRYGHVKIVKVLFETNHEVVYKRNVENLSGFFVACSNGHLDV 118

Query: 124 VKLLINQSWLME-FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHY 182
           V  L+ +  +    EE++ + T I++A S GHTD+ RE++   PR A   D NG   LH 
Sbjct: 119 VNFLLVEIGISSCLEENASDQTCIHVAASNGHTDVVRELVNASPRVAEMADLNGNLALHI 178

Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A S G   M   LL  + ++A+ YNK+GYTPLHLA +NG+V +L  FL  + ++F + T 
Sbjct: 179 ACSKGVREMVWTLLQRDANMAMHYNKNGYTPLHLATMNGKVAVLEDFLMMAASAFYQSTK 238

Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTC----LFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
            GET+FHL VR+ +Y+AF +L   F+ C    L H +D++ NT+LHLA+    YQ  EY+
Sbjct: 239 EGETIFHLVVRYGRYDAFVYL---FHLCNGGNLLHSRDRYSNTLLHLAIATHRYQIAEYL 295

Query: 299 IKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTL 358
           I+++ ++I  RN++ QTA DI++Q     +   L+ L   +G   + E+  P+ +     
Sbjct: 296 IRKSGVEINSRNYRGQTAFDILDQTQDTPETRRLEDLLIKSGGRRNAEILSPSQD----- 350

Query: 359 ESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANS 418
               N  +++S+  +   + +   SR W     +      ++ELL   T  +   +++N 
Sbjct: 351 ----NTTEISSTYRTNAAASSSSPSR-WSHVDDK------SQELLPPTTPFRSVSKQSNP 399

Query: 419 SEPESVEEANESPKSLERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVA 478
            +   +   N +    +R++                      +++ E LQNARNTI+LV+
Sbjct: 400 KKSTQITTTNYNSSPAKRHRV---------------------KIYTEGLQNARNTIVLVS 438

Query: 479 ILIATVTYTGGISPPGGVYQEGPLK-----GKSLVGRTKAFKIFEISNNIALFTSLSIVI 533
           ILIATVT+  GI+PPGGV Q+   K     G+S VG T AFKIF + N +ALF SL++VI
Sbjct: 439 ILIATVTFAAGINPPGGVNQQLDEKSKKKLGQSTVGDTTAFKIFTVCNVVALFISLALVI 498

Query: 534 ILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTG----WVTDSL 589
           +L+S+IPF RK  + ++ +  KVMW + +FMAT Y+AA  + +P +   G    WV   +
Sbjct: 499 VLISVIPFRRKPQILVVTVAQKVMWAAAAFMATGYVAAVWVVIPHNEEEGEKGKWVAVVV 558

Query: 590 LATGAGTLGFLFLYLGVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYTKFKPKNKP 649
           +A   G LG +F+ L V LI H L KL+ R +   ++ K        +   TK + +   
Sbjct: 559 VAVSGGILGIVFIGLSVMLIEHHLHKLKRRKRMRIREGK--------EESATKMEDE--- 607

Query: 650 QSDSTNSDVDSSTSVGYHAY 669
             +S NSD++     GY ++
Sbjct: 608 --ESLNSDIEHCCERGYRSF 625

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549880|ref|XP_002515991.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223544896|gb|EEF46411.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 233/633 (36%), Positives = 356/633 (56%), Gaps = 23/633 (3%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDA-SLNTALHLAARFGHVELVTEITKLC 63
           M   L EAIV  DK+ + N +   +K +L  R   + NT LHLA+  G VEL  +IT+ C
Sbjct: 1   MDARLVEAIVE-DKREIFNELVEEDKAVLEPRTIDTWNTVLHLASIHGRVELAKKITECC 59

Query: 64  PELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDV 123
           P + AAEN+K +TP HEAC +GN E+   L+  N       N E+ S   LAC  GHL++
Sbjct: 60  PYMAAAENKKGDTPFHEACRRGNLEMLRLLLAVNAEAGYAANAENHSPLFLACIHGHLEL 119

Query: 124 VKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYA 183
           VKLL+ +  L++   D  + T +  A+ +    I   ++   P  A K D+ G S LH A
Sbjct: 120 VKLLLKRPELVQV--DGFDQTYLRDALWQADIGIVEALVNELPTLAEKGDREGNSALHNA 177

Query: 184 SSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTY 243
              G+++M +LLL H       YN  GYTP+HLA  +G V+I+  FL   P++F  L++ 
Sbjct: 178 CIKGDLDMVRLLL-HRGSTDGWYNIYGYTPVHLAVKSGNVEIVQHFLEVLPSNFLMLSSN 236

Query: 244 GETVFHLAVRFDKYNAFKFLAESFNTC-----LFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
           GE+VFHLA R+ + + F +L    ++      L   +D  GNT+LHLA    NY+  EY 
Sbjct: 237 GESVFHLATRYGRNDVFFYLVHKLSSNDHIMHLLQSKDGKGNTILHLAC-DVNYKIAEYF 295

Query: 299 IKETVLDIYCRNHKNQTALDIIEQ-AGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLT 357
           I+E ++++  +N+   TALDI++  AG+ ++  +L+ L   AG     +++         
Sbjct: 296 IQEKIVEVNAQNNMEFTALDILDNSAGSGEERRALETLLIEAGGKRCADINVKELVYNKY 355

Query: 358 LESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIE--PMLTKELLGNHTKQKPKGEE 415
              P+ L         + P  +  +  +  +  V N +  P LT+ L  N    +P+   
Sbjct: 356 HSQPL-LTSRRKFQAFIKPKRSAEMKDNNVNGVVSNYDSRPTLTRSL-HNRAFSEPESRL 413

Query: 416 ANSSEPESVEEANESPKSLERYKDLSS-RHMKELKQRYKSRQEKKNE------VHREALQ 468
             +    S + ++ S +   + K  +S  H K+ ++    R  +K E      + +EALQ
Sbjct: 414 LQTPLFSSTDGSDRSRRGSSKAKRTTSLDHHKQRQENNPKRSTRKMEFSNLEKMQQEALQ 473

Query: 469 NARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTS 528
           NAR+TIILVA LIATVT+T GI+PPGGVYQ+GP+KGKS   +T AFK+F ++N  ALFTS
Sbjct: 474 NARSTIILVATLIATVTFTAGINPPGGVYQDGPMKGKSTAVKTIAFKVFAVTNTSALFTS 533

Query: 529 LSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDS 588
           L++V+ILV IIPF R+  +R++ I  ++M V++SFM T Y+AAT + +   RG  W+  +
Sbjct: 534 LAVVLILVRIIPFRREVQIRIIKIADRIMLVAVSFMGTCYLAATWLIMSYGRGIEWMPVT 593

Query: 589 LLATGAGTLGFLFLYLGVELIRHRLRKLEWRAK 621
           +L  GA  LG +F+ + V L   +LRK +W+ K
Sbjct: 594 VLLLGASILGSVFIAIYVMLDDQKLRKRQWQGK 626

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550978|ref|XP_002516537.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223544357|gb|EEF45878.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 249/675 (36%), Positives = 359/675 (53%), Gaps = 90/675 (13%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQR--DASLNTALHLAARFGHVELVTEITKL 62
           M   L E I++ D    ++L+   N+ I+ Q     S NT LHLAAR GH+ L  EI KL
Sbjct: 1   MDHRLQETILKGDVPTFLSLIQ-ENEDIMSQEVPSGSRNTILHLAARLGHLNLAEEIVKL 59

Query: 63  CPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLD 122
            PE+V+  N+K+ETPLHEAC QG  E+   L+E++P V  KLN E+++A  +AC++G ++
Sbjct: 60  RPEMVSEVNKKMETPLHEACRQGKMELVKLLVESDPWVLYKLNQENENALFVACQRGKVE 119

Query: 123 VVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHY 182
           VV  L+N  WL+  E D   +T +++A   G+ +I REI+++R  FA K D NG +PLH 
Sbjct: 120 VVNYLLNFQWLLTSEVDGY-ATSLHVAALGGYAEIVREIMKIRQDFAWKRDINGCTPLHL 178

Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A S G++  T+ LL ++ DL+   + DG TPLH AAI GRV ++   LS S    + +T 
Sbjct: 179 ACSKGHLETTRELLKYDADLSSLQDNDGRTPLHWAAIKGRVNVIDEVLSVSLEPAEMITK 238

Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE- 301
            GE                                   TVLHL V    +  V+Y+++  
Sbjct: 239 NGE-----------------------------------TVLHLGVKNNQFDAVKYLMETL 263

Query: 302 TVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESP 361
            + ++  R  K              D  T+L     TAG + +  +        L L   
Sbjct: 264 NITNLINRPDK--------------DGNTALH--LATAGKLSAMVI------YLLKLNGD 301

Query: 362 INLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLT----KELLGNHTKQKPKGEEAN 417
           +N++      T +D             S V N   +L     ++  G    Q P G   +
Sbjct: 302 VNVIN-RKGQTVLDV----------VESDVSNSGALLILPAIQDAGGKRGDQLPPG---S 347

Query: 418 SSEPESVEEANESPKSLERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILV 477
           +   + V+E N S  S    K L S +    +++++ R+EK+ E   E L+NARNTI +V
Sbjct: 348 TEIHQIVQEYNPSLPSSPPKKVLDSPNHHH-RRKHRRRREKQLEDQSEGLRNARNTITVV 406

Query: 478 AILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVS 537
           ++LIATVT+  GI+PPGG  Q   L G++++G+  +FK+F + N +ALFTSL IVI+LVS
Sbjct: 407 SVLIATVTFAAGINPPGGFNQ---LSGRTIMGKHTSFKVFAVCNVVALFTSLGIVIVLVS 463

Query: 538 IIPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTG--WVTDSLLATGAG 595
           IIPF RK +M+LLV+THK+MWVS+SFMA AYIAA    +P  +G G  WV  ++ A G G
Sbjct: 464 IIPFRRKSMMKLLVVTHKIMWVSMSFMAAAYIAAMWTVLPHGQGWGGVWVLVAIAAIGGG 523

Query: 596 TLGFLFLYLGVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYTKFKPKNKPQSDST- 654
               +F+ LG  L +H +RK EWR  K   + K       I S   + K   +   DST 
Sbjct: 524 CTVGIFMGLGFLLAQHWIRKSEWRKNK--DKRKDASPSSSI-SRIEELKTIKRGDCDSTS 580

Query: 655 NSDVDSSTSVGYHAY 669
           NSDVDSS   GYH Y
Sbjct: 581 NSDVDSSDQGGYHLY 595

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142976|ref|XP_002324803.1| predicted protein [Populus trichocarpa] gi|222866237|gb|EEF03368.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 233/623 (37%), Positives = 329/623 (52%), Gaps = 81/623 (13%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCP 64
           M + L EAI++ +  A + L+      I      S +  LH+ +RFGHVEL  EI +L P
Sbjct: 1   MDRRLREAILKGEVPAFLTLIQEDEHIIDQTIPGSSSNILHIVSRFGHVELAKEIVRLRP 60

Query: 65  ELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVV 124
           EL+  ENEK+ETPLHEAC +G  E+   L+E +P +  K+N ++ SA ++AC +G LDVV
Sbjct: 61  ELMFEENEKMETPLHEACREGKMEMVRLLVETDPWLVYKVNQDNGSALTVACERGKLDVV 120

Query: 125 KLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYAS 184
             L++   L+  E D   +T ++ A S GHTDI +EIL+ RP FA K D  G SPLH   
Sbjct: 121 DYLLSFPGLLMLELDGF-TTSLHAAASGGHTDIVKEILKARPDFAWKNDLQGCSPLHLCC 179

Query: 185 SIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYG 244
             G++ +T+ LL  + +L+   + DG TPLH AAI GRV ++   LS+S  S + +T +G
Sbjct: 180 KKGHLEVTRELLRFDAELSSLQDNDGRTPLHWAAIKGRVNVIDEILSTSLESAEVITKHG 239

Query: 245 ETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVL 304
           ETV                                   LHL V    Y+ V+Y+ +  +L
Sbjct: 240 ETV-----------------------------------LHLGVKNNQYEAVKYLTE--ML 262

Query: 305 DIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINL 364
           +I     K             ND  T+L     TAG + +  +        L L   +N 
Sbjct: 263 NITKLVDKPD-----------NDGNTALH--LATAGKLSTMVI------YLLKLGVDVNA 303

Query: 365 VKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKPKGEEANSSEPESV 424
           +      T+ D      +     +S V  I P L          Q   G+ ++   P S+
Sbjct: 304 IN-QRGQTAFDV-----VESDVSNSGVLLILPAL----------QDAGGKRSDQLPPSSI 347

Query: 425 E-EANESPKSL--ERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVAILI 481
           E +  +  KSL     K ++    K  ++    R+EK+ E+  E L+NARNTII+VA+LI
Sbjct: 348 EIQQIQQEKSLLSSSTKRMTESTTKHHRRSQHRRREKQLELQTEGLRNARNTIIVVAVLI 407

Query: 482 ATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTSLSIVIILVSIIPF 541
           ATVT+  GI+PPGG  Q+    G+S  GR  +FKIF + N +ALF SL  V+ LVSI+PF
Sbjct: 408 ATVTFAAGINPPGGFRQD---TGESTTGRHSSFKIFVVCNIVALFLSLGTVVFLVSIVPF 464

Query: 542 ERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTG--WVTDSLLATGAGTLGF 599
           +RK +M LL +THKVMW+SISFMA  YIAA    +P  RG G  WV  +++A G G    
Sbjct: 465 QRKSMMILLTVTHKVMWLSISFMAAGYIAAMWTILPHGRGRGRQWVFVAIVAIGGGCTMA 524

Query: 600 LFLYLGVELIRHRLRKLEWRAKK 622
           +F+ LGV L +H LRK EWR  K
Sbjct: 525 IFVGLGVLLAKHWLRKWEWRRSK 547

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	669
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.460	0.537	0.380	2.8e-84
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.742	0.928	0.309	9e-61
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.732	0.847	0.303	1.8e-48
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.855	0.951	0.277	3.8e-46
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.219	0.306	0.463	2.9e-44
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.533	0.596	0.336	1.7e-41
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.375	0.582	0.304	2.9e-25
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.458	0.498	0.276	5.4e-25
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.484	0.549	0.264	1.9e-21
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.385	0.579	0.262	5.2e-21

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
 Identities = 122/321 (38%), Positives = 173/321 (53%)

Query:     5 MAQNLSEAIVRNDKQALINLVGCSNKRILLQR---DASLNTALHLAARFGHVELVTEITK 61
             M   + +AI+ ND   L+ L    N  +L +R   D+   T LHLA   GH E+V  I K
Sbjct:    17 MVAPIIDAILANDVSTLLALAE-GNLSVLRERYHWDSLGGTVLHLATELGHKEIVEAIIK 75

Query:    62 LCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL 121
             LCP LV   N   +TPLH A   G+  + A ++ +     T +N   ++AF +ACR  + 
Sbjct:    76 LCPSLVGVTNLDGDTPLHFAARWGHATIVAQILASGYAEFTPVNGRGETAFVVACRYTNP 135

Query:   122 DVVKLLINQSWLMEFEEDSVESTPIYLAISRG-HTDIAREILEVRPRFAGKTDKNGFSPL 180
             DV  L++        E  S+     Y     G +TDIAR +LE  P+ A   D    +PL
Sbjct:   136 DVASLILE-------ETSSITIGEFYATFVLGEYTDIARRMLERFPKLAWNADGELSTPL 188

Query:   181 HYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRL 240
             H+A +  N+ +TK+LL  ++ LA + NKDG+TPLHLAA+   + IL  F   +P  FD L
Sbjct:   189 HHACNANNLEITKMLLEIDESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAPRYFDIL 248

Query:   241 TTYGETVFHLAVRFDKYNAFKFLAESFN-TCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299
             T   ETVFHLA       AF F+AES +   L H  D++GNTVLH AV+   Y  +  I 
Sbjct:   249 TPAKETVFHLAAEHKNILAFYFMAESPDRNNLLHQVDRYGNTVLHTAVMSSCYSVIVSIT 308

Query:   300 KETVLDIYCRNHKNQTALDII 320
              ET +D+  +N++   A+D+I
Sbjct:   309 YETTIDLSAKNNRGLKAVDLI 329

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 163/527 (30%), Positives = 259/527 (49%)

Query:   134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
             +E +++S   T ++LA+  G+ ++ ++I+E+ P     T+    +PLH A+ +G+ ++  
Sbjct:    19 LEEQDESFGGTFLHLAVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILL 78

Query:   194 LLLNHNKD--------------LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDR 239
             L+L    +              LA   NKDG+TPLH A +NG V+ L AF++ +P SFD 
Sbjct:    79 LMLESTAESIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFDS 138

Query:   240 LTTY-GETVFHLAVRFDKYNAFKFLAESFNTC-LFHGQDQFGNTVLHLAVLRKNYQFVEY 297
             +T    ETVFHLA R  K  AF F+A++ N   L +  D  GNTVLH A        V Y
Sbjct:   139 VTLQTSETVFHLAARHKKMEAFIFMAKNANLRRLLYELDGEGNTVLHAAASVGFLSLVSY 198

Query:   298 IIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLT 357
             I+ E  +++  +N K   A+D++     N D    K +    G+    E+   AA     
Sbjct:   199 IVHEIKIEVTTQNDKGFEAVDLL-----NKDDEDFKMMSMILGH--DSEIVQRAASSPRD 251

Query:   358 LESPINLVKVTSSSTSMDPSMNMHLSRSWCSSPVRNIEPMLTKELLGNHTKQKP--KGEE 415
               +P    +V +S    +  +   ++       V N E     E +   TK+    K   
Sbjct:   252 AYTPSTQTEVENSEIHHEQGL---VAPEIKEENVTN-ENNKVFEAIDLPTKEDGDLKMLA 307

Query:   416 ANSSEPESVEEANESPKSLERYKDLS-SRHMKELKQRYKSRQEKKNEVHREALQNARNTI 474
                SE   +  +     + E   ++  S  +  ++   +  + K+ E+  EALQNARNTI
Sbjct:   308 GTDSETFQLPSSRTGILTPETETEMVISNTLHGIRHGLRESRIKEKEMQSEALQNARNTI 367

Query:   475 ILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTXXXXXXX 534
              +VA+LIA+VT+T G++PPGGVYQ+G   GK+  G T AFK+F +SN+IALFT       
Sbjct:   368 TVVAVLIASVTFTCGLNPPGGVYQDGHFIGKATAGGTVAFKVFSVSNSIALFTSLCIVIL 427

Query:   535 XXXXXPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSXXXXXX 594
                  PF  K L   L+ITHK++W+++  MA+AY+A T +T+P  RG  WV  +      
Sbjct:   428 LLSIIPFRTKSLKTFLIITHKMIWLAVIAMASAYVAGTCVTLPHSRGNKWVLKATLVIAC 487

Query:   595 XXXXXXXXXXXVELIRHRLRKLEWRAKKLGKQSKVGVIRGRIQSHYT 641
                         +L  H  RK + R   + +   +      +  +Y+
Sbjct:   488 VMLGGMFIFLWFKLANHMSRKKKMRKNMMSRIETLNKAAAFVDGYYS 534

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 163/537 (30%), Positives = 255/537 (47%)

Query:   106 HESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR 165
             H + +   +A + GH ++V  +I     +    ++  +TP++LA   G  +I  ++LE  
Sbjct:    35 HLNNTVLHMAAKFGHRELVSKIIELRPSLVSSRNAYRNTPLHLAAILGDVNIVMQMLETG 94

Query:   166 PRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKI 225
                    + N  +PLH A    ++   +L+    + + L     G   L LA  +G   I
Sbjct:    95 LEVCSARNINNHTPLHLACRSNSIEAARLIAEKTQSIGL-----G--ELILAISSGSTSI 147

Query:   226 LVAFLSSSP--ASFDR-LTTYGE--TVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGN 280
             +   L   P  A  +  +   G   T+ H A     +     L    +  L    +  G 
Sbjct:   148 VGTILERFPDLAREEAWVVEDGSQSTLLHHACDKGDFELTTILL-GLDQGLEEALNPNGL 206

Query:   281 TVLHLAVLRKNYQFVEYII-------------KETVLDIYCRNHKNQTALDII-EQAGTN 326
             + LHLAVLR +   +E  +             KETV  +  RN KN  A   + E  G N
Sbjct:   207 SPLHLAVLRGSVVILEEFLDKVPLSFSSITPSKETVFHLAARN-KNMDAFVFMAESLGIN 265

Query:   327 DDATSLKKLFKTAGNIG--SPELSPPAAEVKLTLESPINLVKVTSSSTSMDPSMNMHLSR 384
                  L++  ++   +   +  +S  A  ++  +    N+V +TS +     +  + L R
Sbjct:   266 SQIL-LQQTDESGNTVLHIAASVSFDAPLIRYIVGK--NIVDITSKNKMGFEAFQL-LPR 321

Query:   385 SWCSSPVRNIEPMLTKEL-LGNHTKQKPKGEEANSSEPESVEEANESPKSLE----RYKD 439
                    ++ E +L++ L  G  T Q+   E  N  + E  +E  E  + L        +
Sbjct:   322 E-----AQDFE-LLSRWLRFGTETSQELDSEN-NVEQHEGSQEV-EVIRLLRIIGINTSE 373

Query:   440 LSSRHMKELKQRYKSRQEKKNEVHREALQNARNTIILVAILIATVTYTGGISPPGGVYQE 499
             ++ R   + ++  + RQ  + ++H EALQNARNTI +VA+LIA+V Y GGI+PPGGVYQ+
Sbjct:   374 IAERKRSKEQEVERGRQNLEYQMHIEALQNARNTIAIVAVLIASVAYAGGINPPGGVYQD 433

Query:   500 GPLKGKSLVGRTKAFKIFEISNNIALFTXXXXXXXXXXXXPFERKKLMRLLVITHKVMWV 559
             GP +GKSLVG+T AFK+F I NNIALFT            P++RK L RLLV TH++MWV
Sbjct:   434 GPWRGKSLVGKTTAFKVFAICNNIALFTSLGIVILLVSIIPYKRKPLKRLLVATHRMMWV 493

Query:   560 SISFMATAYIAATRITVPDDRGTGWVTDSXXXXXXXXXXXXXXXXXVELIRHRLRKL 616
             S+ FMATAYIAA+ +T+P   GT W+  +                 VE I H  +K+
Sbjct:   494 SVGFMATAYIAASWVTIPHYHGTQWLFPAIVAVAGGALTVLFFYLGVETIGHWFKKM 550

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 172/620 (27%), Positives = 275/620 (44%)

Query:    77 PLHEACCQGNHEVSAFLMEANPTVATKLNHE---SQSAFSLACRQGHLDVVKLLINQSWL 133
             P+ +A  Q +      L+EA  +   + + E   + +   +A + GH ++V  +I     
Sbjct:     3 PIFDAILQNDLPAFLGLVEARESSLEERSEEQNTNNTVLHVAAKLGHRELVAKIIELRPS 62

Query:   134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPR-FAGKTDKNGFSPLHYASSIGNVNMT 192
             +    ++   TP++LA   G  +I  ++L+     ++ + +KN  +PLH A         
Sbjct:    63 LLSSRNAYGDTPLHLAALLGDVNIVMQMLDTGLELYSARNNKNQ-TPLHLA-------FV 114

Query:   193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTY----GE--T 246
              + +   K +  + N      L+ A  +G   I+   L   P    R   +    G   T
Sbjct:   115 SIFMEAAKFIVEKTNSVDLDELNFALSSGSTCIVGIILERFP-ELARKNAWEVEDGSRST 173

Query:   247 VFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDI 306
             + H A           L    N  L    +  G + LHLAV R +   +E  + ++ L  
Sbjct:   174 LLHYACDKGDLELTSILL-GLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSF 232

Query:   307 YCRNHKNQTALDIIEQAGTNDDA---------TSLKKLFKTAGNIGSPELSPPAAEVKLT 357
               R    +T   +  +   N DA         TS   L K     G+  L   A+   ++
Sbjct:   233 CVRTPSKETVFHLAAR-NKNTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIAAS---VS 288

Query:   358 LESPINLVKVTSSSTSMDPSMNMHLSRSWCSSP--VRNIEPMLTKELLGNHTKQKPKGEE 415
               SP+    V      +    NM   R++   P   ++ E + +       T ++   ++
Sbjct:   289 CGSPLIRYIVGKKIIDIRDRNNMGY-RAYHLLPRQAQDYEFISSYLRCDTKTSEEVDSKK 347

Query:   416 ANSSEPE-SVEEANESPKSLE-RYKDLSSRHMKELKQRYKSRQEK--KNEVHREALQNAR 471
             A  +EP     E     K +E    +++ R  K+ K+ +  R  K  ++E+H EALQNAR
Sbjct:   348 AERNEPHIGHSEVIRLLKLIEISTSEIAER--KKSKKHHVKRGHKSLEHEMHIEALQNAR 405

Query:   472 NTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTKAFKIFEISNNIALFTXXXX 531
             NTI +VA+LIA+V+Y GGI+PPGGVYQ+GP KGKSLVG T AFK+F I NNIALFT    
Sbjct:   406 NTIAIVAVLIASVSYAGGINPPGGVYQDGPWKGKSLVGNTAAFKVFAICNNIALFTSLCI 465

Query:   532 XXXXXXXXPFERKKLMRLLVITHKVMWVSISFMATAYIAATRITVPDDRGTGWVTDSXXX 591
                     P++RK L +LLV TH++MWVS+ FMATAY+AA+ +T+P   GT W+      
Sbjct:   466 VILLVSIIPYQRKPLKKLLVATHRMMWVSVGFMATAYVAASLVTIPHFPGTRWLFPVIIS 525

Query:   592 XXXXXXXXXXXXXXVELIRHRLRKLEWRAKKLGKQSKVGVIRG-RIQSHYTKFKPKNK-P 649
                           VE I H  +K+     ++G+   +  I+  R++      K + + P
Sbjct:   526 VAGGSLTVLFSYLGVETISHWFKKMN----RVGRGLPIYFIKNNRVEDIPAIAKNEGEMP 581

Query:   650 QXXXXXXXXXXXXXXGYHAY 669
                            GY  Y
Sbjct:   582 SLARTNSDLAASEGSGYFTY 601

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 69/149 (46%), Positives = 94/149 (63%)

Query:   439 DLSSRHMKELKQRYKSRQEKKNEV-HREALQNARNTIILVAILIATVTYTGGISPPGGVY 497
             D    +   +  ++     K+  V H EALQNARNTI +VAILIA+VT+  G++PPGG+Y
Sbjct:   181 DKDDANFPSIALKFGGESHKEESVMHSEALQNARNTITVVAILIASVTFAVGMNPPGGIY 240

Query:   498 QEGPL-KGKSLVGRTKAFKIFEISNNIALFTXXXXXXXXXXXXPFERKKLMRLLVITHKV 556
             QE    KGKS+  +T AFKIF +SN+IALFT            PF+ K L  +LVITHK+
Sbjct:   241 QESTSSKGKSVAAKTVAFKIFYVSNSIALFTSLWIVILLVSIIPFKPKSLKNVLVITHKM 300

Query:   557 MWVSISFMATAYIAATRITVPDDRGTGWV 585
             M VS++ +AT+Y+A   I +P   GT W+
Sbjct:   301 MSVSVAALATSYVAVGWIILPHFEGTKWL 329

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 128/380 (33%), Positives = 191/380 (50%)

Query:    32 ILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSA 91
             ++L  D   +T LH A    + E  T++  LCP LV+  N    TPLH A   GN  +  
Sbjct:    60 LVLDVDEEQSTLLHKAVTQRNEEYATKVIDLCPSLVSVTNVDGNTPLHLAAEIGNINILW 119

Query:    92 FLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAIS 151
              ++E       K+N + Q+AF LAC   +++  ++L+  +  M   E       +  A S
Sbjct:   120 KMLETGEAECMKINKQGQTAFILACLNNNVNSARILVEGTSSMTMVE-------LNAAFS 172

Query:   152 RGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKD 209
                  I   ILE  P      D+   + LH A   GN+ M + LL+   N+++A + +KD
Sbjct:   173 EQQQVIIDSILEKFPNLILDADEEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKVDKD 232

Query:   210 GYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYG--ETVFHLAVRFDKYNAFKFLAESF 267
             G TPLH A ING V+IL  FL  +P+SF+ +TT G  ETVFHLA ++ K  AF F+A+S 
Sbjct:   233 GLTPLHRAVINGSVEILKEFLCKAPSSFN-ITTQGTIETVFHLAAKYQKTKAFIFMAQSA 291

Query:   268 NTC-LFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTN 326
             N   L +  D   NTVLH+A    +   V +I+ ET +D+  +N K   A+D+I++ G +
Sbjct:   292 NIRQLLYSLDAEDNTVLHVAASVDSTSLVRHILSETTIDVTLKNKKGFAAVDLIDKEGVD 351

Query:   327 DDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTSMDP-SMNMHLSRS 385
                 SL   F+        ++  PA  VK   E P+ L++ T++   +   S  M L R 
Sbjct:   352 FPLLSL--WFRDEAE----KIQRPARYVKFAHE-PVELIRNTNNGEKLSSESRAMDLLRE 404

Query:   386 WCSSPVRNIEPMLTKELLGN 405
                 P RN E  +  E L N
Sbjct:   405 G-RDP-RNKEREMHSESLQN 422

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 2.9e-25, Sum P(2) = 2.9e-25
 Identities = 81/266 (30%), Positives = 133/266 (50%)

Query:   119 GHLDVVKLLINQS-WLME-FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
             G++D +  LI++  ++++  +      TP++ A S G TD+A E++ ++P FA K + +G
Sbjct:    12 GNVDALYALIHKDPYILQNIDVLPFVHTPLHEASSTGKTDLAMELMVLKPTFAKKLNSDG 71

Query:   177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
              SPLH A     V +   L+  N DL L   + G TPLHL    G   +L  FL + P S
Sbjct:    72 VSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKGDANLLTEFLLACPES 131

Query:   237 FDRLTTYGETVFHLAVRFDKYNAFKFL-----------AESFNTCLFHGQDQFGNTVLHL 285
                    GET  H+AV  D+Y   K L           A S    + + +D+ GNT+LHL
Sbjct:   132 IKDTNVNGETALHIAVMNDRYEELKVLTGWIHRLHKSDAASTEIHVLNKRDRDGNTILHL 191

Query:   286 AVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSP 345
             A  + N++  + ++K   L+   +N    TALDI+   G++ +  + +K+ + +G     
Sbjct:   192 AAYKNNHKAFKELLKCISLNRDIQNKGGMTALDILRTNGSHMNIKT-EKIIRHSGGKSGV 250

Query:   346 ELSPPAAEVKLTLESPINLVKVTSSS 371
              LS       + L SPI  V+  S++
Sbjct:   251 SLSK-VKTASVFLRSPITFVEYCSTT 275

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 5.4e-25, Sum P(2) = 5.4e-25
 Identities = 90/325 (27%), Positives = 147/325 (45%)

Query:    42 TALHLAARFGHVELVTEITKLCPE------LVAAENEKLETPLHEACCQGNH-EVSAFLM 94
             T LH+AAR G + +V  + +   E       +AA+++  +T LH A  +G H EV+  L+
Sbjct:   108 TTLHVAARAGSLNIVEILVRFITESSSYDAFIAAKSKNGDTALH-AALKGKHVEVAFCLV 166

Query:    95 EANPTVATKLNHESQSAFSLACRQGHLDVV-KLLINQSWLMEFEEDSVESTPIYLAISRG 153
                  V+   N++  S   +A   G+ ++V K+L + S            + I+ A+   
Sbjct:   167 SVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLESSSSPSILASMFSGKSVIHAAMKAN 226

Query:   154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA--LQY--NKD 209
               DI   +L   P      ++ G + L Y +S+G     + +L      A  L Y  + D
Sbjct:   227 RRDILGIVLRQDPGLIELRNEEGRTCLSYGASMGCYEGIRYILAEFDKAASSLCYVADDD 286

Query:   210 GYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE-SFN 268
             G+TP+H+AA  G V+I+  FL   P S + L    + +FH+A    K    K+L +    
Sbjct:   287 GFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDEG 346

Query:   269 TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDD 328
               + + QD  GNT LHLA   +    V  +     +++   N++  TALDI E    N+ 
Sbjct:   347 KRMMNEQDINGNTPLHLATKHRYPIVVNMLTWNDGINLRALNNEGFTALDIAETMKDNNA 406

Query:   329 ATSLKKLF----KTAGNIGSPELSP 349
                 K+L      +AG    P L P
Sbjct:   407 YVLYKRLIWMALVSAGAPHGPNLIP 431

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 91/344 (26%), Positives = 162/344 (47%)

Query:    41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
             +T LHLAA+ G +  V +I K   ++    N ++E  L         E  A + E   ++
Sbjct:    75 DTELHLAAQRGDLAAVQQILK---DI----NSQMEGIL------SGEEFDAEVAEIRASI 121

Query:   101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES-TPIYLAISRGHTDIAR 159
               ++N   ++A   A  +GHLDVVK L+  S      + +     P+++A  +GH  I  
Sbjct:   122 VNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVE 181

Query:   160 EILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAI 219
              +L+     +     +  +PL  A+  G+  +   LL+   +L      +    LHLAA 
Sbjct:   182 VLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAAR 241

Query:   220 NGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFG 279
              G V+++ A LS  P    R+   G+T  H+AV+       K L ++ +  +    D+  
Sbjct:   242 QGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDA-DPAIVMQPDKSC 300

Query:   280 NTVLHLAVLRKNYQFVEYIIK--ETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFK 337
             NT LH+A  +K  + VE ++   +T  +   R+HK  TALDI E    +++++ +K+   
Sbjct:   301 NTALHVATRKKRAEIVELLLSLPDTNANTLTRDHK--TALDIAEGLPLSEESSYIKECLA 358

Query:   338 TAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTSMDPSMNMH 381
              +G + + EL+ P  E++ T+    N V +    T    + N+H
Sbjct:   359 RSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRT-NKNVH 401

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 72/274 (26%), Positives = 131/274 (47%)

Query:   114 LACRQGHLDVVKLLINQS-WLMEFEEDSVE--STPIYLAISRGHTDIAREILEVRPRFAG 170
             +A + G +D +   I+++ +++E   D++   +TP+++A + G+   A E++ ++P FA 
Sbjct:     7 VATQIGSIDELYAHIHENPYILEII-DAIPFINTPLHIASASGNLSFAMELMNLKPSFAR 65

Query:   171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
             K +  G SPLH A   G   +   LL  + DL     ++G TP H     G   ++  FL
Sbjct:    66 KLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRRGETDLMTEFL 125

Query:   231 SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL-----------AESFNTCLFHGQDQFG 279
              + P         GET  H+AV  D+Y   + L           AES      + +DQ G
Sbjct:   126 LACPGCIKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLEMQFLNKRDQDG 185

Query:   280 NTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTA 339
             NT LH+A  +  ++ V+ ++K + ++    N    TALDI+     +   ++++ + +  
Sbjct:   186 NTALHIAAYQNRFKAVKILVKCSAVNRNIHNRTGLTALDILHNQRDHHANSNIENIIRKW 245

Query:   340 GNIGSPELSPPAAEVKLTLESPINLVKVTSSSTS 373
             G      L P + +V   L SPI+  +   + T+
Sbjct:   246 GGKSGNSL-PKSKKVSEILRSPISFTEHLFTQTA 278

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.338.1 hypothetical protein (534 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	669
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	4e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-04
smart00248	30	smart00248, ANK, ankyrin repeats	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-04
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.004

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  123 bits (312), Expect = 2e-33
 Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 4/112 (3%)

Query: 464 REALQNARNTIILVAILIATVTYTGGISPPGGVYQE--GPLKGKS-LVGRTKAFKIFEIS 520
            E L+  RN++++VA LIATVT+  G +PPGG +Q+  G   G   L G+ + FK F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 521 NNIALFTSLSIVIILVSIIPFERKKLMRLLVITHKVMWVSISFMATAYIAAT 572
           N IA   SL  VI+L+ I+P   ++L RLL     ++W+S+  +  A+ A +
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRLPRLL-ALLTLLWLSLLSLMVAFAAGS 111

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  105 bits (263), Expect = 9e-27
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 14/133 (10%)

Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
            D++G +PLH A+S G++ + KLLL +  D+  + + DG TPLHLAA NG ++I V  L 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEI-VKLLL 60

Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLA 286
              A  +     G T  HLA R    +  K L       L HG     +D+ G T LHLA
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLL-------LKHGADVNARDKDGRTPLHLA 113

Query: 287 VLRKNYQFVEYII 299
               + + V+ ++
Sbjct: 114 AKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (250), Expect = 5e-25
 Identities = 48/126 (38%), Positives = 76/126 (60%), Gaps = 3/126 (2%)

Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
           + + ++   LA   GHL+VVKLL+     +   +D+   TP++LA   GH +I + +LE 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLE- 61

Query: 165 RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
           +       DK+G +PLH A+  GN+++ KLLL H  D+  + +KDG TPLHLAA NG ++
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLE 120

Query: 225 ILVAFL 230
           ++   L
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 82.4 bits (204), Expect = 9e-19
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 3/128 (2%)

Query: 35  QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
            RD    T LHLAA  GH+E+V  + +   + V A++    TPLH A   G+ E+   L+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 95  EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
           E    V    + +  +   LA R G+LDVVKLL+     +    D    TP++LA   GH
Sbjct: 61  EKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGH 118

Query: 155 TDIAREIL 162
            ++ + +L
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.0 bits (172), Expect = 6e-15
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 146 IYLAISRGHTDIAREILEVRPRF-AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
           ++LA   G+ ++ + +LE       G TD    + LH A+  GN+ + KLLL H  D+  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 205 QYNKDGYTPLHLAAINGRVKIL 226
           + +KDG T LHLAA NG ++I+
Sbjct: 57  K-DKDGNTALHLAARNGNLEIV 77

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 112 FSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGK 171
             LA + G+L++VKLL+ +   +   +     T ++LA   G+ +I + +LE       K
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD---TDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQ 205
            DK+G + LH A+  GN+ + KLLL H  D+ L+
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 9/105 (8%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
           ++LL+  A +N       T LHLAA+ GH+E+V  + +   + V A ++   TPLH A  
Sbjct: 24  KLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAAR 82

Query: 84  QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI 128
            GN +V   L++    V    + + ++   LA + GHL+VVKLL+
Sbjct: 83  NGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 180 LHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDR 239
           LH A+  GN+ + KLLL    D+ L       T LHLAA NG ++I V  L    A  + 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEI-VKLLLEHGADVNA 56

Query: 240 LTTYGETVFHLAVRFDKYNAFKFLAE 265
               G T  HLA R       K L E
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 44  LHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATK 103
           LHLAA+ G++ELV  + +   ++   + +   T LH A   GN E+   L+E    V  K
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 104 LNHESQSAFSLACRQGHLDVVKLLINQ 130
            + +  +A  LA R G+L++VKLL+  
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 62.3 bits (151), Expect = 4e-10
 Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 27/243 (11%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCP 64
            +Q+L   I   D +A+  ++      I +  D +  T L  A R G  ++V    K   
Sbjct: 1   ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETT-TPLIDAIRSGDAKIVELFIKHGA 59

Query: 65  ELVAAENEKLETPLHEACCQGNHEVSAFLME-------------ANPTVATKL------- 104
           + +   N K+  PL  A   G H++   L++                 + T L       
Sbjct: 60  D-INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVN 118

Query: 105 --NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL 162
             + E ++    A ++G L+ +K+L      +  E+D+    PI++AI     DI + +L
Sbjct: 119 IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDN-GCYPIHIAIKHNFFDIIKLLL 177

Query: 163 EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR 222
           E +  +A   D NG SPLH A+  G+    KLL++H   +  +    G+TPLH A I+ R
Sbjct: 178 E-KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN-GFTPLHNAIIHNR 235

Query: 223 VKI 225
             I
Sbjct: 236 SAI 238

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 35/222 (15%)

Query: 17  DKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLET 76
                + L+   +      +  +L   L L       EL+ ++  +   L A + +    
Sbjct: 18  LLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL-IVDRHLAARDLDGR-L 75

Query: 77  PLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF 136
           PLH A  +G+ ++   L+ +   V  K + +  +   LA   G+                
Sbjct: 76  PLHSAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPP-------------- 120

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEV--RPRFAGKTDKNGFSPLHYASSIGNVNMTKL 194
                           G+ ++A+ +LE           D++G +PLH+A+  G+ ++ +L
Sbjct: 121 ---------------EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165

Query: 195 LLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
           LL    D     N  G T L  AA NGR++++   L      
Sbjct: 166 LLEAGADPN-SRNSYGVTALDPAAKNGRIELVKLLLDKGLHL 206

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 8/154 (5%)

Query: 149 AISRGHTDIAREILE--VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQY 206
           AI  G  DIAR +L+  + P F      +G SP+  A    +    KLL+ H     ++Y
Sbjct: 9   AILFGELDIARRLLDIGINPNF---EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY 65

Query: 207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
             D  + LH A   G VK +   L     + D     G T  HLA    K +  K L   
Sbjct: 66  -PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR 124

Query: 267 FNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
                    D+F  + LHLAV+  + + +E +I 
Sbjct: 125 GADPDIPNTDKF--SPLHLAVMMGDIKGIELLID 156

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 57.1 bits (137), Expect = 4e-09
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 139 DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYAS-----SIGNVNMTK 193
           D     P++ A S+G   I + +L        K D +G +PLH A+       GN+ + K
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAK 128

Query: 194 LLLNHN--KDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA 251
           LLL      D+    ++DG TPLH AA+NG   I+   L +      R  +YG T    A
Sbjct: 129 LLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR-NSYGVTALDPA 187

Query: 252 VRFDKYNAFKFLAES 266
            +  +    K L + 
Sbjct: 188 AKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 15/97 (15%)

Query: 9   LSEAIVRNDKQALINLVGCSNKRILLQRDASLN-----TALHLAARFGHVELVTEITKLC 63
           L  A    + + +         ++LL++ A +N     TALHLAAR G++E+V  + +  
Sbjct: 1   LHLAAKNGNLELV---------KLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHG 51

Query: 64  PELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
            ++ A + +   T LH A   GN E+   L+E    +
Sbjct: 52  ADVNAKDKDG-NTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 50/243 (20%), Positives = 99/243 (40%), Gaps = 42/243 (17%)

Query: 122 DVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT-----DIAREILEVRPRFAGKTDKNG 176
           DVVK+L++             STP++   +  +      +I + +LE         D NG
Sbjct: 49  DVVKILLDNG-ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNG 106

Query: 177 FSPLHYASS--IGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKI-LVAFLSSS 233
            +PL YA S    + ++ + LL++  ++ ++ N DG   LHL   + ++ + ++  L   
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIK-NSDGENLLHLYLESNKIDLKILKLLIDK 165

Query: 234 PA------SFDRLTTY----------GETVFHLAVRFDKYNAFKFLAE---SFNTCLFHG 274
                     + L +Y          G T  H AV  +     K+L +   + N      
Sbjct: 166 GVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV---- 221

Query: 275 QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKK 334
            +++G+T LH+A+L  N    + I K  + +        +T   ++     + +  +  K
Sbjct: 222 -NKYGDTPLHIAILNNN----KEIFKLLLNNGPSIKTIIET---LLYFKDKDLNTITKIK 273

Query: 335 LFK 337
           + K
Sbjct: 274 MLK 276

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 53.7 bits (128), Expect = 7e-08
 Identities = 58/230 (25%), Positives = 87/230 (37%), Gaps = 36/230 (15%)

Query: 110 SAFSLACRQGHLDVVKLLI-NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRF 168
           SA  L  +     ++  L+   S  +    D   +  + LA+    +     +  +  R 
Sbjct: 6   SALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRH 65

Query: 169 AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA 228
               D +G  PLH A+S G+  + KLLL    D+  + + DG TPLHLAA+NG       
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGN- 123

Query: 229 FLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF-NTCLFHGQDQFGNTVLHLAV 287
                                           K L E+  +  + + +D+ GNT LH A 
Sbjct: 124 ----------------------------IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 288 LRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFK 337
           L  +   VE ++ E   D   RN    TALD    A  N     +K L  
Sbjct: 156 LNGDADIVELLL-EAGADPNSRNSYGVTALDP---AAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
           G + LH A+  G + + K LL    D+    ++DG T LH+AA NG +++L   L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 110 SAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFA 169
           S   LA +    + +KLL+    + + +   +ES  ++ A+  G      E+L++     
Sbjct: 37  SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAVEELLDLGKFAD 95

Query: 170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAF 229
               K+G +PLH A+ +  +++ KLL+    D  +  N D ++PLHLA + G +K  +  
Sbjct: 96  DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIK-GIEL 153

Query: 230 LSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
           L    A  D     G T   +A+        K L +S
Sbjct: 154 LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           +LE  P     TD NG +PLH A+  G + + + LL    DL L+ + DG T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLR-DSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 210 GYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
           G T LH AAI+GR++ LV +L       +R    G T  H+A         K L
Sbjct: 1   GRTALHKAAISGRLE-LVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.7 bits (109), Expect = 9e-07
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL 196
             T ++ A   G  ++ + +LE       +TD++G + LH A+  GN+ + KLLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDIN-RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 195 LLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA 251
           LL H        + +G TPLHLAA  G ++++   L       +   + G T   LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 24/179 (13%)

Query: 143 STPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG-----NVNMTKLLLN 197
             P+YLA    + D+ + +L+        T  N  +PLHY S+I         + KLLL 
Sbjct: 36  VLPLYLAKEARNIDVVKILLDNGADINSSTKNN-STPLHYLSNIKYNLTDVKEIVKLLLE 94

Query: 198 HNKDLALQYNKDGYTPLHLAAINGRVKI-LVAFLSSSPASFDRLTTYGETVFHLAVR--F 254
           +  ++    N  G TPL  A         +V +L  + A+ +   + GE + HL +    
Sbjct: 95  YGANVNAPDNN-GITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNK 153

Query: 255 DKYNAFKFLAE---------SFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYII 299
                 K L +           N  L +G     +D +G T LH AV   N +FV+Y++
Sbjct: 154 IDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL 212

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 9/175 (5%)

Query: 29  NKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN-- 86
             R L  RD      LH AA  G  ++V  +     + V A++   +TPLH A   GN  
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPP 120

Query: 87  ---HEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSV 141
               EV+  L+E  A+  V    + +  +    A   G  D+V+LL+             
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYG 180

Query: 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL 196
             T +  A   G  ++ + +L+     +              S    +N+T L++
Sbjct: 181 V-TALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLII 234

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 273 HGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
           +  D  GNT LHLA      + V++++K  V D+  R+    TALD+
Sbjct: 10  NATDGNGNTPLHLAAKYGALELVQWLLKPGV-DLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 44/156 (28%)

Query: 168 FAGKTDKNGFSPLHYASSIGNV----NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV 223
           FA + D  G + LHY    G V         + + N+ L L+YN+ G   +H+ +   + 
Sbjct: 9   FASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKA 68

Query: 224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE---SFNTCLFHGQDQ-FG 279
                                          D     K L E     N     G+++ FG
Sbjct: 69  -------------------------------DPQEKLKLLMEWGADIN-----GKERVFG 92

Query: 280 NTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT 315
           NT LH+AV  +NY+   ++  +  +++   N+  +T
Sbjct: 93  NTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT 128

Length = 154

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 43/194 (22%)

Query: 42  TALHLAARFGHVELVTEITKLCPELVAAENEK---LETPLHEACCQGNHEVSAFLMEANP 98
           + + LA +F   E +    KL  +  A  + K   +E+ LH+A  +G+ +    L++   
Sbjct: 37  SPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK 92

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIA 158
                   +  +   LA     LD++KLLI +                         DI 
Sbjct: 93  FADDVFYKDGMTPLHLATILKKLDIMKLLIAR---------------------GADPDIP 131

Query: 159 REILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAA 218
                        TDK  FSPLH A  +G++   +LL++H   L ++ +  G TPL +A 
Sbjct: 132 ------------NTDK--FSPLHLAVMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAM 176

Query: 219 INGRVKILVAFLSS 232
             G + I    L S
Sbjct: 177 AKGDIAICKMLLDS 190

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 15/156 (9%)

Query: 171 KTDKNGFSPLH-YASSIG-NVNMTKLLLNHNKDL-ALQYNKDGYTPLHLAAINGRVKI-L 226
             DK G +PLH Y S    N  + +LLL    D+ AL  +  G TPL +   +    + L
Sbjct: 112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL--DLYGMTPLAVLLKSRNANVEL 169

Query: 227 VAFLSSSPASFDRLTT--YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLH 284
           +  L    A  D         ++ H  ++  K  A          C     D  GNT LH
Sbjct: 170 LRLLID--AGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLH 227

Query: 285 LAVLR---KNYQFVEYIIKETVLDIYCRNHKNQTAL 317
                   K    +  +I    ++   RN   QT L
Sbjct: 228 SMATGSSCKRSLVLPLLIAGISINA--RNRYGQTPL 261

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 178 SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASF 237
           S LH A   G+V   + LL+  K     + KDG TPLHLA I  ++ I+   ++   A  
Sbjct: 70  SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG-ADP 128

Query: 238 DRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN 291
           D   T   +  HLAV        + L +    CL   +D  G T L +A+ + +
Sbjct: 129 DIPNTDKFSPLHLAVMMGDIKGIELLIDH-KACL-DIEDCCGCTPLIIAMAKGD 180

Length = 413

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 275 QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKK 334
           +D+ G T LHLA    + + V+ +++    D+  +++  +T L +   A  N     +K 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGA-DVNAKDNDGRTPLHL---AAKNGHLEIVKL 58

Query: 335 LFKTAGNI 342
           L +   ++
Sbjct: 59  LLEKGADV 66

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
           D +G +PLH A + G+V + ++LL    D  L  +KDG TPL LA  NG  +++      
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGKTPLELAEENGFREVVQLLSRH 170

Query: 233 SPASFD 238
           S   F+
Sbjct: 171 SQCHFE 176

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDL 202
           +G +PLH A+  G++ + KLLL    D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 143 STPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYA 183
           +TP++LA   G  ++ + +L+         D +G + L  A
Sbjct: 17  NTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
            ++ G +PLHYA+   N    + L+    D+    + DG TPL L   N   + + A L+
Sbjct: 253 RNRYGQTPLHYAAVFNNPRACRRLIALGADINA-VSSDGNTPLSLMVRNNNGRAVRAALA 311

Query: 232 SSP------ASFDRLTTYGE 245
            +P      A+ +  +  G 
Sbjct: 312 KNPSAETVAATLNTASVAGG 331

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDL 202
           +G +PLH A+  GN+ + KLLL+   D+
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 246 TVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299
           T  H A    +    K+L E       +  D+ GNT LH+A    N + ++ ++
Sbjct: 3   TALHKAAISGRLELVKYLLEKGV--DINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.8 bits (98), Expect = 9e-04
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 139 DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYA-SSIGNVNMTKLLLN 197
           D   ++P++ A+   +  I   +LE       + DK G +PLH +     + ++ KLLL 
Sbjct: 198 DKTNNSPLHHAVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLE 256

Query: 198 HNKDLALQYNKDGYTPLHLAAINGRV-KILVAFLSSSPASFDRLTTYGETVFHLAVR-FD 255
           H  D+  +    G T LH +  + R  K+L+ +     A  + L +Y  T    AV+ + 
Sbjct: 257 HGVDVNAKSYILGLTALHSSIKSERKLKLLLEY----GADINSLNSYKLTPLSSAVKQYL 312

Query: 256 KYNAFKFLAESFNTCL 271
             N  + L    N CL
Sbjct: 313 CINIGRILI--SNICL 326

Length = 477

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 14/143 (9%)

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
           A K +    SA   A    ++ +V  L+N   L    E+     P++ A +   T I + 
Sbjct: 23  AFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEF---PLHQAATLEDTKIVKI 79

Query: 161 ILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGY-TPLH 215
           +L     F+G    + D  G + L+YA   GN+   KL +  N  L   Y K G+ T  +
Sbjct: 80  LL-----FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFY 133

Query: 216 LAAINGRVKILVAFLSSSPASFD 238
            A +   V I+  FLS  P++FD
Sbjct: 134 HAVMLNDVSIVSYFLSEIPSTFD 156

Length = 284

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 17/229 (7%)

Query: 77  PLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF 136
           PLH+A    N +V   L+     V  + +H   +   + C++ +   +K +I        
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIR-----SI 93

Query: 137 EEDSVESTPIYLAISRG----HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT 192
            + SV  T   +AI       + +I + IL  R +     D            I    +T
Sbjct: 94  NKCSVFYT--LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDII-EAEIT 150

Query: 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
           KLLL++  D+ ++    G T LH A  N   + L   L S  A+ +       +  H AV
Sbjct: 151 KLLLSYGADINMKDRHKGNTALHYATENKDQR-LTELLLSYGANVNIPDKTNNSPLHHAV 209

Query: 253 RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLR-KNYQFVEYIIK 300
           +         L E  N      +D+ GNT LH++V   K+Y  ++ +++
Sbjct: 210 KHYNKPIVHILLE--NGASTDARDKCGNTPLHISVGYCKDYDILKLLLE 256

Length = 477

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 40/154 (25%)

Query: 171 KTDKNGFSPLHYASSIG-NVN--MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILV 227
           KT  N  S LH+  S   NV   + K+L++    +  + ++DG   LH+   N  V+I  
Sbjct: 82  KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRI-- 138

Query: 228 AFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAV 287
                                         N  K L +S  +  F  +D   N +L+  +
Sbjct: 139 ------------------------------NVIKLLIDSGVS--FLNKDFDNNNILYSYI 166

Query: 288 L-RKNYQFVEYIIKETVLDIYCRNHKNQTALDII 320
           L   + +  +++    + DI   N       D+I
Sbjct: 167 LFHSDKKIFDFLTSLGI-DINETNKSGYNCYDLI 199

Length = 209

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 59/257 (22%), Positives = 88/257 (34%), Gaps = 51/257 (19%)

Query: 72  EKLETPLHEACCQGNHEVSA----FLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
           E  +TPLH      + E        L+EA   V                    LDV+KLL
Sbjct: 45  EYGKTPLH-LYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLL 103

Query: 128 I------NQSWLMEFEEDSVESTP--IYLAISRGHTDIAREILE--VRPRFAGKTDKNGF 177
           I      N        +D V  TP  +YL+    +  + R +L            D  G 
Sbjct: 104 IKAGADVN-------AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN---ALDLYGM 153

Query: 178 SPLH-YASSIG-NVNMTKLLLNHNKDLALQYNKD--GYTPLHLAAINGR-----VKILVA 228
           +PL     S   NV + +LL++   D+   Y  D    + LH    + +     V+ L+ 
Sbjct: 154 TPLAVLLKSRNANVELLRLLIDAGADV---YAVDDRFRSLLHHHLQSFKPRARIVRELIR 210

Query: 229 FLSSSPASFDRLTTYGETVFHLAVRFDKYNA---FKFLAE--SFNTCLFHGQDQFGNTVL 283
                PA+ D L   G T  H                L    S N      ++++G T L
Sbjct: 211 -AGCDPAATDML---GNTPLHSMATGSSCKRSLVLPLLIAGISINA-----RNRYGQTPL 261

Query: 284 HLAVLRKNYQFVEYIIK 300
           H A +  N +    +I 
Sbjct: 262 HYAAVFNNPRACRRLIA 278

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 71/294 (24%), Positives = 115/294 (39%), Gaps = 29/294 (9%)

Query: 67  VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
           V A++    TP+H A  +GN ++   L+     V   +  +  S    A    ++D +K 
Sbjct: 171 VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNI-IALDDLSVLECAVDSKNIDTIKA 229

Query: 127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFA-GKTDKNGFSPLHYASS 185
           +I+          ++    + L  +  + D+   +L     F+    D    +PLH+AS 
Sbjct: 230 IIDN-------RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQ 282

Query: 186 IGNVN-MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYG 244
             +++ +   LL    D+  + N  G TPL+L A NG     +  L    A  +      
Sbjct: 283 APSLSRLVPKLLERGADVNAK-NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY 341

Query: 245 ETVFHLAVRFDKYN--AFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            T  H A   D+        L    N    + +D    T +H A +R N      +I  T
Sbjct: 342 ITPLHQASTLDRNKDIVITLLELGANV---NARDYCDKTPIHYAAVRNN-----VVIINT 393

Query: 303 VLD----IYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGS--PELSPP 350
           +LD    I   + K  TAL      GTN    S+K L     N+ S   +LS P
Sbjct: 394 LLDYGADIEALSQKIGTALH-FALCGTN-PYMSVKTLIDRGANVNSKNKDLSTP 445

Length = 682

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 279 GNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
           G+T LHLA  R+++   E++  +  +D++  N  N++  ++
Sbjct: 98  GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL 138

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	669
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.98
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PF13962	113	PGG: Domain of unknown function	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.9
PHA02795	437	ankyrin-like protein; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PHA02795	437	ankyrin-like protein; Provisional	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.8
KOG0514	452	consensus Ankyrin repeat protein [General function	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
PHA02743	166	Viral ankyrin protein; Provisional	99.76
PHA02741	169	hypothetical protein; Provisional	99.75
PHA02741	169	hypothetical protein; Provisional	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.74
PHA02743	166	Viral ankyrin protein; Provisional	99.72
PHA02884	300	ankyrin repeat protein; Provisional	99.69
PHA02736	154	Viral ankyrin protein; Provisional	99.69
PHA02736	154	Viral ankyrin protein; Provisional	99.68
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.66
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.66
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.62
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.6
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.53
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.53
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.52
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.51
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.4
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.38
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.35
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.34
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.27
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.24
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.23
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.16
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.14
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.08
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.07
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.07
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.05
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.9
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.48
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.44
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.42
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.37
KOG0522	560	consensus Ankyrin repeat protein [General function	98.35
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.35
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.34
PF13606	30	Ank_3: Ankyrin repeat	98.33
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.32
PF13606	30	Ank_3: Ankyrin repeat	98.3
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.22
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.17
KOG0522	560	consensus Ankyrin repeat protein [General function	98.15
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.07
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.97
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.84
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.77
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.64
KOG0511	516	consensus Ankyrin repeat protein [General function	97.55
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.54
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.43
KOG2384	223	consensus Major histocompatibility complex protein	97.43
KOG0511	516	consensus Ankyrin repeat protein [General function	97.42
KOG2384	223	consensus Major histocompatibility complex protein	97.38
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.28
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.6
KOG2505	591	consensus Ankyrin repeat protein [General function	95.44
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.28
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	94.71
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.31
KOG2505	591	consensus Ankyrin repeat protein [General function	93.61
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.4
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	89.1
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	88.08
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.28
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	85.88
PF14126	149	DUF4293: Domain of unknown function (DUF4293)	85.74
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.24
KOG4193	610	consensus G protein-coupled receptors [Signal tran	84.51
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	83.19
COG2322	177	Predicted membrane protein [Function unknown]	82.77

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-39  Score=354.07  Aligned_cols=299  Identities=21%  Similarity=0.276  Sum_probs=267.4

Q ss_pred             cCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHc
Q 005931            5 MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ   84 (669)
Q Consensus         5 m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~   84 (669)
                      |+..|+.|+..||++.++.+++ ..+..++..+..|.||||.|+..|+.++|++|++.|++ ++..+..|.||||.|+..
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~-~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~   78 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIK-NKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKI   78 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHH-cCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHc
Confidence            4567999999999999999998 55566777888999999999999999999999999998 788899999999999999


Q ss_pred             CCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 005931           85 GNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV  164 (669)
Q Consensus        85 g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~  164 (669)
                      |+.+++++|+++|++...           .+....+.++++.|++.+.+.+ ..+..|.||||.|+..|+.+++++|++.
T Consensus        79 ~~~~iv~~Ll~~g~~~~~-----------~~~~~~~~~~i~~ll~~g~d~n-~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~  146 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSI-----------LPIPCIEKDMIKTILDCGIDVN-IKDAELKTFLHYAIKKGDLESIKMLFEY  146 (434)
T ss_pred             CCHHHHHHHHHCCCCCCc-----------chhccCCHHHHHHHHHCcCCCC-CCCCCCccHHHHHHHCCCHHHHHHHHhC
Confidence            999999999999877532           2334467899999999998876 5677799999999999999999999999


Q ss_pred             CCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 005931          165 RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYG  244 (669)
Q Consensus       165 ~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g  244 (669)
                      +.+. +..|.+|.||||+|+..|+.+++++|+++|++++.. +..|.||||.|+..|+.++++.|+..+ .+++..+..|
T Consensus       147 gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~-~~~g~tpL~~A~~~g~~~iv~~Ll~~g-~~i~~~~~~g  223 (434)
T PHA02874        147 GADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLLIDHG-NHIMNKCKNG  223 (434)
T ss_pred             CCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCC
Confidence            8875 678999999999999999999999999999998876 899999999999999999998888665 6788899999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHhcCcccccccCCCCCHHHHHHHc
Q 005931          245 ETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK-NYQFVEYIIKETVLDIYCRNHKNQTALDIIEQA  323 (669)
Q Consensus       245 ~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~-~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~  323 (669)
                      .||||.|+..+. +++++|+.   +..++.+|.+|+||||+|+..+ +.+++++|+ ..|+|++.+|..|.|||++|.+.
T Consensus       224 ~TpL~~A~~~~~-~~i~~Ll~---~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll-~~gad~n~~d~~g~TpL~~A~~~  298 (434)
T PHA02874        224 FTPLHNAIIHNR-SAIELLIN---NASINDQDIDGSTPLHHAINPPCDIDIIDILL-YHKADISIKDNKGENPIDTAFKY  298 (434)
T ss_pred             CCHHHHHHHCCh-HHHHHHHc---CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHh
Confidence            999999999876 56677764   5678999999999999999876 789999999 78899999999999999999987


Q ss_pred             CC
Q 005931          324 GT  325 (669)
Q Consensus       324 ~~  325 (669)
                      +.
T Consensus       299 ~~  300 (434)
T PHA02874        299 IN  300 (434)
T ss_pred             CC
Confidence            73

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.3e-39  Score=339.54  Aligned_cols=305  Identities=26%  Similarity=0.350  Sum_probs=207.2

Q ss_pred             CHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC
Q 005931            6 AQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG   85 (669)
Q Consensus         6 ~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g   85 (669)
                      +.+|+.|+..+.++.++.+++ . +....-++.++.+|||+|+..|+.++++.|++.+.+ ++..|..|.||||.||..+
T Consensus        89 n~~l~~a~~~~~~~~i~~Lls-~-gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh~A~~~~  165 (929)
T KOG0510|consen   89 NTPLHAAVEYNQGDKIQVLLS-Y-GADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLHLAARKN  165 (929)
T ss_pred             CchhHHHhhcchHHHHHHHHh-c-CCCCChhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccCCCchhhHHHhcC
Confidence            344677777777777777776 2 244555667777777777777777777777777755 6777777777777777777


Q ss_pred             CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcC-----CCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 005931           86 NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ-----SWLMEFEEDSVESTPIYLAISRGHTDIARE  160 (669)
Q Consensus        86 ~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~-----~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~  160 (669)
                      +.|..+.|++.|++.... |.+|..|+|.|+++|..|+.+..+.+     ....+ ..+..+.+|||.|+..|+.++++.
T Consensus       166 ~~E~~k~Li~~~a~~~K~-~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-~~~n~~~~pLhlAve~g~~e~lk~  243 (929)
T KOG0510|consen  166 KVEAKKELINKGADPCKS-DIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN-FDNNEKATPLHLAVEGGDIEMLKM  243 (929)
T ss_pred             hHHHHHHHHhcCCCCCcc-cCcCCchHHHHHHhcchhhhhhhhccccchhhcccc-cccCCCCcchhhhhhcCCHHHHHH
Confidence            777667777777765443 67777777777777777777777752     22222 234446677777777777777777


Q ss_pred             HHhcCCcc--------------cCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHH
Q 005931          161 ILEVRPRF--------------AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL  226 (669)
Q Consensus       161 Ll~~~~~~--------------~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v  226 (669)
                      +|+.+...              .+..|.+|+||||+||+.|+.++++.|+..|++++.+ +.++.||||.||..|+.+.+
T Consensus       244 ~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k-n~d~~spLH~AA~yg~~ntv  322 (929)
T KOG0510|consen  244 CLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK-NKDEESPLHFAAIYGRINTV  322 (929)
T ss_pred             HHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc-CCCCCCchHHHHHcccHHHH
Confidence            77655432              2344667777777777777777777777777777765 67777777777777777777


Q ss_pred             HHHHh-cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc---cCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931          227 VAFLS-SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFH---GQDQFGNTVLHLAVLRKNYQFVEYIIKET  302 (669)
Q Consensus       227 ~~LL~-~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in---~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~  302 (669)
                      +.||+ ......+..|..|.||||+|++.|+.+++++|++++.  +.+   ..|.+|+||||+|+..|+..+|++|+ ..
T Consensus       323 ~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA--~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li-~~  399 (929)
T KOG0510|consen  323 ERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGA--LFLNMSEADSDGNTALHLAAKYGNTSAVQKLI-SH  399 (929)
T ss_pred             HHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcCh--hhhcccccccCCchhhhHHHHhccHHHHHHHH-Hc
Confidence            77776 3344556666777777777777777777777777532  222   44777777777777777777777777 66


Q ss_pred             CcccccccCCCCCHHHH
Q 005931          303 VLDIYCRNHKNQTALDI  319 (669)
Q Consensus       303 ~~d~~~~n~~g~T~L~~  319 (669)
                      |+++..+|..|.+++|+
T Consensus       400 Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  400 GADIGVKNKKGKSAFDT  416 (929)
T ss_pred             CCceeeccccccccccc
Confidence            66777777777777765

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=374.50  Aligned_cols=330  Identities=18%  Similarity=0.206  Sum_probs=274.9

Q ss_pred             cCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHH------------------------------------
Q 005931            5 MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAA------------------------------------   48 (669)
Q Consensus         5 m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa------------------------------------   48 (669)
                      ++| ||+|+..|+.|.|+.+++ ..+......|..|.||||+|+                                    
T Consensus        42 ~t~-LH~A~~~g~~e~V~~ll~-~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  119 (682)
T PHA02876         42 FTA-IHQALQLRQIDIVEEIIQ-QNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDE  119 (682)
T ss_pred             chH-HHHHHHHHhhhHHHHHHH-hCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHH
Confidence            555 999999999999999999 667777888999999999666                                    


Q ss_pred             ----------------------------------HcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931           49 ----------------------------------RFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM   94 (669)
Q Consensus        49 ----------------------------------~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll   94 (669)
                                                        ..|+.+++++|++.|.+ ++.+|..|.||||+||..|+.++|++|+
T Consensus       120 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gad-vn~~d~~G~TpLh~Aa~~G~~~iv~~LL  198 (682)
T PHA02876        120 ACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGAD-VNAKDIYCITPIHYAAERGNAKMVNLLL  198 (682)
T ss_pred             HHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence                                              45778899999999988 7889999999999999999999999999


Q ss_pred             hhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccc----------------------------cccCCCCCcHH
Q 005931           95 EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME----------------------------FEEDSVESTPI  146 (669)
Q Consensus        95 ~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~----------------------------~~~~~~~~t~L  146 (669)
                      +.|++.... +..|.||||+|+..++.+++++|++.+....                            ...+..|.|||
T Consensus       199 ~~Gad~n~~-~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpL  277 (682)
T PHA02876        199 SYGADVNII-ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPL  277 (682)
T ss_pred             HCCCCcCcc-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            999987654 7889999999999999999888876543221                            13455688999


Q ss_pred             HHHHHcCCH-HHHHHHHhcCCcccCCCCCCCChHHHHHHhcC-CHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHH
Q 005931          147 YLAISRGHT-DIAREILEVRPRFAGKTDKNGFSPLHYASSIG-NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK  224 (669)
Q Consensus       147 ~~A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g-~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e  224 (669)
                      |+|+..++. ++++.|++.+.+. +..|.+|.||||+|+..| +.+++++|+..|++++.. |..|.||||+|+..+...
T Consensus       278 h~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~-d~~g~TpLh~A~~~~~~~  355 (682)
T PHA02876        278 HHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAA-DRLYITPLHQASTLDRNK  355 (682)
T ss_pred             HHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc-ccCCCcHHHHHHHhCCcH
Confidence            999999986 5888888887764 778889999999999998 589999999999999876 889999999999866544


Q ss_pred             HHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC-HHHHHHHHHhcC
Q 005931          225 ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN-YQFVEYIIKETV  303 (669)
Q Consensus       225 ~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~-~~iv~~Ll~~~~  303 (669)
                      .+..+|...+.+++.+|..|+||||+|+..++.+++++|++.  +.+++..+..|.||||+|+..++ ..++++|+ +.|
T Consensus       356 ~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~--gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll-~~g  432 (682)
T PHA02876        356 DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDY--GADIEALSQKIGTALHFALCGTNPYMSVKTLI-DRG  432 (682)
T ss_pred             HHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCccccCCCCCchHHHHHHcCCHHHHHHHHH-hCC
Confidence            445555667789999999999999999999999999999986  66788889999999999987765 46688888 778


Q ss_pred             cccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCCCCCC
Q 005931          304 LDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPE  346 (669)
Q Consensus       304 ~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~~~~  346 (669)
                      +|++.+|..|+||||+|+..+..   ..+.++|...|+..+..
T Consensus       433 adin~~d~~G~TpLh~Aa~~~~~---~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        433 ANVNSKNKDLSTPLHYACKKNCK---LDVIEMLLDNGADVNAI  472 (682)
T ss_pred             CCCCcCCCCCChHHHHHHHhCCc---HHHHHHHHHCCCCCCCC
Confidence            89999999999999999886532   23556666777665443

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.9e-39  Score=351.34  Aligned_cols=301  Identities=20%  Similarity=0.238  Sum_probs=253.4

Q ss_pred             HhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC--CHHHHH
Q 005931           14 VRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG--NHEVSA   91 (669)
Q Consensus        14 ~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g--~~eivk   91 (669)
                      ..++.+.++.|++ . +..++.+|..|.||||+||..|+.++|+.|++.|++ ++.+|..|.||||+|+..+  +.++++
T Consensus        48 ~~~~~~iv~~Ll~-~-Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~~~~~~~e~v~  124 (446)
T PHA02946         48 KGLDERFVEELLH-R-GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLSGTDDEVIERIN  124 (446)
T ss_pred             cCCCHHHHHHHHH-C-cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCchHHHHH
Confidence            4557788888887 3 356788899999999999999999999999999988 7889999999999998866  489999


Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCC--HHHHHHHHhcCCccc
Q 005931           92 FLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH--TDIAREILEVRPRFA  169 (669)
Q Consensus        92 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~--~~iv~~Ll~~~~~~~  169 (669)
                      +|+++|+++....+..|.|||| |+..++.+++++|++.+.+.+ ..+..|.||||.|+..++  .+++++|++.+.+. 
T Consensus       125 lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-  201 (446)
T PHA02946        125 LLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-  201 (446)
T ss_pred             HHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-
Confidence            9999999988767889999997 667799999999999988776 577789999999887554  68999999998875 


Q ss_pred             CCCCCCCChHHHHHHhcC--CHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH-HHHHHHHhcCCCC----------
Q 005931          170 GKTDKNGFSPLHYASSIG--NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV-KILVAFLSSSPAS----------  236 (669)
Q Consensus       170 ~~~d~~g~t~Lh~Aa~~g--~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~-e~v~~LL~~~~~~----------  236 (669)
                      +..|.+|.||||+|+..|  +.+++++|++ |++++.. |..|.||||+|+..++. ++++.|+..+...          
T Consensus       202 n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~-d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~  279 (446)
T PHA02946        202 SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQ-NKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIF  279 (446)
T ss_pred             cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHH
Confidence            778999999999999876  7899999985 8888876 99999999999999885 6666666654211          


Q ss_pred             ---------cccc-cCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccc
Q 005931          237 ---------FDRL-TTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDI  306 (669)
Q Consensus       237 ---------i~~~-d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~  306 (669)
                               ++.. +..|+||||+|+.+|+.+++++|+++         +.+|.||||+|+..++.+++++|+ ..|+++
T Consensus       280 ~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~---------~~~~~t~L~~A~~~~~~~~v~~Ll-~~ga~~  349 (446)
T PHA02946        280 YDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDN---------DIICEDAMYYAVLSEYETMVDYLL-FNHFSV  349 (446)
T ss_pred             cCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHC---------CCccccHHHHHHHhCHHHHHHHHH-HCCCCC
Confidence                     1111 23578999999999999999999985         236799999999999999999999 788899


Q ss_pred             ccccCCCCCHHHHHHHcCCCchHHHHH
Q 005931          307 YCRNHKNQTALDIIEQAGTNDDATSLK  333 (669)
Q Consensus       307 ~~~n~~g~T~L~~a~~~~~~~~~~~l~  333 (669)
                      +.. .+|.|||++|...++.+..+.++
T Consensus       350 n~~-~~G~t~l~~a~~~~~~~~~~~ll  375 (446)
T PHA02946        350 DSV-VNGHTCMSECVRLNNPVILSKLM  375 (446)
T ss_pred             CCc-cccccHHHHHHHcCCHHHHHHHH
Confidence            986 58999999999998877665554

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=357.86  Aligned_cols=320  Identities=19%  Similarity=0.242  Sum_probs=279.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN   86 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~   86 (669)
                      ..|..|+..|+.+.++.|++ . +..++.+|..|.||||+||..|+.++|++|++.|++ ++..+..|.||||+|+..|+
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~-~-Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad-~n~~~~~g~t~L~~A~~~~~  223 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLE-G-GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD-VNIIALDDLSVLECAVDSKN  223 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHh-C-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-cCccCCCCCCHHHHHHHcCC
Confidence            34888999999999999998 3 466889999999999999999999999999999998 78889999999999999999


Q ss_pred             HHHHHHHHhhCCccc----------------------------cccCCCCCcHHHHHHHcCCH-HHHHHHHcCCCccccc
Q 005931           87 HEVSAFLMEANPTVA----------------------------TKLNHESQSAFSLACRQGHL-DVVKLLINQSWLMEFE  137 (669)
Q Consensus        87 ~eivk~Ll~~~~~~~----------------------------~~~~~~g~tpL~~A~~~g~~-eiv~~Ll~~~~~~~~~  137 (669)
                      .+++++|++.+++..                            ...+..|.||||+|+..++. +++++|++.+.+.+ .
T Consensus       224 ~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin-~  302 (682)
T PHA02876        224 IDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVN-A  302 (682)
T ss_pred             HHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCC-C
Confidence            999988887654421                            12366899999999999996 69999999998876 5


Q ss_pred             cCCCCCcHHHHHHHcC-CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhc-CCHHHHHHHHhcCCccccccCCCCChHHH
Q 005931          138 EDSVESTPIYLAISRG-HTDIAREILEVRPRFAGKTDKNGFSPLHYASSI-GNVNMTKLLLNHNKDLALQYNKDGYTPLH  215 (669)
Q Consensus       138 ~~~~~~t~L~~A~~~g-~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~-g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh  215 (669)
                      .+..|.||||.|+..| ..++++.|+..+.+. +..|..|.||||+|+.. ++.+++++|++.|++++.. |..|.||||
T Consensus       303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~-d~~G~TpLh  380 (682)
T PHA02876        303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANVNAR-DYCDKTPIH  380 (682)
T ss_pred             cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccC-CCCCCCHHH
Confidence            6778999999999999 599999999988875 77899999999999985 5789999999999999986 999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCC-HHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC-CHH
Q 005931          216 LAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDK-YNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK-NYQ  293 (669)
Q Consensus       216 ~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~-~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~-~~~  293 (669)
                      +|+..|+.++++.|+.. +.+++..+..|.||||+|+..++ ..++++|++.  +.++|.+|.+|+||||+|+..+ +.+
T Consensus       381 ~Aa~~~~~~iv~~Ll~~-gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~--gadin~~d~~G~TpLh~Aa~~~~~~~  457 (682)
T PHA02876        381 YAAVRNNVVIINTLLDY-GADIEALSQKIGTALHFALCGTNPYMSVKTLIDR--GANVNSKNKDLSTPLHYACKKNCKLD  457 (682)
T ss_pred             HHHHcCCHHHHHHHHHC-CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhC--CCCCCcCCCCCChHHHHHHHhCCcHH
Confidence            99999999999888865 57899999999999999998665 5678999986  7789999999999999999976 689


Q ss_pred             HHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 005931          294 FVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNI  342 (669)
Q Consensus       294 iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~  342 (669)
                      ++++|+ +.|+|++.+|..|.||+++|...+.      +.+.+...++.
T Consensus       458 iv~lLl-~~Gad~n~~d~~g~tpl~~a~~~~~------~v~~Ll~~~a~  499 (682)
T PHA02876        458 VIEMLL-DNGADVNAINIQNQYPLLIALEYHG------IVNILLHYGAE  499 (682)
T ss_pred             HHHHHH-HCCCCCCCCCCCCCCHHHHHHHhCC------HHHHHHHCCCC
Confidence            999999 7789999999999999999987542      34455555544

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.7e-37  Score=334.52  Aligned_cols=309  Identities=14%  Similarity=0.181  Sum_probs=259.4

Q ss_pred             HHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHH--cCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC
Q 005931            8 NLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAAR--FGHVELVTEITKLCPELVAAENEKLETPLHEACCQG   85 (669)
Q Consensus         8 ~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~--~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g   85 (669)
                      ++|.++..++.+.++.+++..       ....+.++||.++.  .++.++|++|++.|++ ++.+|..|.||||+|+..|
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~-------~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~G~TpLh~Aa~~g   83 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAI-------EPSGNYHILHAYCGIKGLDERFVEELLHRGYS-PNETDDDGNYPLHIASKIN   83 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhcc-------CCCCCChHHHHHHHhcCCCHHHHHHHHHCcCC-CCccCCCCCCHHHHHHHcC
Confidence            478999999999999998721       12224799998875  4468999999999998 7899999999999999999


Q ss_pred             CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCC--HHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931           86 NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGH--LDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE  163 (669)
Q Consensus        86 ~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  163 (669)
                      +.++|++|+++|++++.. |..|.||||+|+..++  .+++++|++++.+.+...+..|.|||| |+..++.++++.|++
T Consensus        84 ~~eiv~lLL~~GAdin~~-d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~  161 (446)
T PHA02946         84 NNRIVAMLLTHGADPNAC-DKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS  161 (446)
T ss_pred             CHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh
Confidence            999999999999998754 9999999999988764  899999999999887667888999997 667799999999999


Q ss_pred             cCCcccCCCCCCCChHHHHHHhcC--CHHHHHHHHhcCCccccccCCCCChHHHHHHHcC--CHHHHHHHHhcCCCCccc
Q 005931          164 VRPRFAGKTDKNGFSPLHYASSIG--NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING--RVKILVAFLSSSPASFDR  239 (669)
Q Consensus       164 ~~~~~~~~~d~~g~t~Lh~Aa~~g--~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g--~~e~v~~LL~~~~~~i~~  239 (669)
                      .+.+. +..|..|.||||+|+..+  +.+++++|+++|++++.. |.+|.||||+|+.+|  +.++++.|+.  +++++.
T Consensus       162 ~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~-d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~  237 (446)
T PHA02946        162 IGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKP-DHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNK  237 (446)
T ss_pred             ccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCC
Confidence            88775 788999999999988754  479999999999999986 999999999999986  7888777763  689999


Q ss_pred             ccCCCCcHHHHHHHcCC-HHHHHHHHHhcCCC------------------CCccC-CCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          240 LTTYGETVFHLAVRFDK-YNAFKFLAESFNTC------------------LFHGQ-DQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       240 ~d~~g~t~Lh~Av~~~~-~~iv~~Ll~~~~~~------------------~in~~-D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      +|..|+||||+|++.++ .+++++|++.+...                  .++.. +..|.||||+|+..|+.+++++|+
T Consensus       238 ~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll  317 (446)
T PHA02946        238 QNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLL  317 (446)
T ss_pred             CCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999988 58999998863210                  01222 246889999999999999999999


Q ss_pred             HhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 005931          300 KETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNI  342 (669)
Q Consensus       300 ~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~  342 (669)
                      ++ +       ..|.|||++|...++    ..+.+++...|+.
T Consensus       318 ~~-~-------~~~~t~L~~A~~~~~----~~~v~~Ll~~ga~  348 (446)
T PHA02946        318 DN-D-------IICEDAMYYAVLSEY----ETMVDYLLFNHFS  348 (446)
T ss_pred             HC-C-------CccccHHHHHHHhCH----HHHHHHHHHCCCC
Confidence            54 3       368999999999875    4456666677755

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.3e-38  Score=333.48  Aligned_cols=303  Identities=24%  Similarity=0.302  Sum_probs=266.6

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCc
Q 005931           31 RILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQS  110 (669)
Q Consensus        31 ~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~t  110 (669)
                      ......|..|+||||+|+.....+.++.|++.|++ +...|.++.+|+|+|+..|+.++++.|++++.+++.. +..|.|
T Consensus        79 ~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad-~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~-de~~~T  156 (929)
T KOG0510|consen   79 AISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGAD-TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLE-DENGFT  156 (929)
T ss_pred             hhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCC-CChhhhhccCchhhccccchHHHHHHHHHhcCCcccc-ccCCCc
Confidence            34566799999999999999999999999999999 8899999999999999999999999999999887655 899999


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC----cccCCCCCCCChHHHHHHhc
Q 005931          111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRP----RFAGKTDKNGFSPLHYASSI  186 (669)
Q Consensus       111 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~----~~~~~~d~~g~t~Lh~Aa~~  186 (669)
                      |||+||..++.|..+.|++.++++. ..+..+.+|+|.|++.|..++.+.++.+.+    ..++..+.++.||||.|+..
T Consensus       157 pLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~  235 (929)
T KOG0510|consen  157 PLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG  235 (929)
T ss_pred             hhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc
Confidence            9999999999998899999998876 677789999999999999999999998322    22466688899999999999


Q ss_pred             CCHHHHHHHHhcCCcccc--------------ccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHH
Q 005931          187 GNVNMTKLLLNHNKDLAL--------------QYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV  252 (669)
Q Consensus       187 g~~eiv~~Ll~~g~~~~~--------------~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av  252 (669)
                      |+.++++..|+.|+....              ..|++|.||||+|++.|+.+.+..|+.. |++++.++.+++||||.|+
T Consensus       236 g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA  314 (929)
T KOG0510|consen  236 GDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF-GASINSKNKDEESPLHFAA  314 (929)
T ss_pred             CCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchHHHH
Confidence            999999999998765432              2488999999999999999998777655 5899999999999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccc---cccCCCCCHHHHHHHcCCCchH
Q 005931          253 RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIY---CRNHKNQTALDIIEQAGTNDDA  329 (669)
Q Consensus       253 ~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~---~~n~~g~T~L~~a~~~~~~~~~  329 (669)
                      .+|+.+.++-|++..+..++|..|..|+||||+|++.|+.+++++|| +.|++..   ..|.+|.||||+|+..|+...+
T Consensus       315 ~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl-~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av  393 (929)
T KOG0510|consen  315 IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLL-NKGALFLNMSEADSDGNTALHLAAKYGNTSAV  393 (929)
T ss_pred             HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHH-hcChhhhcccccccCCchhhhHHHHhccHHHH
Confidence            99999999999995567899999999999999999999999999999 5555544   5699999999999999987665


Q ss_pred             HHHHHHHHHhCCC
Q 005931          330 TSLKKLFKTAGNI  342 (669)
Q Consensus       330 ~~l~~~l~~~~~~  342 (669)
                      +.+    ...|+.
T Consensus       394 ~~L----i~~Ga~  402 (929)
T KOG0510|consen  394 QKL----ISHGAD  402 (929)
T ss_pred             HHH----HHcCCc
Confidence            444    445544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.3e-37  Score=343.02  Aligned_cols=318  Identities=16%  Similarity=0.105  Sum_probs=254.0

Q ss_pred             HhCCHHHHHHHHcCcchhhhccc-CCCCChHHHHHHH--cCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC--HH
Q 005931           14 VRNDKQALINLVGCSNKRILLQR-DASLNTALHLAAR--FGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN--HE   88 (669)
Q Consensus        14 ~~gd~~~l~~ll~~~~~~~l~~~-d~~g~T~Lh~Aa~--~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~--~e   88 (669)
                      ..++.+.++.|++ .+...++.+ |..|.||||.|+.  +++.++|++|++.|++ ++.+|..|.||||+|++.|+  .+
T Consensus       151 ~~v~leiVk~LLe-~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        151 RGIDLDLIKYMVD-VGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             cCCCHHHHHHHHH-CCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHH
Confidence            4689999999998 432457777 8999999999875  4679999999999998 88999999999999999995  59


Q ss_pred             HHHHHHhhCCccccccCCCCCcHHHHHH---HcCCHHHHHHHHcCCCccccccCCCCCcHHH---HHHHcCCHHHHHHHH
Q 005931           89 VSAFLMEANPTVATKLNHESQSAFSLAC---RQGHLDVVKLLINQSWLMEFEEDSVESTPIY---LAISRGHTDIAREIL  162 (669)
Q Consensus        89 ivk~Ll~~~~~~~~~~~~~g~tpL~~A~---~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~---~A~~~g~~~iv~~Ll  162 (669)
                      +|++|+++|++++.. +..|.||||.|+   ..++.++++.|++.......   .....+++   .|+..|+.++++.|+
T Consensus       229 IVklLLe~GADVN~k-D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~---~~~~~~L~~~i~AA~~g~leiVklLL  304 (764)
T PHA02716        229 VIKKIIELGGDMDMK-CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKV---KNIPMILHSYITLARNIDISVVYSFL  304 (764)
T ss_pred             HHHHHHHcCCCCCCC-CCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccc---ccchhhhHHHHHHHHcCCHHHHHHHH
Confidence            999999999998765 889999999875   56788999999876432211   11112333   478889999999999


Q ss_pred             hcCCcccCCCCCCCChHHHHHHh--cCCHHHHHHHHhcCCccccccCCCCChHHHHHHH--------------cCCHHHH
Q 005931          163 EVRPRFAGKTDKNGFSPLHYASS--IGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAI--------------NGRVKIL  226 (669)
Q Consensus       163 ~~~~~~~~~~d~~g~t~Lh~Aa~--~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~--------------~g~~e~v  226 (669)
                      +.+.+. +.+|.+|.||||+|+.  .++.+++++|+++|++++.. |..|.||||+|+.              .++.+++
T Consensus       305 e~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~k-D~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVV  382 (764)
T PHA02716        305 QPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEP-DNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVI  382 (764)
T ss_pred             hCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccC-CCCCCCHHHHHHHhhhhhccccccccccChHHHH
Confidence            988875 6778999999998764  46789999999999998875 8899999998865              3678888


Q ss_pred             HHHHhcCCCCcccccCCCCcHHHH----HHHcCCHHHHHHHHHhcC----------------------------------
Q 005931          227 VAFLSSSPASFDRLTTYGETVFHL----AVRFDKYNAFKFLAESFN----------------------------------  268 (669)
Q Consensus       227 ~~LL~~~~~~i~~~d~~g~t~Lh~----Av~~~~~~iv~~Ll~~~~----------------------------------  268 (669)
                      +.|+.. |++++.+|..|.||||.    |...++.+++++|++...                                  
T Consensus       383 klLL~~-GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~  461 (764)
T PHA02716        383 QCLISL-GADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPT  461 (764)
T ss_pred             HHHHHC-CCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcch
Confidence            877764 58899999999999994    233567888888776310                                  


Q ss_pred             -------------------------CCCCccCCCCCCcHHHHHHHcCCH-----HHHHHHHHhcCcccccccCCCCCHHH
Q 005931          269 -------------------------TCLFHGQDQFGNTVLHLAVLRKNY-----QFVEYIIKETVLDIYCRNHKNQTALD  318 (669)
Q Consensus       269 -------------------------~~~in~~D~~G~TpLh~A~~~~~~-----~iv~~Ll~~~~~d~~~~n~~g~T~L~  318 (669)
                                               ...+|..|..|+||||+|+..|+.     +++++|+ +.|+|+|.+|.+|+|||+
T Consensus       462 ~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL-~~GADIN~~d~~G~TPLh  540 (764)
T PHA02716        462 DLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLL-SIQYNINIPTKNGVTPLM  540 (764)
T ss_pred             hhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHH-hCCCCCcccCCCCCCHHH
Confidence                                     112355688999999999999876     4559999 789999999999999999


Q ss_pred             HHHHcCCCc-hHHHHHHHHHHhCC
Q 005931          319 IIEQAGTND-DATSLKKLFKTAGN  341 (669)
Q Consensus       319 ~a~~~~~~~-~~~~l~~~l~~~~~  341 (669)
                      +|.+.++.+ ....+.+++...|+
T Consensus       541 ~A~~~g~~~~~~~eIvk~LL~~ga  564 (764)
T PHA02716        541 LTMRNNRLSGHQWYIVKNILDKRP  564 (764)
T ss_pred             HHHHcCCccccHHHHHHHHHhcCC
Confidence            999999763 33456666666654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=336.40  Aligned_cols=295  Identities=20%  Similarity=0.201  Sum_probs=259.4

Q ss_pred             cCHHHHHH---HHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcC---CHHHHHHHHHhCCccccccCCCCCcHH
Q 005931            5 MAQNLSEA---IVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFG---HVELVTEITKLCPELVAAENEKLETPL   78 (669)
Q Consensus         5 m~~~L~~A---i~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g---~~e~vk~Ll~~~~~~~~~~n~~g~TpL   78 (669)
                      +...|+..   ...++.+.++.|++ . +..++.++..|.||||+|+..|   +.++++.|++.|++ ++.++..|.|||
T Consensus        11 ~~~~l~~~~~~~~~~~~~~v~~Ll~-~-ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-in~~~~~g~TpL   87 (471)
T PHA03095         11 MEAALYDYLLNASNVTVEEVRRLLA-A-GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-VNAPERCGFTPL   87 (471)
T ss_pred             hHHHHHHHHHcCCCCCHHHHHHHHH-c-CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            34445444   67889999999998 3 4668889999999999999999   99999999999998 788999999999


Q ss_pred             HHHHHcC-CHHHHHHHHhhCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC--
Q 005931           79 HEACCQG-NHEVSAFLMEANPTVATKLNHESQSAFSLAC--RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG--  153 (669)
Q Consensus        79 h~Aa~~g-~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g--  153 (669)
                      |+|+..| +.+++++|++.|+++... +..|.||||+|+  ..++.+++++|++.+.+.+ ..+..|.||||.|+..+  
T Consensus        88 h~A~~~~~~~~iv~lLl~~ga~in~~-~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~~~~~~  165 (471)
T PHA03095         88 HLYLYNATTLDVIKLLIKAGADVNAK-DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNA  165 (471)
T ss_pred             HHHHHcCCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCC
Confidence            9999999 599999999999998665 889999999999  5668999999999998876 56778999999998876  


Q ss_pred             CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhc--CCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH--HHHHHH
Q 005931          154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSI--GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV--KILVAF  229 (669)
Q Consensus       154 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~--g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~--e~v~~L  229 (669)
                      +.++++.|++.+.+... .|..|.||||+++..  ++.++++.|+++|++++.. |..|.||||+|+..|+.  .++..+
T Consensus       166 ~~~iv~~Ll~~g~~~~~-~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~-d~~g~tpLh~Aa~~~~~~~~~v~~l  243 (471)
T PHA03095        166 NVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAAT-DMLGNTPLHSMATGSSCKRSLVLPL  243 (471)
T ss_pred             CHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCccc-CCCCCCHHHHHHhcCCchHHHHHHH
Confidence            68999999999988744 489999999999864  7889999999999999986 99999999999999975  344444


Q ss_pred             HhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc
Q 005931          230 LSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCR  309 (669)
Q Consensus       230 L~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~  309 (669)
                      + ..+.+++.+|..|+||||+|+..|+.+++++|++.  +++++.+|.+|+||||+|+..++.++++.|+ ..+.+++..
T Consensus       244 l-~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~--gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL-~~~~~~~~~  319 (471)
T PHA03095        244 L-IAGISINARNRYGQTPLHYAAVFNNPRACRRLIAL--GADINAVSSDGNTPLSLMVRNNNGRAVRAAL-AKNPSAETV  319 (471)
T ss_pred             H-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCCHHHHHHHH-HhCCCHHHH
Confidence            4 55689999999999999999999999999999986  7788999999999999999999999999999 555666554


Q ss_pred             c
Q 005931          310 N  310 (669)
Q Consensus       310 n  310 (669)
                      +
T Consensus       320 ~  320 (471)
T PHA03095        320 A  320 (471)
T ss_pred             H
Confidence            4

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.3e-36  Score=329.95  Aligned_cols=302  Identities=19%  Similarity=0.254  Sum_probs=252.7

Q ss_pred             HHHHHHHhCCHHHHHHHHcC--cchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC
Q 005931            8 NLSEAIVRNDKQALINLVGC--SNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG   85 (669)
Q Consensus         8 ~L~~Ai~~gd~~~l~~ll~~--~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g   85 (669)
                      +||.++..++.+.+.+.++.  ..+...+.....+.||||.||..|+.++|++|++.|++ ++.+|..|.||||+||..|
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g   81 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHN-VNQPDHRDLTPLHIICKEP   81 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCc
Confidence            38999999998778777762  12223344466789999999999999999999999988 7899999999999999999


Q ss_pred             CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC--CHHHHHHHHh
Q 005931           86 NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG--HTDIAREILE  163 (669)
Q Consensus        86 ~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g--~~~iv~~Ll~  163 (669)
                      +.++++.|++.+.....   ..+.+|++.|+..++.+++++|+..+.......+   ...+......+  ..++++.|++
T Consensus        82 ~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~  155 (477)
T PHA02878         82 NKLGMKEMIRSINKCSV---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLS  155 (477)
T ss_pred             cHhHHHHHHHHHhcccc---ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHH
Confidence            99999999998765432   4678999999999999999999987543221111   11111111122  3459999999


Q ss_pred             cCCcccCCCCCC-CChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 005931          164 VRPRFAGKTDKN-GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT  242 (669)
Q Consensus       164 ~~~~~~~~~d~~-g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~  242 (669)
                      .+.+. +..+.. |.||||+|+..|+.+++++|+++|++++.. |..|.||||.|+..|+.++++.|+.. +++++.+|.
T Consensus       156 ~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~-ga~in~~d~  232 (477)
T PHA02878        156 YGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP-DKTNNSPLHHAVKHYNKPIVHILLEN-GASTDARDK  232 (477)
T ss_pred             cCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCC
Confidence            99886 666777 999999999999999999999999999876 99999999999999999998888754 589999999


Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHhcCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931          243 YGETVFHLAVRF-DKYNAFKFLAESFNTCLFHGQDQ-FGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDII  320 (669)
Q Consensus       243 ~g~t~Lh~Av~~-~~~~iv~~Ll~~~~~~~in~~D~-~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a  320 (669)
                      .|+||||+|+.. ++.+++++|++.  +.++|.++. .|+||||+|  .++.+++++|+ +.|+|++.+|..|.|||++|
T Consensus       233 ~g~TpLh~A~~~~~~~~iv~~Ll~~--gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll-~~gadin~~d~~g~TpL~~A  307 (477)
T PHA02878        233 CGNTPLHISVGYCKDYDILKLLLEH--GVDVNAKSYILGLTALHSS--IKSERKLKLLL-EYGADINSLNSYKLTPLSSA  307 (477)
T ss_pred             CCCCHHHHHHHhcCCHHHHHHHHHc--CCCCCccCCCCCCCHHHHH--ccCHHHHHHHH-HCCCCCCCcCCCCCCHHHHH
Confidence            999999999976 789999999997  677888875 899999999  56789999999 78899999999999999999


Q ss_pred             HHcC
Q 005931          321 EQAG  324 (669)
Q Consensus       321 ~~~~  324 (669)
                      ....
T Consensus       308 ~~~~  311 (477)
T PHA02878        308 VKQY  311 (477)
T ss_pred             HHHc
Confidence            8754

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.2e-36  Score=330.91  Aligned_cols=287  Identities=18%  Similarity=0.264  Sum_probs=257.8

Q ss_pred             HHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHH-----HHHcCCH
Q 005931           13 IVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHE-----ACCQGNH   87 (669)
Q Consensus        13 i~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~-----Aa~~g~~   87 (669)
                      ......+.++.+++ . +...+..+..+.||||.|+..|+.++|++|++.|.+ ++..+..|.||||+     |+..|+.
T Consensus        10 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~   86 (480)
T PHA03100         10 SRIIKVKNIKYIIM-E-DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVK   86 (480)
T ss_pred             hhHHHHHHHHHHHh-c-CccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchH
Confidence            34455677788886 3 355667789999999999999999999999999988 78888999999999     9999999


Q ss_pred             HHHHHHHhhCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC--CHHHHHHHHh
Q 005931           88 EVSAFLMEANPTVATKLNHESQSAFSLAC--RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG--HTDIAREILE  163 (669)
Q Consensus        88 eivk~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g--~~~iv~~Ll~  163 (669)
                      +++++|++.|+++ ...+..|.||||+|+  ..|+.+++++|++.+.+.+ ..+..|.||||.|+..+  +.++++.|++
T Consensus        87 ~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~  164 (480)
T PHA03100         87 EIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHLYLESNKIDLKILKLLID  164 (480)
T ss_pred             HHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCChHHHHHHHHH
Confidence            9999999999998 455899999999999  9999999999999998876 56777999999999999  9999999999


Q ss_pred             cCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCC------ChHHHHHHHcCC--HHHHHHHHhcCCC
Q 005931          164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDG------YTPLHLAAINGR--VKILVAFLSSSPA  235 (669)
Q Consensus       164 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g------~tpLh~Aa~~g~--~e~v~~LL~~~~~  235 (669)
                      .+.+. +..|..|.||||+|+..|+.+++++|+++|++++.. +..|      .||||.|+..|+  .++++.|+.. |.
T Consensus       165 ~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-g~  241 (480)
T PHA03100        165 KGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAG-DIETLLFTIFETPLHIAACYNEITLEVVNYLLSY-GV  241 (480)
T ss_pred             CCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCC-CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-CC
Confidence            99885 667889999999999999999999999999999876 7777      899999999999  9998888866 58


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccccc
Q 005931          236 SFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRN  310 (669)
Q Consensus       236 ~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n  310 (669)
                      +++.+|..|+||||+|+..++.+++++|++.  +++++.+|..|.||||+|+..++.+++++|+ +.|++++..+
T Consensus       242 din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~--gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll-~~g~~i~~i~  313 (480)
T PHA03100        242 PINIKDVYGFTPLHYAVYNNNPEFVKYLLDL--GANPNLVNKYGDTPLHIAILNNNKEIFKLLL-NNGPSIKTII  313 (480)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHhCCHHHHHHHH-hcCCCHHHHH
Confidence            8999999999999999999999999999996  5688999999999999999999999999999 6666777554

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-35  Score=326.43  Aligned_cols=280  Identities=20%  Similarity=0.223  Sum_probs=250.9

Q ss_pred             HHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC---CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC-C
Q 005931           45 HLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG---NHEVSAFLMEANPTVATKLNHESQSAFSLACRQG-H  120 (669)
Q Consensus        45 h~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g---~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g-~  120 (669)
                      ..++..++.++|++|++.|.+ ++.++..|.||||+|+..|   +.+++++|++.|++++.. +..|.||||+|+..| +
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~-~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP-ERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCc
Confidence            557778899999999999998 7899999999999999999   999999999999998766 779999999999999 5


Q ss_pred             HHHHHHHHcCCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcC--CHHHHHHHH
Q 005931          121 LDVVKLLINQSWLMEFEEDSVESTPIYLAI--SRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG--NVNMTKLLL  196 (669)
Q Consensus       121 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~--~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g--~~eiv~~Ll  196 (669)
                      .+++++|++++.+.+ ..+..|.||||.|+  ..++.++++.|++.+.+. +..|..|.||||+|+..+  +.+++++|+
T Consensus        97 ~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll  174 (471)
T PHA03095         97 LDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLI  174 (471)
T ss_pred             HHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            999999999998876 56777999999999  556899999999999885 778999999999998866  689999999


Q ss_pred             hcCCccccccCCCCChHHHHHHHc--CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCH--HHHHHHHHhcCCCCC
Q 005931          197 NHNKDLALQYNKDGYTPLHLAAIN--GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKY--NAFKFLAESFNTCLF  272 (669)
Q Consensus       197 ~~g~~~~~~~~~~g~tpLh~Aa~~--g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~--~iv~~Ll~~~~~~~i  272 (669)
                      ++|+++... +..|.||||.|+..  ++.++++.|+.. +.+++.+|..|+||||+|+..++.  .+++.|++.  +.++
T Consensus       175 ~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~--g~di  250 (471)
T PHA03095        175 DAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA--GISI  250 (471)
T ss_pred             HcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHc--CCCC
Confidence            999999987 99999999999875  677777776655 589999999999999999999875  577788875  7789


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHH
Q 005931          273 HGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLK  333 (669)
Q Consensus       273 n~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~  333 (669)
                      |.+|..|+||||+|+..|+.+++++|+ +.|+|++.+|.+|+|||++|...++.+....++
T Consensus       251 n~~d~~g~TpLh~A~~~~~~~~v~~LL-~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL  310 (471)
T PHA03095        251 NARNRYGQTPLHYAAVFNNPRACRRLI-ALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL  310 (471)
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999 778999999999999999999999876655443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.5e-34  Score=318.89  Aligned_cols=305  Identities=18%  Similarity=0.144  Sum_probs=226.0

Q ss_pred             ccCHHHHHHHH--hCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCC--HHHHHHHHHhCCccccccCCCCCcHHH
Q 005931            4 GMAQNLSEAIV--RNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGH--VELVTEITKLCPELVAAENEKLETPLH   79 (669)
Q Consensus         4 ~m~~~L~~Ai~--~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~--~e~vk~Ll~~~~~~~~~~n~~g~TpLh   79 (669)
                      +.+| ||.|+.  .++.+.++.|++ . +..++.+|..|.||||+|+..|+  .++|++|++.|++ ++.+|..|+||||
T Consensus       177 G~Tp-LH~A~~n~~~~~eIVklLLe-~-GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-VN~kD~~G~TPLh  252 (764)
T PHA02716        177 GYGI-LHAYLGNMYVDIDILEWLCN-N-GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-MDMKCVNGMSPIM  252 (764)
T ss_pred             CCcH-HHHHHHhccCCHHHHHHHHH-c-CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence            4455 887754  468999999998 3 46788999999999999999995  5999999999998 8899999999999


Q ss_pred             HHH---HcCCHHHHHHHHhhCCccccccCCCCCcHHH---HHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHH--
Q 005931           80 EAC---CQGNHEVSAFLMEANPTVATKLNHESQSAFS---LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAIS--  151 (669)
Q Consensus        80 ~Aa---~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~---~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~--  151 (669)
                      +|+   ..++.++++.|++.+.....   .....+++   .|+..|+.+++++|++++.+.+ ..+..|+||||.|+.  
T Consensus       253 ~Ai~~a~n~~~EIvkiLie~~d~n~~---~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN-~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        253 TYIINIDNINPEITNIYIESLDGNKV---KNIPMILHSYITLARNIDISVVYSFLQPGVKLH-YKDSAGRTCLHQYILRH  328 (764)
T ss_pred             HHHHhhhccCHHHHHHHHHhcccccc---ccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee-ccCCCCCCHHHHHHHHh
Confidence            875   45677888888775422111   11112233   3677788888888888777665 456667888887654  


Q ss_pred             cCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHh--------------cCCHHHHHHHHhcCCccccccCCCCChHHHH-
Q 005931          152 RGHTDIAREILEVRPRFAGKTDKNGFSPLHYASS--------------IGNVNMTKLLLNHNKDLALQYNKDGYTPLHL-  216 (669)
Q Consensus       152 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~--------------~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~-  216 (669)
                      .++.+++++|++.+.+. +.+|..|+||||+|+.              .++.+++++|+++|++++.. |..|.||||. 
T Consensus       329 ~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~k-n~~G~TPLh~y  406 (764)
T PHA02716        329 NISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV-NCLGYTPLTSY  406 (764)
T ss_pred             CCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCc-CCCCCChHHHH
Confidence            34677888888777664 6677778888887754              25678888888888877765 7778888873 


Q ss_pred             ---HHHcCCHHHHHHHHhcC------------------------------------------------------------
Q 005931          217 ---AAINGRVKILVAFLSSS------------------------------------------------------------  233 (669)
Q Consensus       217 ---Aa~~g~~e~v~~LL~~~------------------------------------------------------------  233 (669)
                         |...++.++++.|+...                                                            
T Consensus       407 ~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~  486 (764)
T PHA02716        407 ICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIE  486 (764)
T ss_pred             HHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHh
Confidence               22245566665555421                                                            


Q ss_pred             CCCcccccCCCCcHHHHHHHcCCH-----HHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCH-----HHHHHHHHhcC
Q 005931          234 PASFDRLTTYGETVFHLAVRFDKY-----NAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNY-----QFVEYIIKETV  303 (669)
Q Consensus       234 ~~~i~~~d~~g~t~Lh~Av~~~~~-----~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~-----~iv~~Ll~~~~  303 (669)
                      ...++..|..|+||||+|+..|+.     +++++|++.  ++++|.+|.+|+||||+|+++|+.     ++++.|| +.|
T Consensus       487 ~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~--GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL-~~g  563 (764)
T PHA02716        487 RYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI--QYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNIL-DKR  563 (764)
T ss_pred             hccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC--CCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHH-hcC
Confidence            112345578899999999999886     456999986  788999999999999999999976     9999999 677


Q ss_pred             cccccccCCCCCHHHHHHHcCCCc
Q 005931          304 LDIYCRNHKNQTALDIIEQAGTND  327 (669)
Q Consensus       304 ~d~~~~n~~g~T~L~~a~~~~~~~  327 (669)
                      ++++..      .+.++...++.+
T Consensus       564 a~~~~~------~l~~~~~~~~~~  581 (764)
T PHA02716        564 PNVDIV------IIFLDKCYANGK  581 (764)
T ss_pred             CCcchH------HHHHHhhhhhhH
Confidence            777766      377776555443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.2e-34  Score=309.97  Aligned_cols=297  Identities=21%  Similarity=0.261  Sum_probs=252.9

Q ss_pred             ccCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931            4 GMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC   83 (669)
Q Consensus         4 ~m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~   83 (669)
                      +.+ +|+.|+..|+.+.++.|++ . +..++..+..|.||||.|+..|+.+++++|++.|.+. .          ..+..
T Consensus        35 ~~t-pL~~A~~~g~~~iv~~Ll~-~-Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~-~----------~~~~~  100 (434)
T PHA02874         35 TTT-PLIDAIRSGDAKIVELFIK-H-GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDT-S----------ILPIP  100 (434)
T ss_pred             CCC-HHHHHHHcCCHHHHHHHHH-C-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C----------cchhc
Confidence            344 4999999999999999998 3 3556788999999999999999999999999998763 1          12334


Q ss_pred             cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931           84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE  163 (669)
Q Consensus        84 ~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  163 (669)
                      ..+.++++.|++.|.++... +..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..++.++++.|++
T Consensus       101 ~~~~~~i~~ll~~g~d~n~~-~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~  178 (434)
T PHA02874        101 CIEKDMIKTILDCGIDVNIK-DAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYPIHIAIKHNFFDIIKLLLE  178 (434)
T ss_pred             cCCHHHHHHHHHCcCCCCCC-CCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            56789999999999998765 8899999999999999999999999998876 567779999999999999999999999


Q ss_pred             cCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 005931          164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTY  243 (669)
Q Consensus       164 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~  243 (669)
                      .+.+. +..+..|.||||+|+..|+.+++++|+++|+++... +..|.||||.|+..+. +.+..|+  .+.+++..|..
T Consensus       179 ~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~-~~~g~TpL~~A~~~~~-~~i~~Ll--~~~~in~~d~~  253 (434)
T PHA02874        179 KGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK-CKNGFTPLHNAIIHNR-SAIELLI--NNASINDQDID  253 (434)
T ss_pred             CCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHCCh-HHHHHHH--cCCCCCCcCCC
Confidence            98775 677899999999999999999999999999998875 8899999999999876 4556555  35788999999


Q ss_pred             CCcHHHHHHHcC-CHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHhcCcccccccCCC-CCHHHHH
Q 005931          244 GETVFHLAVRFD-KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK-NYQFVEYIIKETVLDIYCRNHKN-QTALDII  320 (669)
Q Consensus       244 g~t~Lh~Av~~~-~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~-~~~iv~~Ll~~~~~d~~~~n~~g-~T~L~~a  320 (669)
                      |+||||+|+..+ +.+++++|++.  +++++.+|..|+||||+|+..+ ..++++.|+ ..++.++..+..+ .+++..+
T Consensus       254 G~TpLh~A~~~~~~~~iv~~Ll~~--gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll-~~~~~~~~~~~~~~~~~~~~~  330 (434)
T PHA02874        254 GSTPLHHAINPPCDIDIIDILLYH--KADISIKDNKGENPIDTAFKYINKDPVIKDII-ANAVLIKEADKLKDSDFLEHI  330 (434)
T ss_pred             CCCHHHHHHhcCCcHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHhCCccHHHHHHH-HhcCchhhccccchhHHHHHH
Confidence            999999999876 78999999986  7788999999999999999987 677889988 5555555555444 4555555


Q ss_pred             HHcC
Q 005931          321 EQAG  324 (669)
Q Consensus       321 ~~~~  324 (669)
                      ....
T Consensus       331 ~i~~  334 (434)
T PHA02874        331 EIKD  334 (434)
T ss_pred             HHhc
Confidence            4433

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-34  Score=317.26  Aligned_cols=278  Identities=22%  Similarity=0.301  Sum_probs=249.4

Q ss_pred             CCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHH-----HHHcCCHHHHH
Q 005931           51 GHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL-----ACRQGHLDVVK  125 (669)
Q Consensus        51 g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~-----A~~~g~~eiv~  125 (669)
                      ...++++++++.+ +..+..+..+.||||.|+..|+.++|++|++.|+++... +..+.||||+     |+..++.++++
T Consensus        13 ~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~-~~~~~t~L~~~~~~~a~~~~~~~iv~   90 (480)
T PHA03100         13 IKVKNIKYIIMED-DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSS-TKNNSTPLHYLSNIKYNLTDVKEIVK   90 (480)
T ss_pred             HHHHHHHHHHhcC-ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCc-cccCcCHHHHHHHHHHHhhchHHHHH
Confidence            3457788888765 557778889999999999999999999999999987655 7889999999     99999999999


Q ss_pred             HHHcCCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcC--CHHHHHHHHhcCCc
Q 005931          126 LLINQSWLMEFEEDSVESTPIYLAI--SRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG--NVNMTKLLLNHNKD  201 (669)
Q Consensus       126 ~Ll~~~~~~~~~~~~~~~t~L~~A~--~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g--~~eiv~~Ll~~g~~  201 (669)
                      +|++.+.+.+ ..+..|.||||.|+  ..|+.++++.|++.+.+. +..+..|.||||+|+..|  +.+++++|+++|++
T Consensus        91 ~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d  168 (480)
T PHA03100         91 LLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD  168 (480)
T ss_pred             HHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC
Confidence            9999998884 67788999999999  999999999999998875 678899999999999999  99999999999999


Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC------CcHHHHHHHcCC--HHHHHHHHHhcCCCCCc
Q 005931          202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYG------ETVFHLAVRFDK--YNAFKFLAESFNTCLFH  273 (669)
Q Consensus       202 ~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g------~t~Lh~Av~~~~--~~iv~~Ll~~~~~~~in  273 (669)
                      ++.. +..|.||||+|+..|+.++++.|++. +++++..+..|      .||||.|+..++  .+++++|++.  +.+++
T Consensus       169 in~~-d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~--g~din  244 (480)
T PHA03100        169 INAK-NRYGYTPLHIAVEKGNIDVIKFLLDN-GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY--GVPIN  244 (480)
T ss_pred             cccc-cCCCCCHHHHHHHhCCHHHHHHHHHc-CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc--CCCCC
Confidence            9876 88999999999999999998888865 47888888888      999999999999  9999999996  67889


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCC
Q 005931          274 GQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGN  341 (669)
Q Consensus       274 ~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~  341 (669)
                      .+|..|+||||+|+..++.+++++|+ +.|+|++.+|..|.||+++|...++.+.    .+++...|+
T Consensus       245 ~~d~~g~TpL~~A~~~~~~~iv~~Ll-~~gad~n~~d~~g~tpl~~A~~~~~~~i----v~~Ll~~g~  307 (480)
T PHA03100        245 IKDVYGFTPLHYAVYNNNPEFVKYLL-DLGANPNLVNKYGDTPLHIAILNNNKEI----FKLLLNNGP  307 (480)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHhCCHHH----HHHHHhcCC
Confidence            99999999999999999999999999 6777999999999999999999886544    444445553

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=301.24  Aligned_cols=329  Identities=14%  Similarity=0.147  Sum_probs=251.7

Q ss_pred             ccCHHHHHHHHhC---CHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcC--CHHHHHHHHHhCCcc-ccccCCCCCcH
Q 005931            4 GMAQNLSEAIVRN---DKQALINLVGCSNKRILLQRDASLNTALHLAARFG--HVELVTEITKLCPEL-VAAENEKLETP   77 (669)
Q Consensus         4 ~m~~~L~~Ai~~g---d~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g--~~e~vk~Ll~~~~~~-~~~~n~~g~Tp   77 (669)
                      |.++ ||.|+..|   +.+.++.|++  .+..++.+|..|.||||+|+..|  +.|+|++|++.+... .+..+..+++|
T Consensus        41 G~Ta-Lh~A~~~~~~~~~eivklLLs--~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~  117 (672)
T PHA02730         41 GNNA-LHCYVSNKCDTDIKIVRLLLS--RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFD  117 (672)
T ss_pred             CCcH-HHHHHHcCCcCcHHHHHHHHh--CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCch
Confidence            3444 99999987   5899999998  34677889999999999999976  799999999996531 45577778999


Q ss_pred             HHHHHH--cCCHHHHHHHHh-hCCccccccC----CCCCcHHHHHHHcCCHHHHHHHHcCCCccc-c------ccCCCCC
Q 005931           78 LHEACC--QGNHEVSAFLME-ANPTVATKLN----HESQSAFSLACRQGHLDVVKLLINQSWLME-F------EEDSVES  143 (669)
Q Consensus        78 Lh~Aa~--~g~~eivk~Ll~-~~~~~~~~~~----~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~-~------~~~~~~~  143 (669)
                      ||.++.  +++.++|++|++ .+.++....+    ..|.+|+++|...++.|+|++|+++++... .      ..+....
T Consensus       118 l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~  197 (672)
T PHA02730        118 LYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCK  197 (672)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccc
Confidence            999998  889999999997 4445443322    478999999999999999999999998873 1      1222234


Q ss_pred             cHHHHHH------HcCCHHHHHHHHhcCCcccCCCCCCCChHHHH--HHhcCCHHHHHHHHh------------------
Q 005931          144 TPIYLAI------SRGHTDIAREILEVRPRFAGKTDKNGFSPLHY--ASSIGNVNMTKLLLN------------------  197 (669)
Q Consensus       144 t~L~~A~------~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~--Aa~~g~~eiv~~Ll~------------------  197 (669)
                      |.||+++      ..++.++++.|+++|.+. +.+|.+|.||||+  ++..|+.|++++|++                  
T Consensus       198 ~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~  276 (672)
T PHA02730        198 NSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRG  276 (672)
T ss_pred             hhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhh
Confidence            5566443      456789999999999875 7889999999985  556778999999999                  


Q ss_pred             --------------cCCcccc-------------------ccCCCCCh---------------------HHHHHHHcC--
Q 005931          198 --------------HNKDLAL-------------------QYNKDGYT---------------------PLHLAAING--  221 (669)
Q Consensus       198 --------------~g~~~~~-------------------~~~~~g~t---------------------pLh~Aa~~g--  221 (669)
                                    +|++...                   ..+..|.+                     .||.-...+  
T Consensus       277 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~  356 (672)
T PHA02730        277 VLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDM  356 (672)
T ss_pred             hHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCc
Confidence                          6776643                   13555544                     566666655  


Q ss_pred             -CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCC----HHHHHHHHHhcCCCCCccCCCCCCcHHHH---HHHcC---
Q 005931          222 -RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDK----YNAFKFLAESFNTCLFHGQDQFGNTVLHL---AVLRK---  290 (669)
Q Consensus       222 -~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~----~~iv~~Ll~~~~~~~in~~D~~G~TpLh~---A~~~~---  290 (669)
                       +.++++.|+++ |++++.. ..|+||||+|+..++    .+++++|++++...++|.+|..|.||||.   |...+   
T Consensus       357 v~ieIvelLIs~-GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        357 VSIPILRCMLDN-GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             CcHHHHHHHHHC-CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence             57776666655 5888875 789999999888775    79999999875555789999999999984   33222   


Q ss_pred             ------CHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCCC
Q 005931          291 ------NYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIG  343 (669)
Q Consensus       291 ------~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~  343 (669)
                            ..+++++|+ ..|+|+|.+|..|+|||++|+..++.    .+.++|...|+..
T Consensus       435 ~~~e~~~~~ivk~LI-s~GADINakD~~G~TPLh~Aa~~~~~----eive~LI~~GAdI  488 (672)
T PHA02730        435 HCYETILIDVFDILS-KYMDDIDMIDNENKTLLYYAVDVNNI----QFARRLLEYGASV  488 (672)
T ss_pred             cccchhHHHHHHHHH-hcccchhccCCCCCCHHHHHHHhCCH----HHHHHHHHCCCCC
Confidence                  235689999 78889999999999999999987754    3456666777653

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=309.43  Aligned_cols=324  Identities=16%  Similarity=0.129  Sum_probs=193.5

Q ss_pred             ccCHHHHHHHHh---CCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCH---------------------------
Q 005931            4 GMAQNLSEAIVR---NDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHV---------------------------   53 (669)
Q Consensus         4 ~m~~~L~~Ai~~---gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~---------------------------   53 (669)
                      +.++ ||.|+..   |+.+.++.|++ . +..++.++..|.||||+|+..|+.                           
T Consensus        32 g~t~-Lh~a~~~~~~~~~~~v~~Ll~-~-ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~  108 (661)
T PHA02917         32 KNNA-LHAYLFNEHCNNVEVVKLLLD-S-GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSY  108 (661)
T ss_pred             CCcH-HHHHHHhhhcCcHHHHHHHHH-C-CCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHH
Confidence            4555 8886554   88999999998 3 345577788899999988877663                           


Q ss_pred             --------HHHHHHHHhCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHhhCCccccc--cCCCC-----------Cc
Q 005931           54 --------ELVTEITKLCPELVAAENEKLETPLHEAC--CQGNHEVSAFLMEANPTVATK--LNHES-----------QS  110 (669)
Q Consensus        54 --------e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa--~~g~~eivk~Ll~~~~~~~~~--~~~~g-----------~t  110 (669)
                              |+|++|++.|++ ++.+|..|.||||.|+  ..|+.+++++|+++|++++..  .+..|           .|
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t  187 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGT  187 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccccc
Confidence                    334444444444 4555555666665332  345566666666666555321  01112           36


Q ss_pred             HHHHHHH-----------cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCH--HHHHHHHhcCCccc---CCCCC
Q 005931          111 AFSLACR-----------QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT--DIAREILEVRPRFA---GKTDK  174 (669)
Q Consensus       111 pL~~A~~-----------~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~--~iv~~Ll~~~~~~~---~~~d~  174 (669)
                      |||+|+.           .++.+++++|+++|.+.+ ..+..|.||||+|+.+|+.  ++++.|++ +.+..   ...|.
T Consensus       188 ~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn-~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~  265 (661)
T PHA02917        188 VLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS-SIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDL  265 (661)
T ss_pred             HHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc-cCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCc
Confidence            6666553           345566666666665554 3445556666666665553  45555543 33221   12233


Q ss_pred             CCChHHHHHHh-------c--CCHHHHHHHHhcCCcccc-------cc-----------CCCCChHHHHH---HHcCC--
Q 005931          175 NGFSPLHYASS-------I--GNVNMTKLLLNHNKDLAL-------QY-----------NKDGYTPLHLA---AINGR--  222 (669)
Q Consensus       175 ~g~t~Lh~Aa~-------~--g~~eiv~~Ll~~g~~~~~-------~~-----------~~~g~tpLh~A---a~~g~--  222 (669)
                      .|.+|+|+|+.       .  .+.+++++|++.|++...       ..           ...+.+++|.+   +..|.  
T Consensus       266 ~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  345 (661)
T PHA02917        266 TCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDID  345 (661)
T ss_pred             ccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCc
Confidence            44444444441       0  134445555555543210       00           00112222222   22333  


Q ss_pred             HHHHH-----------------------------HHHhcCCCCcccccCCCCcHHHHHHHcCC-----------------
Q 005931          223 VKILV-----------------------------AFLSSSPASFDRLTTYGETVFHLAVRFDK-----------------  256 (669)
Q Consensus       223 ~e~v~-----------------------------~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~-----------------  256 (669)
                      .++++                             .||...+++++..+.+|+||||.|++.++                 
T Consensus       346 ~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~  425 (661)
T PHA02917        346 IPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDM  425 (661)
T ss_pred             HHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchh
Confidence            22444                             44444445555556679999999875432                 


Q ss_pred             ------HHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHH-cCCCchH
Q 005931          257 ------YNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQ-AGTNDDA  329 (669)
Q Consensus       257 ------~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~-~~~~~~~  329 (669)
                            .+++++|+++  ++++|.+|..|+||||+|+..++.+++++|+ +.|+|++.+|..|+|||++|.. .++.   
T Consensus       426 ~~~~~~~~~v~~Ll~~--GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll-~~GAdin~~d~~G~T~L~~A~~~~~~~---  499 (661)
T PHA02917        426 SYACPILSTINICLPY--LKDINMIDKRGETLLHKAVRYNKQSLVSLLL-ESGSDVNIRSNNGYTCIAIAINESRNI---  499 (661)
T ss_pred             hhhhhhHHHHHHHHHC--CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHhCCCH---
Confidence                  4577899886  6788999999999999999999999999999 7889999999999999999985 3333   


Q ss_pred             HHHHHHHHHhC
Q 005931          330 TSLKKLFKTAG  340 (669)
Q Consensus       330 ~~l~~~l~~~~  340 (669)
                       .+.+++...+
T Consensus       500 -~iv~~LL~~g  509 (661)
T PHA02917        500 -ELLKMLLCHK  509 (661)
T ss_pred             -HHHHHHHHcC
Confidence             3445555544

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.3e-33  Score=306.11  Aligned_cols=281  Identities=18%  Similarity=0.212  Sum_probs=228.7

Q ss_pred             HHHHHH---hCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHc--CCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931            9 LSEAIV---RNDKQALINLVGCSNKRILLQRDASLNTALHLAARF--GHVELVTEITKLCPELVAAENEKLETPLHEACC   83 (669)
Q Consensus         9 L~~Ai~---~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~--g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~   83 (669)
                      ||.-+.   ..+.+.++.|++ . +..++.+ ..|.|+||.++..  ++.++|+.|++.|++ ++.++ .+.||||.|+.
T Consensus         4 l~~y~~~~~~~~~~~v~~LL~-~-GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd-vn~~~-~~~tpL~~a~~   78 (494)
T PHA02989          4 LYEYILYSDTVDKNALEFLLR-T-GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGAD-VNYKG-YIETPLCAVLR   78 (494)
T ss_pred             HHHHHHcCCcCcHHHHHHHHH-c-CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCC-ccCCC-CCCCcHHHHHh
Confidence            666655   478999999998 3 3456666 5688988776554  368999999999988 56665 57899999887


Q ss_pred             cC------CHHHHHHHHhhCCccccccCCCCCcHHHHHHHc---CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHc--
Q 005931           84 QG------NHEVSAFLMEANPTVATKLNHESQSAFSLACRQ---GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISR--  152 (669)
Q Consensus        84 ~g------~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~--  152 (669)
                      .+      +.+++++|+++|++++.. +..|.||||.|+..   ++.+++++|+++|++.+...+..|.||||+|+..  
T Consensus        79 ~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~  157 (494)
T PHA02989         79 NREITSNKIKKIVKLLLKFGADINLK-TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFS  157 (494)
T ss_pred             ccCcchhhHHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhcc
Confidence            54      468999999999997665 88899999988765   6789999999999888446777899999998764  


Q ss_pred             CCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhc----CCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC------C
Q 005931          153 GHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI----GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING------R  222 (669)
Q Consensus       153 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~----g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g------~  222 (669)
                      ++.++++.|++.+.+.....+..|.||||.|+..    ++.+++++|+++|++++.. +..+.|+||.++..+      .
T Consensus       158 ~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~-~~~~~t~l~~~~~~~~~~~~~~  236 (494)
T PHA02989        158 VKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETN-NNGSESVLESFLDNNKILSKKE  236 (494)
T ss_pred             CCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcccc-CCccccHHHHHHHhchhhcccc
Confidence            5789999999999886544677899999998765    4889999999999998876 778899998876543      4


Q ss_pred             HHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          223 VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       223 ~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      .+++..++ . +++++.+|..|+||||+|+..++.+++++|++.  +++++.+|..|+||||+|+..++.++++.|++
T Consensus       237 ~~il~~l~-~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~--Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~  310 (494)
T PHA02989        237 FKVLNFIL-K-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKL--GDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQ  310 (494)
T ss_pred             hHHHHHHH-h-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            55655444 3 378999999999999999999999999999986  67888999999999999999999999999984

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=304.14  Aligned_cols=274  Identities=16%  Similarity=0.193  Sum_probs=234.8

Q ss_pred             cCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHc--CCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC------CH
Q 005931           50 FGHVELVTEITKLCPELVAAENEKLETPLHEACCQ--GNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG------HL  121 (669)
Q Consensus        50 ~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~--g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g------~~  121 (669)
                      ....++|++|++.|.+ ++.. ..|.||||.++..  ++.++|++|+++|++++.. + .+.||||.|+.++      +.
T Consensus        13 ~~~~~~v~~LL~~Gad-vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~-~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         13 TVDKNALEFLLRTGFD-VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYK-G-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             cCcHHHHHHHHHcCCC-cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCC-C-CCCCcHHHHHhccCcchhhHH
Confidence            4789999999999998 6666 5799999876654  3789999999999998764 3 5799999998754      47


Q ss_pred             HHHHHHHcCCCccccccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhc--CCHHHHHHHH
Q 005931          122 DVVKLLINQSWLMEFEEDSVESTPIYLAISR---GHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI--GNVNMTKLLL  196 (669)
Q Consensus       122 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~--g~~eiv~~Ll  196 (669)
                      +++++|+++|++.+ ..+..|.||||.|+..   ++.++++.|+++|.+..+..|..|.||||+|+..  ++.+++++|+
T Consensus        89 ~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll  167 (494)
T PHA02989         89 KIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL  167 (494)
T ss_pred             HHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            89999999999887 5677799999988765   6799999999999886467889999999998754  6899999999


Q ss_pred             hcCCccccccCCCCChHHHHHHHcC----CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHc------CCHHHHHHHHHh
Q 005931          197 NHNKDLALQYNKDGYTPLHLAAING----RVKILVAFLSSSPASFDRLTTYGETVFHLAVRF------DKYNAFKFLAES  266 (669)
Q Consensus       197 ~~g~~~~~~~~~~g~tpLh~Aa~~g----~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~------~~~~iv~~Ll~~  266 (669)
                      ++|++++...+..|.||||.|+..+    +.++++.|++. |++++..+..|.|+||.++..      +..+++++|+. 
T Consensus       168 ~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~-Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-  245 (494)
T PHA02989        168 SFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK-GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-  245 (494)
T ss_pred             HcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhC-CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-
Confidence            9999998755889999999998764    88998887765 578999999999999987764      35678888775 


Q ss_pred             cCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHH
Q 005931          267 FNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLK  333 (669)
Q Consensus       267 ~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~  333 (669)
                        +.++|.+|..|+||||+|+..++.+++++|+ +.|+|++.+|..|.|||++|...++.+.++.++
T Consensus       246 --~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL-~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL  309 (494)
T PHA02989        246 --YIKINKKDKKGFNPLLISAKVDNYEAFNYLL-KLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRIL  309 (494)
T ss_pred             --CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence              5789999999999999999999999999999 778999999999999999999998766554443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=302.81  Aligned_cols=296  Identities=17%  Similarity=0.168  Sum_probs=243.5

Q ss_pred             cCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHc
Q 005931            5 MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ   84 (669)
Q Consensus         5 m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~   84 (669)
                      .+| ||.|+..|+.+.++.|++ . +..++.+|..|.||||+||..|+.+++++|++.+... ..  ..+.+|++.|+..
T Consensus        38 ~tP-Lh~A~~~g~~e~vk~Ll~-~-gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-~~--~~~~~~l~~a~~~  111 (477)
T PHA02878         38 FIP-LHQAVEARNLDVVKSLLT-R-GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC-SV--FYTLVAIKDAFNN  111 (477)
T ss_pred             cch-HHHHHHcCCHHHHHHHHH-C-CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc-cc--ccchhhHHHHHHc
Confidence            344 999999999999999998 3 3567889999999999999999999999999986552 22  5678999999999


Q ss_pred             CCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc--CCHHHHHHHHcCCCccccccCCC-CCcHHHHHHHcCCHHHHHHH
Q 005931           85 GNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ--GHLDVVKLLINQSWLMEFEEDSV-ESTPIYLAISRGHTDIAREI  161 (669)
Q Consensus        85 g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~eiv~~Ll~~~~~~~~~~~~~-~~t~L~~A~~~g~~~iv~~L  161 (669)
                      |+.+++++|+..+.......+   ...+..+...  .+.+++++|++++.+.+. .+.. |.||||.|+..|+.++++.|
T Consensus       112 ~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~-~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        112 RNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINM-KDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             CCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCc-cCCCCCCCHHHHHHhCCCHHHHHHH
Confidence            999999999987544322111   1111111112  234699999999998874 4444 99999999999999999999


Q ss_pred             HhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc-CCHHHHHHHHhcCCCCcccc
Q 005931          162 LEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN-GRVKILVAFLSSSPASFDRL  240 (669)
Q Consensus       162 l~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~-g~~e~v~~LL~~~~~~i~~~  240 (669)
                      ++.+.+. +..|..|.||||.|+..|+.+++++|++.|++++.. |..|.||||+|+.. ++.++++.|+.. +++++..
T Consensus       188 l~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~-d~~g~TpLh~A~~~~~~~~iv~~Ll~~-gadvn~~  264 (477)
T PHA02878        188 LSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLEH-GVDVNAK  264 (477)
T ss_pred             HHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhcCCHHHHHHHHHc-CCCCCcc
Confidence            9998875 778999999999999999999999999999999986 99999999999976 689998877765 5788888


Q ss_pred             cC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHh----cCcccccccCCCC
Q 005931          241 TT-YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK-NYQFVEYIIKE----TVLDIYCRNHKNQ  314 (669)
Q Consensus       241 d~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~-~~~iv~~Ll~~----~~~d~~~~n~~g~  314 (669)
                      +. .|.||||+|  .++.+++++|++.  ++++|.+|.+|+||||+|+..+ ..+++++|+.+    ...+++.+|..|.
T Consensus       265 ~~~~g~TpLh~A--~~~~~~v~~Ll~~--gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~  340 (477)
T PHA02878        265 SYILGLTALHSS--IKSERKLKLLLEY--GADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGF  340 (477)
T ss_pred             CCCCCCCHHHHH--ccCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHH
Confidence            75 899999999  5778999999996  7789999999999999999854 56777777743    3457777777777


Q ss_pred             CHH
Q 005931          315 TAL  317 (669)
Q Consensus       315 T~L  317 (669)
                      ++-
T Consensus       341 ~~n  343 (477)
T PHA02878        341 IDN  343 (477)
T ss_pred             HHH
Confidence            653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-32  Score=296.07  Aligned_cols=243  Identities=22%  Similarity=0.267  Sum_probs=174.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCC
Q 005931           41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGH  120 (669)
Q Consensus        41 ~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  120 (669)
                      +++||.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|++.|++.... +..             
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~-------------   67 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK-YPD-------------   67 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc-CCC-------------
Confidence            4566666666666666666666555 4555555666666666666666666666655543221 233             


Q ss_pred             HHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC
Q 005931          121 LDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK  200 (669)
Q Consensus       121 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~  200 (669)
                                           +.||||.|+..|+.++++.|++.+.......+.+|.||||+|+..|+.+++++|+++|+
T Consensus        68 ---------------------~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga  126 (413)
T PHA02875         68 ---------------------IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA  126 (413)
T ss_pred             ---------------------cccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence                                 44555555555555555555555554444456678888888888888888888888888


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCC
Q 005931          201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGN  280 (669)
Q Consensus       201 ~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~  280 (669)
                      +++.. +.+|.||||+|+..|+.++++.|+.. +.+++..|..|.||||+|+..|+.+++++|++.  +.+++..+..|.
T Consensus       127 d~~~~-~~~g~tpLh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~--ga~~n~~~~~~~  202 (413)
T PHA02875        127 DPDIP-NTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS--GANIDYFGKNGC  202 (413)
T ss_pred             CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCcCCCCCC
Confidence            88765 77888888888888888887777755 467888888888999999999999999998886  567777777764


Q ss_pred             -cHHHHHHHcCCHHHHHHHHHhcCcccccc---cCCCCCHHHHHHHcC
Q 005931          281 -TVLHLAVLRKNYQFVEYIIKETVLDIYCR---NHKNQTALDIIEQAG  324 (669)
Q Consensus       281 -TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~---n~~g~T~L~~a~~~~  324 (669)
                       ||+|+|+..++.+++++|+ +.|+|++..   +..+.||++++....
T Consensus       203 ~t~l~~A~~~~~~~iv~~Ll-~~gad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        203 VAALCYAIENNKIDIVRLFI-KRGADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             chHHHHHHHcCCHHHHHHHH-HCCcCcchHhhcCCCchHHHHHHHhhc
Confidence             7888899999999999999 778888765   577889999876544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8e-33  Score=277.18  Aligned_cols=217  Identities=29%  Similarity=0.421  Sum_probs=188.9

Q ss_pred             HHHHHHhCCHHHHHHHHcCcch-hh--hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccc--------cccCCCCCcH
Q 005931            9 LSEAIVRNDKQALINLVGCSNK-RI--LLQRDASLNTALHLAARFGHVELVTEITKLCPELV--------AAENEKLETP   77 (669)
Q Consensus         9 L~~Ai~~gd~~~l~~ll~~~~~-~~--l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~--------~~~n~~g~Tp   77 (669)
                      .++|++.|.+..+..++..... .+  +-..+.+|.|||-+||++||.++|++|++.+...+        +-.+..|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            4689999999999998873221 12  23337788899999999999999999999643212        2234578899


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHH
Q 005931           78 LHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDI  157 (669)
Q Consensus        78 Lh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~i  157 (669)
                      |-.|+..||+++||.|+++|++++.. .....|||-.||.-|+.|+|++|++++++.+ ..+..|.|.|++|+..|+.++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~t-T~TNStPLraACfDG~leivKyLvE~gad~~-IanrhGhTcLmIa~ykGh~~I  165 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDT-TRTNSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHTCLMIACYKGHVDI  165 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccc-cccCCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCeeEEeeeccCchHH
Confidence            99999999999999999999888765 6677799999999999999999999999987 678889999999999999999


Q ss_pred             HHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931          158 AREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL  230 (669)
Q Consensus       158 v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL  230 (669)
                      +++|++.+.+. +.++..|+|+||.|+..|+++++++|+++|+.+..  |..|.|||..|+..|+.+++..|+
T Consensus       166 ~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~--d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  166 AQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV--DGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             HHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCceeee--cCCCCchHHHHhhhcchHHHHHHh
Confidence            99999999986 78899999999999999999999999999998875  788999999999999999988887

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.3e-32  Score=302.02  Aligned_cols=206  Identities=17%  Similarity=0.148  Sum_probs=160.4

Q ss_pred             HHHHHHHHcCcchhhhcccCCCCChHHHHHHHc---CCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHH----HH
Q 005931           18 KQALINLVGCSNKRILLQRDASLNTALHLAARF---GHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE----VS   90 (669)
Q Consensus        18 ~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~---g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~e----iv   90 (669)
                      ++.+++++.  ++...+.+|.+|+||||+||..   |+.++|++|++.|++ ++..+..|.||||+|+..|+.+    ++
T Consensus        12 ~~~~~~l~~--~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~~~v~~~~~   88 (661)
T PHA02917         12 LDELKQMLR--DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRHVKVNKDIA   88 (661)
T ss_pred             HHHHHHHHh--ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCChhHHHHHH
Confidence            567888886  3455688899999999998665   889999999999998 6788999999999999999854    55


Q ss_pred             HHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHhcCCcc
Q 005931           91 AFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAI--SRGHTDIAREILEVRPRF  168 (669)
Q Consensus        91 k~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~--~~g~~~iv~~Ll~~~~~~  168 (669)
                      +.|++.+.....  + +..+++++|+.+++.++|++|++++.+.+ ..+..|.||||.|+  ..|+.+++++|++++.+.
T Consensus        89 ~~Ll~~~~~~n~--~-~~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v  164 (661)
T PHA02917         89 MALLEATGYSNI--N-DFNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV  164 (661)
T ss_pred             HHHHhccCCCCC--C-CcchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc
Confidence            777776433211  1 12367788888889999999999988877 56667889998543  467899999999988775


Q ss_pred             cC--CCCCCC-----------ChHHHHHHh-----------cCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH-
Q 005931          169 AG--KTDKNG-----------FSPLHYASS-----------IGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV-  223 (669)
Q Consensus       169 ~~--~~d~~g-----------~t~Lh~Aa~-----------~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~-  223 (669)
                      ..  ..+..|           .||||+|+.           .++.+++++|+++|++++.. |.+|.||||+|+.+|+. 
T Consensus       165 n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~-d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        165 LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI-DKNYCTALQYYIKSSHID  243 (661)
T ss_pred             cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccC-CCCCCcHHHHHHHcCCCc
Confidence            31  112233           599999875           45789999999999998876 88899999999998885 


Q ss_pred             -HHHHHHHh
Q 005931          224 -KILVAFLS  231 (669)
Q Consensus       224 -e~v~~LL~  231 (669)
                       ++++.|+.
T Consensus       244 ~eivk~Li~  252 (661)
T PHA02917        244 IDIVKLLMK  252 (661)
T ss_pred             HHHHHHHHh
Confidence             67777753

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.5e-32  Score=272.32  Aligned_cols=214  Identities=14%  Similarity=0.109  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcC
Q 005931           51 GHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ  130 (669)
Q Consensus        51 g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~  130 (669)
                      ++.+++++|++.++.   ..|..|.||||+|+..|+.+++++|++.|++....   ++.||||+|+..|+.+++++|++.
T Consensus        10 ~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791         10 KSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             CHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHC
Confidence            445555555555442   34555566666666666666666666555543321   234555555555555555555544


Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCC-ChHHHHHHhcCCHHHHHHHHhcCCccccccCCC
Q 005931          131 SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG-FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD  209 (669)
Q Consensus       131 ~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~  209 (669)
                      +.+.+ ..+..|.||||+|+..|+.++++.|++.+.+. +..+..| .||||+|+..|+.+++++|++++++...  ...
T Consensus        84 Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~~~  159 (284)
T PHA02791         84 GMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAI  159 (284)
T ss_pred             CCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--ccc
Confidence            44332 23333444444444444444444444444332 2223333 2444444444444444444444332110  012


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcH-HHHHHHcCCHHHHHHHHHhcCCCCCccCCC
Q 005931          210 GYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETV-FHLAVRFDKYNAFKFLAESFNTCLFHGQDQ  277 (669)
Q Consensus       210 g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~-Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~  277 (669)
                      |.||||+|+.+|+.++++.|+.. +++++..|..|.|| ||+|+.+|+.+++++|++.  ++++|.+|.
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~-gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~--Ga~in~~~~  225 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY--DINIYSVNL  225 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC--CCCCccCcc
Confidence            34444444444444444333332 23344444444433 4444444444444444443  333344444

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=291.41  Aligned_cols=219  Identities=19%  Similarity=0.230  Sum_probs=159.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN   86 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~   86 (669)
                      ..|+.|+..|+.+.++.|++ . +...+.++..|.||||+|+..|+.+++++|++.|++ ++..+..+.||||.|+..|+
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~-~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          4 VALCDAILFGELDIARRLLD-I-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHH-C-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHHHHHHHCCC
Confidence            35999999999999999998 3 345677788999999999999999999999999987 67778889999999999999


Q ss_pred             HHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 005931           87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRP  166 (669)
Q Consensus        87 ~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~  166 (669)
                      .+++++|++.|+......+..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..|+.++++.|++.+.
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~  159 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDIKGIELLIDHKA  159 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            9999999999987766656778888888888888888888888776654 344445666666666666666666666555


Q ss_pred             cccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931          167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL  230 (669)
Q Consensus       167 ~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL  230 (669)
                      +. +..|..|.||||+|+..|+.+++++|+++|++++...+..+.||+|+|+..|+.++++.|+
T Consensus       160 ~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll  222 (413)
T PHA02875        160 CL-DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI  222 (413)
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence            43 4445556666666666666666666666655555441222234444455444444444443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.5e-32  Score=310.57  Aligned_cols=318  Identities=27%  Similarity=0.379  Sum_probs=190.9

Q ss_pred             HHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931            9 LSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE   88 (669)
Q Consensus         9 L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~e   88 (669)
                      ++.|+.++.++.++-++.  .+..+..+|..|-||||.|+..|+.+++++++..+.. ++..+..|.||+|.||+.+..+
T Consensus       213 l~~a~~~nri~~~eLll~--~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~-~~~~~vr~~tplh~AA~~~~~e  289 (1143)
T KOG4177|consen  213 LHIACKKNRIKVVELLLK--HGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGAS-VNVSTVRGETPLHMAARAGQVE  289 (1143)
T ss_pred             hhhhccccccceeeeeee--ccCcCCcccccCccHHHHHHhccchhHHHHHHhcccc-cCcccccccCcchhhhccchhh
Confidence            555555555555554444  2244455555555555555555555555555555544 4445555555555555555555


Q ss_pred             HHHHHHhhCCccccc--------------------------------cCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccc
Q 005931           89 VSAFLMEANPTVATK--------------------------------LNHESQSAFSLACRQGHLDVVKLLINQSWLMEF  136 (669)
Q Consensus        89 ivk~Ll~~~~~~~~~--------------------------------~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~  136 (669)
                      ++++|+++|.++...                                .+..|.+|+|+++..++.++..+|...+.... 
T Consensus       290 ~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~-  368 (1143)
T KOG4177|consen  290 VCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRR-  368 (1143)
T ss_pred             hHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccC-
Confidence            555555554443222                                12223333333333333332222222222111 


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcc--------------------------------cCCCCCCCChHHHHHH
Q 005931          137 EEDSVESTPIYLAISRGHTDIAREILEVRPRF--------------------------------AGKTDKNGFSPLHYAS  184 (669)
Q Consensus       137 ~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~--------------------------------~~~~d~~g~t~Lh~Aa  184 (669)
                      ..+..+.+|+|.|+..|..+.++.++..+...                                .+..+..|.||+|.|+
T Consensus       369 ~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  369 QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAA  448 (1143)
T ss_pred             cccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhh
Confidence            12222344444444444444444444433321                                1334555566666666


Q ss_pred             hcC-CHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcC------------------------------
Q 005931          185 SIG-NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS------------------------------  233 (669)
Q Consensus       185 ~~g-~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~------------------------------  233 (669)
                      ..| ..+....+++.+.+++.. ...|.||||+|+..|+.+++..+++..                              
T Consensus       449 ~~g~~~~~~~~l~~~g~~~n~~-s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~  527 (1143)
T KOG4177|consen  449 KKGRYLQIARLLLQYGADPNAV-SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILL  527 (1143)
T ss_pred             hcccHhhhhhhHhhcCCCcchh-ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHh
Confidence            666 556666666666666654 566777777777777766655555322                              


Q ss_pred             --CCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccC
Q 005931          234 --PASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNH  311 (669)
Q Consensus       234 --~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~  311 (669)
                        +..++.++..|.||||.|+.+|+.++|++|+++  +.+++.+|+.|+||||.|+..|+.+|+++|+ +.|+++|+.|.
T Consensus       528 ~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~--gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLl-k~GA~vna~d~  604 (1143)
T KOG4177|consen  528 EHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH--GADVNAKDKLGYTPLHQAAQQGHNDIAELLL-KHGASVNAADL  604 (1143)
T ss_pred             hcCCceehhcccccchHHHHHhcCCchHHHHhhhC--CccccccCCCCCChhhHHHHcChHHHHHHHH-HcCCCCCcccc
Confidence              345667788888999999999999999999986  7788889999999999999999999999998 78889999999


Q ss_pred             CCCCHHHHHHHcCCCchHHHHHH
Q 005931          312 KNQTALDIIEQAGTNDDATSLKK  334 (669)
Q Consensus       312 ~g~T~L~~a~~~~~~~~~~~l~~  334 (669)
                      +|.|||++|...++.+....++.
T Consensus       605 ~g~TpL~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  605 DGFTPLHIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             cCcchhHHHHHhcccchhhHHHh
Confidence            99999999999888776655543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.4e-32  Score=271.61  Aligned_cols=222  Identities=22%  Similarity=0.282  Sum_probs=196.4

Q ss_pred             cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931           84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE  163 (669)
Q Consensus        84 ~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  163 (669)
                      .++.+++++|+++++.   ..|..|.||||+|+..|+.+++++|++.+.+.+. .  .+.||||.|+..|+.++++.|++
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~-~--d~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC-C--CCCCHHHHHHHCCCHHHHHHHHH
Confidence            5788999999999875   3588999999999999999999999999877653 2  36899999999999999999999


Q ss_pred             cCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-ChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 005931          164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDG-YTPLHLAAINGRVKILVAFLSSSPASFDRLTT  242 (669)
Q Consensus       164 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g-~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~  242 (669)
                      .+.+. +..|..|.||||+|+..|+.+++++|+++|++++.. +..| .||||+|+..|+.++++.|+...+...+.  .
T Consensus        83 ~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~-~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--~  158 (284)
T PHA02791         83 SGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--A  158 (284)
T ss_pred             CCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc--c
Confidence            88775 678999999999999999999999999999999875 6666 58999999999999999999876533221  3


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcH-HHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHH
Q 005931          243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTV-LHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDI  319 (669)
Q Consensus       243 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~Tp-Lh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~  319 (669)
                      .|.||||+|+++|+.+++++|++.  +++++.+|..|.|| ||+|+..|+.+++++|+ +.|+|++.+|..| |+|+.
T Consensus       159 ~g~TpLh~Aa~~g~~eiv~lLL~~--gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl-~~Ga~in~~~~~~-~~l~~  232 (284)
T PHA02791        159 ILLSCIHITIKNGHVDMMILLLDY--MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALF-KYDINIYSVNLEN-VLLDD  232 (284)
T ss_pred             cCccHHHHHHHcCCHHHHHHHHHC--CCCCCcccCCCCChHHHHHHHcCCHHHHHHHH-HCCCCCccCcccC-ccCCC
Confidence            589999999999999999999997  66889999999987 99999999999999999 7789999999955 77743

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-31  Score=290.04  Aligned_cols=327  Identities=15%  Similarity=0.115  Sum_probs=255.4

Q ss_pred             ccCHHHHHHHHhC--CHHHHHHHHcCcchhhhcccCCCCChHHHHHHH--cCCHHHHHHHHHhC-CccccccC-----CC
Q 005931            4 GMAQNLSEAIVRN--DKQALINLVGCSNKRILLQRDASLNTALHLAAR--FGHVELVTEITKLC-PELVAAEN-----EK   73 (669)
Q Consensus         4 ~m~~~L~~Ai~~g--d~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~--~g~~e~vk~Ll~~~-~~~~~~~n-----~~   73 (669)
                      |.+| ||.|+..|  +.++++.|++.......+..+..+++|||.++.  +++.++|++|++.+ .+ ++..+     ..
T Consensus        77 G~TP-Lh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~-~~~~~~~~~~~~  154 (672)
T PHA02730         77 GLTP-LGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIR-PSKNTNYYIHCL  154 (672)
T ss_pred             CCCh-HHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCC-hhhhhhhhcccc
Confidence            5677 99999977  799999999844334445678889999999999  99999999999744 34 33332     37


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCccc------cccCCCC-CcHHHHH------HHcCCHHHHHHHHcCCCccccccCC
Q 005931           74 LETPLHEACCQGNHEVSAFLMEANPTVA------TKLNHES-QSAFSLA------CRQGHLDVVKLLINQSWLMEFEEDS  140 (669)
Q Consensus        74 g~TpLh~Aa~~g~~eivk~Ll~~~~~~~------~~~~~~g-~tpL~~A------~~~g~~eiv~~Ll~~~~~~~~~~~~  140 (669)
                      |.+|+++|+..++.|+|++|+++|+++.      ...+... .|.||++      ..+++.|++++|+++|++.+ ..+.
T Consensus       155 ~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN-~kd~  233 (672)
T PHA02730        155 GLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIH-GRDE  233 (672)
T ss_pred             chhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCC-CCCC
Confidence            8999999999999999999999999984      1123333 4555533      35678999999999999887 6788


Q ss_pred             CCCcHHHH--HHHcCCHHHHHHHHh--------------------------------cCCcccCC---------------
Q 005931          141 VESTPIYL--AISRGHTDIAREILE--------------------------------VRPRFAGK---------------  171 (669)
Q Consensus       141 ~~~t~L~~--A~~~g~~~iv~~Ll~--------------------------------~~~~~~~~---------------  171 (669)
                      .|.||||+  +...++.|+++.|++                                ++.+. ..               
T Consensus       234 ~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~  312 (672)
T PHA02730        234 GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVM  312 (672)
T ss_pred             CCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhh
Confidence            89999995  555677999999998                                33322 11               


Q ss_pred             -----CCCCCCh---------------------HHHHHHhcC---CHHHHHHHHhcCCccccccCCCCChHHHHHHHcCC
Q 005931          172 -----TDKNGFS---------------------PLHYASSIG---NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR  222 (669)
Q Consensus       172 -----~d~~g~t---------------------~Lh~Aa~~g---~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~  222 (669)
                           .+..|.+                     .||.-.+.+   +.+++++|+++|++++.  +..|.||||+|+..++
T Consensus       313 ~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~--k~~G~TpLH~Aa~~nn  390 (672)
T PHA02730        313 RSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK--TTDNNYPLHDYFVNNN  390 (672)
T ss_pred             hccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc--CCCCCcHHHHHHHHcC
Confidence                 3455543                     566666644   68999999999999996  3789999999998875


Q ss_pred             ----HHHHHHHHhcCC-CCcccccCCCCcHHHH---HHHcC---------CHHHHHHHHHhcCCCCCccCCCCCCcHHHH
Q 005931          223 ----VKILVAFLSSSP-ASFDRLTTYGETVFHL---AVRFD---------KYNAFKFLAESFNTCLFHGQDQFGNTVLHL  285 (669)
Q Consensus       223 ----~e~v~~LL~~~~-~~i~~~d~~g~t~Lh~---Av~~~---------~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~  285 (669)
                          .++++.|++.++ .+++..|..|+||||.   |...+         ..+++++|+..  ++++|.+|..|+||||+
T Consensus       391 n~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~--GADINakD~~G~TPLh~  468 (672)
T PHA02730        391 NIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY--MDDIDMIDNENKTLLYY  468 (672)
T ss_pred             CcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc--ccchhccCCCCCCHHHH
Confidence                899999998765 4789999999999994   33332         23579999986  77899999999999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccccC-CCCCHHHHHHHcCCCchHHHHHHHHHHhCC
Q 005931          286 AVLRKNYQFVEYIIKETVLDIYCRNH-KNQTALDIIEQAGTNDDATSLKKLFKTAGN  341 (669)
Q Consensus       286 A~~~~~~~iv~~Ll~~~~~d~~~~n~-~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~  341 (669)
                      |+..++.+++++|+ +.|++++.+|. .|.|||+.|......  ...+.++|...|+
T Consensus       469 Aa~~~~~eive~LI-~~GAdIN~~d~~~g~TaL~~Aa~~~~~--~~eIv~~LLs~ga  522 (672)
T PHA02730        469 AVDVNNIQFARRLL-EYGASVNTTSRSIINTAIQKSSYRREN--KTKLVDLLLSYHP  522 (672)
T ss_pred             HHHhCCHHHHHHHH-HCCCCCCCCCCcCCcCHHHHHHHhhcC--cHHHHHHHHHcCC
Confidence            99999999999999 77899999997 599999999864211  2445566666653

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.2e-31  Score=292.14  Aligned_cols=290  Identities=15%  Similarity=0.169  Sum_probs=239.5

Q ss_pred             HHHHHHhCC---HHHHHHHHcCcchhhhcccCCCCChHHHHHHH--cCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931            9 LSEAIVRND---KQALINLVGCSNKRILLQRDASLNTALHLAAR--FGHVELVTEITKLCPELVAAENEKLETPLHEACC   83 (669)
Q Consensus         9 L~~Ai~~gd---~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~--~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~   83 (669)
                      ||.-+...+   ++.++.+++..+   .+.. ..+.|+++.+..  .++.++|++|++.|++ ++..|..|.||||.|+.
T Consensus         6 l~~y~~~~~~~~~~~v~~ll~~~~---~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpL~~~~~   80 (489)
T PHA02798          6 LYNYITFSDNVKLSTVKLLIKSCN---PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN-VNGLDNEYSTPLCTILS   80 (489)
T ss_pred             hHHHeeecCcccHHHHHHHHhcCC---hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC-CCCCCCCCCChHHHHHH
Confidence            777766554   778899998322   1222 446677764444  4589999999999998 88999999999999986


Q ss_pred             c-----CCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC---CHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCC-
Q 005931           84 Q-----GNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG---HLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH-  154 (669)
Q Consensus        84 ~-----g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g---~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~-  154 (669)
                      .     ++.+++++|+++|++++.. +..|.||||+|+..+   +.+++++|+++|++.+ ..+..|.||||.|+..++ 
T Consensus        81 n~~~~~~~~~iv~~Ll~~GadiN~~-d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~a~~~~~~  158 (489)
T PHA02798         81 NIKDYKHMLDIVKILIENGADINKK-NSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQVYLQSNHH  158 (489)
T ss_pred             hHHhHHhHHHHHHHHHHCCCCCCCC-CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCc
Confidence            4     6799999999999998765 889999999999986   7899999999999886 677889999999999988 


Q ss_pred             --HHHHHHHHhcCCcccCCCCCCCChHHHHHHhc----CCHHHHHHHHhcCCccccccCCCCChHHH-------HHHHcC
Q 005931          155 --TDIAREILEVRPRFAGKTDKNGFSPLHYASSI----GNVNMTKLLLNHNKDLALQYNKDGYTPLH-------LAAING  221 (669)
Q Consensus       155 --~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~----g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh-------~Aa~~g  221 (669)
                        .++++.|++.+.+.....+..|.||||.++..    ++.+++++|+++|++++.. +..|.++++       .+...+
T Consensus       159 ~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~-~~~~~~~~~~~l~~l~~~~~~~  237 (489)
T PHA02798        159 IDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKE-NKSHKKKFMEYLNSLLYDNKRF  237 (489)
T ss_pred             chHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccC-CccccchHHHHHHHHHhhcccc
Confidence              99999999999886444456789999988764    5799999999999999875 777788766       234556


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE  301 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~  301 (669)
                      +.+++..++. + .+++.+|..|+||||+|+.+++.+++++|++.  ++++|.+|..|+||||+|+..++.++++.|+ +
T Consensus       238 ~~~i~~~l~~-~-~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~--GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL-~  312 (489)
T PHA02798        238 KKNILDFIFS-Y-IDINQVDELGFNPLYYSVSHNNRKIFEYLLQL--GGDINIITELGNTCLFTAFENESKFIFNSIL-N  312 (489)
T ss_pred             hHHHHHHHHh-c-CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHc--CCcccccCCCCCcHHHHHHHcCcHHHHHHHH-c
Confidence            6777666554 3 78999999999999999999999999999996  7789999999999999999999999999999 6


Q ss_pred             cCcccccccC
Q 005931          302 TVLDIYCRNH  311 (669)
Q Consensus       302 ~~~d~~~~n~  311 (669)
                      .+.+++..+.
T Consensus       313 ~~~~~~~i~~  322 (489)
T PHA02798        313 KKPNKNTISY  322 (489)
T ss_pred             cCCCHHHHHH
Confidence            6667765443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.98  E-value=3.3e-32  Score=307.74  Aligned_cols=331  Identities=26%  Similarity=0.338  Sum_probs=266.4

Q ss_pred             HHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931            9 LSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE   88 (669)
Q Consensus         9 L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~e   88 (669)
                      ++.+...++.+.++.+++ . ....+..+.+|.||||+||..+..++++.++..+.+ +...|..|.||||.|+..|+.+
T Consensus       180 ~~~~~~~~~~~~~~ll~~-~-~~~~~a~~~~~~tpl~~a~~~nri~~~eLll~~gad-v~a~d~~gl~~lh~a~~~g~~~  256 (1143)
T KOG4177|consen  180 LHVAAHCGHARVAKLLLD-K-KADPNASALNGFTPLHIACKKNRIKVVELLLKHGAD-VSAKDESGLTPLHVAAFMGHLD  256 (1143)
T ss_pred             hhHHhhcchHHHHhhhhc-c-cCCccccccCCCCchhhhccccccceeeeeeeccCc-CCcccccCccHHHHHHhccchh
Confidence            467777888888887777 2 355678899999999999999999999999999998 8999999999999999999999


Q ss_pred             HHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCC----------------------------
Q 005931           89 VSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDS----------------------------  140 (669)
Q Consensus        89 ivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~----------------------------  140 (669)
                      ++.+|+.+|+..... +..|+||+|+|+..+..++.++|++++.+.. ..+.                            
T Consensus       257 i~~~l~~~ga~~~~~-~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~-~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~  334 (1143)
T KOG4177|consen  257 IVKLLLQHGASVNVS-TVRGETPLHMAARAGQVEVCKLLLQNGADVL-AKARDDQTPLHIASRLGHEEIVHLLLQAGATP  334 (1143)
T ss_pred             HHHHHHhcccccCcc-cccccCcchhhhccchhhhHhhhhccCcccc-cccccccChhhhhcccchHHHHHHHhhccCCc
Confidence            999999999998766 9999999999999999999999999986654 2222                            


Q ss_pred             -----CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccc----------
Q 005931          141 -----VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQ----------  205 (669)
Q Consensus       141 -----~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~----------  205 (669)
                           .+.+|+|+++..++.++...+....+.- ...+..|.+|+|.|+..|..+++++++..|++++..          
T Consensus       335 ~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~-~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~  413 (1143)
T KOG4177|consen  335 NAARTAGYTPLHLAAKEGQVEVAGALLEHGAQR-RQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHV  413 (1143)
T ss_pred             cccCcCCcccccHhhhhhhHHHHHHhhcccccc-CcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeee
Confidence                 3445555555555555554444444443 344667788888888888888888888888765543          


Q ss_pred             ----------------------cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHH
Q 005931          206 ----------------------YNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL  263 (669)
Q Consensus       206 ----------------------~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~L  263 (669)
                                            .+..|+||+|+|+..|.......++...+.+++.....|.||||+|+..|+.+++..|
T Consensus       414 aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~ll  493 (1143)
T KOG4177|consen  414 AAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLL  493 (1143)
T ss_pred             hhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHh
Confidence                                  2345788889888888433345666677889999999999999999999999999999


Q ss_pred             HHhc-------------------------------CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCC
Q 005931          264 AESF-------------------------------NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHK  312 (669)
Q Consensus       264 l~~~-------------------------------~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~  312 (669)
                      ++..                               .+..++.++..|+||||.|+.+|+.++|++|| +.|+|++++++.
T Consensus       494 le~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLL-e~gAdv~ak~~~  572 (1143)
T KOG4177|consen  494 LEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLL-EHGADVNAKDKL  572 (1143)
T ss_pred             hhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhh-hCCccccccCCC
Confidence            8732                               13456677899999999999999999999999 889999999999


Q ss_pred             CCCHHHHHHHcCCCchHHHHHHHHHHhCCCCCCCCCCc
Q 005931          313 NQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPP  350 (669)
Q Consensus       313 g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (669)
                      |+||||.|+..|+.+    +..+|.+.|+..+-...+.
T Consensus       573 G~TPLH~Aa~~G~~~----i~~LLlk~GA~vna~d~~g  606 (1143)
T KOG4177|consen  573 GYTPLHQAAQQGHND----IAELLLKHGASVNAADLDG  606 (1143)
T ss_pred             CCChhhHHHHcChHH----HHHHHHHcCCCCCcccccC
Confidence            999999999999554    4566677777665444333

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.4e-31  Score=236.44  Aligned_cols=200  Identities=27%  Similarity=0.391  Sum_probs=95.8

Q ss_pred             HHHHHhCCHHHHHHHHcCcchhhhccc-CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931           10 SEAIVRNDKQALINLVGCSNKRILLQR-DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE   88 (669)
Q Consensus        10 ~~Ai~~gd~~~l~~ll~~~~~~~l~~~-d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~e   88 (669)
                      ..+.......-++++++ ..+..++.+ |.+|+||||+||..|+.++|++|+....-.++.+|..|+||||.||..|+.|
T Consensus         8 ~~~~~~~~~~kveel~~-s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~e   86 (226)
T KOG4412|consen    8 KAICENCEEFKVEELIQ-SDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDE   86 (226)
T ss_pred             HHHHhhchHHHHHHHHh-cChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHH
Confidence            33444444445555555 333333333 3355555555555555555555554222224444555555555555555555


Q ss_pred             HHHHHHhh-CCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCc
Q 005931           89 VSAFLMEA-NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPR  167 (669)
Q Consensus        89 ivk~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~  167 (669)
                      +|+.|+.+ |++++.. +..|.|+||+|+..|..+++++|++++..+. ..|..|.||||-|+.-|..+++++|+..+..
T Consensus        87 vVk~Ll~r~~advna~-tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAAavGklkvie~Li~~~a~  164 (226)
T KOG4412|consen   87 VVKELLNRSGADVNAT-TNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAAAVGKLKVIEYLISQGAP  164 (226)
T ss_pred             HHHHHhcCCCCCccee-cCCCcceehhhhcCChhhHHHHHHhcCCCCc-ccccccCchhHHHHhccchhhHHHHHhcCCC
Confidence            55555555 4444333 4455555555555555555555555544333 3444444444444444444444444444433


Q ss_pred             ccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHH
Q 005931          168 FAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLH  215 (669)
Q Consensus       168 ~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh  215 (669)
                      . +..|..|+||||.|...|+.++..+|+++|++.... |++| ||+.
T Consensus       165 ~-n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~e-dke~-t~~~  209 (226)
T KOG4412|consen  165 L-NTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRE-DKEG-TALR  209 (226)
T ss_pred             C-CcccccCccHHHHHHhccCchHHHHHHHhccceeec-cccC-chHH
Confidence            2 444444444444444444444444444444444433 4444 4433

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.8e-31  Score=235.79  Aligned_cols=206  Identities=28%  Similarity=0.322  Sum_probs=155.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHcCCC-ccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCC
Q 005931          110 SAFSLACRQGHLDVVKLLINQSW-LMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN  188 (669)
Q Consensus       110 tpL~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~  188 (669)
                      ++.+.+|......-++-+++... ..+...+.+|+||||+||+.|+.+++.+|+......++..|..||||||.||+.|+
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            44445555544444554544433 23333344566777777777777777777754444456668888888888888888


Q ss_pred             HHHHHHHHhc-CCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931          189 VNMTKLLLNH-NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF  267 (669)
Q Consensus       189 ~eiv~~Ll~~-g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~  267 (669)
                      .++|+.|+.+ |++++.. ++.|.|+||+|+.+|+.++.+.|+..+ +.++.+|..|.||||-|+.-|+.+++++|+.. 
T Consensus        85 ~evVk~Ll~r~~advna~-tn~G~T~LHyAagK~r~eIaqlLle~g-a~i~~kD~~~qtplHRAAavGklkvie~Li~~-  161 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVNAT-TNGGQTCLHYAAGKGRLEIAQLLLEKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ-  161 (226)
T ss_pred             HHHHHHHhcCCCCCccee-cCCCcceehhhhcCChhhHHHHHHhcC-CCCcccccccCchhHHHHhccchhhHHHHHhc-
Confidence            8888888888 8888876 888888888888888888876666555 88888888888899988888888899988876 


Q ss_pred             CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHH
Q 005931          268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIE  321 (669)
Q Consensus       268 ~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~  321 (669)
                       +..+|.+|..|+||||.|...++.++..+|+ ..|+|++..|+.| ||+.++.
T Consensus       162 -~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV-~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  162 -GAPLNTQDKYGFTPLHHALAEGHPDVAVLLV-RAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             -CCCCCcccccCccHHHHHHhccCchHHHHHH-HhccceeeccccC-chHHHHH
Confidence             5678888999999999997778888888888 5568999999988 8887764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.2e-30  Score=284.18  Aligned_cols=269  Identities=20%  Similarity=0.223  Sum_probs=228.4

Q ss_pred             CHHHHHHHHHhCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc-----CCHHHH
Q 005931           52 HVELVTEITKLCPELVAAENEKLETPLHEAC--CQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ-----GHLDVV  124 (669)
Q Consensus        52 ~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa--~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~-----g~~eiv  124 (669)
                      ..+.|+.|++.+.. .+.  ..|.|+++.+.  ..++.++|++|+++|++++.. +..|.||||.|+.+     ++.+++
T Consensus        17 ~~~~v~~ll~~~~~-~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         17 KLSTVKLLIKSCNP-NEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGL-DNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             cHHHHHHHHhcCCh-hhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCC-CCCCCChHHHHHHhHHhHHhHHHHH
Confidence            47899999987532 222  45778776444  345899999999999998765 89999999999865     678999


Q ss_pred             HHHHcCCCccccccCCCCCcHHHHHHHcC---CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCC---HHHHHHHHhc
Q 005931          125 KLLINQSWLMEFEEDSVESTPIYLAISRG---HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN---VNMTKLLLNH  198 (669)
Q Consensus       125 ~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g---~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~---~eiv~~Ll~~  198 (669)
                      ++|+++|++.+ ..+..|.||||+|+..+   +.+++++|++.+.+. +..|.+|.||||+|+..|+   .+++++|+++
T Consensus        93 ~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~  170 (489)
T PHA02798         93 KILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK  170 (489)
T ss_pred             HHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHh
Confidence            99999999887 56778999999999876   789999999999885 7889999999999999988   9999999999


Q ss_pred             CCccccccCCCCChHHHHHHHc----CCHHHHHHHHhcCCCCcccccCCCCcHHH-------HHHHcCCHHHHHHHHHhc
Q 005931          199 NKDLALQYNKDGYTPLHLAAIN----GRVKILVAFLSSSPASFDRLTTYGETVFH-------LAVRFDKYNAFKFLAESF  267 (669)
Q Consensus       199 g~~~~~~~~~~g~tpLh~Aa~~----g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh-------~Av~~~~~~iv~~Ll~~~  267 (669)
                      |++++...+..|.||||.++..    ++.++++.|++. |.+++..+..|+++++       .+...+..+++++|+.  
T Consensus       171 gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~-Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--  247 (489)
T PHA02798        171 GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN-GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--  247 (489)
T ss_pred             CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC-CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh--
Confidence            9999887567899999998764    478988888765 4788888888999877       2445677889998876  


Q ss_pred             CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHH
Q 005931          268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATS  331 (669)
Q Consensus       268 ~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~  331 (669)
                       +.++|.+|..|+||||+|+..++.+++++|+ +.|+|++.+|..|+|||++|...++.+....
T Consensus       248 -~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL-~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~  309 (489)
T PHA02798        248 -YIDINQVDELGFNPLYYSVSHNNRKIFEYLL-QLGGDINIITELGNTCLFTAFENESKFIFNS  309 (489)
T ss_pred             -cCCCCCcCcCCccHHHHHHHcCcHHHHHHHH-HcCCcccccCCCCCcHHHHHHHcCcHHHHHH
Confidence             4789999999999999999999999999999 7889999999999999999999887554433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=6.1e-29  Score=260.66  Aligned_cols=208  Identities=27%  Similarity=0.332  Sum_probs=176.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHcC-CCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCC
Q 005931          110 SAFSLACRQGHLDVVKLLINQ-SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN  188 (669)
Q Consensus       110 tpL~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~  188 (669)
                      .-++.|++.|..+.|+.|++. +.+.+ ..|..|.|+||+|+.+++.+++++|++++.+....-..-+.||||+|+++|+
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~-~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVN-NPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCC-CCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            445667777777777777766 44443 5556677788888888888888888888777644433668899999999999


Q ss_pred             HHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931          189 VNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN  268 (669)
Q Consensus       189 ~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~  268 (669)
                      +.+|.+|+++|++++.. |.+|.+|+|+|+..|+.-++.++|.+. .+++.+|.+|+||||+|+.++....+..|++.  
T Consensus       125 ~~vv~lLlqhGAdpt~~-D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f--  200 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLK-DKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF--  200 (600)
T ss_pred             HHHHHHHHHcCCCCcee-cCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh--
Confidence            99999999999999987 999999999999999999999999887 89999999999999999999998888888886  


Q ss_pred             CCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHc
Q 005931          269 TCLFHGQD-QFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQA  323 (669)
Q Consensus       269 ~~~in~~D-~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~  323 (669)
                      +..++..| ++|+||||+|+..|+..++. |+.++|++.+.+|.+|.||+++|.+.
T Consensus       201 ~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  201 GASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            55666666 99999999999999999999 66699999999999999999999776

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.6e-27  Score=257.89  Aligned_cols=279  Identities=14%  Similarity=0.119  Sum_probs=197.8

Q ss_pred             ccCCCCChHHHH-HHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH-cCCHHHHHHHHhhCCcccc----------
Q 005931           35 QRDASLNTALHL-AARFGHVELVTEITKLCPELVAAENEKLETPLHEACC-QGNHEVSAFLMEANPTVAT----------  102 (669)
Q Consensus        35 ~~d~~g~T~Lh~-Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~-~g~~eivk~Ll~~~~~~~~----------  102 (669)
                      ..+-+|.+++|+ |+..|+.|+|++|+++|++ ++.++..|.||+|+|+. .|+.|++++|++.|++...          
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAd-vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~  144 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISKGLE-INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIII  144 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHcCCC-cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhh
Confidence            345555666665 4446677777777777776 56666667777777754 5777777777777764210          


Q ss_pred             -------------------------ccCCCCCcHHHHHHHcC-------CHHHHHHHHcCCCccccccCCCCCcHHHHHH
Q 005931          103 -------------------------KLNHESQSAFSLACRQG-------HLDVVKLLINQSWLMEFEEDSVESTPIYLAI  150 (669)
Q Consensus       103 -------------------------~~~~~g~tpL~~A~~~g-------~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~  150 (669)
                                               ..+..|.||||+|+.++       +.|+++.|++++.... ..+..|.||||+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-~~d~~g~t~l~~~~  223 (631)
T PHA02792        145 EQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-YYTYREHTTLYYYV  223 (631)
T ss_pred             hhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-ccCCCCChHHHHHH
Confidence                                     12345777777777777       6777777777776655 44555777777777


Q ss_pred             HcC--CHHHHHHHHhcCCcccC------------------CCCC-------CCCh-------------------------
Q 005931          151 SRG--HTDIAREILEVRPRFAG------------------KTDK-------NGFS-------------------------  178 (669)
Q Consensus       151 ~~g--~~~iv~~Ll~~~~~~~~------------------~~d~-------~g~t-------------------------  178 (669)
                      .+.  ..|+++.|++.......                  ..|.       .|.+                         
T Consensus       224 ~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  303 (631)
T PHA02792        224 DKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYT  303 (631)
T ss_pred             HcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHh
Confidence            777  66666666653110000                  0000       0111                         


Q ss_pred             -----HHHHHHhcC--CHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC--CcHHH
Q 005931          179 -----PLHYASSIG--NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYG--ETVFH  249 (669)
Q Consensus       179 -----~Lh~Aa~~g--~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g--~t~Lh  249 (669)
                           .||.-.+.+  +.+++++|+++|++..   ......+++.|+.+|+.++++.|++. |++++..|.+|  .||||
T Consensus       304 ~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh  379 (631)
T PHA02792        304 DSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLF  379 (631)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHH
Confidence                 133333334  5789999999999875   22356679999999999998888776 58899888775  69999


Q ss_pred             HHHHcCCHH---HHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHH
Q 005931          250 LAVRFDKYN---AFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQ  322 (669)
Q Consensus       250 ~Av~~~~~~---iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~  322 (669)
                      +|......+   ++++|++.  ++++|.+|..|.||||+|+..++.+++++|+ +.|+|++.+|..|.|||++|..
T Consensus       380 ~A~~n~~~~v~~IlklLIs~--GADIN~kD~~G~TPLh~Aa~~~n~eivelLL-s~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        380 PTLSIHESDVLSILKLCKPY--IDDINKIDKHGRSILYYCIESHSVSLVEWLI-DNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHhccHhHHHHHHHHHhc--CCccccccccCcchHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHH
Confidence            988776654   57777875  6789999999999999999999999999999 6689999999999999999976

>PF13962 PGG: Domain of unknown function

Probab=99.96  E-value=1.2e-28  Score=214.23  Aligned_cols=112  Identities=37%  Similarity=0.644  Sum_probs=99.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhccccCCCccCCCCCCCCccccCCCc-cceeehhhhhHHHHHHHHHHHHHHhcccch
Q 005931          464 REALQNARNTIILVAILIATVTYTGGISPPGGVYQEGPLKGKSLVGRTK-AFKIFEISNNIALFTSLSIVIILVSIIPFE  542 (669)
Q Consensus       464 ~~~~~~~~~~~~~va~liatvtf~a~~~~Pgg~~~~~~~~g~~~~~~~~-~f~~F~~~~~~a~~~S~~~~~~l~~~~~~~  542 (669)
                      +||++++||+++||||||||||||||+|||||+|||+++.|+|++.+++ .|.+|+++|++||++|+++++++++.....
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~   80 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDF   80 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            4789999999999999999999999999999999987678999998777 999999999999999999999998534222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005931          543 RKKLMRLLVITHKVMWVSISFMATAYIAATRIT  575 (669)
Q Consensus       543 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~  575 (669)
                      .+..++.+.+++.+||+++.+|++||++|+++|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            445556788888899999999999999999875

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=251.00  Aligned_cols=210  Identities=27%  Similarity=0.361  Sum_probs=173.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHh-CCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC
Q 005931           41 NTALHLAARFGHVELVTEITKL-CPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG  119 (669)
Q Consensus        41 ~T~Lh~Aa~~g~~e~vk~Ll~~-~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  119 (669)
                      .+.++.|+++|.++-|+.|++. +.+ ++..|.+|.|+||+||.+++.+++++|+++|++++..-..-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~-v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGES-VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcC-CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            4567788888888888888887 444 77778888888888888888888888888888887775577788888888888


Q ss_pred             CHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcC
Q 005931          120 HLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN  199 (669)
Q Consensus       120 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g  199 (669)
                      +..+|++|+++|+++. ..|..|.+|+|.|++.|+.-++-+++.++.+ ++.+|.+|+||||+|+.+|+...+..|++.+
T Consensus       124 ~~~vv~lLlqhGAdpt-~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPT-LKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHcCCCCc-eecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            8888888888888876 5677788888888888888888888888744 5788888888888888888877788888888


Q ss_pred             CccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHc
Q 005931          200 KDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRF  254 (669)
Q Consensus       200 ~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~  254 (669)
                      +++....+.+|.||||+|+..|+..++. |+.+.+.+.+..|.+|+||+.+|...
T Consensus       202 a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  202 ASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            8888876688888888888888888887 77788888888888888888888766

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=7.7e-27  Score=234.41  Aligned_cols=81  Identities=28%  Similarity=0.313  Sum_probs=71.8

Q ss_pred             cccCCCCcHHHHHHHcC-------------CHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc
Q 005931          239 RLTTYGETVFHLAVRFD-------------KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLD  305 (669)
Q Consensus       239 ~~d~~g~t~Lh~Av~~~-------------~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d  305 (669)
                      .+.++|.|+||+|+..+             +..+++.|++.  +.++|.+|.+||||||+|+++....++..|+ +.|+.
T Consensus       477 pr~~~~ft~LH~av~~~tt~~gry~v~~fPs~~V~k~Llec--gadvna~D~~~ntplHIa~~~~~~si~~aLi-e~Gah  553 (615)
T KOG0508|consen  477 PRGKNGFTLLHLAVDKNTTNVGRYPVCRFPSAHVTKVLLEC--GADVNARDFDNNTPLHIAAQNNCPSIVNALI-EAGAH  553 (615)
T ss_pred             ccccCCCchhhhhhccCCCCCCcccccCCcHHHHHHHHHHc--CCCCCcccCCCCchhHHHHHhccHHHHHHHH-Hcccc
Confidence            45678999999999653             24688999997  7899999999999999999999999999999 89999


Q ss_pred             cccccCCCCCHHHHHHH
Q 005931          306 IYCRNHKNQTALDIIEQ  322 (669)
Q Consensus       306 ~~~~n~~g~T~L~~a~~  322 (669)
                      .+++|..|.|++++...
T Consensus       554 ~datN~~~~t~~~ll~~  570 (615)
T KOG0508|consen  554 LDATNAHKKTALDLLDE  570 (615)
T ss_pred             hhhhhhccccHHHHhch
Confidence            99999999999997544

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.5e-26  Score=250.34  Aligned_cols=286  Identities=8%  Similarity=0.085  Sum_probs=225.3

Q ss_pred             cCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHH-cCCHHHHHHHHHhCCc------------------
Q 005931            5 MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAAR-FGHVELVTEITKLCPE------------------   65 (669)
Q Consensus         5 m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~-~g~~e~vk~Ll~~~~~------------------   65 (669)
                      .++-=+-|...|++|.++.|++ + +..++.++..|.|+||+|+. .|+.|++++|++.|++                  
T Consensus        72 ~~~~~~~~s~n~~lElvk~LI~-~-GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~  149 (631)
T PHA02792         72 FDIFEYLCSDNIDIELLKLLIS-K-GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITR  149 (631)
T ss_pred             ccHHHHHHHhcccHHHHHHHHH-c-CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccc
Confidence            3443466788999999999999 3 57788888889999999976 6999999999999864                  


Q ss_pred             -----------------cccccCCCCCcHHHHHHHcC-------CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC--
Q 005931           66 -----------------LVAAENEKLETPLHEACCQG-------NHEVSAFLMEANPTVATKLNHESQSAFSLACRQG--  119 (669)
Q Consensus        66 -----------------~~~~~n~~g~TpLh~Aa~~g-------~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--  119 (669)
                                       ..+..|..|.||||+|+.++       +.|++++|+++|+++... +..|.||||+|+.+.  
T Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~-d~~g~t~l~~~~~~~~i  228 (631)
T PHA02792        150 AEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY-TYREHTTLYYYVDKCDI  228 (631)
T ss_pred             ccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc-CCCCChHHHHHHHcccc
Confidence                             12345667999999999999       899999999999998876 888999999999999  


Q ss_pred             CHHHHHHHHcCCCcccc------------------ccC---------CCC----------------------------Cc
Q 005931          120 HLDVVKLLINQSWLMEF------------------EED---------SVE----------------------------ST  144 (669)
Q Consensus       120 ~~eiv~~Ll~~~~~~~~------------------~~~---------~~~----------------------------~t  144 (669)
                      ..|++++|++.......                  ..|         +.+                            +-
T Consensus       229 ~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~  308 (631)
T PHA02792        229 KREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQD  308 (631)
T ss_pred             hHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHH
Confidence            88999999875321000                  000         000                            11


Q ss_pred             HHHHHHHcC--CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCC--CChHHHHHHHc
Q 005931          145 PIYLAISRG--HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD--GYTPLHLAAIN  220 (669)
Q Consensus       145 ~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~--g~tpLh~Aa~~  220 (669)
                      .||.-...+  +.+++++|++.+....   .......++.|+..|+.+++++|+++|++++.. |.+  +.||||.|+..
T Consensus       309 ~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~k-D~~g~~~TpLh~A~~n  384 (631)
T PHA02792        309 LLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVVVED-DDNIINIMPLFPTLSI  384 (631)
T ss_pred             HHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhh-cCCCCChhHHHHHHHh
Confidence            233444444  5788999999888753   123556799999999999999999999999875 665  46999998877


Q ss_pred             CCHHH--HHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHH---cCC----
Q 005931          221 GRVKI--LVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVL---RKN----  291 (669)
Q Consensus       221 g~~e~--v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~---~~~----  291 (669)
                      ...+.  +..++...+++++.+|..|+||||+|+..++.+++++|+++  +++++.+|..|+||||+|+.   .++    
T Consensus       385 ~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~--GADIN~kD~~G~TpL~~A~~~~~~~~~~i~  462 (631)
T PHA02792        385 HESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDN--GADINITTKYGSTCIGICVILAHACIPEIA  462 (631)
T ss_pred             ccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHHHhcccHHHH
Confidence            66543  23344566689999999999999999999999999999997  77899999999999999976   222    


Q ss_pred             ---HHHHHHHH
Q 005931          292 ---YQFVEYII  299 (669)
Q Consensus       292 ---~~iv~~Ll  299 (669)
                         .+++++|+
T Consensus       463 ~~~~~il~lLL  473 (631)
T PHA02792        463 ELYIKILEIIL  473 (631)
T ss_pred             HHHHHHHHHHH
Confidence               35577777

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.6e-24  Score=209.78  Aligned_cols=176  Identities=16%  Similarity=0.259  Sum_probs=151.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcC--CHHHHHHHHhcCCccccccCCCCChHHHHHH
Q 005931          141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG--NVNMTKLLLNHNKDLALQYNKDGYTPLHLAA  218 (669)
Q Consensus       141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g--~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa  218 (669)
                      .+.+||+.|+..|+.++++.|++.    .+..|..|.||||+|+..+  +.+++++|+++|++++...+..|.||||+|+
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            357899999999999999999875    3456888999999999754  8999999999999999873468999999987


Q ss_pred             Hc---CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHH--cCCHHHHHHHHHhcCCCCCccCCCCCCcHHHH-HHHcCCH
Q 005931          219 IN---GRVKILVAFLSSSPASFDRLTTYGETVFHLAVR--FDKYNAFKFLAESFNTCLFHGQDQFGNTVLHL-AVLRKNY  292 (669)
Q Consensus       219 ~~---g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~--~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~-A~~~~~~  292 (669)
                      ..   ++.++++.|+. .+++++.+|..|+||||+|+.  .++.+++++|++.  +.+++.+|.+|+||||. |+..++.
T Consensus        96 ~~~~~~~~eiv~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~--gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         96 SFNKNVEPEILKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS--GVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HhCccccHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc--CCCcccccCCCCcHHHHHHHhcCCH
Confidence            63   47888877775 568999999999999999986  4689999999986  67889999999999996 5667899


Q ss_pred             HHHHHHHHhcCcccccccCCCCCHHHHHHHcC
Q 005931          293 QFVEYIIKETVLDIYCRNHKNQTALDIIEQAG  324 (669)
Q Consensus       293 ~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~  324 (669)
                      +++++|+ +.|+|++.+|..|+|||++|...+
T Consensus       173 ~iv~~Ll-~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        173 KIFDFLT-SLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHH-HcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999 678899999999999999997644

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=8.1e-24  Score=206.29  Aligned_cols=178  Identities=19%  Similarity=0.199  Sum_probs=132.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC--CHHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG--NHEVSAFLMEANPTVATKLNHESQSAFSL  114 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g--~~eivk~Ll~~~~~~~~~~~~~g~tpL~~  114 (669)
                      ...+.||||.|+..|+.++|+.|++.    .+..|..|.||||+|+..+  +.+++++|+++|++++...+..|.||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            45678899999999999999988875    3456788899999988754  88999999999888876634578888888


Q ss_pred             HHHc---CCHHHHHHHHcCCCccccccCCCCCcHHHHHHH--cCCHHHHHHHHhcCCcccCCCCCCCChHHHH-HHhcCC
Q 005931          115 ACRQ---GHLDVVKLLINQSWLMEFEEDSVESTPIYLAIS--RGHTDIAREILEVRPRFAGKTDKNGFSPLHY-ASSIGN  188 (669)
Q Consensus       115 A~~~---g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~-Aa~~g~  188 (669)
                      |+..   ++.+++++|++++.+.+ ..+..|.||||.|+.  .++.+++++|++.+.+. +.+|.+|.||||. ++..++
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCC
Confidence            7653   46788888888877766 456667778877765  35677777777777664 5567777777774 455667


Q ss_pred             HHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          189 VNMTKLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       189 ~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      .+++++|+++|++++.. |..|.|||++|+.++
T Consensus       172 ~~iv~~Ll~~Gadi~~~-d~~g~tpl~la~~~~  203 (209)
T PHA02859        172 KKIFDFLTSLGIDINET-NKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhhh
Confidence            77777777777777764 777777777776543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=236.29  Aligned_cols=292  Identities=24%  Similarity=0.268  Sum_probs=187.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      ..+-.|+|-.||..||.|+|+.|+..|++ ...+|..|.+||.+|+-.||..+|+.|+.+.+++....|..+.|+|.+||
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rgan-iehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGAN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhccc-ccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            34456677777777777777777777666 56667777777777777777777777777777766666677777777777


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCC-CCCCChHHHHHHhcCCHHHHHHH
Q 005931          117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKT-DKNGFSPLHYASSIGNVNMTKLL  195 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~-d~~g~t~Lh~Aa~~g~~eiv~~L  195 (669)
                      ..|..++|++||..+...+ .++-...|||.+|...|..+++..|+..+..+.... .+.|.+||.+|..+|+.+.++.|
T Consensus       833 sggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             CCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHH
Confidence            7777777777776665544 344445667777777777777777777665543222 33466777777777777777777


Q ss_pred             HhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Q 005931          196 LNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQ  275 (669)
Q Consensus       196 l~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~  275 (669)
                      ++.|.+++.....+..|+|-+|+..|+.+++..||.. .+.+.++.+.|-|||+-++..|..++=++|+..+.+......
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~-~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPv  990 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAA-QANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPV  990 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcchHHHHHHHH-hhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCC
Confidence            7777777766666666777777777777765544443 356666667777777777777777777777665322222223


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHH
Q 005931          276 DQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL  332 (669)
Q Consensus       276 D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l  332 (669)
                      -....|+|-+++..|+...++.|+ ++.+.+..+|++|+|+|.+|+..+.......+
T Consensus       991 p~T~dtalti~a~kGh~kfv~~ll-n~~atv~v~NkkG~T~Lwla~~Gg~lss~~il 1046 (2131)
T KOG4369|consen  991 PNTWDTALTIPANKGHTKFVPKLL-NGDATVRVPNKKGCTVLWLASAGGALSSCPIL 1046 (2131)
T ss_pred             CCcCCccceeecCCCchhhhHHhh-CCccceecccCCCCcccchhccCCccccchHH
Confidence            344456666666666666666666 55556666666666666666665554444333

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.90  E-value=1.5e-24  Score=235.11  Aligned_cols=321  Identities=20%  Similarity=0.232  Sum_probs=285.1

Q ss_pred             cCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHc
Q 005931            5 MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ   84 (669)
Q Consensus         5 m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~   84 (669)
                      .+..|-.|+..|+.|+++.++.  .+..+..+|+.|.+||.+|+-.||..+|+.|++...++....|+.++|+|.+||..
T Consensus       757 ~~t~LT~acaggh~e~vellv~--rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVV--RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             ccccccccccCccHHHHHHHHH--hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            4455778899999999999998  33667889999999999999999999999999999998888899999999999999


Q ss_pred             CCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931           85 GNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFE-EDSVESTPIYLAISRGHTDIAREILE  163 (669)
Q Consensus        85 g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~-~~~~~~t~L~~A~~~g~~~iv~~Ll~  163 (669)
                      |..++|++||..|++...+ |....|||.+|...|..+++..|+..+..++.. -.+.|.+||.+|.++|+.+.++.|++
T Consensus       835 gr~~vvelLl~~gankehr-nvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHR-NVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CcchHHHHHHHhhcccccc-chhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            9999999999999987665 889999999999999999999999999776532 34558899999999999999999999


Q ss_pred             cCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc--c
Q 005931          164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRL--T  241 (669)
Q Consensus       164 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~--d  241 (669)
                      .+.+++.....+.+|+|-+|+..|+.|++.+||...+.+..+ -+.|.|||.-++..|.+++-. +|...+++.+.-  -
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehR-aktgltplme~AsgGyvdvg~-~li~~gad~nasPvp  991 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHR-AKTGLTPLMEMASGGYVDVGN-LLIAAGADTNASPVP  991 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhh-cccCCcccchhhcCCccccch-hhhhcccccccCCCC
Confidence            999998888889999999999999999999999999988876 889999999999999999754 444555776643  3


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHH
Q 005931          242 TYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIE  321 (669)
Q Consensus       242 ~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~  321 (669)
                      ..-.|+|-+++..|+.+.+..|+..  ++-+..++++|+|+|-+|+..|....+.+|+ +.++|++..|+.-.+++..|.
T Consensus       992 ~T~dtalti~a~kGh~kfv~~lln~--~atv~v~NkkG~T~Lwla~~Gg~lss~~il~-~~~ad~d~qdnr~~S~~maaf 1068 (2131)
T KOG4369|consen  992 NTWDTALTIPANKGHTKFVPKLLNG--DATVRVPNKKGCTVLWLASAGGALSSCPILV-SSVADADQQDNRTNSRTMAAF 1068 (2131)
T ss_pred             CcCCccceeecCCCchhhhHHhhCC--ccceecccCCCCcccchhccCCccccchHHh-hcccChhhhhcccccccHHHH
Confidence            4556899999999999999999974  5667789999999999999999999999999 888899999999999999999


Q ss_pred             HcCCCchHHHHH
Q 005931          322 QAGTNDDATSLK  333 (669)
Q Consensus       322 ~~~~~~~~~~l~  333 (669)
                      +.++.+++..+.
T Consensus      1069 RKgh~~iVk~mv 1080 (2131)
T KOG4369|consen 1069 RKGHFAIVKKMV 1080 (2131)
T ss_pred             Hhchhheecccc
Confidence            999887765544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.3e-22  Score=212.52  Aligned_cols=170  Identities=15%  Similarity=0.155  Sum_probs=94.7

Q ss_pred             HHHHcCCHHHHHHHHHhCCcccc------ccCCCCCcHHHHHHH--cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931           46 LAARFGHVELVTEITKLCPELVA------AENEKLETPLHEACC--QGNHEVSAFLMEANPTVATKLNHESQSAFSLACR  117 (669)
Q Consensus        46 ~Aa~~g~~e~vk~Ll~~~~~~~~------~~n~~g~TpLh~Aa~--~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~  117 (669)
                      +|+..+..|+++.|+..+.+ ++      ..+..++|+||+|+.  .|+.++|++|+++|+++..   .++.||+|.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~-~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYM-EDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhcccc-cchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHH
Confidence            66666666777766666665 22      355556667776666  6666777777776666643   234566666666


Q ss_pred             cCCHHHHHHHHcCCCcccccc-----CCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHH
Q 005931          118 QGHLDVVKLLINQSWLMEFEE-----DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT  192 (669)
Q Consensus       118 ~g~~eiv~~Ll~~~~~~~~~~-----~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv  192 (669)
                      .++.+++++|++++.......     +..+.+++|.|...++.++++.|++++.+. +.+|..|.||||+|+..|+.+++
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiV  237 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLV  237 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHH
Confidence            666666666666665322111     012334455555555555555555554443 44455555555555555555555


Q ss_pred             HHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          193 KLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       193 ~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      ++|+++|++++.. |..|.||||.|+.+|
T Consensus       238 elLL~~GAdIN~~-d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        238 SWLLENGANVNAV-MSNGYTCLDVAVDRG  265 (437)
T ss_pred             HHHHHCCCCCCCc-CCCCCCHHHHHHHcC
Confidence            5555555555443 445555555555544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=4.3e-23  Score=218.89  Aligned_cols=256  Identities=22%  Similarity=0.258  Sum_probs=213.1

Q ss_pred             ccCHHHHHHHHhCCHHHHHHHHcCcch-----------hhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCC
Q 005931            4 GMAQNLSEAIVRNDKQALINLVGCSNK-----------RILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENE   72 (669)
Q Consensus         4 ~m~~~L~~Ai~~gd~~~l~~ll~~~~~-----------~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~   72 (669)
                      +|...|.+|++.||.+.+..+|+...+           ...+..|.+|.|+||.||.+|+.++++.|++..+- +...+.
T Consensus         2 gk~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-ldl~d~   80 (854)
T KOG0507|consen    2 GKKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-LDLCDT   80 (854)
T ss_pred             chhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-hhhhhc
Confidence            577889999999999999999983221           23455588999999999999999999999998776 677789


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHc
Q 005931           73 KLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISR  152 (669)
Q Consensus        73 ~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~  152 (669)
                      +|.+|||+|+..|+.|++++|+.++.. .+..+..|.||||.|++.||.+++.+|+.++.+.. ..+..+.|+|..|++.
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qf  158 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRF  158 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHh
Confidence            999999999999999999999999844 45558999999999999999999999999998875 5667788999999999


Q ss_pred             CCHHHHHHHHhcCCcc-------cCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHH
Q 005931          153 GHTDIAREILEVRPRF-------AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKI  225 (669)
Q Consensus       153 g~~~iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~  225 (669)
                      |..++++.|++..-..       ...++..+.+|||.|+.+|+.++++.|++.|.+++..  ....|+||.|+..|..++
T Consensus       159 gr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~--t~~gtalheaalcgk~ev  236 (854)
T KOG0507|consen  159 GRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT--TEDGTALHEAALCGKAEV  236 (854)
T ss_pred             hhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc--cccchhhhhHhhcCcchh
Confidence            9999999998762111       1234556788999999999999999999999999874  445689999999999999


Q ss_pred             HHHHHhcCCCCcccccCCCCcHHHHHHHc---CCHHHHHHHHH
Q 005931          226 LVAFLSSSPASFDRLTTYGETVFHLAVRF---DKYNAFKFLAE  265 (669)
Q Consensus       226 v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~---~~~~iv~~Ll~  265 (669)
                      +..||+.+ ...+..+.+|+|+|.+-...   ...+++-++..
T Consensus       237 vr~ll~~g-in~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  237 VRFLLEIG-INTHIKNQHGQTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             hhHHHhhc-cccccccccchHHHHHHHhcchhhhhhhhhhhhc
Confidence            87777554 78888999999998876643   44555555543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=9.4e-21  Score=220.17  Aligned_cols=252  Identities=19%  Similarity=0.128  Sum_probs=150.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHH-HHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALH-LAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG   85 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh-~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g   85 (669)
                      ..++.|+.+||.+.++.+++...+..++..|..|.|||| .|+..++.++++.|++.+.     .+..|+||||.|+..+
T Consensus        19 ~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~   93 (743)
T TIGR00870        19 KAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEY   93 (743)
T ss_pred             HHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhcc
Confidence            446777777777777777763223445566677777777 6666677777777776654     4556777777776521


Q ss_pred             ---CHHHHHHHHhhCCcc---------ccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC
Q 005931           86 ---NHEVSAFLMEANPTV---------ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG  153 (669)
Q Consensus        86 ---~~eivk~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g  153 (669)
                         ..++++.+...++..         ....+..|.||||+|+.+|+.++|++|++++++.+....  +....       
T Consensus        94 ~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~--~~~~~-------  164 (743)
T TIGR00870        94 VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC--GDFFV-------  164 (743)
T ss_pred             HHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcC--Cchhh-------
Confidence               122333333322210         001123466666666666666666666666655541111  10000       


Q ss_pred             CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCC-----H----H
Q 005931          154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR-----V----K  224 (669)
Q Consensus       154 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~-----~----e  224 (669)
                               . ...  ......|.||||.|+..|+.+++++|+++|++++.. |..|+||||+|+..+.     .    .
T Consensus       165 ---------~-~~~--~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~-d~~g~T~Lh~A~~~~~~~~~~~~l~~~  231 (743)
T TIGR00870       165 ---------K-SQG--VDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA-DSLGNTLLHLLVMENEFKAEYEELSCQ  231 (743)
T ss_pred             ---------c-CCC--CCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH-hhhhhHHHHHHHhhhhhhHHHHHHHHH
Confidence                     0 000  011245788999999889999999999988888876 8888999998888761     1    1


Q ss_pred             HHHHH---HhcCCCCc----ccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHH
Q 005931          225 ILVAF---LSSSPASF----DRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVL  288 (669)
Q Consensus       225 ~v~~L---L~~~~~~i----~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~  288 (669)
                      +.+.+   +... .+.    +..|.+|.||||+|+..|+.+++++|++...  ........++.|.+++..
T Consensus       232 ~~~~l~~ll~~~-~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~--~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       232 MYNFALSLLDKL-RDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKY--KQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHHHHHhcc-CChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHH--hcceeeccCcchHhHhhh
Confidence            22222   2221 122    5567888899999988888888888887521  122234556667776654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.3e-22  Score=210.66  Aligned_cols=199  Identities=12%  Similarity=0.076  Sum_probs=144.0

Q ss_pred             HHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccc------cccCCCCCcHHHHHHH--cCCHHHHHHH
Q 005931           56 VTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA------TKLNHESQSAFSLACR--QGHLDVVKLL  127 (669)
Q Consensus        56 vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~------~~~~~~g~tpL~~A~~--~g~~eiv~~L  127 (669)
                      -++++.+|.+ .+....+|     +|+..+..|++++|+.+|++++      . .+..++|+||+++.  .|+.++|++|
T Consensus        65 ~~~~~~~~~~-i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~-~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         65 YDYFRIHRDN-IDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIK-NCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHHcCcc-hhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhh-ccccccHHHHHHHHhcCCCHHHHHHH
Confidence            3566677766 45555555     8888888888888888888755      3 46668888888888  7888888888


Q ss_pred             HcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCC-----CCCChHHHHHHhcCCHHHHHHHHhcCCcc
Q 005931          128 INQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTD-----KNGFSPLHYASSIGNVNMTKLLLNHNKDL  202 (669)
Q Consensus       128 l~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d-----~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~  202 (669)
                      +++|++.+. .  .+.||+|.|+..++.+++++|+.++....+..+     ..+.+++|.|+..++.+++++|+++|+++
T Consensus       138 I~~GADIn~-~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI  214 (437)
T PHA02795        138 VDHGAVIYK-I--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI  214 (437)
T ss_pred             HHCCCCCCC-C--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc
Confidence            888887753 2  236788888888888888888887754322221     23667777777777777777777777777


Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCC--------HHHHHHHHHh
Q 005931          203 ALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDK--------YNAFKFLAES  266 (669)
Q Consensus       203 ~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~--------~~iv~~Ll~~  266 (669)
                      +.. |..|.||||+|+..|+.++++.|+.. |++++.+|..|+||||+|+..|+        .+++++|++.
T Consensus       215 N~k-D~~G~TpLh~Aa~~g~~eiVelLL~~-GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~  284 (437)
T PHA02795        215 NQL-DAGGRTLLYRAIYAGYIDLVSWLLEN-GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLRE  284 (437)
T ss_pred             CcC-CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhC
Confidence            765 77777777777777777777666644 46777777777777777777763        5777777765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=1.9e-23  Score=190.47  Aligned_cols=264  Identities=23%  Similarity=0.270  Sum_probs=208.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCH
Q 005931           42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL  121 (669)
Q Consensus        42 T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  121 (669)
                      ..+..++..|-.+.-..|.....   ..++..|+.-+-.+.+.|+.+++..++...++-....+.+|.++++.++-.++.
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~s---~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~  109 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEIS---ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSV  109 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHHH---HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCc
Confidence            34555666666555555554332   234556777777888888888888888877777766777888888888888888


Q ss_pred             HHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCc
Q 005931          122 DVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKD  201 (669)
Q Consensus       122 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~  201 (669)
                      +.++.++.++...+ +.+-.+.+|+.+++...+.+.+..+.+.   ..+..|+.|.|||.||+.+|++++|++|++.|++
T Consensus       110 ~k~sttltN~~rgn-evs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd  185 (296)
T KOG0502|consen  110 DKVSTTLTNGARGN-EVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD  185 (296)
T ss_pred             ceeeeeecccccCC-ccccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCC
Confidence            88888888776655 5666688899999988888877666553   3577899999999999999999999999999999


Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCc
Q 005931          202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNT  281 (669)
Q Consensus       202 ~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~T  281 (669)
                      +... .+...++|.+|++.|..++++.||.+. .++|..|-+|-|||.+|++.++.++++.|++.  +++++..|..|++
T Consensus       186 p~~l-gk~resALsLAt~ggytdiV~lLL~r~-vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s--GAd~t~e~dsGy~  261 (296)
T KOG0502|consen  186 PDAL-GKYRESALSLATRGGYTDIVELLLTRE-VDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS--GADVTQEDDSGYW  261 (296)
T ss_pred             hhhh-hhhhhhhHhHHhcCChHHHHHHHHhcC-CCcceeccCCCceeeeeecCChHHHHHHHHhc--CCCcccccccCCc
Confidence            8876 777789999999999999877666554 68899999999999999999999999999886  7788888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHH
Q 005931          282 VLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALD  318 (669)
Q Consensus       282 pLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~  318 (669)
                      ++.+|+..|+. +|+..+ +.-++.+.+|+.-.||+|
T Consensus       262 ~mdlAValGyr-~Vqqvi-e~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  262 IMDLAVALGYR-IVQQVI-EKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHHhhhH-HHHHHH-HHHHHHHhhcccCCCCCC
Confidence            99999998877 777777 555577777777777653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=1.6e-22  Score=214.53  Aligned_cols=249  Identities=21%  Similarity=0.239  Sum_probs=152.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhC------------CccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCC
Q 005931           42 TALHLAARFGHVELVTEITKLC------------PELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQ  109 (669)
Q Consensus        42 T~Lh~Aa~~g~~e~vk~Ll~~~------------~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~  109 (669)
                      +-|.-||+.|+.+.+..|++..            ++..+.+|.+|.|+||.|+.+|+.+++++|++..+-+... +..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~-d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLC-DTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhh-hccCc
Confidence            4466788888888888888752            2335667777888888888888888888888777665444 56777


Q ss_pred             cHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCH
Q 005931          110 SAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNV  189 (669)
Q Consensus       110 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~  189 (669)
                      +|||+|+..|+.|+++.++.++...+ ..+..|.||||.|++.|+.+++.+|++++.+. ..++..+.|+|..|++.|..
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~n-a~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILN-AVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRA  161 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCC-cccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhh
Confidence            77777777777777777776663333 44445666666666666666666666666553 45566666666666666666


Q ss_pred             HHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCC
Q 005931          190 NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNT  269 (669)
Q Consensus       190 eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~  269 (669)
                      ++++.|+...-.....                         ..-+  -..++..+-+|||.|+++|+.++++.|++.  +
T Consensus       162 ~Vvq~ll~~~~~~~~~-------------------------~~~~--~~~~~~~~~~plHlaakngh~~~~~~ll~a--g  212 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSS-------------------------LRVG--DIKRPFPAIYPLHLAAKNGHVECMQALLEA--G  212 (854)
T ss_pred             HHHHHHhhhccchhhc-------------------------ccCC--CCCCCCCCcCCcchhhhcchHHHHHHHHhc--C
Confidence            6666666552111100                         0000  122334455566666666666666666553  4


Q ss_pred             CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcC
Q 005931          270 CLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAG  324 (669)
Q Consensus       270 ~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~  324 (669)
                      .++|...++| |+||.|+.+|..++|.+|+ +.|++...+|.+|+|+|++.....
T Consensus       213 ~din~~t~~g-talheaalcgk~evvr~ll-~~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  213 FDINYTTEDG-TALHEAALCGKAEVVRFLL-EIGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             CCcccccccc-hhhhhHhhcCcchhhhHHH-hhccccccccccchHHHHHHHhcc
Confidence            4455443333 5666666666666666666 555566666666666666555433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=2.9e-22  Score=232.83  Aligned_cols=253  Identities=17%  Similarity=0.139  Sum_probs=178.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHh--CCccccccCCCCCcHHH-HHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931           38 ASLNTALHLAARFGHVELVTEITKL--CPELVAAENEKLETPLH-EACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL  114 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~--~~~~~~~~n~~g~TpLh-~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~  114 (669)
                      ..+.+.|+.||+.|+.+.|+.+++.  +.+ ++..|..|.|||| .|+.+++.++++.|++.+.     .+..|.||||.
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~-in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~   88 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLN-INCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHA   88 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccC-CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHH
Confidence            4567889999999999999999987  545 6778889999999 8888889999999998876     47788999998


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHH
Q 005931          115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL  194 (669)
Q Consensus       115 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~  194 (669)
                      |+.. ..+.++.++.......  .+  + .+.             .+..   +.....+..|.||||+|+..|+.+++++
T Consensus        89 A~~~-~~~~v~~ll~~l~~~~--~~--~-~~~-------------~~~~---~~~~~~~~~G~TpLhlAa~~~~~eiVkl  146 (743)
T TIGR00870        89 ISLE-YVDAVEAILLHLLAAF--RK--S-GPL-------------ELAN---DQYTSEFTPGITALHLAAHRQNYEIVKL  146 (743)
T ss_pred             HHhc-cHHHHHHHHHHHhhcc--cc--c-Cch-------------hhhc---cccccccCCCCcHHHHHHHhCCHHHHHH
Confidence            8873 3333333332211110  00  0 011             0000   0011224568889999999999999999


Q ss_pred             HHhcCCcccccc-------------CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcC------
Q 005931          195 LLNHNKDLALQY-------------NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD------  255 (669)
Q Consensus       195 Ll~~g~~~~~~~-------------~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~------  255 (669)
                      |+++|++++...             ...|.||||.|+..|+.++++.|++ .|++++..|..|+||||+|+..+      
T Consensus       147 LL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~~~~~~~  225 (743)
T TIGR00870       147 LLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFKAEY  225 (743)
T ss_pred             HHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhhhhhHHH
Confidence            999888887531             1358999999999999999777765 56799999999999999999986      


Q ss_pred             ---CHHHHHHHHHhcCC-CCC----ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931          256 ---KYNAFKFLAESFNT-CLF----HGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDII  320 (669)
Q Consensus       256 ---~~~iv~~Ll~~~~~-~~i----n~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a  320 (669)
                         ...+.+++++.... ...    +..|.+|.||||+|+..|+.+++++|++ .+.+........+.+.+++
T Consensus       226 ~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~-~~~~~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       226 EELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA-IKYKQKKFVAWPNGQQLLS  297 (743)
T ss_pred             HHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH-HHHhcceeeccCcchHhHh
Confidence               23456666665332 222    5678999999999999999999999994 3223333333444444443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=9.2e-23  Score=186.00  Aligned_cols=263  Identities=24%  Similarity=0.254  Sum_probs=222.3

Q ss_pred             HHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCH
Q 005931            8 NLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNH   87 (669)
Q Consensus         8 ~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~   87 (669)
                      +++.++..|-.+--..+..    .+-.-++..|...+-.+.+.|+.++++.++..+++.+...+..|+.+++.|+-.|+.
T Consensus        34 ~~~~~~~m~~t~p~~~l~~----~~s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~  109 (296)
T KOG0502|consen   34 ELFEQVEMGTTEPRCALTA----EISALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSV  109 (296)
T ss_pred             HHHHHhhccccchhHHHHH----HHHHHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCc
Confidence            3666666666555555444    122334778888899999999999999999988887778888899999999999999


Q ss_pred             HHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCc
Q 005931           88 EVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPR  167 (669)
Q Consensus        88 eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~  167 (669)
                      ..+..++.++...+.. +.-+.+|+.+++...+.+++..+.++..   +..|..|.|||.+|+..|+.+++++|++.+.+
T Consensus       110 ~k~sttltN~~rgnev-s~~p~s~~slsVhql~L~~~~~~~~n~V---N~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd  185 (296)
T KOG0502|consen  110 DKVSTTLTNGARGNEV-SLMPWSPLSLSVHQLHLDVVDLLVNNKV---NACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD  185 (296)
T ss_pred             ceeeeeecccccCCcc-ccccCChhhHHHHHHHHHHHHHHhhccc---cCccccCchHhHHHHhcCchHHHHHHHHcCCC
Confidence            9999999988877654 7789999999999999999888776542   36788899999999999999999999999887


Q ss_pred             ccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcH
Q 005931          168 FAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETV  247 (669)
Q Consensus       168 ~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~  247 (669)
                      . ....+...|+|.+|++.|..++|++|+.++.+++.. |.+|.|||-+|++.++.++++.||.++ ++++..+..|.++
T Consensus       186 p-~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvy-DwNGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~  262 (296)
T KOG0502|consen  186 P-DALGKYRESALSLATRGGYTDIVELLLTREVDVNVY-DWNGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWI  262 (296)
T ss_pred             h-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCccee-ccCCCceeeeeecCChHHHHHHHHhcC-CCcccccccCCcH
Confidence            5 666777889999999999999999999999999986 999999999999999999988888665 8899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHH
Q 005931          248 FHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLH  284 (669)
Q Consensus       248 Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh  284 (669)
                      +..|+..|+. +++.+++.  -.+.+.+|..-.||+|
T Consensus       263 mdlAValGyr-~Vqqvie~--h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  263 MDLAVALGYR-IVQQVIEK--HALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHhhhH-HHHHHHHH--HHHHHhhcccCCCCCC
Confidence            9999999988 77877775  3455667777777775

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.86  E-value=2e-20  Score=218.61  Aligned_cols=175  Identities=21%  Similarity=0.258  Sum_probs=158.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc
Q 005931          141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN  220 (669)
Q Consensus       141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~  220 (669)
                      ...++|+.|+..|+.++++.|++.+.+. +..|.+|.||||+|+..|+.+++++|+++|++++.. |.+|.||||.|+..
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~-d~~G~TpL~~A~~~  601 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIR-DANGNTALWNAISA  601 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCc-CCCCCCHHHHHHHh
Confidence            3568999999999999999999998885 788999999999999999999999999999999876 99999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       221 g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      |+.++++.|+... ...+  ...|.++||.|+.+|+.+++++|++.  +.++|.+|.+|+||||+|+..|+.+++++|+ 
T Consensus       602 g~~~iv~~L~~~~-~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~--Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll-  675 (823)
T PLN03192        602 KHHKIFRILYHFA-SISD--PHAAGDLLCTAAKRNDLTAMKELLKQ--GLNVDSEDHQGATALQVAMAEDHVDMVRLLI-  675 (823)
T ss_pred             CCHHHHHHHHhcC-cccC--cccCchHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHH-
Confidence            9999998887544 2222  35678999999999999999999996  7789999999999999999999999999999 


Q ss_pred             hcCcccccccCCC-CCHHHHHHHc
Q 005931          301 ETVLDIYCRNHKN-QTALDIIEQA  323 (669)
Q Consensus       301 ~~~~d~~~~n~~g-~T~L~~a~~~  323 (669)
                      +.|+|++..|..| .||++++...
T Consensus       676 ~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        676 MNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HcCCCCCCCCCCCCCCHHHHHHHH
Confidence            7889999999998 9999887553

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.86  E-value=1.6e-20  Score=219.46  Aligned_cols=173  Identities=21%  Similarity=0.310  Sum_probs=101.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931           38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR  117 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~  117 (669)
                      ..+.++||.||..|+.++++.|++.|.+ ++..|..|.||||+||..|+.+++++|+++|++++.. |.+|.||||.|+.
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~-d~~G~TpL~~A~~  600 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIR-DANGNTALWNAIS  600 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCc-CCCCCCHHHHHHH
Confidence            3445666666666666666666666666 5666666666666666666666666666666665443 6666666666666


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q 005931          118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN  197 (669)
Q Consensus       118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~  197 (669)
                      .|+.+++++|++.+...+   ...+.++||.|+..|+.++++.|++++.+. +..|.+|.||||+|+..|+.+++++|++
T Consensus       601 ~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        601 AKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             hCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            666666666665443322   122334555555555555555555555543 4455555555555555555555555555


Q ss_pred             cCCccccccCCCC-ChHHHHH
Q 005931          198 HNKDLALQYNKDG-YTPLHLA  217 (669)
Q Consensus       198 ~g~~~~~~~~~~g-~tpLh~A  217 (669)
                      +|++++.. |.+| .+|+..+
T Consensus       677 ~GAdv~~~-~~~g~~t~~~l~  696 (823)
T PLN03192        677 NGADVDKA-NTDDDFSPTELR  696 (823)
T ss_pred             cCCCCCCC-CCCCCCCHHHHH
Confidence            55555544 4333 5555444

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=1.6e-20  Score=183.60  Aligned_cols=166  Identities=27%  Similarity=0.318  Sum_probs=146.8

Q ss_pred             cCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc-----CCHHHHHHHHhcCCCCcccc-cC
Q 005931          169 AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN-----GRVKILVAFLSSSPASFDRL-TT  242 (669)
Q Consensus       169 ~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~-----g~~e~v~~LL~~~~~~i~~~-d~  242 (669)
                      .+..|.+|+|+|||++.+++.++|+.||+.|..-.-..|+-|+||+++|+..     .+.++|..|+..+  ++|.+ ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg--nVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG--DVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc--Ccchhhhh
Confidence            3667999999999999999999999999998644444599999999998853     4567888888775  56665 46


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHH
Q 005931          243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQ  322 (669)
Q Consensus       243 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~  322 (669)
                      .|+|+|++|+.+|+.++++.|+..  ++++|.+|.+|.|+|++|+++|+.+++++||....+|....|.+|-|+|.+|..
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLac--gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLAC--GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHc--cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHh
Confidence            899999999999999999999986  789999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHH
Q 005931          323 AGTNDDATSLKKLFKT  338 (669)
Q Consensus       323 ~~~~~~~~~l~~~l~~  338 (669)
                      .|+.++.-.|...+..
T Consensus       417 agh~eIa~mlYa~~n~  432 (452)
T KOG0514|consen  417 AGHREIAVMLYAHMNI  432 (452)
T ss_pred             cCchHHHHHHHHHHHh
Confidence            9999988777655443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=9.1e-20  Score=187.87  Aligned_cols=229  Identities=25%  Similarity=0.308  Sum_probs=180.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN   86 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~   86 (669)
                      ..++.|...||.+.+..++. .. ...+..+.+|.|+||-||.-.+.+||++|++.++. ++..|..|+||||.|+..|+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~-~g-a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLN-RG-ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN-VNAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             HHHHhccccccHHHHHHHhc-cC-CCccccCCccchhHHHHHhcccHHHHHHHHHhcCC-ccccccccCCcchhhccccc
Confidence            35889999999999999998 33 33478899999999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC----CHHHHHHHH
Q 005931           87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG----HTDIAREIL  162 (669)
Q Consensus        87 ~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g----~~~iv~~Ll  162 (669)
                      ..++++|++.|+++... |.+|..|+..+...-..+++..-....          |.+ + -|++.-    -.+-++..+
T Consensus       119 ~~i~~~li~~gA~~~av-Nsdg~~P~dl~e~ea~~~~l~~~~~r~----------gi~-i-ea~R~~~e~~ml~D~~q~l  185 (527)
T KOG0505|consen  119 LNIVEYLIQHGANLLAV-NSDGNMPYDLAEDEATLDVLETEMARQ----------GID-I-EAARKAEEQTMLDDARQWL  185 (527)
T ss_pred             HHHHHHHHHhhhhhhhc-cCCCCCccccccCcchhHHHHHHHHHh----------ccc-H-HHHhhhhHHHHHHHHHHHH
Confidence            99999999999998765 889999988887666665555433221          111 1 111111    112223334


Q ss_pred             hcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 005931          163 EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT  242 (669)
Q Consensus       163 ~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~  242 (669)
                      ..+... ...+..|-|.||.|+.+|+.++.++|+++|.++... |.+|+||||.|+.-|..+.++ +|...+.+++..+.
T Consensus       186 ~~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~-D~dgWtPlHAAA~Wg~~~~~e-lL~~~ga~~d~~t~  262 (527)
T KOG0505|consen  186 NAGAEL-DARHARGATALHVAAANGYTEVAALLLQAGYSVNIK-DYDGWTPLHAAAHWGQEDACE-LLVEHGADMDAKTK  262 (527)
T ss_pred             hccccc-cccccccchHHHHHHhhhHHHHHHHHHHhccCcccc-cccCCCcccHHHHhhhHhHHH-HHHHhhcccchhhh
Confidence            444443 455555899999999999999999999999998886 999999999999999998876 66666688898899


Q ss_pred             CCCcHHHHHHHc
Q 005931          243 YGETVFHLAVRF  254 (669)
Q Consensus       243 ~g~t~Lh~Av~~  254 (669)
                      .|+||+-+|..-
T Consensus       263 ~g~~p~dv~dee  274 (527)
T KOG0505|consen  263 MGETPLDVADEE  274 (527)
T ss_pred             cCCCCccchhhh
Confidence            999998888653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=2e-19  Score=185.42  Aligned_cols=232  Identities=21%  Similarity=0.246  Sum_probs=148.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931           43 ALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLD  122 (669)
Q Consensus        43 ~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e  122 (669)
                      .+.-||..|..+-|+.|+..+.. ++..|.+|.|+||-||...+.+||++|+++|++++.. +..|+||||.|+..|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~-~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~-d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS-PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQ-DNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC-ccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccc-ccccCCcchhhcccccHH
Confidence            45556667777777777777665 4666777777777777777777777777777776554 666666666666666666


Q ss_pred             HHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh-cCCc
Q 005931          123 VVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN-HNKD  201 (669)
Q Consensus       123 iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~-~g~~  201 (669)
                      ++++|++++.+.. ..+..|..|+                                  ..+..--..++...-.. .|.+
T Consensus       121 i~~~li~~gA~~~-avNsdg~~P~----------------------------------dl~e~ea~~~~l~~~~~r~gi~  165 (527)
T KOG0505|consen  121 IVEYLIQHGANLL-AVNSDGNMPY----------------------------------DLAEDEATLDVLETEMARQGID  165 (527)
T ss_pred             HHHHHHHhhhhhh-hccCCCCCcc----------------------------------ccccCcchhHHHHHHHHHhccc
Confidence            6666666665443 2233333333                                  33322222222221111 1111


Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCc
Q 005931          202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNT  281 (669)
Q Consensus       202 ~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~T  281 (669)
                      +...+...-.+-|+        ++ ...+. .+...+..+..|.|.||+|+.+|..++.++|++.  +..++.+|.+|+|
T Consensus       166 iea~R~~~e~~ml~--------D~-~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a--g~~~~~~D~dgWt  233 (527)
T KOG0505|consen  166 IEAARKAEEQTMLD--------DA-RQWLN-AGAELDARHARGATALHVAAANGYTEVAALLLQA--GYSVNIKDYDGWT  233 (527)
T ss_pred             HHHHhhhhHHHHHH--------HH-HHHHh-ccccccccccccchHHHHHHhhhHHHHHHHHHHh--ccCcccccccCCC
Confidence            11111111111121        11 22333 5566677776789999999999999999999986  5677888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcC
Q 005931          282 VLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAG  324 (669)
Q Consensus       282 pLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~  324 (669)
                      |||.|+..|..+++++|+ ..|++.+.++..|.||++++....
T Consensus       234 PlHAAA~Wg~~~~~elL~-~~ga~~d~~t~~g~~p~dv~dee~  275 (527)
T KOG0505|consen  234 PLHAAAHWGQEDACELLV-EHGADMDAKTKMGETPLDVADEEE  275 (527)
T ss_pred             cccHHHHhhhHhHHHHHH-HhhcccchhhhcCCCCccchhhhh
Confidence            999999999999999777 778899999999999999887644

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.79  E-value=2.9e-19  Score=174.93  Aligned_cols=196  Identities=21%  Similarity=0.283  Sum_probs=145.4

Q ss_pred             ChHHHH----HHHc-CCHHHHHHHHHh----CCc----cccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCC
Q 005931           41 NTALHL----AARF-GHVELVTEITKL----CPE----LVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHE  107 (669)
Q Consensus        41 ~T~Lh~----Aa~~-g~~e~vk~Ll~~----~~~----~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~  107 (669)
                      .|.+|.    |+.. -+.+.|+-.+..    .++    .+|..|.+|+|+||||+.++|.++|+.||+.|.......|..
T Consensus       222 ~tv~~eW~~~a~~s~a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrA  301 (452)
T KOG0514|consen  222 ATVQHEWFTNSSTSSSDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRA  301 (452)
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccc
Confidence            455553    3332 356666544432    222    356778888888888888888888888888888777777888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcC
Q 005931          108 SQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG  187 (669)
Q Consensus       108 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g  187 (669)
                      |.||+++|+...-        +                     ...+.++|..|...+.. +......|.|+|.+|+.+|
T Consensus       302 GYtpiMLaALA~l--------k---------------------~~~d~~vV~~LF~mgnV-NaKAsQ~gQTALMLAVSHG  351 (452)
T KOG0514|consen  302 GYTPVMLAALAKL--------K---------------------QPADRTVVERLFKMGDV-NAKASQHGQTALMLAVSHG  351 (452)
T ss_pred             cccHHHHHHHHhh--------c---------------------chhhHHHHHHHHhccCc-chhhhhhcchhhhhhhhcC
Confidence            8888887754210        0                     01123555666655433 2333567889999999999


Q ss_pred             CHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931          188 NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF  267 (669)
Q Consensus       188 ~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~  267 (669)
                      +.++|+.||..|+|++.+ |.+|.|+|++|+.+||.|+++.||.....++...|.+|.|+|.+|...|+.+|.-+|+.+.
T Consensus       352 r~d~vk~LLacgAdVNiQ-DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  352 RVDMVKALLACGADVNIQ-DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             cHHHHHHHHHccCCCccc-cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            999999999999999887 8899999999999999999988888888888888888999999999999988888887653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=6e-18  Score=149.16  Aligned_cols=146  Identities=25%  Similarity=0.312  Sum_probs=131.4

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCH
Q 005931          178 SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKY  257 (669)
Q Consensus       178 t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~  257 (669)
                      -.+.+|+..+.+..|+.||+..++....+|.+|+||||-|+.+|+.+|+..|+..+ ++.+.+...|+||||-||+.++.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g-An~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG-ANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHcc-CCcccccccCccchhhhhcccch
Confidence            45678999999999999999998877778999999999999999999988887654 88999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHHHhcCcccccccCCCCCHHHHHHHcCCC
Q 005931          258 NAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNY-QFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTN  326 (669)
Q Consensus       258 ~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~-~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~  326 (669)
                      +++.+|+++  ++++|+......||||+||...+. ..+++|+...++++..+++.+.||+++|.+.+-.
T Consensus       144 ~va~~LLqh--gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  144 EVAGRLLQH--GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             hHHHHHHhc--cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            999999997  778999999999999999988754 6788899899999999999999999999987643

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=6.6e-18  Score=148.88  Aligned_cols=141  Identities=20%  Similarity=0.218  Sum_probs=67.4

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHH
Q 005931           44 LHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDV  123 (669)
Q Consensus        44 Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei  123 (669)
                      +.+|+..+....|+.|++..++.++.+|.+|.||||.|+.+|+.+||+.|+..|++...+ ...|.||||.||...+.++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~-T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK-TNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccc-cccCccchhhhhcccchhH
Confidence            444555555555555555555555555555555555555555555555555555554433 4455555555555555555


Q ss_pred             HHHHHcCCCccccccCCCCCcHHHHHHHcCC-HHHHHHHHhcCCcccCCCCCCCChHHHHHHhc
Q 005931          124 VKLLINQSWLMEFEEDSVESTPIYLAISRGH-TDIAREILEVRPRFAGKTDKNGFSPLHYASSI  186 (669)
Q Consensus       124 v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~-~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  186 (669)
                      +..|++++++++. ......||||.|+...+ ...+.+|+......+...+..+.||+..|-+.
T Consensus       146 a~~LLqhgaDVnA-~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  146 AGRLLQHGADVNA-QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             HHHHHhccCcccc-cccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            5555555555442 22223455555544333 23333333333333334444455555555443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.76  E-value=9.4e-18  Score=157.43  Aligned_cols=142  Identities=14%  Similarity=0.171  Sum_probs=113.1

Q ss_pred             CCCCCCChHHHHHHhcCCH----HHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHH--HHHHhcCCCCccccc-CC
Q 005931          171 KTDKNGFSPLHYASSIGNV----NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL--VAFLSSSPASFDRLT-TY  243 (669)
Q Consensus       171 ~~d~~g~t~Lh~Aa~~g~~----eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v--~~LL~~~~~~i~~~d-~~  243 (669)
                      ..+.++.++||.||+.|+.    +++++|.+.+..++.. |.+|+||||+|+..|+.+.+  ..+|...+.+++.++ ..
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~   93 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGT   93 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3456677888999988887    5666777888877754 88899999999998886652  234445568888887 58


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCC
Q 005931          244 GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT  315 (669)
Q Consensus       244 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T  315 (669)
                      |+||||+|+..++.+++++|++. .+.+++.+|..|.||||+|+..++.+++++|+ ..|++++.++..|..
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~-~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll-~~ga~~~~~~~~~~~  163 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQ-LGVNLGAINYQHETAYHIAYKMRDRRMMEILR-ANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhc-cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcccCCcc
Confidence            99999999999999999999852 26677888999999999999999999999998 677899888877753

>PHA02741 hypothetical protein; Provisional

Probab=99.75  E-value=1.5e-17  Score=156.74  Aligned_cols=124  Identities=22%  Similarity=0.296  Sum_probs=64.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhc-----CCCCcccccCCCCcHHHHHHHcCC----HHHHHHHHHhcCCCCCccCCC
Q 005931          207 NKDGYTPLHLAAINGRVKILVAFLSS-----SPASFDRLTTYGETVFHLAVRFDK----YNAFKFLAESFNTCLFHGQDQ  277 (669)
Q Consensus       207 ~~~g~tpLh~Aa~~g~~e~v~~LL~~-----~~~~i~~~d~~g~t~Lh~Av~~~~----~~iv~~Ll~~~~~~~in~~D~  277 (669)
                      +..|.||||+|+..|+.++++.|+..     .+.+++.+|..|+||||+|+..++    .+++++|++.  +.++|.+|.
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~--gadin~~~~   95 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL--GADINAQEM   95 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc--CCCCCCCCc
Confidence            34445555555555555544444321     123445555555555555555555    3455555553  444555553


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHH
Q 005931          278 -FGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL  332 (669)
Q Consensus       278 -~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l  332 (669)
                       +|+||||+|+..++.+++++|++..+++++.+|..|+|||++|...++.+....|
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L  151 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQIL  151 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHH
Confidence             5666666666666666666665444556666666666666666655544433333

>PHA02741 hypothetical protein; Provisional

Probab=99.75  E-value=3e-17  Score=154.77  Aligned_cols=132  Identities=18%  Similarity=0.268  Sum_probs=101.0

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHh------CCccccccCCCCCcHHHHHHHcCC----HHHHHHHHhhCCccc
Q 005931           32 ILLQRDASLNTALHLAARFGHVELVTEITKL------CPELVAAENEKLETPLHEACCQGN----HEVSAFLMEANPTVA  101 (669)
Q Consensus        32 ~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~------~~~~~~~~n~~g~TpLh~Aa~~g~----~eivk~Ll~~~~~~~  101 (669)
                      .++.+|..|.|+||+||..|+.++++.|+..      +.+ ++.+|..|+||||+|+..|+    .+++++|++.|++++
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin   91 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN   91 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Confidence            4556788899999999999999999988653      233 67888889999999999888    578888888888876


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHcC-CCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 005931          102 TKLNHESQSAFSLACRQGHLDVVKLLINQ-SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR  165 (669)
Q Consensus       102 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~  165 (669)
                      ...+..|.||||+|+..++.+++++|++. +.+.+ ..+..|.||||.|+..++.++++.|++..
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            55224788888888888888888888863 55544 45666777777777777777777777654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=3.6e-17  Score=165.40  Aligned_cols=157  Identities=17%  Similarity=0.191  Sum_probs=128.7

Q ss_pred             hcccCCCCCh-HHHHHHHcCCHHHHHHHHHhCCcccccc----CCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCC
Q 005931           33 LLQRDASLNT-ALHLAARFGHVELVTEITKLCPELVAAE----NEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHE  107 (669)
Q Consensus        33 l~~~d~~g~T-~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~----n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~  107 (669)
                      +..+|..|.| +||.|+..|+.+++++|++.|++ ++.+    +..|.||||+|+..|+.+++++|+++|+++....+..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~  103 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEA  103 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCC
Confidence            4566777654 57777778999999999999998 5665    4589999999999999999999999999987654667


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcC
Q 005931          108 SQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG  187 (669)
Q Consensus       108 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g  187 (669)
                      |.||||.|+..++.+++++|++.+++.+ ..+..|.||||.|+..++.+++..+..      ...+..+.+|++++   +
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~  173 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL---I  173 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh---c
Confidence            9999999999999999999999998877 467778999999999888887755542      22456677888875   4


Q ss_pred             CHHHHHHHHhcCC
Q 005931          188 NVNMTKLLLNHNK  200 (669)
Q Consensus       188 ~~eiv~~Ll~~g~  200 (669)
                      +.+++++|+.++.
T Consensus       174 n~ei~~~Lish~v  186 (300)
T PHA02884        174 NFDILKILVSHFI  186 (300)
T ss_pred             cHHHHHHHHHHHH
Confidence            6889999988866

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.72  E-value=1.2e-16  Score=150.05  Aligned_cols=138  Identities=18%  Similarity=0.216  Sum_probs=113.0

Q ss_pred             CCCCCcHHHHHHHcCCH----HHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHH---HHHHHHhcCCccccccC-CCC
Q 005931          139 DSVESTPIYLAISRGHT----DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN---MTKLLLNHNKDLALQYN-KDG  210 (669)
Q Consensus       139 ~~~~~t~L~~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~e---iv~~Ll~~g~~~~~~~~-~~g  210 (669)
                      +..+.++||.|++.|+.    +++++|++.+... +..|..|+||||+|+..|+.+   ++++|+++|++++.. + ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~-d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAR-ELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCC-CCCCC
Confidence            34466788888888887    4455556655543 667889999999999988755   478999999999876 5 589


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCC
Q 005931          211 YTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGN  280 (669)
Q Consensus       211 ~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~  280 (669)
                      .||||+|+..|+.++++.|+...+.+++..+..|+||||+|+..++.+++++|++.  +.+++.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN--GAVCDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcccCCc
Confidence            99999999999999998888767789999999999999999999999999999986  567777776664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.69  E-value=6.4e-16  Score=156.39  Aligned_cols=85  Identities=26%  Similarity=0.242  Sum_probs=37.9

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHc
Q 005931          175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRF  254 (669)
Q Consensus       175 ~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~  254 (669)
                      .|.||||+|+..|+.+++++|+++|++++...+..|.||||.|+..|+.++++.|+.. +++++.+|..|.||||+|++.
T Consensus        69 ~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~  147 (300)
T PHA02884         69 SKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMI  147 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHh
Confidence            4444444444444444444444444444432223344444444444444444333322 244444444444444444444


Q ss_pred             CCHHHH
Q 005931          255 DKYNAF  260 (669)
Q Consensus       255 ~~~~iv  260 (669)
                      ++.+++
T Consensus       148 ~~~~~~  153 (300)
T PHA02884        148 CNNFLA  153 (300)
T ss_pred             CChhHH
Confidence            444443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.69  E-value=1.6e-16  Score=147.59  Aligned_cols=132  Identities=20%  Similarity=0.143  Sum_probs=81.3

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHhC------CccccccCCCCCcHHHHHHHcCCH---HHHHHHHhhCCccc
Q 005931           31 RILLQRDASLNTALHLAARFGHVELVTEITKLC------PELVAAENEKLETPLHEACCQGNH---EVSAFLMEANPTVA  101 (669)
Q Consensus        31 ~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~------~~~~~~~n~~g~TpLh~Aa~~g~~---eivk~Ll~~~~~~~  101 (669)
                      ...+++|..|.||||+||+.|+.+  +.+...+      +..+...|..|.||||+|+..|+.   +++++|++.|++++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            345566888888888888888732  2222111      122445677788888888888776   45777888777766


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHcC-CCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 005931          102 TKLNHESQSAFSLACRQGHLDVVKLLINQ-SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR  165 (669)
Q Consensus       102 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~  165 (669)
                      ...+..|.||||+|+..++.+++++|+++ +.+.+ ..+..|.||||+|+..|+.++++.|++.+
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            54224677777777777777777777753 43332 33444555555555555555555555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.68  E-value=2.3e-16  Score=146.50  Aligned_cols=135  Identities=16%  Similarity=0.151  Sum_probs=97.7

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhhC------CccccccCCCCCcHHHHHHHcCCHH---HHHHHHcCCCccccc
Q 005931           67 VAAENEKLETPLHEACCQGNHEVSAFLMEAN------PTVATKLNHESQSAFSLACRQGHLD---VVKLLINQSWLMEFE  137 (669)
Q Consensus        67 ~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~------~~~~~~~~~~g~tpL~~A~~~g~~e---iv~~Ll~~~~~~~~~  137 (669)
                      .+.+|..|.||||+|++.|+.  ++++...+      .......|..|.||||+|+..|+.+   ++++|++.+.+.+..
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            456788899999999999984  33333221      1122334778889999888888764   577888888776633


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccc
Q 005931          138 EDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA  203 (669)
Q Consensus       138 ~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~  203 (669)
                      .+..|.||||+|+..++.+++++|+.......+..|..|.||||+|+..|+.+++++|+++|++..
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            334688888888888888888888875333346777888888888888888888888888877653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=1.2e-15  Score=165.00  Aligned_cols=212  Identities=24%  Similarity=0.216  Sum_probs=164.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcc-------hhhhcccCCCCChHHHHHHHc---CCHHHHHHHHHhCCccccc----cCC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSN-------KRILLQRDASLNTALHLAARF---GHVELVTEITKLCPELVAA----ENE   72 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~-------~~~l~~~d~~g~T~Lh~Aa~~---g~~e~vk~Ll~~~~~~~~~----~n~   72 (669)
                      +.++.+..+|+++.+..+++...       --.+++|...|.|+||.|..+   ++.++++.|++..|.+++.    ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            56888999999999998887331       124677788999999999984   5579999999998876554    346


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHc
Q 005931           73 KLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISR  152 (669)
Q Consensus        73 ~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~  152 (669)
                      .|+||||+|+.+.+.++|++|++.|+++....-..    ++.+-..+...       ...+.. ..-..|..||..|+..
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~----FF~~~dqk~~r-------k~T~Y~-G~~YfGEyPLSfAAC~  250 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGA----FFCPDDQKASR-------KSTNYT-GYFYFGEYPLSFAACT  250 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcc----ccCcccccccc-------cccCCc-ceeeeccCchHHHHHc
Confidence            79999999999999999999999999986541110    00000000000       000000 1123578999999999


Q ss_pred             CCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCc--cccccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931          153 GHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKD--LALQYNKDGYTPLHLAAINGRVKILVAFL  230 (669)
Q Consensus       153 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~--~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL  230 (669)
                      ++.|++++|++++.+. +.+|.+|+|.||..+..-..++-++++++|++  ... .|..|.|||.+|++-|+.++.+.++
T Consensus       251 nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v-~N~qgLTPLtLAaklGk~emf~~il  328 (782)
T KOG3676|consen  251 NQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHV-RNNQGLTPLTLAAKLGKKEMFQHIL  328 (782)
T ss_pred             CCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccc-cccCCCChHHHHHHhhhHHHHHHHH
Confidence            9999999999988775 88999999999999999889999999999998  544 4999999999999999999999999


Q ss_pred             hc
Q 005931          231 SS  232 (669)
Q Consensus       231 ~~  232 (669)
                      +.
T Consensus       329 e~  330 (782)
T KOG3676|consen  329 ER  330 (782)
T ss_pred             Hh
Confidence            87

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=5.7e-14  Score=152.25  Aligned_cols=212  Identities=22%  Similarity=0.306  Sum_probs=131.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCC---------CccccccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCcccCCC---
Q 005931          108 SQSAFSLACRQGHLDVVKLLINQS---------WLMEFEEDSVESTPIYLAISR---GHTDIAREILEVRPRFAGKT---  172 (669)
Q Consensus       108 g~tpL~~A~~~g~~eiv~~Ll~~~---------~~~~~~~~~~~~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~---  172 (669)
                      .+.++..|...+..+....|+...         ++.+ .+...|.|.||.|..+   ++.++++.|++..|.+.+..   
T Consensus       101 d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~-~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~  179 (782)
T KOG3676|consen  101 DRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLN-ERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTS  179 (782)
T ss_pred             chhhhhhccccccHHHHhccchhhhhhhhhhhhhccc-cccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhh
Confidence            336777777777777777776554         2222 3466789999999874   45688999999888766543   


Q ss_pred             -CCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHH
Q 005931          173 -DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA  251 (669)
Q Consensus       173 -d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~A  251 (669)
                       ...|.||||.|+.+.+.++|++|++.|+|++.+.-..-..|=..  +.++          ...+..-.-..|+.||..|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dq--k~~r----------k~T~Y~G~~YfGEyPLSfA  247 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQ--KASR----------KSTNYTGYFYFGEYPLSFA  247 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccc--cccc----------cccCCcceeeeccCchHHH
Confidence             34699999999999999999999999999886421110000000  0000          0000111122466666666


Q ss_pred             HHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc--cccccCCCCCHHHHHHHcCCCchH
Q 005931          252 VRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLD--IYCRNHKNQTALDIIEQAGTNDDA  329 (669)
Q Consensus       252 v~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d--~~~~n~~g~T~L~~a~~~~~~~~~  329 (669)
                      +-.++.+++++|+++  +++++.+|..|||.||..+..-..++.++++ ..|++  ...+|+.|.|||.+|++.|..+..
T Consensus       248 AC~nq~eivrlLl~~--gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L-~~ga~~l~~v~N~qgLTPLtLAaklGk~emf  324 (782)
T KOG3676|consen  248 ACTNQPEIVRLLLAH--GADPNAQDSNGNTVLHMLVIHFVTEMYDLAL-ELGANALEHVRNNQGLTPLTLAAKLGKKEMF  324 (782)
T ss_pred             HHcCCHHHHHHHHhc--CCCCCccccCCChHHHHHHHHHHHHHHHHHH-hcCCCccccccccCCCChHHHHHHhhhHHHH
Confidence            666666666666664  5566666666666666666666666666666 44445  556666666666666666665555


Q ss_pred             HHHHHH
Q 005931          330 TSLKKL  335 (669)
Q Consensus       330 ~~l~~~  335 (669)
                      +.+++.
T Consensus       325 ~~ile~  330 (782)
T KOG3676|consen  325 QHILER  330 (782)
T ss_pred             HHHHHh
Confidence            554444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.62  E-value=6.8e-16  Score=146.64  Aligned_cols=128  Identities=26%  Similarity=0.315  Sum_probs=91.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHH
Q 005931          207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLA  286 (669)
Q Consensus       207 ~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A  286 (669)
                      |..|.+|||+|++.|+..+++.||..+ +.+|..+....||||+|+.+|+.++++.|++.  ..++|+.+..|+||||+|
T Consensus        31 ddhgfsplhwaakegh~aivemll~rg-arvn~tnmgddtplhlaaahghrdivqkll~~--kadvnavnehgntplhya  107 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRG-ARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR--KADVNAVNEHGNTPLHYA  107 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhcc-cccccccCCCCcchhhhhhcccHHHHHHHHHH--hcccchhhccCCCchhhh
Confidence            556666666666666666655555433 55666666666677777777777777766664  567888889999999999


Q ss_pred             HHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 005931          287 VLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNI  342 (669)
Q Consensus       287 ~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~  342 (669)
                      |-.|+..+++-|+ ..|+.++..|++|.|||+.|.    ......++++.+..|..
T Consensus       108 cfwgydqiaedli-~~ga~v~icnk~g~tpldkak----p~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen  108 CFWGYDQIAEDLI-SCGAAVNICNKKGMTPLDKAK----PMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             hhhcHHHHHHHHH-hccceeeecccCCCCchhhhc----hHHHHHHHHHHHHhCCC
Confidence            9999989999888 788899999999999998763    23344566666666643

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.60  E-value=6.1e-16  Score=147.00  Aligned_cols=138  Identities=21%  Similarity=0.210  Sum_probs=124.6

Q ss_pred             HHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931            9 LSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE   88 (669)
Q Consensus         9 L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~e   88 (669)
                      +|--+++|+--.++..++ +....++.-|..|.+|||+||+.||..+|+.|+..|+. ++..|...+||||+|+..|+.+
T Consensus         4 if~wcregna~qvrlwld-~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLD-DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhhhhhcCCeEEEEEEec-CcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHH
Confidence            677788888877777777 56677888899999999999999999999999999999 7889999999999999999999


Q ss_pred             HHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHH
Q 005931           89 VSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAI  150 (669)
Q Consensus        89 ivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~  150 (669)
                      ||+.|++..++++.. |..|.||||+||..|...+.+-|+..++..+ ..++.|.|||..|-
T Consensus        82 ivqkll~~kadvnav-nehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpldkak  141 (448)
T KOG0195|consen   82 IVQKLLSRKADVNAV-NEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHHHHhcccchh-hccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchhhhc
Confidence            999999999998776 9999999999999999999999999998876 56777999998763

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.53  E-value=6.5e-14  Score=116.92  Aligned_cols=89  Identities=35%  Similarity=0.490  Sum_probs=70.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHH
Q 005931          214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQ  293 (669)
Q Consensus       214 Lh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~  293 (669)
                      ||.|++.|+.++++.|+... .+++.    |+||||+|+.+|+.+++++|++.  +.+++.+|..|+||||+|+..++.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~-~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG-ADINL----GNTALHYAAENGNLEIVKLLLEN--GADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT-STTTS----SSBHHHHHHHTTTHHHHHHHHHT--TTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCc-CCCCC----CCCHHHHHHHcCCHHHHHHHHHh--cccccccCCCCCCHHHHHHHcCCHH
Confidence            67888888888888888743 45554    78888888888888888888885  5677888889999999999999999


Q ss_pred             HHHHHHHhcCccccccc
Q 005931          294 FVEYIIKETVLDIYCRN  310 (669)
Q Consensus       294 iv~~Ll~~~~~d~~~~n  310 (669)
                      ++++|+ +.|++++.+|
T Consensus        74 ~~~~Ll-~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLL-EHGADVNIRN   89 (89)
T ss_dssp             HHHHHH-HTTT-TTSS-
T ss_pred             HHHHHH-HcCCCCCCcC
Confidence            999999 5588888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.53  E-value=1.8e-13  Score=121.43  Aligned_cols=123  Identities=34%  Similarity=0.529  Sum_probs=90.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHH
Q 005931           36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLA  115 (669)
Q Consensus        36 ~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A  115 (669)
                      +|..|.||||.|+..|+.+++++|++.+.+ .+..+..|.||||.|+..++.+++++|++.++..... +..+.||+|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHH
Confidence            456788888888888888888888888776 3677778888888888888888888888887655433 56777888888


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 005931          116 CRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREI  161 (669)
Q Consensus       116 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~L  161 (669)
                      +..++.+++++|++.+...+ ..+..+.||++.|+..++.+++++|
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            88888888888777664433 3445566677777777666666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.52  E-value=2.7e-13  Score=120.25  Aligned_cols=124  Identities=35%  Similarity=0.547  Sum_probs=95.7

Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHH
Q 005931          172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA  251 (669)
Q Consensus       172 ~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~A  251 (669)
                      .|.+|.||||+|+..++.+++++|++.+.+.... +..|.+|+|.|+..++.++++.++... ..++..+..|.||+|+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~-~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHH
Confidence            3466788888888888888888888888776443 777888888888888888877777655 35666777788888888


Q ss_pred             HHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          252 VRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       252 v~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      +..++.+++++|++.  +..++..|..|.||+|+|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKH--GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888888888888875  3456667788888888888888888887764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.51  E-value=8.4e-14  Score=116.26  Aligned_cols=85  Identities=27%  Similarity=0.466  Sum_probs=50.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHH
Q 005931           44 LHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDV  123 (669)
Q Consensus        44 Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei  123 (669)
                      ||+||+.|+.+++++|++.+.+. +.    |+||||+|+..|+.+++++|++.|+++... +..|.||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGADINSQ-DKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-B-STTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhccccccc-CCCCCCHHHHHHHcCCHHH
Confidence            56666666666666666655442 11    556666666666666666666666655443 5566666666666666666


Q ss_pred             HHHHHcCCCcc
Q 005931          124 VKLLINQSWLM  134 (669)
Q Consensus       124 v~~Ll~~~~~~  134 (669)
                      +++|++++.+.
T Consensus        75 ~~~Ll~~g~~~   85 (89)
T PF12796_consen   75 VKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHTTT-T
T ss_pred             HHHHHHcCCCC
Confidence            66666665443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.40  E-value=1.7e-12  Score=102.77  Aligned_cols=106  Identities=16%  Similarity=0.259  Sum_probs=94.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC
Q 005931          212 TPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN  291 (669)
Q Consensus       212 tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~  291 (669)
                      ..+.+++++|..+-++..+... .++|..- .|++|||+|+-+|+.+++++|+..  +++++.+|+.|-|||.-|+..|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g-~nVn~~~-ggR~plhyAAD~GQl~ilefli~i--GA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEG-LNVNEIY-GGRTPLHYAADYGQLSILEFLISI--GANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcc-ccHHHHh-CCcccchHhhhcchHHHHHHHHHh--ccccCCccccCCcHHHHHHHHhh
Confidence            3567899999999999988776 5666544 899999999999999999999986  77899999999999999999999


Q ss_pred             HHHHHHHHHhcCcccccccCCCCCHHHHHHH
Q 005931          292 YQFVEYIIKETVLDIYCRNHKNQTALDIIEQ  322 (669)
Q Consensus       292 ~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~  322 (669)
                      .++|++|| +.|+|...+-.+|.+.++.+.+
T Consensus        80 ~~cVklLL-~~GAdrt~~~PdG~~~~eate~  109 (117)
T KOG4214|consen   80 RDCVKLLL-QNGADRTIHAPDGTALIEATEE  109 (117)
T ss_pred             HHHHHHHH-HcCcccceeCCCchhHHhhccH
Confidence            99999999 8889999999999999886543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.38  E-value=3.1e-12  Score=122.10  Aligned_cols=122  Identities=30%  Similarity=0.370  Sum_probs=112.3

Q ss_pred             CHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC
Q 005931            6 AQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG   85 (669)
Q Consensus         6 ~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g   85 (669)
                      ..+|++++-+||.+.+..|+.  ..+.++++|.+|.|+|..|+..|+.++|+.|++.|+|+...++..+.||||+||.+|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs--~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLS--TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHH--HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            356999999999999999998  357789999999999999999999999999999999988888889999999999999


Q ss_pred             CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcC
Q 005931           86 NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ  130 (669)
Q Consensus        86 ~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~  130 (669)
                      +.++.+.|++.|+..... |.-|+|+-.+|+.-|+.++|..+-++
T Consensus        91 n~dvcrllldaGa~~~~v-NsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLV-NSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCccccc-cchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999987655 89999999999999999999876544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.35  E-value=3.5e-12  Score=100.98  Aligned_cols=103  Identities=13%  Similarity=0.202  Sum_probs=79.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN   86 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~   86 (669)
                      .++.++++.|+++.++..+. +. ..++. ...|+||||+|+.+|+.+++++|+..|++ ++.+|..|-|||.-|+..||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~-~g-~nVn~-~~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVN-EG-LNVNE-IYGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHH-cc-ccHHH-HhCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhh
Confidence            45677888999999988887 32 22332 24788999999999999999999988888 78888889999999999999


Q ss_pred             HHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931           87 HEVSAFLMEANPTVATKLNHESQSAFSL  114 (669)
Q Consensus        87 ~eivk~Ll~~~~~~~~~~~~~g~tpL~~  114 (669)
                      .++|++|++.|++-... ..+|.+.+..
T Consensus        80 ~~cVklLL~~GAdrt~~-~PdG~~~~ea  106 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRTIH-APDGTALIEA  106 (117)
T ss_pred             HHHHHHHHHcCccccee-CCCchhHHhh
Confidence            99999999888876544 5566665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.34  E-value=3.9e-11  Score=118.37  Aligned_cols=129  Identities=28%  Similarity=0.404  Sum_probs=108.2

Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCC-----HHHHHHHHhcCC--CCcccccC
Q 005931          170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR-----VKILVAFLSSSP--ASFDRLTT  242 (669)
Q Consensus       170 ~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~-----~e~v~~LL~~~~--~~i~~~d~  242 (669)
                      ...+..+.+++|.++..+..+++++++..+.+++. .+.+|.||||+|+..|+     .++++.|+....  ...+..|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA-KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccc-ccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            45566688889999998888888899999988854 48889999999999988     888888888776  56777788


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE  301 (669)
Q Consensus       243 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~  301 (669)
                      .|.||||+|+..|+.+++++|++.  +.+++..+..|.|+++.|+..++.+++..+++.
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEA--GADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhc--CCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            999999999999999999999886  556677788999999999999999988888854

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=5.2e-12  Score=129.50  Aligned_cols=117  Identities=22%  Similarity=0.188  Sum_probs=71.9

Q ss_pred             HHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931            9 LSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE   88 (669)
Q Consensus         9 L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~e   88 (669)
                      |.+|+.+|.++.|+.++. + -....+.+..|-|+||-|+..||.+||++||+.|.+ +|..|.+|+||||+||..+++.
T Consensus       554 LLDaaLeGEldlVq~~i~-e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIY-E-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHH-h-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchH
Confidence            566666777776666665 1 123445566666777777777777777777776666 6666667777777777777777


Q ss_pred             HHHHHHhhCCccccccCCCCCcHHHHH--HHcCCHHHHHHHH
Q 005931           89 VSAFLMEANPTVATKLNHESQSAFSLA--CRQGHLDVVKLLI  128 (669)
Q Consensus        89 ivk~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~eiv~~Ll  128 (669)
                      +++.|++.|+.+....-.++.|+..-+  -..|..++.+||.
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            777777766666555445555554433  2234444555544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.27  E-value=1.2e-10  Score=114.75  Aligned_cols=131  Identities=28%  Similarity=0.469  Sum_probs=75.9

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCC-----HHHHHHHHcCCCccccccCCCC
Q 005931           68 AAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGH-----LDVVKLLINQSWLMEFEEDSVE  142 (669)
Q Consensus        68 ~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-----~eiv~~Ll~~~~~~~~~~~~~~  142 (669)
                      ...+..+.+++|.++..+..+++++++..+.++ ...+..|.||||+|+..++     .++++.|++.+..         
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~---------  136 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD---------  136 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC---------
Confidence            344555666777777777777776666666666 4446666666666666666     4555555554441         


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCC
Q 005931          143 STPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR  222 (669)
Q Consensus       143 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~  222 (669)
                                             .......|..|.||||+|+..|+.+++++|++.++++... +..|.|+++.|+..++
T Consensus       137 -----------------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~-~~~g~t~l~~a~~~~~  192 (235)
T COG0666         137 -----------------------LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR-NSYGVTALDPAAKNGR  192 (235)
T ss_pred             -----------------------CCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCccc-ccCCCcchhhhcccch
Confidence                                   0333444555555555555555555555555555555544 5555555555555555


Q ss_pred             HHHHHHHHhc
Q 005931          223 VKILVAFLSS  232 (669)
Q Consensus       223 ~e~v~~LL~~  232 (669)
                      .+++..++..
T Consensus       193 ~~~~~~l~~~  202 (235)
T COG0666         193 IELVKLLLDK  202 (235)
T ss_pred             HHHHHHHHhc
Confidence            5555555443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.24  E-value=1.7e-11  Score=91.45  Aligned_cols=54  Identities=37%  Similarity=0.538  Sum_probs=37.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931           40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM   94 (669)
Q Consensus        40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll   94 (669)
                      |.||||+||..|+.+++++|++.+.+ ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56788888888888888888877766 6666777888888888888888887775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.23  E-value=8.6e-12  Score=93.66  Aligned_cols=51  Identities=25%  Similarity=0.357  Sum_probs=31.9

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931          269 TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDII  320 (669)
Q Consensus       269 ~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a  320 (669)
                      ..+++.+|..|+||||+|+..|+.+++++|+ +.++|++.+|.+|+||+|+|
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            4678889999999999999999999999999 88999999999999999986

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.16  E-value=8e-11  Score=87.84  Aligned_cols=54  Identities=31%  Similarity=0.446  Sum_probs=40.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          244 GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       244 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      |+||||+|++.|+.+++++|++.  +.++|.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~--~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH--GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT--TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            67888888888888888888876  5678888888888888888888888888875

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=1.5e-10  Score=119.05  Aligned_cols=120  Identities=21%  Similarity=0.218  Sum_probs=97.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCH
Q 005931           42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL  121 (669)
Q Consensus        42 T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  121 (669)
                      -.|.-|+..|.+|+|+.++..-.| +...|..|-|+||-|+..||.+||++|++.|++++.. |.+|+||||+|+..++.
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~-DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAA-DSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCc-cCCCCchhhhhhhcCch
Confidence            345568889999999999887666 7788999999999999999999999999999998776 89999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHh
Q 005931          122 DVVKLLINQSWLMEFEEDSVESTPIYLAI--SRGHTDIAREILE  163 (669)
Q Consensus       122 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~--~~g~~~iv~~Ll~  163 (669)
                      .+++.|++.|..+-...-.++.|+...|-  ..|..++.++|..
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999887765555555666665542  3455666666654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.08  E-value=1.2e-10  Score=87.41  Aligned_cols=56  Identities=29%  Similarity=0.475  Sum_probs=29.6

Q ss_pred             HHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHH
Q 005931          229 FLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLA  286 (669)
Q Consensus       229 LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A  286 (669)
                      ||+..+.+++..|..|+||||+|+.+|+.+++++|++.  +++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~--g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN--GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC--T--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC--cCCCCCCcCCCCCHHHhC
Confidence            34555678888888888888888888888888888853  778888888888888887

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.07  E-value=8.8e-10  Score=105.52  Aligned_cols=121  Identities=24%  Similarity=0.353  Sum_probs=104.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCC
Q 005931          143 STPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR  222 (669)
Q Consensus       143 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~  222 (669)
                      ..+|.-++..+..+-+..||..... .+.+|.+|.|+|..|+.+|+.+++++|++.|+|++...+..++||||+|+..|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            4588889999999999999886443 478899999999999999999999999999999998888889999999999999


Q ss_pred             HHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          223 VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE  265 (669)
Q Consensus       223 ~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~  265 (669)
                      .++.. ++...|+.....+.-|+|+-..|+.-|+.++|..+-.
T Consensus        92 ~dvcr-llldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   92 QDVCR-LLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             chHHH-HHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99754 5555568888888899999999999999988887754

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.07  E-value=8.4e-10  Score=125.84  Aligned_cols=87  Identities=23%  Similarity=0.289  Sum_probs=81.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCH
Q 005931           42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL  121 (669)
Q Consensus        42 T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  121 (669)
                      +.|+.|+..|+.+.++.|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|++++.. |..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~-d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCcH
Confidence            358899999999999999999988 7889999999999999999999999999999998654 89999999999999999


Q ss_pred             HHHHHHHcC
Q 005931          122 DVVKLLINQ  130 (669)
Q Consensus       122 eiv~~Ll~~  130 (669)
                      +++++|+++
T Consensus       162 ~iv~~Ll~~  170 (664)
T PTZ00322        162 EVVQLLSRH  170 (664)
T ss_pred             HHHHHHHhC
Confidence            999999988

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.05  E-value=8.2e-10  Score=125.91  Aligned_cols=106  Identities=23%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHH
Q 005931          179 PLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYN  258 (669)
Q Consensus       179 ~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~  258 (669)
                      .|+.|+..|+.+.++.|++.|++++.. |.+|.||||+|+.+|+.++++.|+.. +.+++..|..|.||||+|+.+++.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            466666666666666666666666654 66666666666666666666655544 4566666666666666666666666


Q ss_pred             HHHHHHHh-----cCCCCCccCCCCCCcHHHHH
Q 005931          259 AFKFLAES-----FNTCLFHGQDQFGNTVLHLA  286 (669)
Q Consensus       259 iv~~Ll~~-----~~~~~in~~D~~G~TpLh~A  286 (669)
                      ++++|+++     ..+++.+..+..|.+|+..+
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            66666654     11334444555555555444

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.90  E-value=5.5e-09  Score=108.19  Aligned_cols=126  Identities=26%  Similarity=0.358  Sum_probs=111.8

Q ss_pred             cccCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCC-ccccccCCCCCcHHHHH
Q 005931            3 QGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCP-ELVAAENEKLETPLHEA   81 (669)
Q Consensus         3 ~~m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~-~~~~~~n~~g~TpLh~A   81 (669)
                      +....+|.+|+..+|+-.+++.-.  ++..+-.++.+..|.||+|+..|+-|+|+||++++| ++++..|..|+|+||-|
T Consensus       864 ppiseeil~av~~~D~~klqE~h~--~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhka  941 (1004)
T KOG0782|consen  864 PPISEEILRAVLSSDLMKLQETHL--NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKA  941 (1004)
T ss_pred             CCccHHHHHHHHhccHHHHHHHHh--cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHH
Confidence            446778999999999999888776  345567789999999999999999999999999986 46778889999999999


Q ss_pred             HHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCC
Q 005931           82 CCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQS  131 (669)
Q Consensus        82 a~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~  131 (669)
                      +..++..++++|++.|+.+... |..|.||-..|-+.|..|+..||-+..
T Consensus       942 a~~~~r~vc~~lvdagasl~kt-d~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  942 ACQRNRAVCQLLVDAGASLRKT-DSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHhcchHHHHHHHhcchhheec-ccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            9999999999999999998655 999999999999999999999987543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.48  E-value=1.2e-07  Score=97.03  Aligned_cols=94  Identities=21%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      +.++...+.+|+..|.+..++.+.-.+.+ ++.+|.+.+|+||.||..|+++++++|++.-.......|..|+|||.-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            44455566677777777777766666666 56667777777777777777777777776555444555677777777777


Q ss_pred             HcCCHHHHHHHHcCC
Q 005931          117 RQGHLDVVKLLINQS  131 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~  131 (669)
                      .-+|.+++++|-+..
T Consensus       582 ~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hcCcHHHHHHHHHHh
Confidence            777777777766543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.44  E-value=5.6e-07  Score=93.67  Aligned_cols=118  Identities=19%  Similarity=0.193  Sum_probs=98.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHH
Q 005931          214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQ  293 (669)
Q Consensus       214 Lh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~  293 (669)
                      +.-|+..++.--+++.... +.++-.++.+..+.||+|++.|+-++++|+++++....++..|..|.|+||-|+-.++..
T Consensus       870 il~av~~~D~~klqE~h~~-gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            3345555554333444433 456777889999999999999999999999999887788899999999999999999999


Q ss_pred             HHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHH
Q 005931          294 FVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLK  333 (669)
Q Consensus       294 iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~  333 (669)
                      ++.+|+ +.|+.+...|..|.||-.-|.+.++.+.+.+|.
T Consensus       949 vc~~lv-dagasl~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  949 VCQLLV-DAGASLRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHHHHH-hcchhheecccCCCChHHHHHhcCCchHHHHHh
Confidence            999999 888999999999999999999999988776653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.42  E-value=1.4e-07  Score=102.27  Aligned_cols=89  Identities=20%  Similarity=0.290  Sum_probs=73.9

Q ss_pred             hcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc
Q 005931          231 SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQD-QFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCR  309 (669)
Q Consensus       231 ~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D-~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~  309 (669)
                      ..++...+..|..|+|+||+|+..+..+++++|+++  +.+++.+| ..|.||||-|..+|+.+++-+|| ..|+.+..+
T Consensus        39 k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh--Gidv~vqD~ESG~taLHRaiyyG~idca~lLL-~~g~SL~i~  115 (1267)
T KOG0783|consen   39 KSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH--GIDVFVQDEESGYTALHRAIYYGNIDCASLLL-SKGRSLRIK  115 (1267)
T ss_pred             HhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc--CceeeeccccccchHhhHhhhhchHHHHHHHH-hcCCceEEe
Confidence            344555778888899999999998999999999887  67778787 46889999999999999988888 666788889


Q ss_pred             cCCCCCHHHHHHH
Q 005931          310 NHKNQTALDIIEQ  322 (669)
Q Consensus       310 n~~g~T~L~~a~~  322 (669)
                      |++|..||++..+
T Consensus       116 Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  116 DKEGLSPLQFLSR  128 (1267)
T ss_pred             cccCCCHHHHHhh
Confidence            9999999988776

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.37  E-value=3.8e-07  Score=99.11  Aligned_cols=105  Identities=19%  Similarity=0.230  Sum_probs=87.0

Q ss_pred             HHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 005931           13 IVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAF   92 (669)
Q Consensus        13 i~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~   92 (669)
                      ..++...-++.++........+.+|..|+|+||+|+..|..+++++|+++|.++.-.....|+||||.|+..|+++++-.
T Consensus        25 ~tKs~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~l  104 (1267)
T KOG0783|consen   25 KTKSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASL  104 (1267)
T ss_pred             hhcCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHH
Confidence            33444445666666333456788899999999999999999999999999999555555689999999999999999999


Q ss_pred             HHhhCCccccccCCCCCcHHHHHHHc
Q 005931           93 LMEANPTVATKLNHESQSAFSLACRQ  118 (669)
Q Consensus        93 Ll~~~~~~~~~~~~~g~tpL~~A~~~  118 (669)
                      |+.+|..+... |++|.+||..-++-
T Consensus       105 LL~~g~SL~i~-Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  105 LLSKGRSLRIK-DKEGLSPLQFLSRV  129 (1267)
T ss_pred             HHhcCCceEEe-cccCCCHHHHHhhc
Confidence            99999887655 99999999988773

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.35  E-value=8.8e-07  Score=92.48  Aligned_cols=92  Identities=28%  Similarity=0.356  Sum_probs=79.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN   86 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~   86 (669)
                      ++||.++...+.+.+...+..+....++.+|..|+||||+|+..|+.+.++.|+..+++ ...+|+.|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCC
Confidence            45899999999999988777444456788899999999999999999999999999998 78899999999999999999


Q ss_pred             HHHHHHHHhhCCc
Q 005931           87 HEVSAFLMEANPT   99 (669)
Q Consensus        87 ~eivk~Ll~~~~~   99 (669)
                      .+++..++.+...
T Consensus       101 ~q~i~~vlr~~~~  113 (560)
T KOG0522|consen  101 EQIITEVLRHLKY  113 (560)
T ss_pred             HHHHHHHHHHhHH
Confidence            9999888876433

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.35  E-value=1.6e-06  Score=89.30  Aligned_cols=85  Identities=21%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCC
Q 005931          248 FHLAVRFDKYNAFKFLAESFNTCLFHGQD-QFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTN  326 (669)
Q Consensus       248 Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D-~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~  326 (669)
                      ||-.++.++.+..-.|+..  +++.|..+ ..|+||||+|++.|+..-+++|+ -.|+|+++.|.+|.||+++|...|+.
T Consensus       137 LhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~-vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLA-VYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHh-hccCCCCCCCCCCCcHHHHHHhcCch
Confidence            6666677776665555554  33444433 46777777777777777777776 67777777777777777777777777


Q ss_pred             chHHHHHHH
Q 005931          327 DDATSLKKL  335 (669)
Q Consensus       327 ~~~~~l~~~  335 (669)
                      +.++.|.+.
T Consensus       214 ~laeRl~e~  222 (669)
T KOG0818|consen  214 ELAERLVEI  222 (669)
T ss_pred             HHHHHHHHH
Confidence            766666554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.34  E-value=6.1e-07  Score=91.90  Aligned_cols=94  Identities=15%  Similarity=0.120  Sum_probs=83.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHH
Q 005931          242 TYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIE  321 (669)
Q Consensus       242 ~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~  321 (669)
                      .++...+.+|++.|....++.+.-.  +.+++.+|.+.+|+||+|+..|+.+++++|++..++|++.+|..|+||||-|.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            4556789999999999998877654  77899999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHH
Q 005931          322 QAGTNDDATSLKKLFK  337 (669)
Q Consensus       322 ~~~~~~~~~~l~~~l~  337 (669)
                      .-++.+..+.|.+...
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence            9998887777665544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.33  E-value=5.9e-07  Score=57.45  Aligned_cols=30  Identities=40%  Similarity=0.568  Sum_probs=23.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCccccc
Q 005931          278 FGNTVLHLAVLRKNYQFVEYIIKETVLDIYC  308 (669)
Q Consensus       278 ~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~  308 (669)
                      +|+||||+|+..|+.+++++|+ +.|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll-~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLL-EHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHH-HcCCCCCC
Confidence            4788888888888888888888 45677763

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.32  E-value=6.9e-07  Score=58.83  Aligned_cols=33  Identities=33%  Similarity=0.441  Sum_probs=28.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcccccccC
Q 005931          278 FGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNH  311 (669)
Q Consensus       278 ~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~  311 (669)
                      +|+||||+|+..++.+++++|+ +.|+|++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll-~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLL-KHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHH-HTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHH-HCcCCCCCCCC
Confidence            5889999999999999999999 58888888774

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.30  E-value=7.5e-07  Score=56.97  Aligned_cols=27  Identities=41%  Similarity=0.615  Sum_probs=17.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCcc
Q 005931           74 LETPLHEACCQGNHEVSAFLMEANPTV  100 (669)
Q Consensus        74 g~TpLh~Aa~~g~~eivk~Ll~~~~~~  100 (669)
                      |+||||+||+.|+.|++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            566666666666666666666666554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.22  E-value=3.8e-06  Score=86.59  Aligned_cols=89  Identities=21%  Similarity=0.267  Sum_probs=76.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCH
Q 005931           42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL  121 (669)
Q Consensus        42 T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  121 (669)
                      .-||-.++.|+.|..-.|+..|++..-.-...|.||||.|++.|+..=+++|+-+|+++... |.+|.||+.+|-..||-
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~-d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQ-DSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCC-CCCCCcHHHHHHhcCch
Confidence            35899999999999999999998855455578999999999999999999999999998765 99999999999999999


Q ss_pred             HHHHHHHcCC
Q 005931          122 DVVKLLINQS  131 (669)
Q Consensus       122 eiv~~Ll~~~  131 (669)
                      ++.+.|++..
T Consensus       214 ~laeRl~e~~  223 (669)
T KOG0818|consen  214 ELAERLVEIQ  223 (669)
T ss_pred             HHHHHHHHHH
Confidence            8888887643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.17  E-value=5.1e-06  Score=87.22  Aligned_cols=92  Identities=28%  Similarity=0.282  Sum_probs=53.4

Q ss_pred             CHHHHHHHHhCCHHHHHHHHcCcchhhhccc--CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931            6 AQNLSEAIVRNDKQALINLVGCSNKRILLQR--DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC   83 (669)
Q Consensus         6 ~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~--d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~   83 (669)
                      .+.|..|+...|+..+..||......-++..  +.+|.|+||+||+.|++.+.+.|+=.+.+ +..+|..|+|+|.||-.
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhh
Confidence            3456666666666666666653333333333  44556666666666666666666655555 55566666666666666


Q ss_pred             cCCHHHHHHHHhhCC
Q 005931           84 QGNHEVSAFLMEANP   98 (669)
Q Consensus        84 ~g~~eivk~Ll~~~~   98 (669)
                      .|.-|++..|+++|.
T Consensus       704 a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGC  718 (749)
T ss_pred             cccHHHHHHHHHcCC
Confidence            666666666666553

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.15  E-value=4.7e-06  Score=87.15  Aligned_cols=88  Identities=27%  Similarity=0.317  Sum_probs=65.0

Q ss_pred             hHHHHHHHcCCHHHHHHHH-hcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC
Q 005931          212 TPLHLAAINGRVKILVAFL-SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK  290 (669)
Q Consensus       212 tpLh~Aa~~g~~e~v~~LL-~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~  290 (669)
                      -|+|.++.....+-+...+ ......++.+|..|+||||+|+..|+.+.++.|+..  ++++..+|++|++|||.|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a--~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA--GADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc--CCCccccccccccHHHHHHHcC
Confidence            3578877766665554433 334556777888888888888888888888888875  6667778888888888888888


Q ss_pred             CHHHHHHHHHh
Q 005931          291 NYQFVEYIIKE  301 (669)
Q Consensus       291 ~~~iv~~Ll~~  301 (669)
                      +.+++..++.+
T Consensus       100 ~~q~i~~vlr~  110 (560)
T KOG0522|consen  100 NEQIITEVLRH  110 (560)
T ss_pred             CHHHHHHHHHH
Confidence            88877777744

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.07  E-value=5.7e-06  Score=54.41  Aligned_cols=28  Identities=25%  Similarity=0.474  Sum_probs=14.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCccc
Q 005931           74 LETPLHEACCQGNHEVSAFLMEANPTVA  101 (669)
Q Consensus        74 g~TpLh~Aa~~g~~eivk~Ll~~~~~~~  101 (669)
                      |+||||+|+..|+.+++++|+++|+++.
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            4555555555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.97  E-value=2.3e-05  Score=86.88  Aligned_cols=119  Identities=15%  Similarity=0.117  Sum_probs=92.1

Q ss_pred             HHHHHHhCCHHHHHHHHcCcch--hhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931            9 LSEAIVRNDKQALINLVGCSNK--RILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN   86 (669)
Q Consensus         9 L~~Ai~~gd~~~l~~ll~~~~~--~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~   86 (669)
                      ...|+..||...+++.++....  -.++.+|.-|.++||+|+.+.+.|+++.|++...+.        ..+|.+|++.|.
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~  100 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGS  100 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHH
Confidence            5678999999999999984333  356777999999999999999999999999876542        358889999999


Q ss_pred             HHHHHHHHhhCCccc---------cccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 005931           87 HEVSAFLMEANPTVA---------TKLNHESQSAFSLACRQGHLDVVKLLINQSWLME  135 (669)
Q Consensus        87 ~eivk~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~  135 (669)
                      .++|+.++.+-....         ...-..+.||+.+||..++.|+++.|+.++....
T Consensus       101 v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  101 VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            999999998543321         1112346788888888888888888888776554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.84  E-value=5.3e-05  Score=84.04  Aligned_cols=122  Identities=20%  Similarity=0.181  Sum_probs=86.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCc---cccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           40 LNTALHLAARFGHVELVTEITKLCPE---LVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~---~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      +.--...||..|+.-.|+..++....   ..|..|.-|.++|+.|+.+.|.|+.++|++++...        ..+|.+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHH
Confidence            34456778999999999888886433   25677888899999999999999999999875443        45788899


Q ss_pred             HcCCHHHHHHHHcCCCccc---------cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc
Q 005931          117 RQGHLDVVKLLINQSWLME---------FEEDSVESTPIYLAISRGHTDIAREILEVRPRFA  169 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~~~~~---------~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~  169 (669)
                      ..|..+.|+.++++.....         ...-..+.||+.+|+..+++|+++.|++++...+
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            9999999999887654321         1122234566666666666666666666655543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.77  E-value=3.4e-05  Score=87.98  Aligned_cols=91  Identities=23%  Similarity=0.252  Sum_probs=79.1

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931          241 TTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDII  320 (669)
Q Consensus       241 d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a  320 (669)
                      -..|.++||.|+.++...+.++|++.  +.++|..|..|+||||.+...|+...+..|+ +.|+++++.|.+|++|+++|
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~--ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll-~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQN--GADVNALDSKGRTPLHHATASGHTSIACLLL-KRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhc--CCcchhhhccCCCcchhhhhhcccchhhhhc-cccccccccCccCcchhhHH
Confidence            34689999999999999999999996  6679999999999999999999999999999 69999999999999999999


Q ss_pred             HHcCCCchHHHHHHH
Q 005931          321 EQAGTNDDATSLKKL  335 (669)
Q Consensus       321 ~~~~~~~~~~~l~~~  335 (669)
                      .... ......+..+
T Consensus       730 ~~~~-~~d~~~l~~l  743 (785)
T KOG0521|consen  730 MEAA-NADIVLLLRL  743 (785)
T ss_pred             hhhc-cccHHHHHhh
Confidence            8884 3333334333

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.64  E-value=0.00013  Score=76.91  Aligned_cols=91  Identities=15%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCcc---ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC
Q 005931           43 ALHLAARFGHVELVTEITKLCPEL---VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG  119 (669)
Q Consensus        43 ~Lh~Aa~~g~~e~vk~Ll~~~~~~---~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  119 (669)
                      -|.-|+...++..+-.|+.+|...   ....+.+|.|+||+||+.|++.+.++|+=+|.++... |..|+|+|.+|-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~r-da~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMAR-DAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceec-ccCCchhhhhHhhcc
Confidence            355566666677777777766431   2233456678888888888888888888877776554 788888888888888


Q ss_pred             CHHHHHHHHcCCCcc
Q 005931          120 HLDVVKLLINQSWLM  134 (669)
Q Consensus       120 ~~eiv~~Ll~~~~~~  134 (669)
                      .-+++..|++++...
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            888888888877543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.55  E-value=0.00023  Score=71.44  Aligned_cols=55  Identities=35%  Similarity=0.488  Sum_probs=30.5

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 005931           78 LHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL  133 (669)
Q Consensus        78 Lh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~  133 (669)
                      |++||+.|+.+.|+.|++.|.+++.. |....+||++|+..||.++|++|+++|+.
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~v-D~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAV-DRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchh-hcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            55555555555555555555554443 55555555555555555555555555543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.54  E-value=8.9e-05  Score=84.09  Aligned_cols=127  Identities=20%  Similarity=0.125  Sum_probs=91.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHH
Q 005931          207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLA  286 (669)
Q Consensus       207 ~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A  286 (669)
                      ...|++.+|+++..+....+..+++-.+......|.+|...+|. |..++++++-+++.. .+..++.+|..|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~-~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISA-DGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEee-cccccccccCCCCcccchH
Confidence            45678888888888888888888775344455567777777777 445556666555543 4667788888899999999


Q ss_pred             HHcCCHHHHHHHHHhcC-----cccccccCCCCCHHHHHHHcCCCchHHHHHHH
Q 005931          287 VLRKNYQFVEYIIKETV-----LDIYCRNHKNQTALDIIEQAGTNDDATSLKKL  335 (669)
Q Consensus       287 ~~~~~~~iv~~Ll~~~~-----~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~  335 (669)
                      +.+|+..++..|+..+.     .|+...+-.|.|+-++|...++....-.|.+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            98888888888883322     23445556799999999988888777665443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.43  E-value=0.00018  Score=81.66  Aligned_cols=129  Identities=14%  Similarity=0.059  Sum_probs=103.5

Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHhc-CCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHH
Q 005931          170 GKTDKNGFSPLHYASSIGNVNMTKLLLNH-NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVF  248 (669)
Q Consensus       170 ~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~-g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~L  248 (669)
                      ......|.+.+|+++..++..+++.+++. |..... .|.+|.-.+|+ |..++.+....++.-.+..++.+|.+|+|||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e-ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE-LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh-hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCccc
Confidence            44456789999999999999999999986 444333 37888888888 4456667767777778889999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcC--CC--CCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          249 HLAVRFDKYNAFKFLAESFN--TC--LFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       249 h~Av~~~~~~iv~~Ll~~~~--~~--~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      |+|+.+|+..++..|++.+.  +.  +....+..|-|+-.+|-.+|+..+..+|-+
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            99999999999999997644  22  333445679999999999999888887763

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.43  E-value=0.00028  Score=64.51  Aligned_cols=65  Identities=22%  Similarity=0.220  Sum_probs=48.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCC
Q 005931           67 VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQS  131 (669)
Q Consensus        67 ~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~  131 (669)
                      ++.+|..|+|||+.|+..|+.+.+.+|+++|.......+..|.+++.+|-+.|+.+++..|.+..
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            56777778888888888888888888887775555555777777777777777777777777653

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.42  E-value=0.00025  Score=71.21  Aligned_cols=73  Identities=22%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        42 T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      --|-.||+.|..+.|++|++.|.+ +|..|....+||.+|+..||.++|++|+++|+--... ..+|...++-|.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd-tf~G~RC~YgaL  110 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD-TFDGDRCHYGAL  110 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc-ccCcchhhhhhh
Confidence            348899999999999999998888 8999999999999999999999999999999865433 556766655443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.38  E-value=0.0004  Score=63.47  Aligned_cols=70  Identities=24%  Similarity=0.090  Sum_probs=64.3

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCcc
Q 005931           31 RILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV  100 (669)
Q Consensus        31 ~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~  100 (669)
                      ..++.+|..|+|+|..|+..|+.+.|.+|+..+...+...|..|.+++.+|-+.|..++++.|.+...+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4578999999999999999999999999999997779999999999999999999999999999975443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.28  E-value=0.00024  Score=81.23  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=40.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC
Q 005931           40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG  119 (669)
Q Consensus        40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  119 (669)
                      |.|+||.|+..|..-.++.|++.+++ ++..|..|+||||.+...|+...+..|++++++.... +.+|.+|+++|....
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~-~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAF-DPDGKLPLDIAMEAA  733 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccccccc-CccCcchhhHHhhhc
Confidence            34555555555555555555555554 4555555555555555555555555555555444333 445555555554443


Q ss_pred             CH
Q 005931          120 HL  121 (669)
Q Consensus       120 ~~  121 (669)
                      +.
T Consensus       734 ~~  735 (785)
T KOG0521|consen  734 NA  735 (785)
T ss_pred             cc
Confidence            33

>smart00248 ANK ankyrin repeats

Probab=95.60  E-value=0.019  Score=35.08  Aligned_cols=25  Identities=40%  Similarity=0.531  Sum_probs=14.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCC
Q 005931           74 LETPLHEACCQGNHEVSAFLMEANP   98 (669)
Q Consensus        74 g~TpLh~Aa~~g~~eivk~Ll~~~~   98 (669)
                      |.||+|+|+..|+.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4555555555555555555555544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.44  E-value=0.025  Score=59.48  Aligned_cols=66  Identities=18%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             CCHHHHHHHHHhcCCC----CCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHH
Q 005931          255 DKYNAFKFLAESFNTC----LFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIE  321 (669)
Q Consensus       255 ~~~~iv~~Ll~~~~~~----~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~  321 (669)
                      .-.+.+++|.+..-..    .....|..-.|+||+|+..|..++|.+||++ |+|+..+|..|.||.+++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccc
Confidence            3466778887753211    1122455578999999999999999999955 5999999999999999876

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.28  E-value=0.17  Score=46.71  Aligned_cols=136  Identities=17%  Similarity=0.119  Sum_probs=63.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHH
Q 005931           77 PLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTD  156 (669)
Q Consensus        77 pLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~  156 (669)
                      .|.-|+..+...|++..-+.....    -...++.+..||+..+.|+|+|+-++-...+      -.+.+..|....+.+
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i~~------~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHIYN------PEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCCCC------chhhhhhhhhccchh
Confidence            445555555555555554432211    1234455566666666666666643322111      233455555555554


Q ss_pred             HHH----HHHhcCCcccCCCCCC--CChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931          157 IAR----EILEVRPRFAGKTDKN--GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL  230 (669)
Q Consensus       157 iv~----~Ll~~~~~~~~~~d~~--g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL  230 (669)
                      +..    .+.+..... ...|..  -..-|..|+.+|....+...+++|.+++.       +.|..|+..++..++..++
T Consensus       119 LyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHhh
Confidence            421    111111000 000000  01235566666666666666666655542       4566666666666655544

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=94.71  E-value=0.047  Score=33.14  Aligned_cols=26  Identities=46%  Similarity=0.779  Sum_probs=15.6

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCc
Q 005931          176 GFSPLHYASSIGNVNMTKLLLNHNKD  201 (669)
Q Consensus       176 g~t~Lh~Aa~~g~~eiv~~Ll~~g~~  201 (669)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45566666666666666666665553

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.31  E-value=0.36  Score=44.61  Aligned_cols=141  Identities=12%  Similarity=0.131  Sum_probs=97.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC
Q 005931           40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG  119 (669)
Q Consensus        40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  119 (669)
                      -.-.|..|+.++.+.++++.-+...+.    -...++.+-.||+..+.|+|+|+-+.-.      -.+-.+.+..|....
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~------i~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLH------IYNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccC------CCCchhhhhhhhhcc
Confidence            346678899999999998876543221    1245778899999999999999954221      123356788899988


Q ss_pred             CHHHHHH----HHcCCCcc-ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHH
Q 005931          120 HLDVVKL----LINQSWLM-EFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL  194 (669)
Q Consensus       120 ~~eiv~~----Ll~~~~~~-~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~  194 (669)
                      +.++...    ++++.... +......-..-|..|+..|..+.+...++.+...       ..+.|..|+..++..++.+
T Consensus       116 DlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~-------~~~vls~Av~ynhRkIL~y  188 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-------DIIVLSQAVKYNHRKILDY  188 (192)
T ss_pred             chhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-------cHHHHHHHHHhhHHHHHHH
Confidence            8876432    22221111 0000111123577899999999999999988765       2289999999999999998


Q ss_pred             HHh
Q 005931          195 LLN  197 (669)
Q Consensus       195 Ll~  197 (669)
                      ++.
T Consensus       189 fi~  191 (192)
T PF03158_consen  189 FIR  191 (192)
T ss_pred             hhc
Confidence            874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.61  E-value=0.093  Score=55.31  Aligned_cols=63  Identities=17%  Similarity=0.210  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhCCcc-----ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           53 VELVTEITKLCPEL-----VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        53 ~e~vk~Ll~~~~~~-----~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      ...+++|.+++.+.     +...+.---|+||+|+..|.-++|.++|+.|.+... .|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~-kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST-KDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh-cccCCCCcccccc
Confidence            55667777765432     122233346788888888888888888888855544 4888888887776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.40  E-value=1  Score=42.99  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=30.5

Q ss_pred             HHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhC
Q 005931            9 LSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLC   63 (669)
Q Consensus         9 L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~   63 (669)
                      |-+||..-+.+.+..++. ...        .-.++|-+|..++..+++-+|+...
T Consensus       157 ledAV~AsN~~~i~~~Vt-dKk--------dA~~Am~~si~~~K~dva~~lls~f  202 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVT-DKK--------DAHQAMWLSIGNAKEDVALYLLSKF  202 (284)
T ss_pred             HHHHHhhcCHHHHHHHhc-chH--------HHHHHHHHHhcccHHHHHHHHHhhc
Confidence            566777777777777666 211        1246777777777778887777653

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=89.10  E-value=11  Score=39.04  Aligned_cols=93  Identities=11%  Similarity=0.076  Sum_probs=46.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCC--cccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCC-------CCccCCC
Q 005931          207 NKDGYTPLHLAAINGRVKILVAFLSSSPAS--FDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTC-------LFHGQDQ  277 (669)
Q Consensus       207 ~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~--i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~-------~in~~D~  277 (669)
                      |..|...+..+...+..+....++..-...  .-..++.|...+..+......+.-+.+++..-..       .-=..|.
T Consensus       198 d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~  277 (322)
T cd07920         198 DQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQ  277 (322)
T ss_pred             CCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCC
Confidence            555655566655555543322222211111  1133566666666666665533333333322110       1124678


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHH
Q 005931          278 FGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       278 ~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      .|+-.+..+.........+.++
T Consensus       278 ~Gn~Viq~~l~~~~~~~~~~i~  299 (322)
T cd07920         278 YGNYVIQTALDVAKEEQRELLV  299 (322)
T ss_pred             cccHHHHHHHHhCCHHHHHHHH
Confidence            8888888888777655444444

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=88.08  E-value=9.2  Score=39.74  Aligned_cols=270  Identities=11%  Similarity=0.060  Sum_probs=133.6

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHh-CCcc-ccccCCCCCcHHHHHHHcCCHHHHHHHHhh--CCccccccCCCCCc
Q 005931           35 QRDASLNTALHLAARFGHVELVTEITKL-CPEL-VAAENEKLETPLHEACCQGNHEVSAFLMEA--NPTVATKLNHESQS  110 (669)
Q Consensus        35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~-~~~~-~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~--~~~~~~~~~~~g~t  110 (669)
                      ..|..|.-.|.-+...+..+....+++. .+.. .-..|..|+-.+.-....+..+-...+++.  +.-..-..+..|.-
T Consensus        16 ~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~   95 (322)
T cd07920          16 AKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCR   95 (322)
T ss_pred             cCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHH
Confidence            3488899999999999998888877775 1221 223455666666666666665544444432  11111112333333


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHH
Q 005931          111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN  190 (669)
Q Consensus       111 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~e  190 (669)
                      .+..+...+..+....+++.                              +...-..  -..|..|...+..+...+..+
T Consensus        96 vlqkll~~~~~~~~~~i~~~------------------------------l~~~~~~--L~~d~~gn~Vvq~~l~~~~~~  143 (322)
T cd07920          96 VIQKLLESISEEQISLLVKE------------------------------LRGHVVE--LVKDQNGNHVIQKCIEKFPPE  143 (322)
T ss_pred             HHHHHHHhcCHHHHHHHHHH------------------------------HHHCHHH--HhhcccccHHHHHHHHhCCHH
Confidence            33333333332222222211                              1100000  112344444444444444333


Q ss_pred             HHHHHHhcC--CccccccCCCCChHHHHHHHcCCHHHHHHHHhcCC--CCcccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          191 MTKLLLNHN--KDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP--ASFDRLTTYGETVFHLAVRFDKYNAFKFLAES  266 (669)
Q Consensus       191 iv~~Ll~~g--~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~--~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~  266 (669)
                      ..+.+++.-  .-.....+..|...+.........+....++..--  ...-..|..|...+..++..+..+..+.+++.
T Consensus       144 ~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~  223 (322)
T cd07920         144 DLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEK  223 (322)
T ss_pred             HHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHH
Confidence            333322210  01111224455555555554443332222222110  01113467899999999998877666666554


Q ss_pred             cCCCCC-ccCCCCCCcHHHHHHHcCCH----HHHHHHHHhc----CcccccccCCCCCHHHHHHHcCCCchHHHHHHHH
Q 005931          267 FNTCLF-HGQDQFGNTVLHLAVLRKNY----QFVEYIIKET----VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLF  336 (669)
Q Consensus       267 ~~~~~i-n~~D~~G~TpLh~A~~~~~~----~iv~~Ll~~~----~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l  336 (669)
                      ..+... -..+..|...+..+...+..    .+++.|+...    ...--+.|..|.-.+.-+...........+...+
T Consensus       224 l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l  302 (322)
T cd07920         224 LLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAI  302 (322)
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHH
Confidence            322111 24678999988888887754    3444444221    2223456778887777777766644334444433

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.28  E-value=1.1  Score=35.52  Aligned_cols=46  Identities=20%  Similarity=0.289  Sum_probs=25.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcC
Q 005931           77 PLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ  130 (669)
Q Consensus        77 pLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~  130 (669)
                      -+..|+.+|+.||++.+++.+...        ...+..|+...+.+++++|+++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            455666666666666665433110        2345566666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=85.88  E-value=11  Score=34.46  Aligned_cols=33  Identities=27%  Similarity=0.270  Sum_probs=27.1

Q ss_pred             ccccCCCccceeehhhhhHHHHHHHHHHHHHHh
Q 005931          505 KSLVGRTKAFKIFEISNNIALFTSLSIVIILVS  537 (669)
Q Consensus       505 ~~~~~~~~~f~~F~~~~~~a~~~S~~~~~~l~~  537 (669)
                      +..+.+.++|+.|++.|.++...|+..++.-+.
T Consensus        35 ~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~   67 (154)
T TIGR01569        35 KAKFSDLPAFVYFVVANAIACGYSLLSLVVSIF   67 (154)
T ss_pred             eeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677889999999999999999988776544

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF14126 DUF4293: Domain of unknown function (DUF4293)

Probab=85.74  E-value=28  Score=31.71  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 005931          522 NIALFTSLSIVIILVSIIPFERKKLMRLLVITH  554 (669)
Q Consensus       522 ~~a~~~S~~~~~~l~~~~~~~~~~~~~~l~~~~  554 (669)
                      .+...+.+++++.+++++.+++|...-.+....
T Consensus        55 ~l~il~~l~~~lal~aIFlyKnR~lQ~~L~~~n   87 (149)
T PF14126_consen   55 PLFILLVLSAILALIAIFLYKNRKLQIRLCVLN   87 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            344445555566677888888777665555533

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.24  E-value=1.7  Score=34.55  Aligned_cols=48  Identities=23%  Similarity=0.207  Sum_probs=37.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhh
Q 005931           41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA   96 (669)
Q Consensus        41 ~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~   96 (669)
                      ...|..|+..|+.|+++.+++.+..        ....+..|+..-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4568888999999999888865422        14568889999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]

Probab=84.51  E-value=23  Score=40.18  Aligned_cols=67  Identities=18%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             HHHHHH-HHHHHHHHhhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhCCCC
Q 005931          557 MWVSIS-FMATAYIAATRITVPDDRGTGWVTDSLLATGAGTLGFLFLYLGVELIRHRLRKLEWRAKKLGKQS  627 (669)
Q Consensus       557 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (669)
                      ..++++ -|.++.+.|++...+.    .|..+.++....-.+=.+|+++.+.+.++..|+..+|....++++
T Consensus       518 ~~l~L~~lLGlTW~fgi~s~~~~----~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~  585 (610)
T KOG4193|consen  518 SALALLFLLGLTWIFGIFSWLPG----TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGD  585 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCC
Confidence            344444 3556777777777653    244444444444556667888888888888888877777755544

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=83.19  E-value=6.4  Score=37.79  Aligned_cols=116  Identities=17%  Similarity=0.109  Sum_probs=62.8

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCcc--ccccCCCCCcHHHHHHH--cC
Q 005931           78 LHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM--EFEEDSVESTPIYLAIS--RG  153 (669)
Q Consensus        78 Lh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~--~~~~~~~~~t~L~~A~~--~g  153 (669)
                      |-.|+..-|.+-+.-++....+        ..+++-+|+.++..+++.+|+.+-.-.  +...-..+..-+.++..  ..
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a  228 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSA  228 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCC
Confidence            4555555555555555442221        224555555555566666665432110  00000111112333322  23


Q ss_pred             CHHHHHHHHhcCCcccC---CCCCCCChHHHHHHhcCCHHHHHHHHhcCCc
Q 005931          154 HTDIAREILEVRPRFAG---KTDKNGFSPLHYASSIGNVNMTKLLLNHNKD  201 (669)
Q Consensus       154 ~~~iv~~Ll~~~~~~~~---~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~  201 (669)
                      +..+++++++.|-..++   .+-..|.|-|.-|...++.+++..|+++|+-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            45677777776644332   2345688999999999999999999999874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>COG2322 Predicted membrane protein [Function unknown]

Probab=82.77  E-value=38  Score=30.95  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=15.4

Q ss_pred             hhhHHHHHHHHHHHHHhccccCCC
Q 005931          471 RNTIILVAILIATVTYTGGISPPG  494 (669)
Q Consensus       471 ~~~~~~va~liatvtf~a~~~~Pg  494 (669)
                      ..+.+.+|.++..++=--++.|||
T Consensus        11 ~~~vl~~a~va~~~~av~~~~P~g   34 (177)
T COG2322          11 LAAVLGLASVAVVVIAVLAFSPAG   34 (177)
T ss_pred             cHHHHHHHHHHHHHHHHHhhCCCC
Confidence            445566666666666666778777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	669
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-19
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-12
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-14
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-12
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-12
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-12
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-11
1uoh_A	226	Human Gankyrin Length = 226		3e-11
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-11
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-10
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		6e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-07
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-09
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		5e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		9e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		8e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-06
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-06
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		8e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-05
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		7e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		3e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		5e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		6e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 167/390 (42%), Gaps = 67/390 (17%)
Query: 33  LLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKL---ETPLHEAC 82
           LLQR AS N       T LH+AAR GH    TE+ K   +  A  N K    +TPLH A 
Sbjct: 33  LLQRGASPNVSNVKVETPLHMAARAGH----TEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88
Query: 83  CQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDS 140
             G+  +   L+E  ANP +AT   H   +   +A R+GH++ V  L+ +    E  +  
Sbjct: 89  RIGHTNMVKLLLENNANPNLATTAGH---TPLHIAAREGHVETVLALLEK----EASQAC 141
Query: 141 VES---TPIYLAISRGHTDIAREILE--VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
           +     TP+++A   G   +A  +LE    P  AG   KNG +PLH A    N+++ KLL
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG---KNGLTPLHVAVHHNNLDIVKLL 198
Query: 196 L----------------------NHNKDLA---LQYNKD-------GYTPLHLAAINGRV 223
           L                       +  ++A   LQY          G TPLHLAA  G  
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVL 283
           + +VA L S  A+ +     G T  HL  +         L +  +  +     + G T L
Sbjct: 259 E-MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK--HGVMVDATTRMGYTPL 315
Query: 284 HLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIG 343
           H+A    N + V+++++    D+  +     + L    Q G  D  T L K   +   + 
Sbjct: 316 HVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Query: 344 SPELSPPAAEVKLTLESPINLVKVTSSSTS 373
           S   +P A   +L   S  +++KV +  TS
Sbjct: 375 SDGTTPLAIAKRLGYISVTDVLKVVTDETS 404

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 109 QSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRF 168
           ++   LA R GHL+VVKLL+     +   +D    TP++LA   GH ++ + +LE     
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 169 AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA 228
             K DKNG +PLH A+  G++ + KLLL    D+  + +K+G TPLHLAA NG ++++  
Sbjct: 62  NAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKL 119
Query: 229 FLSS 232
            L +
Sbjct: 120 LLEA 123

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
           TP++LA   GH ++ + +LE       K DKNG +PLH A+  G++ + KLLL    D+ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 204 LQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
            + +K+G TPLHLAA NG +++ V  L  + A  +     G T  HLA R       K L
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 264 AES 266
            E+
Sbjct: 121 LEA 123

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
           NG +PLH A+  G++ + KLLL    D+  + +K+G TPLHLAA NG +++ V  L  + 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEV-VKLLLEAG 58
Query: 235 ASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQF 294
           A  +     G T  HLA R       K L E+      + +D+ G T LHLA    + + 
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 295 VEYIIK 300
           V+ +++
Sbjct: 117 VKLLLE 122

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 112/220 (50%), Gaps = 8/220 (3%)
Query: 70  ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129
           E++   +PLH A   G+ ++   L++A   + T  + + ++    A    HL+ VK LI 
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 130 QSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNV 189
              L++  +D+  ST ++LA  +GH ++ + +L          D  G++P+ +A+   +V
Sbjct: 66  AGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 190 NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH 249
           ++ KLLL+   D+ ++ N++    LH AA +G V I    L ++      +  +G++  H
Sbjct: 125 DLVKLLLSKGSDINIRDNEENIC-LHWAAFSGCVDI-AEILLAAKCDLHAVNIHGDSPLH 182
Query: 250 LAVRFDKYNAFK-FLAESFNTCLFHGQDQFGNTVLHLAVL 288
           +A R ++Y+    FL+   +  L   +++ G T L  A L
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTL---KNKEGETPLQCASL 219

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 212 TPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCL 271
           +PLH AA  G V I    L  + A+ D  +    T    A   +   A K+L ++    L
Sbjct: 13  SPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GAL 69
Query: 272 FHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
              +D  G+T LHLA  + +Y+ V+Y++    +D+ C++    T +
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 96  ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT 155
           A+ ++AT+ + +S++A   AC  GH ++V+ L+ Q  +   ++D    +P+++A S G  
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRD 86
Query: 156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL--NHNKDLALQYNKDGYTP 213
           +I + +L V+       ++NG +PLHYA+S     +  +LL    N D    Y+    T 
Sbjct: 87  EIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TA 142
Query: 214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
           +H AA  G +K +V  L    AS +   T G T  HLA   ++    KFL
Sbjct: 143 MHRAAAKGNLK-MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 119 GHLDVVK--LLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
           G LD +K  +L ++S     ++DS   T ++ A S GHT+I   +L++      K D  G
Sbjct: 17  GKLDELKERILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-G 73
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
           +SPLH A+S G   + K LL     +    N++G TPLH AA   R +I V  L    A+
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG-AN 131
Query: 237 FDRLTTYGETVFHLAV---RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQ 293
            D    Y  T  H A         +   F   S N      QD  GNT LHLA   +  +
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-----QDTEGNTPLHLACDEERVE 186
Query: 294 FVEYIIKETVLDIYCRNHKNQTALDI 319
             ++++ +    IY  N + +T L +
Sbjct: 187 EAKFLVTQGA-SIYIENKEEKTPLQV 211

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 96  ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT 155
           A+ ++AT+ + +S++A   AC  GH ++V+ L+ Q  +   ++D    +P+++A S G  
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGXD 86
Query: 156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL--NHNKDLALQYNKDGYTP 213
           +I + +L V+       ++NG +PLHYA+S     +  +LL    N D    Y+    T 
Sbjct: 87  EIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TA 142
Query: 214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
           +H AA  G +K +V  L    AS +   T G T  HLA   ++    KFL
Sbjct: 143 MHRAAAKGNLK-MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 119 GHLDVVK--LLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
           G LD +K  +L ++S     ++DS   T ++ A S GHT+I   +L++      K D  G
Sbjct: 17  GKLDELKERILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-G 73
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
           +SPLH A+S G   + K LL     +    N++G TPLH AA   R +I V  L    A+
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG-AN 131
Query: 237 FDRLTTYGETVFHLAV---RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQ 293
            D    Y  T  H A         +   F   S N      QD  GNT LHLA   +  +
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-----QDTEGNTPLHLACDEERVE 186
Query: 294 FVEYIIKETVLDIYCRNHKNQTALDI 319
             ++++ +    IY  N + +T L +
Sbjct: 187 EAKFLVTQGA-SIYIENKEEKTPLQV 211

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
           RIL+   A +N       T LHLAAR GH+E+V  + K   + V A+++   TPLH A  
Sbjct: 19  RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAR 77
Query: 84  QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
           +G+ E+   L++A   V  K + +  +   LA R+GHL++V++L+     +   +D    
Sbjct: 78  EGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGK 135
Query: 144 TPIYLAISRGHTDIAREILE 163
           TP  LAI  GH DIA E+L+
Sbjct: 136 TPFDLAIREGHEDIA-EVLQ 154

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           L  +R   D    IL          DK+G++PLH A+  G++ + ++LL    D+  + +
Sbjct: 7   LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-D 65
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
           KDGYTPLHLAA  G ++I+   L +  A  +     G T  HLA R       + L ++ 
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA- 123
Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
                + QD+FG T   LA+   +    E + K
Sbjct: 124 -GADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G  +  ++L+ +  D+  + +KDGYTPLHLAA  G ++I+   L +  A  +    
Sbjct: 9   AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 66
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            G T  HLA R       + L ++      + +D+ G T LHLA    + + VE ++K  
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKK 334
             D+  ++   +T  D+  + G  D A  L+K
Sbjct: 125 A-DVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 11/140 (7%)
Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
           RIL+   A +N       T LHLAAR GH+E+V  + K   + V A+++   TPLH A  
Sbjct: 19  RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAR 77
Query: 84  QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
           +G+ E+   L++A   V  K + +  +   LA R+GHL++V++L+     +   +D    
Sbjct: 78  EGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGK 135
Query: 144 TPIYLAISRGHTDIAREILE 163
           TP  LAI  G+ DIA E+L+
Sbjct: 136 TPFDLAIDNGNEDIA-EVLQ 154

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           L  +R   D    IL          DK+G++PLH A+  G++ + ++LL    D+  + +
Sbjct: 7   LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-D 65
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
           KDGYTPLHLAA  G ++I+   L +  A  +     G T  HLA R       + L ++ 
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA- 123
Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
                + QD+FG T   LA+   N    E + K
Sbjct: 124 -GADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G  +  ++L+ +  D+  + +KDGYTPLHLAA  G ++I+   L +  A  +    
Sbjct: 9   AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 66
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            G T  HLA R       + L ++      + +D+ G T LHLA    + + VE ++K  
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKK 334
             D+  ++   +T  D+    G  D A  L+K
Sbjct: 125 A-DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 12/142 (8%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGK--- 171
           A R G  D V++L+     +    D    TP++L ++ GH     EI+EV  ++A     
Sbjct: 21  AARAGQDDEVRILMANGADVN-ANDWFGITPLHLVVNNGHL----EIIEVLLKYAADVNA 75
Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDL-ALQYNKDGYTPLHLAAINGRVKILVAFL 230
           +DK+G++PLH A+  G++ + ++LL +  D+ A+ Y   GYTPLHLAA +G ++I+   L
Sbjct: 76  SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ--GYTPLHLAAEDGHLEIVEVLL 133
Query: 231 SSSPASFDRLTTYGETVFHLAV 252
               A  +    +G+T F +++
Sbjct: 134 KYG-ADVNAQDKFGKTAFDISI 154

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 74  LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
           L   L EA   G  +    LM AN       +H   +   LA   GHL++V++L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILM-ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
           +   +DS+  TP++LA  RGH ++  E+L          D NGF+PLH A++IG++ + +
Sbjct: 73  VN-ADDSLGVTPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVE 130
Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAING 221
           +LL H  D+  Q +K G T   ++  NG
Sbjct: 131 VLLKHGADVNAQ-DKFGKTAFDISIDNG 157

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G  +  ++L+ +  D+    +  G+TPLHLAA  G ++I+   L +  A  +   +
Sbjct: 21  AARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNG-ADVNADDS 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            G T  HLA         + L +  N    +  D  G T LHLA    + + VE ++K  
Sbjct: 79  LGVTPLHLAADRGHLEVVEVLLK--NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
             D+  ++   +TA DI    G  D A  L+KL
Sbjct: 137 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 80/178 (44%), Gaps = 43/178 (24%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           EVR   A   D N     G +PLH A+ IG+  + ++LL H  D+  + + DG+TPLHLA
Sbjct: 29  EVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQ 277
           A NG ++I+   L            YG  V                         + QD 
Sbjct: 88  ADNGHLEIVEVLLK-----------YGADV-------------------------NAQDA 111
Query: 278 FGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
           +G T LHLA  R + + VE ++K    D+  ++   +TA DI    G  D A  L+KL
Sbjct: 112 YGLTPLHLAADRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 119 GHLDVVK--LLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
           G L+ +K  +L ++S     ++DS   T ++ A S GHT+I   +L++      K D  G
Sbjct: 18  GKLEELKESILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-G 74
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
           +SPLH A+S G   + K LL     +    N++G TPLH AA   R +I V  L    A+
Sbjct: 75  WSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG-AN 132
Query: 237 FDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVE 296
            D    Y  T  H A           L   +     + QD  GNT LHLA   +  +  +
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILL--YYKASTNIQDTEGNTPLHLACDEERVEEAK 190
Query: 297 YIIKETVLDIYCRNHKNQTALDI 319
            ++ +    IY  N + +T L +
Sbjct: 191 LLVSQGA-SIYIENKEEKTPLQV 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 119 GHLDVVK--LLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
           G L+ +K  +L ++S     ++DS   T ++ A S GHT+I   +L++      K D  G
Sbjct: 17  GKLEELKESILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-G 73
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
           +SPLH A+S G   + K LL     +    N++G TPLH AA   R +I V  L    A+
Sbjct: 74  WSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG-AN 131
Query: 237 FDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVE 296
            D    Y  T  H A           L   +     + QD  GNT LHLA   +  +  +
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILL--YYKASTNIQDTEGNTPLHLACDEERVEEAK 189
Query: 297 YIIKETVLDIYCRNHKNQTALDI 319
            ++ +    IY  N + +T L +
Sbjct: 190 LLVSQGA-SIYIENKEEKTPLQV 211

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 80  EACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEED 139
           EA   GN +    L+E    V    + + ++    A ++GH ++VKLLI++   +   +D
Sbjct: 10  EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNA-KD 67
Query: 140 SVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
           S   TP++ A   GH +I + ++        K D +G +PLHYA+  G+  + KLL++  
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 200 KDLALQYNKDGYTPLHLAAINGRVKIL 226
            D+    + DG TPL LA  +G  +I+
Sbjct: 127 ADVNTS-DSDGRTPLDLAREHGNEEIV 152

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
           A   G+ D  ++++E        +D +G +PLHYA+  G+  + KLL++   D+  + + 
Sbjct: 11  AAENGNKDRVKDLIENGADVNA-SDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL---AE 265
           DG TPLH AA  G  K +V  L S  A  +   + G T  H A +       K L     
Sbjct: 69  DGRTPLHYAAKEGH-KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 266 SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301
             NT      D  G T L LA    N + V+ + K+
Sbjct: 128 DVNTS-----DSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 140 SVESTPIYL-AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           +VE   + + A+     D+ +++LE       + ++ G++PLH A  +   ++ +LLL H
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 199 NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYN 258
             D  L+  K+G TP  LAAI G VK+L  FLS   A  +    YG T F  A  + K  
Sbjct: 62  GADPVLR-KKNGATPFLLAAIAGSVKLLKLFLSKG-ADVNECDFYGFTAFMEAAVYGKVK 119
Query: 259 AFKFL 263
           A KFL
Sbjct: 120 ALKFL 124

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 140 SVESTPIYL-AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           +VE   + + A+     D+ +++LE       + ++ G++PLH A  +   ++ +LLL H
Sbjct: 22  AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81
Query: 199 NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYN 258
             D  L+  K+G TP  LAAI G VK+L  FLS   A  +    YG T F  A  + K  
Sbjct: 82  GADPVLR-KKNGATPFILAAIAGSVKLLKLFLSKG-ADVNECDFYGFTAFMEAAVYGKVK 139
Query: 259 AFKFL---AESFNTCLFHGQDQ-----FGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRN 310
           A KFL     + N      +DQ      G T L  A  + + + ++ ++ E   D+   +
Sbjct: 140 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 199
Query: 311 HKNQTAL 317
           +  + AL
Sbjct: 200 NMGRNAL 206

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKT-- 172
           A R G  D V++L+     +    D +  TP++LA   GH     EI+EV  ++      
Sbjct: 21  AARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHL----EIVEVLLKYGADVNA 75
Query: 173 -DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
            D  G +PLH A+  G++ + ++LL H  D+  + + +G+TPLHLAA +G ++I+   L 
Sbjct: 76  WDNYGATPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 232 SSPASFDRLTTYGETVFHLAV 252
              A  +    +G+T F +++
Sbjct: 135 YG-ADVNAQDKFGKTAFDISI 154

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           L  +R   D    IL         TD +G +PLH A++ G++ + ++LL H  D+    +
Sbjct: 19  LEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AID 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
             G TPLHLAA+ G ++I+   L    A  + + T+G+T  HLA       A     E  
Sbjct: 78  IXGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLA-------AIMGHLEIV 129
Query: 268 NTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
              L HG     QD+FG T   +++   N    E + K
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           L  +R   D    IL          DK+G++PLH A+  G++ + ++LL    D+  + +
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-D 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
           KDGYTPLHLAA  G ++I+   L +  A  +     G T  HLA R       + L ++ 
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA- 135
Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
                + QD+FG T   +++   N    E +
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G  +  ++L+ +  D+  + +KDGYTPLHLAA  G ++I+   L +  A  +    
Sbjct: 21  AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            G T  HLA R       + L ++      + +D+ G T LHLA    + + VE ++K  
Sbjct: 79  DGYTPLHLAAREGHLEIVEVLLKA--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLK 333
             D+  ++   +TA DI    G  D A  L+
Sbjct: 137 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 80  EACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEED 139
           EA   GN +    L+E    V    + + ++   LA   GH +VVKLL++Q       +D
Sbjct: 10  EAAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA-KD 67
Query: 140 SVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
           S   TP++LA   GH ++ + +L        K D +G +PLH A+  G+  + KLLL+  
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 200 KDLALQYNKDGYTPLHLAAINGRVKIL 226
            D     + DG TPL LA  +G  +++
Sbjct: 127 AD-PNTSDSDGRTPLDLAREHGNEEVV 152

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
           A   G+ D  +++LE        +D +G +PLH A+  G+  + KLLL+   D   + + 
Sbjct: 11  AAENGNKDRVKDLLENGADVNA-SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DS 68
Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL---AE 265
           DG TPLHLAA NG  K +V  L S  A  +   + G+T  HLA         K L     
Sbjct: 69  DGKTPLHLAAENGH-KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 266 SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301
             NT      D  G T L LA    N + V+ + K+
Sbjct: 128 DPNTS-----DSDGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           L  +R   D    IL         TD +G +PLH A++ G++ + ++LL H  D+    +
Sbjct: 19  LEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AID 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
             G TPLHLAA+ G ++I+   L    A  + + T+G+T  HLA       A     E  
Sbjct: 78  IMGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLA-------AIMGHLEIV 129
Query: 268 NTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
              L HG     QD+FG T   +++   N    E + K
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
           TP++LA   GH ++ + +LE       K DKNG +PLH A+  G++ + KLLL    D+ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 204 LQYNKDGYTPLHLAAINGRVKILVAFLSS 232
            + +K+G TPLHLAA NG ++++   L +
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
           NG +PLH A+  G++ + KLLL    D+  + +K+G TPLHLAA NG +++ V  L  + 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEV-VKLLLEAG 58
Query: 235 ASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
           A  +     G T  HLA R       K L E+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 4/207 (1%)
Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA--NP 98
           N  LH A        V E+    P L+  +++    PLH +     HE+++FL+    N 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES-TPIYLAISRGHTDI 157
            +    +    + F +AC  G+L+VVK L ++    +  + + +  T ++LA+ +   ++
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 158 AREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           ++ ++E       K DK    PLH A+S+G++ + +LL    K      +K G+TPL  A
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYG 244
              G     V  +    A +D +   G
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
           P++ A         +E+L  +P    + D++G  PLH++ S     +T  LL+  +++ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 205 QYNKD--GYTPLHLAAINGRVKILVAFLSSSP--ASFDRLTTYGETVFHLAVRFDKYNAF 260
               D  G+TP H+A   G +++ V  L   P     +++T  G T  HLAV    +   
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEV-VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
           +FL E  N      +D+F    LH A    + + +E +
Sbjct: 124 QFLIE--NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
           A   G  D V++L+     +   +D+   TP++LA + G  +I  E+L         +D 
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIV-EVLLKNGADVNASDS 70
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
            G +PLH A+  G++ + ++LL H  D+   Y++ G+TPLHLAA++G+++I+   L    
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQLEIVEVLLKHG- 128
Query: 235 ASFDRLTTYGETVFHLAV 252
           A  +     G T F +++
Sbjct: 129 ADVNAQDALGLTAFDISI 146

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 4/207 (1%)
Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA--NP 98
           N  LH A        V E+    P L+  +++    PLH +     HE+++FL+    N 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES-TPIYLAISRGHTDI 157
            +    +    + F +AC  G+L+VVK L ++    +  + + +  T ++LA+ +   ++
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 158 AREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           ++ ++E       K DK    PLH A+S+G++ + +LL    K      +K G+TPL  A
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYG 244
              G     V  +    A +D +   G
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
           P++ A         +E+L  +P    + D++G  PLH++ S     +T  LL+  +++ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 205 QYNKD--GYTPLHLAAINGRVKILVAFLSSSP--ASFDRLTTYGETVFHLAVRFDKYNAF 260
               D  G+TP H+A   G +++ V  L   P     +++T  G T  HLAV    +   
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEV-VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
           +FL E  N      +D+F    LH A    + + +E +
Sbjct: 124 QFLIE--NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 80  EACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFE 137
           EA   GN +    L+E  A+P  +   + + ++    A   GH ++VKLL+++      +
Sbjct: 10  EAAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 138 EDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN 197
            DS   TP++ A   GH +I + +L        K D +G +PLHYA+  G+  + KLLL+
Sbjct: 67  -DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 198 HNKDLALQYNKDGYTPLHLAAINGRVKIL 226
              D     + DG TPL LA  +G  +I+
Sbjct: 125 KGADPNTS-DSDGRTPLDLAREHGNEEIV 152

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 149 AISRGHTDIAREILE--VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQY 206
           A   G+ D  +++LE    P     +D +G +PLHYA+  G+  + KLLL+   D   + 
Sbjct: 11  AAENGNKDRVKDLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK- 66
Query: 207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL--- 263
           + DG TPLH AA NG  +I V  L S  A  +   + G T  H A         K L   
Sbjct: 67  DSDGRTPLHYAAENGHKEI-VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 264 AESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301
               NT      D  G T L LA    N + V+ + K+
Sbjct: 126 GADPNTS-----DSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 4/207 (1%)
Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA--NP 98
           N  LH A        V E+    P L+  +++    PLH +     HE+++FL+    N 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES-TPIYLAISRGHTDI 157
            +    +    + F +AC  G+L+VVK L ++    +  + + +  T ++LA+ +   ++
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 158 AREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           ++ ++E       K DK    PLH A+S+G++ + +LL    K      +K G+TPL  A
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYG 244
              G     V  +    A +D +   G
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
           P++ A         +E+L  +P    + D++G  PLH++ S     +T  LL+  +++ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 205 QYNKD--GYTPLHLAAINGRVKILVAFLSSSP--ASFDRLTTYGETVFHLAVRFDKYNAF 260
               D  G+TP H+A   G +++ V  L   P     +++T  G T  HLAV    +   
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEV-VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
           +FL E  N      +D+F    LH A    + + +E +
Sbjct: 124 QFLIE--NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
           A R G  D V++L+          D    TP+++A + GH +I  E+L          D 
Sbjct: 9   AARAGQDDEVRILMANGADAN-AYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDT 66
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
           NG +PLH A+S+G++ + ++LL +  D+  + +  G TPL+LAA  G ++I+   L    
Sbjct: 67  NGTTPLHLAASLGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLLKHG- 124
Query: 235 ASFDRLTTYGETVFHLAV 252
           A  +    +G+T F +++
Sbjct: 125 ADVNAQDKFGKTAFDISI 142

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 163 EVRPRFAGKTDKNGF-----SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           EVR   A   D N +     +PLH A+++G++ + ++LL +  D+    + +G TPLHLA
Sbjct: 17  EVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLA 75
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG--- 274
           A  G ++I+   L    A  +     G T  +LA  +      + L       L HG   
Sbjct: 76  ASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVL-------LKHGADV 127
Query: 275 --QDQFGNTVLHLAVLRKNYQFVEYI 298
             QD+FG T   +++   N    E +
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 14/156 (8%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           L  +R   D    IL         TD +G++PLH A+S G++ + ++LL +  D+    +
Sbjct: 19  LEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-D 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
             G TPLHLAA  G ++I+   L    A  +     G T  HLA ++      + L    
Sbjct: 78  LTGITPLHLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIVEVL---- 132
Query: 268 NTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYI 298
              L HG     QD+FG T   +++   N    E +
Sbjct: 133 ---LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G  +  ++L+ +  D+    N DGYTPLHLAA NG ++I+   L +  A  +    
Sbjct: 21  AARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNG-ADVNASDL 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQ-----DQFGNTVLHLAVLRKNYQFVEY 297
            G T  HLA         + L       L HG      D  G+T LHLA    + + VE 
Sbjct: 79  TGITPLHLAAATGHLEIVEVL-------LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 298 IIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLK 333
           ++K    D+  ++   +TA DI    G  D A  L+
Sbjct: 132 LLKHGA-DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 155 TDIAREILE---------VRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNK 200
           +D+ R++LE         VR   A   D N     G +PLH A+  G++ + ++LL H  
Sbjct: 12  SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF 260
           D+    +  GYTPLHLAA  G ++I+   L +  A  + + + G T  HLA ++      
Sbjct: 72  DVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 261 KFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
           + L       L HG     QD+FG T   +++   N    E + K
Sbjct: 130 EVL-------LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 80  EACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEED 139
           EA   GN +    L+E    V    + + ++    A   GH +VVKLLI++   +  + D
Sbjct: 10  EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-D 67
Query: 140 SVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
           S   TP++ A   GH ++ + ++        K D +G +PLH+A+  G+  + KLL++  
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 200 KDLALQYNKDGYTPLHLAAINGRVKIL 226
            D+    + DG TPL LA  +G  +++
Sbjct: 127 ADVNTS-DSDGRTPLDLAREHGNEEVV 152

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
           A   G+ D  ++++E        +D +G +PLH+A+  G+  + KLL++   D+  + + 
Sbjct: 11  AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL---AE 265
           DG TPLH AA NG  K +V  L S  A  +   + G T  H A         K L     
Sbjct: 69  DGRTPLHHAAENGH-KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 266 SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE 301
             NT      D  G T L LA    N + V+ + K+
Sbjct: 128 DVNTS-----DSDGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 74  LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
           L   L EA   G  +    LM AN       +    +   LA   GHL++V++L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILM-ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
           +   +DS+  TP++LA  RGH +I  E+L         +D +GF+PLH A+  G++ + +
Sbjct: 73  VN-AKDSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAING 221
           +LL +  D+  Q +K G T   ++  NG
Sbjct: 131 VLLKNGADVNAQ-DKFGKTAFDISIDNG 157

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
           A R G  D V++L+     +    D    TP++LA   GH +I   +L+       K D 
Sbjct: 21  AARAGQDDEVRILMANGADVN-ARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DS 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
            G +PLH A+  G++ + ++LL +  D+    +  G+TPLHLAA  G ++I+   L +  
Sbjct: 79  LGVTPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNG- 136
Query: 235 ASFDRLTTYGETVFHLAV 252
           A  +    +G+T F +++
Sbjct: 137 ADVNAQDKFGKTAFDISI 154

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           EVR   A   D N     G++PLH A+  G++ + ++LL +  D+  + +  G TPLHLA
Sbjct: 29  EVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQ 277
           A  G ++I+   L +  A  +   ++G T  HLA +       + L +  N    + QD+
Sbjct: 88  ARRGHLEIVEVLLKNG-ADVNASDSHGFTPLHLAAKRGHLEIVEVLLK--NGADVNAQDK 144
Query: 278 FGNTVLHLAVLRKNYQFVEYIIK 300
           FG T   +++   N    E + K
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G  +  ++L+ +  D+  + +  G+TPLHLAA NG ++I+   L +  A  + +  
Sbjct: 21  AARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDH 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            G T   LA  F      + L +  N    +  D  G+T LHLA +  + + VE ++K  
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLK--NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
             D+  ++   +TA DI    G  D A  L+KL
Sbjct: 137 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 38/186 (20%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           L  +R   D    IL          D  G +PLH A+  G++ + ++LL H  D+    +
Sbjct: 19  LEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA-D 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
             G+TPLHLAA+ G ++I+   L            YG  V          NAF       
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLLK-----------YGADV----------NAF------- 109
Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND 327
                   D  G+T LHLA    + + VE ++K    D+  ++   +TA DI    G  D
Sbjct: 110 --------DMTGSTPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISIDNGNED 160
Query: 328 DATSLK 333
            A S +
Sbjct: 161 LAKSCR 166

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 210 GYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNT 269
           G+TPLHLAA  G ++I+   L +  A  +   T G T  HLA  F      + L +  N 
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNG-ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK--NG 103
Query: 270 CLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDA 329
              + +D  G T LHLA  R + + VE ++K    D+  ++   +TA DI    G  D A
Sbjct: 104 ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISINNGNEDLA 162
Query: 330 TSLKKL 335
             L+KL
Sbjct: 163 EILQKL 168

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
           T ++G SPLH A+  G  ++  LLL H  + A   N D   PLHLA   G  +++   L 
Sbjct: 82  TSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN 291
           S+ A  ++    G T    A     +     L +   +   +  +  GNT LH AV+ K+
Sbjct: 141 SN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS--INASNNKGNTALHEAVIEKH 197
Query: 292 YQFVEYIIKETVLDIYCRNHKNQTALDIIEQ 322
              VE ++      +   N + +TA+D  EQ
Sbjct: 198 VFVVELLLLHGA-SVQVLNKRQRTAVDCAEQ 227

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 74  LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
           L   L EA   G  +    LM AN       +   ++   LA  +GHL++V++L+     
Sbjct: 14  LGKKLLEAARAGQDDEVRILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
           +    D +  TP++LA   GH +I  E+L         TD  GF+PLH A+  G++ + +
Sbjct: 73  VN-AADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAING 221
           +LL +  D+  Q +K G T   ++  NG
Sbjct: 131 VLLKYGADVNAQ-DKFGKTAFDISIDNG 157

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G  +  ++L+ +  D+  + +  G TPLHLAAI G ++I+   L    A  +    
Sbjct: 21  AARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHG-ADVNAADK 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            G+T  HLA  +      + L +  N    +  D +G T LHLA    + + VE ++K  
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLLK--NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
             D+  ++   +TA DI    G  D A  L+KL
Sbjct: 137 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           L  +R   D    IL          D++G +PLH A+ +G++ + ++LL +  D+  + N
Sbjct: 19  LEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN 78
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
             G TPLHLAAI G ++I+   L    A  +    +G+T F +++
Sbjct: 79  F-GITPLHLAAIRGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 121

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 38/153 (24%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G  +  ++L+ +  D+    ++DG TPLHLAA  G ++I+   L            
Sbjct: 21  AARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLK----------- 68
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
           YG  V                         + +D FG T LHLA +R + + VE ++K  
Sbjct: 69  YGADV-------------------------NAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
             D+  ++   +TA DI    G  D A  L+KL
Sbjct: 104 A-DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
           A R G  D V++L+     +   +D    TP+YLA + GH +I  E+L          D 
Sbjct: 21  AARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIV-EVLLKNGADVNAVDA 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
            GF+PLH A+ IG++ + ++LL H  D+  Q +K G T   ++  NG
Sbjct: 79  IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNG 124

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           EVR   A   D N     G +PL+ A++ G++ + ++LL +  D+    +  G+TPLHLA
Sbjct: 29  EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
           A  G ++I    L    A  +    +G+T F +++
Sbjct: 88  AFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISI 121

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 178 SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASF 237
           +PLH+A+  G+++M   L+ +  D +L  + +G + +HLAA  G   I VA+L +     
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSI-VAYLIAKGQDV 135
Query: 238 DRLTTYGET-VFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVE 296
           D +   G T +   A R    +  + L  +FN  +  G     NT LH AVL  N   + 
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLL-TFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 297 YIIKETVLDIYCRNHKNQTALDIIEQ 322
            ++ E   ++  +N K ++ALD+ +Q
Sbjct: 195 LLL-EAGANVDAQNIKGESALDLAKQ 219

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDL-ALQYNKDGYTPLHL 216
           EVR   A   D N     G +PLH A+ +G++ + ++LL +  D+ AL ++  G TPLHL
Sbjct: 29  EVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS--GSTPLHL 86
Query: 217 AAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQD 276
           AA  G ++I+   L    A  +   T G T  HLA         + L +       + QD
Sbjct: 87  AAKRGHLEIVEVLLKYG-ADVNADDTIGSTPLHLAADTGHLEIVEVLLKY--GADVNAQD 143
Query: 277 QFGNTVLHLAVLRKNYQFVEYI 298
           +FG T   +++   N    E +
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
           L  +R   D    IL          D+ G +PLH A+   ++ + ++LL H  D+   ++
Sbjct: 19  LEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHD 77
Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
            DG TPLHLAA+ G ++I+   L    A  +    +G+T F +++
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 121

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 168 FAGKTDKNGFSPLHYASSIGNVNMTKLLLN----HNKDLALQYNKDGYTPLHLAAIN--- 220
            A + D++G +PLH A   GN+     L+N      ++L + YN    TPLHLA I    
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLP 59
Query: 221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF--NTCLFHGQDQF 278
             V++LV    +SP + DR   +G+T  HLA         + L +S    T     ++  
Sbjct: 60  SVVRLLVTA-GASPMALDR---HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115
Query: 279 GNTVLHLAVLRKNYQFVEYIIK 300
           G T LH+AV  +  + V+ +++
Sbjct: 116 GLTALHVAVNTECQETVQLLLE 137

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 43  ALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTV 100
           ++H  A  G ++ + E  +    LV   +E+  TPL  A   G  E   FL+E  A+P +
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
             K   E +SA SLA   G+ D+V LL+ +   +    D    TP+  A+   H      
Sbjct: 65  LAK---ERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKCVEA 120
Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           +L        + D +G++P+  A ++G   + +++ NH
Sbjct: 121 LLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENH 157

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 174 KNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS 233
           K+G +PLH A+  G+    K LL+   D+  + +KDG TPLHLAA NG  +I V  L + 
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEI-VKLLLAK 64
Query: 234 PASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
            A  +  +  G T  HLA +   +   K L
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 43  ALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTV 100
           ++H  A  G ++ + E  +    LV   +E+  TPL  A   G  E   FL+E  A+P +
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
             K   E +SA SLA   G+ D+V LL+ +   +    D    TP+  A+   H      
Sbjct: 65  LAK---ERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVHGNHVKCVEA 120
Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           +L        + D +G++P+  A ++G   + +++ NH
Sbjct: 121 LLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENH 157

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 35/234 (14%)
Query: 33  LLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG 85
           LL+R A +N       TALH A    +V++V  + +    +   +NE    PLH A   G
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCG 117
Query: 86  NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTP 145
             +++ +L+     V   +N E  +   +A  +   ++++  +N+  + + E    E   
Sbjct: 118 YLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGV-DIEAARKEEER 175
Query: 146 IYLAISR-----GHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK 200
           I L  +R     GH +  R              K+G + LH A++ G   + KLL+    
Sbjct: 176 IMLRDARQWLNSGHINDVRHA------------KSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 201 DLALQYNKDGYTPLHLAAINGR---VKILVAFLSSSPASFDRLTTYGETVFHLA 251
           D+ ++ + DG+TPLH AA  G+    +ILV  L    A    +   G+T F +A
Sbjct: 224 DVNIK-DYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAFDVA 272

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 91/244 (37%), Gaps = 56/244 (22%)
Query: 81  ACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI----------NQ 130
           AC  G+ E    L+E    +    N +  +A   AC   ++D+VK L+          N+
Sbjct: 47  ACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 131 SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI---- 186
            W+           P++ A S G+ DIA E L  +    G  +  G +PL  A       
Sbjct: 106 GWI-----------PLHAAASCGYLDIA-EYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153
Query: 187 ---GNVNM-------------------TKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
                VN                     +  LN      +++ K G T LH+AA  G  +
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213
Query: 225 ILVAFLSSSPASFD-RLTTY-GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTV 282
           +L   +    A +D  +  Y G T  H A  + K  A + L E  N C     ++ G T 
Sbjct: 214 VLKLLIQ---ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEAVNKVGQTA 268
Query: 283 LHLA 286
             +A
Sbjct: 269 FDVA 272

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
           A R G  D V++L+     +   +D+   TP++LA  RGH +I  E+L         +D 
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIV-EVLLKHGADVNASDS 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
            G +PLH A+++G++ + ++LL +  D+  Q +K G T   ++  NG
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNG 124

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           EVR   A   D N     G +PLH A+  G++ + ++LL H  D+    +  G TPLHLA
Sbjct: 29  EVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
           A  G ++I+   L    A  +    +G+T F +++
Sbjct: 88  ATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISI 121

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 45  HLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTVAT 102
            LAA+   + L T I +    ++   +E+  TPL  A   G   V  FL++  A+P +  
Sbjct: 25  QLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-- 80
Query: 103 KLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL 162
            L    +SA SLAC +G+ D+VK+L++    +  E D    TP+  A+   H    + +L
Sbjct: 81  -LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLL 138
Query: 163 EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           E       +TD +G++ +  A ++G  ++ +++ +H
Sbjct: 139 ESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESH 173

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
           A ++  T   +EIL+       + D  G +PL+ A    ++ + K L++   D+ LQ N 
Sbjct: 12  AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NS 70
Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN 268
              +P   A   GR +IL   L  +    ++   YG      A      +  K L E   
Sbjct: 71  ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130
Query: 269 TCLFHGQDQFGNTVLHLAV-LRKNYQFVEYIIK---ETVLDIYCRNHKNQTALDIIEQAG 324
             +   Q+ FG T L  AV LR+  Q  + I+K   E   D   +++  +TA+D   Q G
Sbjct: 131 EDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 45  HLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTVAT 102
            LAA+   + L T I +    ++   +E+  TPL  A   G   V  FL++  A+P +  
Sbjct: 9   QLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-- 64
Query: 103 KLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL 162
            L    +SA SLAC +G+ D+VK+L++    +  E D    TP+  A+   H    + +L
Sbjct: 65  -LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 163 EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           E       +TD +G++ +  A ++G  ++ +++ +H
Sbjct: 123 ESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESH 157

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 139 DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           D  +STP++LA       I + +L+       K DK G  PLH A S G+  +T+LLL H
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 199 NKDL-ALQYNKDGYTPLHLAAINGRVKILVAFLS 231
              + A+   +  +TPLH AA   RV++    LS
Sbjct: 114 GACVNAMDLWQ--FTPLHEAASKNRVEVCSLLLS 145

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 46  LAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTVATK 103
           LAA+   + L T I +    ++   +E+  TPL  A   G   V  FL++  A+P +   
Sbjct: 8   LAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--- 62
Query: 104 LNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE 163
           L    +SA SLAC +G+ D+VK+L++    +  E D    TP+  A+   H    + +LE
Sbjct: 63  LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
                  +TD +G++ +  A ++G  ++ +++ +H
Sbjct: 122 SGADPTIETD-SGYNSMDLAVALGYRSVQQVIESH 155

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
           A R G  D V++L+     +   +D+   TP++LA  RGH +I  E+L         +D 
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIV-EVLLKHGADVNASDI 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
            G +PLH A+++G++ + ++LL +  D+  Q +K G T   ++  NG
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNG 124

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           EVR   A   D N     G +PLH A+  G++ + ++LL H  D+    +  G TPLHLA
Sbjct: 29  EVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
           A  G ++I+   L    A  +    +G+T F +++
Sbjct: 88  ATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISI 121

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 209 DGYTPLHLAAING-------------RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
           DG+TPL +A+ +G                ++  F+    +  ++    GET  HLA R+ 
Sbjct: 9   DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 256 KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT 315
           + +A K L E+        QD  G T LH AV        + +I+    D+  R H   T
Sbjct: 69  RSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 316 AL 317
            L
Sbjct: 127 PL 128

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 209 DGYTPLHLAAING-------------RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
           DG+TPL +A+ +G                ++  F+    +  ++    GET  HLA R+ 
Sbjct: 10  DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 69
Query: 256 KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT 315
           + +A K L E+        QD  G T LH AV        + +I+    D+  R H   T
Sbjct: 70  RSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 127
Query: 316 AL 317
            L
Sbjct: 128 PL 129

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 82  CCQGNHEVSAFLMEANPTVATKLNHESQSAFS---LACRQGHLDVVKLLINQSWLMEFEE 138
           C +GN       ++        LN      FS    ACR+G   VV++LI +   +    
Sbjct: 13  CREGNAVAVRLWLD---NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69
Query: 139 DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
              + TP++LA S GH DI +++L+ +       +++G  PLHYA   G   + + L+  
Sbjct: 70  RG-DDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV-A 126
Query: 199 NKDLALQYNKDGYTPLHLA 217
           N  L    NK G  P+  A
Sbjct: 127 NGALVSICNKYGEMPVDKA 145

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 60  TKLCPE-LVAAENEKLETPLHEACCQGNHEVSAFLMEA--NPTVATKLNHESQSAFSLAC 116
           T L P   VA + E ++ PLHEA  +GN    ++L E   N      L+    +A   AC
Sbjct: 58  TGLIPSNYVAEQAESIDNPLHEAAKRGNL---SWLRECLDNRVGVNGLDKAGSTALYWAC 114
Query: 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPR 167
             GH D+V+ L  Q  +   +++ +  T ++ A  +G+ DI + +L    R
Sbjct: 115 HGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
           A R G  D V++L+     +   +D+   TP++LA  RGH +I  E+L          D 
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIV-EVLLKHGADVNARDI 78
Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
            G +PLH A+++G++ + ++LL +  D+  Q +K G T   ++  NG
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNG 124

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           EVR   A   D N     G +PLH A+  G++ + ++LL H  D+  + +  G TPLHLA
Sbjct: 29  EVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
           A  G ++I+   L    A  +    +G+T F +++
Sbjct: 88  ATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISI 121

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
Query: 68  AAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
           A  N + +  L EA   G+ E    L          +     +    A     + VV+ L
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 128 INQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG 187
           +     +   +D     P++ A S GH ++A E+L          D   F+PLH A++ G
Sbjct: 62  LQHGADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 188 NVNMTKLLLNHNKDLALQYNKDGYTPLHL 216
              + KLLL H  D   + N+DG TPL L
Sbjct: 120 KYEICKLLLQHGAD-PTKKNRDGNTPLDL 147

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 104 LNHESQSAFS---LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
           LN      FS    ACR+G   VV++LI +   +       + TP++LA S GH DI ++
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG-DDTPLHLAASHGHRDIVQK 85
Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           +L+ +       +++G  PLHYA   G   + + L+  N  L    NK G  P+  A
Sbjct: 86  LLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKA 140

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 71  NEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ 130
           N + +  L EA   G+ E    L          +     +    A     + VV+ L+  
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 131 SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN 190
              +   +D     P++ A S GH ++A E+L          D   F+PLH A++ G   
Sbjct: 67  GADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Query: 191 MTKLLLNHNKDLALQYNKDGYTPLHL 216
           + KLLL H  D   + N+DG TPL L
Sbjct: 125 ICKLLLQHGAD-PTKKNRDGNTPLDL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 3/150 (2%)
Query: 67  VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
           ++  N + +  L EA   G+ E    L          +     +    A     + VV+ 
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI 186
           L+     +   +D     P++ A S GH ++A E+L          D   F+PLH A++ 
Sbjct: 65  LLQHGADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAK 122
Query: 187 GNVNMTKLLLNHNKDLALQYNKDGYTPLHL 216
           G   + KLLL H  D   + N+DG TPL L
Sbjct: 123 GKYEICKLLLQHGAD-PTKKNRDGNTPLDL 151

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G  +  ++L+ +  D+  + +K G TPLHLAA+N  ++I+   L +  A  + +  
Sbjct: 21  AARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNG-ADVNAIDA 78
Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEY 297
            GET  HL   +      + L       L HG     QD+FG T   +++   N    E 
Sbjct: 79  IGETPLHLVAMYGHLEIVEVL-------LKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 298 IIK 300
           + K
Sbjct: 132 LQK 134

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPA 235
           G + LHYA+ + N  + K L+        + ++DG TP+ LAA  GR+++ V +L    A
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEV-VXYLIQQGA 337
Query: 236 SFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTC 270
           S + +     T   LA   + +N    + + F+ C
Sbjct: 338 SVEAVDATDHTARQLAQANNHHN----IVDIFDRC 368

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 163 EVRPRFAGKTDKN-----GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLA 217
           EVR   A   D N     G +PLH A+ +G++ + ++LL +  D+    N  G TPLHLA
Sbjct: 29  EVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLA 87
Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
           A    ++I+   L    A  +    +G+T F +++
Sbjct: 88  AWADHLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 121

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 244 GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV 303
           G  V H A R    +  + L E  N    + +D  GN  LHLA    + + VE+++K T 
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLE--NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 304 LDIYCRNHKNQTALDIIEQAGTND 327
            ++  RNHK  TA D+    G N+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNE 151

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 49/227 (21%)
Query: 16  NDKQALINLV---GCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELV----A 68
           ND QAL  L+   GC     + QR A   TALH+AA + ++E    + +  PELV     
Sbjct: 14  NDVQALSKLLKFEGCE----VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 69  AENEKLETPLHEACCQGNHEVSAFLMEANPTVATK------------LNHESQSAFSLAC 116
           +E  + +T LH A    N  +   L+    +V+ +            L +  +   S A 
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129
Query: 117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG 176
             G  ++V+LLI     +   +DS+ +T +++ I + +   A ++  +   + G      
Sbjct: 130 CVGSEEIVRLLIEHGADIR-AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG----- 183
Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV 223
                               +H K L L  N  G TP  LA + G +
Sbjct: 184 --------------------DHLKSLELVPNNQGLTPFKLAGVEGNI 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	669
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-41
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-36
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-32
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-32
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-30
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-29
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-29
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-26
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-21
2rfa_A	232	Transient receptor potential cation channel subfa	5e-29
2rfa_A	232	Transient receptor potential cation channel subfa	1e-22
2rfa_A	232	Transient receptor potential cation channel subfa	4e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-19
2pnn_A	273	Transient receptor potential cation channel subfa	8e-27
2pnn_A	273	Transient receptor potential cation channel subfa	3e-26
2pnn_A	273	Transient receptor potential cation channel subfa	7e-23
2pnn_A	273	Transient receptor potential cation channel subfa	1e-16
2pnn_A	273	Transient receptor potential cation channel subfa	7e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-25
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-24
2etb_A	256	Transient receptor potential cation channel subfam	2e-23
2etb_A	256	Transient receptor potential cation channel subfam	7e-17
2etb_A	256	Transient receptor potential cation channel subfam	5e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  170 bits (433), Expect = 1e-46
 Identities = 87/314 (27%), Positives = 127/314 (40%), Gaps = 52/314 (16%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLET 76
           ++LL+ +A+ N       T LH+AAR GHVE V                  A   +K  T
Sbjct: 97  KLLLENNANPNLATTAGHTPLHIAAREGHVETV--------LALLEKEASQACMTKKGFT 148

Query: 77  PLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM 134
           PLH A   G   V+  L+E  A+P  A K      +   +A    +LD+VKLL+ +    
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNAAGK---NGLTPLHVAVHHNNLDIVKLLLPRGGSP 205

Query: 135 EFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVN 190
                    TP+++A  +   ++AR +L+      G         G +PLH A+  G+  
Sbjct: 206 H-SPAWNGYTPLHIAAKQNQVEVARSLLQ-----YGGSANAESVQGVTPLHLAAQEGHAE 259

Query: 191 MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHL 250
           M  LLL+   +  L  NK G TPLHL A  G V +    L       D  T  G T  H+
Sbjct: 260 MVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPV-ADVLIKHGVMVDATTRMGYTPLHV 317

Query: 251 AVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLD 305
           A  +      KFL       L H      + + G + LH A  + +   V  ++K     
Sbjct: 318 ASHYGNIKLVKFL-------LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-S 369

Query: 306 IYCRNHKNQTALDI 319
               +    T L I
Sbjct: 370 PNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  167 bits (425), Expect = 1e-45
 Identities = 68/319 (21%), Positives = 121/319 (37%), Gaps = 53/319 (16%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLET 76
             LL+++AS         T LH+AA++G V +         EL         A  +   T
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVA--------ELLLERDAHPNAAGKNGLT 181

Query: 77  PLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM 134
           PLH A    N ++   L+    +P           +   +A +Q  ++V + L+      
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAW---NGYTPLHIAAKQNQVEVARSLLQYGGSA 238

Query: 135 EFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVN 190
              E     TP++LA   GH ++   +L              +K+G +PLH  +  G+V 
Sbjct: 239 N-AESVQGVTPLHLAAQEGHAEMVALLLS-----KQANGNLGNKSGLTPLHLVAQEGHVP 292

Query: 191 MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHL 250
           +  +L+ H   +     + GYTPLH+A+  G +K+ V FL    A  +  T  G +  H 
Sbjct: 293 VADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKL-VKFLLQHQADVNAKTKLGYSPLHQ 350

Query: 251 AVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKET--V 303
           A +    +    L       L +G         G T L +A         + +   T   
Sbjct: 351 AAQQGHTDIVTLL-------LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 403

Query: 304 LDIYCRNHKNQTALDIIEQ 322
             +   +    +  + +++
Sbjct: 404 SFVLVSDKHRMSFPETVDE 422

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  166 bits (422), Expect = 3e-45
 Identities = 78/298 (26%), Positives = 123/298 (41%), Gaps = 41/298 (13%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHE 88
              S  T LH+A+  GH+ +V        +            N K+ETPLH A   G+ E
Sbjct: 10  GGESGLTPLHVASFMGHLPIV--------KNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 89  VSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYL 148
           V+ +L++    V  K   + Q+    A R GH ++VKLL+  +        +   TP+++
Sbjct: 62  VAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHI 119

Query: 149 AISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
           A   GH +    +LE              K GF+PLH A+  G V + +LLL  +     
Sbjct: 120 AAREGHVETVLALLE-----KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174

Query: 205 QYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLA 264
              K+G TPLH+A  +  + I V  L     S       G T  H+A + ++    + L 
Sbjct: 175 A-GKNGLTPLHVAVHHNNLDI-VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL- 231

Query: 265 ESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
                 L +G     +   G T LHLA    + + V  ++ +   +    N    T L
Sbjct: 232 ------LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA-NGNLGNKSGLTPL 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  164 bits (419), Expect = 7e-45
 Identities = 76/310 (24%), Positives = 124/310 (40%), Gaps = 48/310 (15%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLET 76
           + LLQ  A +N       T LH AAR GH  +V        +L                T
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV--------KLLLENNANPNLATTAGHT 115

Query: 77  PLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF 136
           PLH A  +G+ E    L+E   + A     +  +   +A + G + V +LL+ +      
Sbjct: 116 PLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHPN- 173

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMT 192
                  TP+++A+   + DI + +L       G        NG++PLH A+    V + 
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLP-----RGGSPHSPAWNGYTPLHIAAKQNQVEVA 228

Query: 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
           + LL +      + +  G TPLHLAA  G  ++ VA L S  A+ +     G T  HL  
Sbjct: 229 RSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEM-VALLLSKQANGNLGNKSGLTPLHLVA 286

Query: 253 RFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIY 307
           +         L       + HG       + G T LH+A    N + V+++++    D+ 
Sbjct: 287 QEGHVPVADVL-------IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVN 338

Query: 308 CRNHKNQTAL 317
            +     + L
Sbjct: 339 AKTKLGYSPL 348

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (379), Expect = 3e-39
 Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 30/262 (11%)

Query: 69  AENEKLETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
              E   TPLH A   G+  +   L++  A+P V+     + ++   +A R GH +V K 
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV---KVETPLHMAARAGHTEVAKY 65

Query: 127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHY 182
           L+     +   +   + TP++ A   GHT++ + +LE                G +PLH 
Sbjct: 66  LLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLLE-----NNANPNLATTAGHTPLHI 119

Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A+  G+V     LL      A    K G+TPLH+AA  G+V++    L    A  +    
Sbjct: 120 AAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRV-AELLLERDAHPNAAGK 177

Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEY 297
            G T  H+AV  +  +  K L       L  G         G T LH+A  +   +    
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLL-------LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230

Query: 298 IIKETVLDIYCRNHKNQTALDI 319
           +++         + +  T L +
Sbjct: 231 LLQYGG-SANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.7 bits (138), Expect = 1e-08
 Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 52/143 (36%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL------VAAENEKLETP 77
            +L++    ++       T LH+A+ +G+++    + K    L      V A+ +   +P
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIK----LVKF---LLQHQADVNAKTKLGYSP 347

Query: 78  LHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVV----------- 124
           LH+A  QG+ ++   L++  A+P   +    +  +  ++A R G++ V            
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSS---DGTTPLAIAKRLGYISVTDVLKVVTDETS 404

Query: 125 ----------------KLLINQS 131
                             +++ S
Sbjct: 405 FVLVSDKHRMSFPETVDEILDVS 427

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  151 bits (385), Expect = 8e-41
 Identities = 50/297 (16%), Positives = 90/297 (30%), Gaps = 53/297 (17%)

Query: 41  NTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFL 93
              +H+AAR G  + V                    +N    T LH AC  G  + + +L
Sbjct: 21  MEKIHVAARKGQTDEV--------RRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 94  MEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
                  +       Q    LA      D+V  L+  +             P  L     
Sbjct: 73  ASVGEVHSLW---HGQKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECD 122

Query: 154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN--VNMTKLLLNHNKDLALQYNKDGY 211
             ++      V+          G + LH+   +G   + M K+L+        + +K   
Sbjct: 123 EREVNEIGSHVK-------HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK-DKADE 174

Query: 212 TPLHLAAINGR---VKILVAFLSSSP-ASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
           TPL  A        + +++  + S      D     G +  H A+  +  +         
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF---- 230

Query: 268 NTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKE--TVLDIYCRNHKNQTAL 317
              +  G     +D      L+L+V        + ++++    L   C  H   T L
Sbjct: 231 ---VEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  140 bits (356), Expect = 7e-37
 Identities = 40/286 (13%), Positives = 78/286 (27%), Gaps = 53/286 (18%)

Query: 31  RILLQRDASLN-TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN--H 87
             L++           L       E V EI          ++ K +T LH     G    
Sbjct: 101 VALVEGAKERGQMPESLLNECDERE-VNEI------GSHVKHCKGQTALHWCVGLGPEYL 153

Query: 88  EVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF----EEDSV 141
           E+   L++  A+PT   K     ++    A    + + + L+++             +  
Sbjct: 154 EMIKILVQLGASPTAKDK---ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210

Query: 142 ESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLN 197
            ++ ++ AI     D+A   +E      G      D     PL+ +     V +TK LL 
Sbjct: 211 GNSHLHWAILINWEDVAMRFVE-----MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265

Query: 198 HNKDL------------ALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGE 245
                             L         +  AA   + ++ +  L        R    G 
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV-LQLLQEKLDEVVRSLNTGA 324

Query: 246 TVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLA 286
                  +       +         L        + +       ++
Sbjct: 325 GGAVKRKKKAAPAVKRMK-------LAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  138 bits (351), Expect = 3e-36
 Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 57/303 (18%)

Query: 31  RILLQRDASLN-----TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG 85
           + L       +       +HLA      +LV         LV    E+ + P        
Sbjct: 70  KYLASVGEVHSLWHGQKPIHLAVMANKTDLV----VA---LVEGAKERGQMPESLLNECD 122

Query: 86  NHEVSAFLMEANPTVATKLNHESQSAFSLACRQG--HLDVVKLLINQSWLMEFEEDSVES 143
             EV     E    V      + Q+A       G  +L+++K+L+         +D  + 
Sbjct: 123 EREV----NEIGSHVKHC---KGQTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADE 174

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
           TP+  A+   + +    +++  P  +       +K G S LH+A  I   ++    +   
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234

Query: 200 KDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT---YGETVFHLAVRFDK 256
            D+ ++ + +   PL+L+     V +    L      F         G TV         
Sbjct: 235 IDVNME-DNEHTVPLYLSVRAAMVLL-TKELLQKTDVFLIQACPYHNGTTVLP------- 285

Query: 257 YNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTA 316
                                     +  A      + ++ + ++   ++    +     
Sbjct: 286 ------------------DRVVWLDFVPAAADPSKQEVLQLLQEKLD-EVVRSLNTGAGG 326

Query: 317 LDI 319
              
Sbjct: 327 AVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  126 bits (319), Expect = 5e-32
 Identities = 45/259 (17%), Positives = 89/259 (34%), Gaps = 31/259 (11%)

Query: 67  VAAENEKLETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVV 124
               +++    +H A  +G  +    L+E   +PT+  +      +A  LAC+ G +D  
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR---FGCTALHLACKFGCVDTA 69

Query: 125 KLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYAS 184
           K L +   +           PI+LA+    TD+   ++E          + G  P    +
Sbjct: 70  KYLASVGEVHSLWHG---QKPIHLAVMANKTDLVVALVE-------GAKERGQMPESLLN 119

Query: 185 SIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA-FLSSSPASFDRLTTY 243
                 + ++  +         +  G T LH     G   + +   L    AS       
Sbjct: 120 ECDEREVNEIGSHVK-------HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172

Query: 244 GETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYI 298
            ET    A+ F    A   + +               ++ GN+ LH A+L          
Sbjct: 173 DETPLMRAMEFRNREALDLMMD--TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF 230

Query: 299 IKETVLDIYCRNHKNQTAL 317
           ++  + D+   ++++   L
Sbjct: 231 VEMGI-DVNMEDNEHTVPL 248

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  142 bits (362), Expect = 4e-39
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 14/221 (6%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANP 98
           N  LH A        V E+    P L+  +++    PLH +     HE+++FL+    N 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEE-DSVESTPIYLAISRGHTDI 157
            +    +    + F +AC  G+L+VVK L ++    +  +  +   T ++LA+ +   ++
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122

Query: 158 AREIL-----EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYT 212
           + + L      VR       DK    PLH A+S+G++ + +LL    K      +K G+T
Sbjct: 123 S-QFLIENGASVR-----IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

Query: 213 PLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVR 253
           PL  A   G     V  +    A +D +   G     +A+ 
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  114 bits (288), Expect = 5e-29
 Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 47/224 (20%)

Query: 32  ILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLE-- 75
           +L  + + L          LH +  F   E+                  V  ++   +  
Sbjct: 21  LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEIT--------SFLLSKMENVNLDDYPDDSG 72

Query: 76  -TPLHEACCQGNHEVSAFLME----ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI-- 128
            TP H AC  GN EV   L +     +    T    +  +   LA  +   +V + LI  
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN---QGVTCLHLAVGKKWFEVSQFLIEN 129

Query: 129 ----NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYAS 184
                        +D     P++ A S G   +   +  +        DK G++PL +A 
Sbjct: 130 GASVR-------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182

Query: 185 SIGNVNMTKLLL-NHNKDLALQYNKDGYTPLHLAAINGRVKILV 227
           + G+ +   LL+  +  +  L  +  G     +A      K  +
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLV-DNKGAKAEDVALNEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 80.2 bits (199), Expect = 4e-17
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 176 GFSPLHYASSIGNVN-MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
              PLH A        + +LL +    L  + ++DG  PLH +      +I  +FL S  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEI-TSFLLSKM 59

Query: 235 A---SFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN 291
                 D     G T FH+A         K L +       +     G T LHLAV +K 
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119

Query: 292 YQFVEYIIKETVLDIYCRNHKNQTAL 317
           ++  +++I+     +  ++  NQ  L
Sbjct: 120 FEVSQFLIENGA-SVRIKDKFNQIPL 144

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  139 bits (352), Expect = 4e-37
 Identities = 52/281 (18%), Positives = 87/281 (30%), Gaps = 40/281 (14%)

Query: 41  NTALHLAARFGHVELVTEITKL------CPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
           +TALHLA    H   +              E +  +N+  +T LH A   G       L 
Sbjct: 10  DTALHLAVIHQHEPFL----DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 95  E--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ----------SWLMEFEEDSVE 142
              A   VA +      +A  LACR        +L+            ++L + ++ + +
Sbjct: 66  AAGAGVLVAER---GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 143 S--TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK 200
           +   P  +       +      E         + +G +PLH A    +  M +LL +   
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF 260
           DL       G TPLHLA       + +  L  + A        G T    A+        
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASV-LELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241

Query: 261 KFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVE 296
           + L         HG           +    +    +    +
Sbjct: 242 RLL-------RAHGAPEPEDGGDKLSPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  104 bits (262), Expect = 5e-25
 Identities = 38/228 (16%), Positives = 66/228 (28%), Gaps = 37/228 (16%)

Query: 114 LACRQGHLDVVKLLINQ--SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG- 170
           LA    H   +  L+           ++ +  T ++LA   G      ++       AG 
Sbjct: 15  LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-----AGA 69

Query: 171 ---KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN------------KDGYTPLH 215
                ++ G + LH A  +       +LL          +               + P  
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 216 LAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQ 275
           + +                   +     G T  H+AV        + L +        G 
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-------AGA 182

Query: 276 D------QFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
           D        G T LHLAV  +    +E ++K    D   R +  +T L
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMYGGRTPL 229

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 90.7 bits (226), Expect = 2e-20
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 16/170 (9%)

Query: 144 TPIYLAISRGHTDIAREILE--VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKD 201
           T ++LA+   H      +L       +    +  G + LH A+ +G  +  + L      
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
           + +   + G+T LHLA            L     S  R  +            D  +A  
Sbjct: 71  VLVA-ERGGHTALHLACRVRAHTC-ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 262 FLAESFNTC-------LFHG-----QDQFGNTVLHLAVLRKNYQFVEYII 299
            +    N                  ++  G+T LH+AV+ K+ + V  + 
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.7 bits (208), Expect = 6e-18
 Identities = 36/161 (22%), Positives = 53/161 (32%), Gaps = 14/161 (8%)

Query: 170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL--QYNKDGYTPLHLAAINGRVKILV 227
           G   ++G + LH A    +      LL  +         N  G T LHLAAI G     V
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST-V 61

Query: 228 AFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL--------AESFNTCLFHGQD--- 276
             L ++ A        G T  HLA R   +     L         ++ +T L   QD   
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 277 QFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
              +    +          E   ++  L +   N+   T L
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 10/164 (6%)

Query: 39  SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANP 98
           + +    + ++           +     + AEN    TPLH A    + E+   L +A  
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIA 158
            +        ++   LA       V++LL+               TP+  A+ R +  +A
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPNPILA 241

Query: 159 REILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           R +        G    +   +  SP   + S  + +       +
Sbjct: 242 RLLRA-----HGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  138 bits (351), Expect = 6e-37
 Identities = 58/281 (20%), Positives = 98/281 (34%), Gaps = 33/281 (11%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
           N  L  A +   V+LV ++ +    +   E E   TPLH A      ++   L+      
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFEEDSVESTPIYLAISRGH 154
             +      + F LA   G + ++KL +      N       E D    T    A   G 
Sbjct: 66  VLR-KKNGATPFLLAAIAGSVKLLKLFLSKGADVN-------ECDFYGFTAFMEAAVYGK 117

Query: 155 TDIAREILEV---------RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH---NKDL 202
               + + +                +  K G + L  A+  G+V + K+LL+    + + 
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177

Query: 203 ALQYNKDGYTPLHLAAINGR---VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNA 259
               +  G   L  A ++     V+ +   L    A  +     G+T   LAV       
Sbjct: 178 C---DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234

Query: 260 FKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
            + L E  +  + +  D  G T L LAV  K  +  E + K
Sbjct: 235 VQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  136 bits (346), Expect = 3e-36
 Identities = 54/269 (20%), Positives = 94/269 (34%), Gaps = 39/269 (14%)

Query: 75  ETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI------ 128
              L +A    + ++   L+E    V  +      +    A +    D+V+LL+      
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 129 NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYAS 184
                         +TP  LA   G   + +  L       G    + D  GF+    A+
Sbjct: 66  V-------LRKKNGATPFLLAAIAGSVKLLKLFLS-----KGADVNECDFYGFTAFMEAA 113

Query: 185 SIGNVNMTKLLLNH---------NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPA 235
             G V   K L             K+   +  K G T L  AA  G V++L   L    A
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 236 SFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRK 290
             +     G      A+     +  + +       L HG     + + G T L LAV +K
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLL---LDHGADVNVRGERGKTPLILAVEKK 230

Query: 291 NYQFVEYIIKETVLDIYCRNHKNQTALDI 319
           +   V+ ++++  ++I   +   +TAL +
Sbjct: 231 HLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (314), Expect = 6e-32
 Identities = 52/265 (19%), Positives = 95/265 (35%), Gaps = 46/265 (17%)

Query: 31  RILLQRDASLN--------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLE 75
           + LL+  A++N        T LH A +    ++V        EL            +   
Sbjct: 22  QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV--------ELLLRHGADPVLRKKNGA 73

Query: 76  TPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI----- 128
           TP   A   G+ ++    +   A+            +AF  A   G +  +K L      
Sbjct: 74  TPFLLAAIAGSVKLLKLFLSKGADVNECDF---YGFTAFMEAAVYGKVKALKFLYKRGAN 130

Query: 129 ----NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG--KTDKNGFSPLHY 182
                ++   +       +T +  A  +GH ++  +IL +    A     D  G + L +
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL-KIL-LDEMGADVNACDNMGRNALIH 188

Query: 183 ASSIGNVN----MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFD 238
           A    + +    +T LLL+H  D+ ++  + G TPL LA     + ++   L       +
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247

Query: 239 RLTTYGETVFHLAVRFDKYNAFKFL 263
              + G+T   LAV        + L
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  112 bits (282), Expect = 1e-27
 Identities = 55/238 (23%), Positives = 86/238 (36%), Gaps = 41/238 (17%)

Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
             E       A +   +D+V+ L+     + F+E+    TP++ A+     DI   +L  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR- 60

Query: 165 RPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN 220
                G       KNG +P   A+  G+V + KL L+   D+    +  G+T    AA+ 
Sbjct: 61  ----HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVY 115

Query: 221 GRVKILVAFLSS----------SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTC 270
           G+VK  + FL            +    +RL   G T    A         K L       
Sbjct: 116 GKVKA-LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL------- 167

Query: 271 LFHG------QDQFGNTVLHLAVLRKNYQFVEYIIKETVL-----DIYCRNHKNQTAL 317
           L          D  G   L  A+L  +   VE I    +L     D+  R  + +T L
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH--LLLDHGADVNVRGERGKTPL 223

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 88.7 bits (221), Expect = 1e-19
 Identities = 36/195 (18%), Positives = 69/195 (35%), Gaps = 35/195 (17%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVT---------EITKLCPELVAAENEKL 74
           ++ L + A +N       TA   AA +G V+ +           + +   E      +  
Sbjct: 89  KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 75  ETPLHEACCQGNHEVSAFLME---ANPTVATKLNHESQSAFSLACRQGH----LDVVKLL 127
            T L +A  +G+ EV   L++   A+           ++A   A           +  LL
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDN---MGRNALIHALLSSDDSDVEAITHLL 205

Query: 128 INQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYA 183
           ++    +         TP+ LA+ + H  + + +LE            TD +G + L  A
Sbjct: 206 LDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTALLLA 260

Query: 184 SSIGNVNMTKLLLNH 198
             +    + +LL   
Sbjct: 261 VELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 75.2 bits (186), Expect = 5e-15
 Identities = 35/208 (16%), Positives = 53/208 (25%), Gaps = 80/208 (38%)

Query: 29  NKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVA---AENEKLETPLHEACCQG 85
            K    +      TAL  AA  GHVE V +I  L  E+ A   A +      L  A    
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVE-VLKI--LLDEMGADVNACDNMGRNALIHALLSS 193

Query: 86  NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTP 145
           +                                    +  LL                  
Sbjct: 194 DDS------------------------------DVEAITHLL------------------ 205

Query: 146 IYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH---NKDL 202
               +  G  D+                + G +PL  A    ++ + + LL       + 
Sbjct: 206 ----LDHG-ADV------------NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 203 ALQYNKDGYTPLHLAAINGR---VKILV 227
               + DG T L LA         ++L 
Sbjct: 249 T---DSDGKTALLLAVELKLKKIAELLC 273

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  137 bits (347), Expect = 2e-36
 Identities = 46/229 (20%), Positives = 72/229 (31%), Gaps = 42/229 (18%)

Query: 42  TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFLM 94
           + +H AA  GH   +                 V        +PLHEAC  G+      L+
Sbjct: 61  SPMHEAAIHGHQLSL--------RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 95  E--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISR 152
           +  A     T    +  +    AC  G  D V LL+        + +S  ++PI+ A  R
Sbjct: 113 KHGAQVNGVTA---DWHTPLFNACVSGSWDCVNLLLQHG--ASVQPESDLASPIHEAARR 167

Query: 153 GHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH----NKDLAL 204
           GH +    ++       G        +  +PL+ A         K LL      N+    
Sbjct: 168 GHVECVNSLIA-----YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG--- 219

Query: 205 QYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVR 253
              K   +PLH        ++    L    A        G+    L   
Sbjct: 220 ---KGQDSPLHAVVRTASEEL-ACLLMDFGADTQAKNAEGKRPVELVPP 264

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  134 bits (339), Expect = 3e-35
 Identities = 52/293 (17%), Positives = 97/293 (33%), Gaps = 50/293 (17%)

Query: 31  RILLQRDASLN------------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPL 78
             L+ R + +                      G   L           +  +     +P+
Sbjct: 12  SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLS--------NPLMGDAVSDWSPM 63

Query: 79  HEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF 136
           HEA   G+      L+       + T    +  S    AC  GHL  VK+L+     +  
Sbjct: 64  HEAAIHGHQLSLRNLISQGWAVNIITA---DHVSPLHEACLGGHLSCVKILLKHGAQVN- 119

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAG---KTDKNGFSPLHYASSIGNVNMTK 193
              +   TP++ A   G  D    +L+      G   + + +  SP+H A+  G+V    
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQ-----HGASVQPESDLASPIHEAARRGHVECVN 174

Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVR 253
            L+ +  ++  +      TPL+LA  N +    V  L  S A  ++     ++  H  VR
Sbjct: 175 SLIAYGGNIDHK-ISHLGTPLYLACENQQRAC-VKKLLESGADVNQ-GKGQDSPLHAVVR 231

Query: 254 FDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKE 301
                    L       +  G     ++  G   + L    ++     ++ +E
Sbjct: 232 TASEELACLL-------MDFGADTQAKNAEGKRPVELVP-PESPLAQLFLERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (332), Expect = 3e-34
 Identities = 52/297 (17%), Positives = 98/297 (32%), Gaps = 59/297 (19%)

Query: 46  LAARFGHVELVTEITKLCPELV---AAENEK--------LETPLHEACCQGNHEVSAFLM 94
           + +   H             LV   +                P       G        +
Sbjct: 1   MGSSHHHHHHS----SG---LVPRGSHMASMDGKQGGMDGSKPAGPRDFPG------IRL 47

Query: 95  EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
            +NP +   ++    S    A   GH   ++ LI+Q W +     +   +P++ A   GH
Sbjct: 48  LSNPLMGDAVSD--WSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGH 104

Query: 155 TDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH----NKDLALQY 206
               + +L+      G        +  +PL  A   G+ +   LLL H      +     
Sbjct: 105 LSCVKILLK-----HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE----- 154

Query: 207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
             D  +P+H AA  G V+  V  L +   + D   ++  T  +LA    +    K L   
Sbjct: 155 -SDLASPIHEAARRGHVEC-VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL--- 209

Query: 267 FNTCLFHG----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
               L  G    Q +  ++ LH  V   + +    ++     D   +N + +  +++
Sbjct: 210 ----LESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA-DTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  127 bits (322), Expect = 4e-33
 Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 40/228 (17%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLET 76
           R L+ +  ++N       + LH A   GH+  V        ++       V        T
Sbjct: 76  RNLISQGWAVNIITADHVSPLHEACLGGHLSCV--------KILLKHGAQVNGVTADWHT 127

Query: 77  PLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM 134
           PL  AC  G+ +    L++  A+    + L     S    A R+GH++ V  LI     +
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASVQPESDL----ASPIHEAARRGHVECVNSLIAYGGNI 183

Query: 135 EFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG---KTDKNGFSPLHYASSIGNVNM 191
           +  + S   TP+YLA         +++LE     +G      K   SPLH      +  +
Sbjct: 184 D-HKISHLGTPLYLACENQQRACVKKLLE-----SGADVNQGKGQDSPLHAVVRTASEEL 237

Query: 192 TKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDR 239
             LL++   D   + N +G  P+ L      +  L  FL    AS  +
Sbjct: 238 ACLLMDFGADTQAK-NAEGKRPVELVPPESPLAQL--FLEREGASLPK 282

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  135 bits (343), Expect = 2e-36
 Identities = 54/240 (22%), Positives = 89/240 (37%), Gaps = 25/240 (10%)

Query: 35  QRDASLNTALHLAARFGHVELVTEITKLCPELVA------AENEKLETPLHEACCQGNHE 88
             D      +  A ++G  E      +    LV         +++  T LH A      +
Sbjct: 4   HIDDYSTWDIVKATQYGIYERC----RE---LVEAGYDVRQPDKENVTLLHWAAINNRID 56

Query: 89  VSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYL 148
           +  + +     V       + +    A RQGHL +V  L+          D    + I+L
Sbjct: 57  LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHL 115

Query: 149 AISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGN-VNMTKLLLNHNKDLA 203
           A   GHT I   ++       G      D+NG +PL +A+   + V+ T+LLL  N  + 
Sbjct: 116 AAQFGHTSIVAYLIAK-----GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170

Query: 204 LQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
           L       T LH A + G   + ++ L  + A+ D     GE+   LA +         L
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTV-ISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (321), Expect = 2e-33
 Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 28/246 (11%)

Query: 67  VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
           +   ++     + +A   G +E    L+EA   V    + E+ +    A     +D+VK 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKY 60

Query: 127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHY 182
            I++  +++     + STP++ A  +GH  +  ++++      G      D  G S +H 
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK-----YGADPSLIDGEGCSCIHL 115

Query: 183 ASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRL 240
           A+  G+ ++   L+    + D+    +++G TPL  AA           L +   S +  
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMM---DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172

Query: 241 TTY-GETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQF 294
             Y   T  H AV          L       L  G     Q+  G + L LA  RKN   
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLL-------LEAGANVDAQNIKGESALDLAKQRKNVWM 225

Query: 295 VEYIIK 300
           + ++ +
Sbjct: 226 INHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 96.0 bits (240), Expect = 2e-22
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 38/193 (19%)

Query: 31  RILLQRDASLN--------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLE 75
           +  + + A ++        T LH A R GH+ +V                  +  + +  
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV--------VQLMKYGADPSLIDGEGC 110

Query: 76  TPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGH-LDVVKLLINQSW 132
           + +H A   G+  + A+L+    +  +  +      +    A  + H +D  +LL+  + 
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ---NGMTPLMWAAYRTHSVDPTRLLLTFNV 167

Query: 133 LMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGN 188
            +   +   ++T ++ A+  G+T +   +LE     AG      +  G S L  A    N
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLE-----AGANVDAQNIKGESALDLAKQRKN 222

Query: 189 VNMTKLLLNHNKD 201
           V M   L    + 
Sbjct: 223 VWMINHLQEARQA 235

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  136 bits (346), Expect = 1e-35
 Identities = 61/335 (18%), Positives = 106/335 (31%), Gaps = 69/335 (20%)

Query: 16  NDKQALINLVGCSNK----RILLQRDASLN-------TALHLAARFGHVELVTEITKLCP 64
             K  L+      N+     +L   + + +       T LHLAA +  V +V        
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIV-------- 74

Query: 65  EL-------VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR 117
           +L       V A+++    PLH AC  G++EV+  L++    V    +    +    A  
Sbjct: 75  QLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAAS 133

Query: 118 QGHLDVVKLLI------NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGK 171
           +  ++V  LL+                +    + + +A +    +               
Sbjct: 134 KNRVEVCSLLLSHGADPT-------LVNCHGKSAVDMAPTPELRERL------------T 174

Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL--VAF 229
            +  G S L  A    ++   K  L        Q  +   T LH A  +   K       
Sbjct: 175 YEFKGHSLLQAARE-ADLAKVKKTLALEIINFKQ-PQSHETALHCAVASLHPKRKQVAEL 232

Query: 230 LSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLH 284
           L    A+ +       T  H+A      +  + L         HG      D  G T LH
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL-------HKHGAKMNALDSLGQTALH 285

Query: 285 LAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
            A L  + Q    ++     D    + +  TA  +
Sbjct: 286 RAALAGHLQTCRLLLSYGS-DPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  132 bits (335), Expect = 4e-34
 Identities = 63/316 (19%), Positives = 101/316 (31%), Gaps = 75/316 (23%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNH-EVSAFLMEANPT 99
            +AL LA                        E  +  L EA   GN  ++ A L   N  
Sbjct: 5   KSALDLADPSAKAV--------------LTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50

Query: 100 VATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFEEDSVESTPIYLAISRG 153
                +    +   LA     + +V+LL+      +        +D     P++ A S G
Sbjct: 51  CHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-------AKDKGGLVPLHNACSYG 102

Query: 154 HTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD 209
           H ++   +L+      G      D   F+PLH A+S   V +  LLL+H  D  L  N  
Sbjct: 103 HYEVTELLLK-----HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCH 156

Query: 210 GYTPLHLAAINGR---VKIL-----------------VAFLSSSPASFDRLTTYGETVFH 249
           G + + +A        +                    V    +      +     ET  H
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH 216

Query: 250 LAVRFDKYNAF---KFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKE 301
            AV           + L       L  G     +++   T LH+A  R +   +E + K 
Sbjct: 217 CAVASLHPKRKQVAELL-------LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269

Query: 302 TVLDIYCRNHKNQTAL 317
               +   +   QTAL
Sbjct: 270 GA-KMNALDSLGQTAL 284

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  129 bits (327), Expect = 4e-33
 Identities = 61/298 (20%), Positives = 111/298 (37%), Gaps = 68/298 (22%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVA------AENEKLETP 77
           ++LLQ  A ++         LH A  +GH E    +T+L   L+       A +    TP
Sbjct: 75  QLLLQHGADVHAKDKGGLVPLHNACSYGHYE----VTEL---LLKHGACVNAMDLWQFTP 127

Query: 78  LHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
           LHEA  +   EV + L+   A+PT+        +SA  +A      + +        L++
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNC---HGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

Query: 136 --------------------FEEDSVESTPIYLAISRGH---TDIAREILEVRPRFAG-- 170
                               F++     T ++ A++  H     +A  +L       G  
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR-----KGAN 239

Query: 171 --KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA 228
             + +K+  +PLH A+   + ++ ++L  H   +    +  G T LH AA+ G ++    
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQT-CR 297

Query: 229 FLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLA 286
            L S  +    ++  G T   +          + L+ES         D   +  L  A
Sbjct: 298 LLLSYGSDPSIISLQGFTAAQMGNE----AVQQILSESTP---MRTSD--VDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 97.2 bits (243), Expect = 5e-22
 Identities = 43/227 (18%), Positives = 69/227 (30%), Gaps = 53/227 (23%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLE-------- 75
            +LL   A          +A+ +A      E +T   K    L AA    L         
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200

Query: 76  ------------TPLHEACCQG---NHEVSAFLME--ANPTVATKLNHESQSAFSLACRQ 118
                       T LH A         +V+  L+   AN     K   +  +   +A  +
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK---DFMTPLHVAAER 257

Query: 119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDK 174
            H DV+++L      M    DS+  T ++ A   GH    R +L       G        
Sbjct: 258 AHNDVMEVLHKHGAKMN-ALDSLGQTALHRAALAGHLQTCRLLLS-----YGSDPSIISL 311

Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
            GF+     +        + +L+ +         D    L  A+  G
Sbjct: 312 QGFTAAQMGNEAV-----QQILSES---TPMRTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.1 bits (178), Expect = 1e-13
 Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 36/203 (17%)

Query: 6   AQNLSEAIVR--NDKQALINLVGCSNKRI---LLQRDASLN-------TALHLAARFGHV 53
                   +       +L+     ++       L  +           TALH A    H 
Sbjct: 165 PTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHP 224

Query: 54  ELVTEITKLCPELVA------AENEKLETPLHEACCQGNHEVSAFLME--ANPTVATKLN 105
           +   ++ +L   L+        +N+   TPLH A  + +++V   L +  A       L 
Sbjct: 225 KRK-QVAEL---LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLG 280

Query: 106 HESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR 165
              Q+A   A   GHL   +LL++              T   +       +  ++IL   
Sbjct: 281 ---QTALHRAALAGHLQTCRLLLSYGSDPS-IISLQGFTAAQMG-----NEAVQQILSES 331

Query: 166 PRFAGKTDKNGFSPLHYASSIGN 188
                  D +    L  AS  G+
Sbjct: 332 TPMRTS-DVDY--RLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.9 bits (167), Expect = 2e-12
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 27/149 (18%)

Query: 174 KNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS 233
           + G S L  A       +T               +     L  AA +G  + L+A L+  
Sbjct: 2   EFGKSALDLADPSAKAVLT--------------GEYKKDELLEAARSGNEEKLMALLTPL 47

Query: 234 PASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVL 288
             +         T  HLA  +++    + L       L HG     +D+ G   LH A  
Sbjct: 48  NVNCHASDGRKSTPLHLAAGYNRVRIVQLL-------LQHGADVHAKDKGGLVPLHNACS 100

Query: 289 RKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
             +Y+  E ++K     +   +    T L
Sbjct: 101 YGHYEVTELLLKHGA-CVNAMDLWQFTPL 128

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  133 bits (337), Expect = 1e-35
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 27/234 (11%)

Query: 41  NTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFL 93
            + LH AA  GHV++          +       +   +E   TPL EA    + E   +L
Sbjct: 12  RSPLHAAAEAGHVDIC--------HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 94  MEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
           ++A   V  K + E  +   LA ++GH +VV+ L++   +    +D    TP+  A    
Sbjct: 64  IKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122

Query: 154 HTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD 209
           H D+ + +L       G      D      LH+A+  G V++ ++LL    DL    N  
Sbjct: 123 HVDLVKLLLSK-----GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV-NIH 176

Query: 210 GYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
           G +PLH+AA   R    V    S  +        GET    A    +  +   +
Sbjct: 177 GDSPLHIAARENRYDC-VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  130 bits (331), Expect = 9e-35
 Identities = 54/239 (22%), Positives = 108/239 (45%), Gaps = 20/239 (8%)

Query: 69  AENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI 128
            E++   +PLH A   G+ ++   L++A   + T  + + ++    A    HL+ VK LI
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLI 64

Query: 129 NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN 188
               L++  +D+  ST ++LA  +GH ++ + +L          D  G++P+ +A+   +
Sbjct: 65  KAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123

Query: 189 VNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGET 246
           V++ KLLL+   + ++    + +    LH AA +G V I    L ++      +  +G++
Sbjct: 124 VDLVKLLLSKGSDINIR---DNEENICLHWAAFSGCVDI-AEILLAAKCDLHAVNIHGDS 179

Query: 247 VFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
             H+A R ++Y+            L        +++ G T L  A L         + K
Sbjct: 180 PLHIAARENRYDCVVLF-------LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  123 bits (311), Expect = 5e-32
 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 33/213 (15%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLET 76
            +L+Q  A+++       T L  AA   H+E V        +        V  ++ +  T
Sbjct: 28  HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV--------KYLIKAGALVDPKDAEGST 79

Query: 77  PLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF 136
            LH A  +G++EV  +L+          +    +    A    H+D+VKLL+++   +  
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN- 138

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMT 192
             D+ E+  ++ A   G  DIA  +L      A       + +G SPLH A+     +  
Sbjct: 139 IRDNEENICLHWAAFSGCVDIAEILLA-----AKCDLHAVNIHGDSPLHIAARENRYDCV 193

Query: 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKI 225
            L L+ + D+ L+ NK+G TPL  A++N +V  
Sbjct: 194 VLFLSRDSDVTLK-NKEGETPLQCASLNSQVWS 225

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 97.1 bits (243), Expect = 7e-23
 Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 36/193 (18%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVA-------AENEKLET 76
           + L++  A ++       T LHLAA+ GH E    + +    L++        +++   T
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYE----VVQY---LLSNGQMDVNCQDDGGWT 113

Query: 77  PLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM 134
           P+  A    + ++   L+   ++  +      E       A   G +D+ ++L+     +
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDN---EENICLHWAAFSGCVDIAEILLAAKCDL 170

Query: 135 EFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVN 190
               +    +P+++A      D     L              +K G +PL  AS    V 
Sbjct: 171 H-AVNIHGDSPLHIAARENRYDCVVLFLSR-----DSDVTLKNKEGETPLQCASLNSQVW 224

Query: 191 MTKLLLNHNKDLA 203
               +    +D A
Sbjct: 225 SALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 88.6 bits (221), Expect = 5e-20
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVA 228
              +N  SPLH A+  G+V++  +L+    N D     ++D  TPL  AA N  ++  V 
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEA-VK 61

Query: 229 FLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG------QDQFGNTV 282
           +L  + A  D     G T  HLA +   Y   ++L       L +G      QD  G T 
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL-------LSNGQMDVNCQDDGGWTP 114

Query: 283 LHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
           +  A   K+   V+ ++ +   DI  R+++    L
Sbjct: 115 MIWATEYKHVDLVKLLLSKGS-DINIRDNEENICL 148

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  133 bits (337), Expect = 2e-35
 Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 23/236 (9%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVA---AENEKLETPLHEACCQGNHEVSAFLME-- 95
           +T LH+A   G++  V  +  L  +        N   +TPLH A       V   L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 96  ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF---EEDSVESTPIYLAISR 152
           A+P    +     Q+A  LAC       ++ L++ +          +    T +++A++ 
Sbjct: 70  ASPMALDR---HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126

Query: 153 GHTDIAREILEVRPRFAG-----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
              +  + +LE      G        K+G SPL +A    +++M +LLL H  ++  Q  
Sbjct: 127 ECQETVQLLLE-----RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-M 180

Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
             G + LH A+  G + + V  L  S A       + +T   +A      +  +  
Sbjct: 181 YSGSSALHSASGRGLLPL-VRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 95.6 bits (239), Expect = 3e-22
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 28/186 (15%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKL-------CPELVAAENEKLET 76
           R+L+   AS         TA HLA             +            + A N    T
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPT----CLRALLDSAAPGTLDLEARNYDGLT 118

Query: 77  PLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF 136
            LH A      E    L+E    +        +S    A     L +V+LL+     +  
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN- 177

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMT 192
            +    S+ ++ A  RG   + R ++      +G      + +  +PL  A S   +++ 
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTLVR-----SGADSSLKNCHNDTPLMVARSRRVIDIL 232

Query: 193 KLLLNH 198
           +     
Sbjct: 233 RGKATR 238

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  132 bits (334), Expect = 5e-35
 Identities = 52/271 (19%), Positives = 91/271 (33%), Gaps = 36/271 (13%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
           R     T L +A+  G                           +    +    V +  + 
Sbjct: 6   RGPDGFTPLMIASCSGG---------------------GLETGNSEEEEDAPAVISDFIY 44

Query: 96  ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT 155
              ++  + +   ++A  LA R    D  K L+  S      +D++  TP++ A+S    
Sbjct: 45  QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQ 103

Query: 156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLH 215
            + + ++  R         +G +PL  A+ +    M + L+N + D+    +  G + LH
Sbjct: 104 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALH 162

Query: 216 LAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG- 274
            AA    V      L  + A+ D      ET   LA R   Y   K L       L H  
Sbjct: 163 WAAAVNNVDA-AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL-------LDHFA 214

Query: 275 ----QDQFGNTVLHLAVLRKNYQFVEYIIKE 301
                D        +A  R ++  V  +  E
Sbjct: 215 NRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.9 bits (219), Expect = 1e-19
 Identities = 37/166 (22%), Positives = 55/166 (33%), Gaps = 28/166 (16%)

Query: 171 KTDKNGFSPLHYASSIGNVN-------------MTKLLLNHNKDLALQYNKDGYTPLHLA 217
               +GF+PL  AS  G                +    +     L  Q ++ G T LHLA
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 218 AINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG--- 274
           A   R       L  + A  +     G T  H AV  D    F+ L       + +    
Sbjct: 65  ARYSRSDA-AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL-------IRNRATD 116

Query: 275 ---QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
              +   G T L LA        +E +I     D+   +   ++AL
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHA-DVNAVDDLGKSAL 161

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  135 bits (342), Expect = 5e-35
 Identities = 50/304 (16%), Positives = 94/304 (30%), Gaps = 39/304 (12%)

Query: 35  QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKL---ETPLHEACCQGNHEVSA 91
           Q   S   +L  A+  G+++                NE       P  +    GN  +  
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQ-------------RNELQHYSLYPNPQGYGNGNDFLGD 78

Query: 92  FLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAIS 151
           F              ES          G   + + +  +S  +   +     T ++   S
Sbjct: 79  FNHTNLQIPTEP-EPESPIKLHTEA-AGSYAITEPITRES--VNIIDPRHNRTVLHWIAS 134

Query: 152 RGHTDIAREILEVRPRFAG-------KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
               + + +++    +            D +  +PL  A       +   L+    D  +
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194

Query: 205 QYNKDGYTPLHLAAINGRVKILVAFLSSSP--ASFDRLTTYGETVFHLAVRF---DKYNA 259
             NK   + LH AA N    ++V  L+S+      + L   G T   +       D+  +
Sbjct: 195 Y-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

Query: 260 FKFLAE------SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKN 313
            K L E               +   G T LH A    N   V+Y++ E   +   ++   
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 313

Query: 314 QTAL 317
           +T +
Sbjct: 314 KTPI 317

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  132 bits (334), Expect = 8e-34
 Identities = 50/336 (14%), Positives = 96/336 (28%), Gaps = 54/336 (16%)

Query: 6   AQNLSEAIVRNDKQ-----ALINLVGCSNKRI---LLQRDASLN-------TALHLAARF 50
           + +      RN+ Q           G  N  +                     LH  A  
Sbjct: 45  SYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA- 103

Query: 51  GHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKL------ 104
           G   +   IT+    ++   + +  T LH      + E S  L+                
Sbjct: 104 GSYAITEPITRESVNIIDPRHNR--TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

Query: 105 -NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE 163
            + +  +   LA       +V  L+          +  E + ++ A +     +    + 
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMM-VYM- 218

Query: 164 VRPRFAG----KTDKNGFSPLHYASSIGN---VNMTKLLLNH-------NKDLALQYNKD 209
           +          + D+NG + L   +       V   KLL+                    
Sbjct: 219 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278

Query: 210 GYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNT 269
           G T LH AA    + I+   +    ++ D+    G+T   LA +  +     +L      
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL------ 332

Query: 270 CLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
            +  G      D   +T   LA    ++  V+   +
Sbjct: 333 -IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 87.7 bits (218), Expect = 8e-19
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 40/199 (20%)

Query: 32  ILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL----------VAAENEKL 74
            L++  A          +ALH AA      ++                    +   +   
Sbjct: 184 YLMKAGADPTIYNKSERSALHQAAANRDFGMM--------VYMLNSTKLKGDIEELDRNG 235

Query: 75  ETPLHEACCQGNHEVSA---FLME--ANPTVATKLNHES-----QSAFSLACRQGHLDVV 124
            T L         +  A    L+E  A          +S     ++A   A +  ++ +V
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 125 KLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGK--TDKNGFSPLHY 182
           K L+ +    + ++D    TPI LA   G  ++   +++     A     D    +    
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQL 352

Query: 183 ASSIGNVNMTKLLLNHNKD 201
           A +  + N+  +      +
Sbjct: 353 AQANNHHNIVDIFDRCRPE 371

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  128 bits (324), Expect = 6e-34
 Identities = 54/266 (20%), Positives = 88/266 (33%), Gaps = 50/266 (18%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEK---LETPLHEACCQGNHEVSAFLME-- 95
           ++ LHLA       L  E+ +     +A  N +    +TPLH A      E++  L+   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 96  ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT 155
            +P +         +   LAC QG L  V +L                           T
Sbjct: 69  CDPELRDF---RGNTPLHLACEQGCLASVGVLT----------------------QSCTT 103

Query: 156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLH 215
                IL+         + NG + LH AS  G + + +LL++   D+  Q   +G T LH
Sbjct: 104 PHLHSILKAT-------NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156

Query: 216 LAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQ 275
           LA       + V+ L    A  +R+T  G + + L          + L            
Sbjct: 157 LAVDLQNPDL-VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL-------GQLTL 208

Query: 276 DQF-----GNTVLHLAVLRKNYQFVE 296
           +                  +  +F E
Sbjct: 209 ENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 85.7 bits (213), Expect = 5e-19
 Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 12/156 (7%)

Query: 171 KTDKNGFSPLHYASSIGN----VNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL 226
           +  ++G S LH A         + + + +      L  Q N    TPLHLA I  + +I 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEI- 60

Query: 227 VAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL----AESFNTCLFHGQDQFGNTV 282
              L  +    +     G T  HLA       +   L           +    +  G+T 
Sbjct: 61  AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

Query: 283 LHLAVLRKNYQFVEYIIKETVLDIYCRNHKN-QTAL 317
           LHLA +      VE ++     D+  +   N +TAL
Sbjct: 121 LHLASIHGYLGIVELLVSLGA-DVNAQEPCNGRTAL 155

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  130 bits (329), Expect = 7e-34
 Identities = 51/256 (19%), Positives = 98/256 (38%), Gaps = 51/256 (19%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLET 76
             LL+R A +N       TALH A    +V++V        +        +   + +   
Sbjct: 57  LRLLERGADINYANVDGLTALHQACIDDNVDMV--------KFLVENGANINQPDNEGWI 108

Query: 77  PLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM 134
           PLH A   G  +++ +L+   A+      +N E  +   +A  +   ++++  +N     
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELLQNEVN----- 160

Query: 135 EFEEDSVESTPIYLAISRGHTDIAREIL-----EVRPRFAGKTDKNGFSPLHYASSIGNV 189
              +                 D   + L             +  K+G + LH A++ G  
Sbjct: 161 --RQGVDIEAARKEEERIMLRDAR-QWLNSGHINDV-----RHAKSGGTALHVAAAKGYT 212

Query: 190 NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH 249
            + KLL+    D+ ++ + DG+TPLH AA  G+ +     L  +    + +   G+T F 
Sbjct: 213 EVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEA-CRILVENLCDMEAVNKVGQTAFD 270

Query: 250 LAVRFDKYNAFKFLAE 265
           +A      +   +L E
Sbjct: 271 VADE----DILGYLEE 282

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  127 bits (322), Expect = 6e-33
 Identities = 54/306 (17%), Positives = 95/306 (31%), Gaps = 56/306 (18%)

Query: 32  ILLQRDASLN------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPL 78
             + +                A   G  E V                 +   N    T L
Sbjct: 26  PPVVKRKKTKVKFDDGAVFLAACSSGDTEEV--------LRLLERGADINYANVDGLTAL 77

Query: 79  HEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI----NQSW 132
           H+AC   N ++  FL+E  AN         E       A   G+LD+ + LI    +   
Sbjct: 78  HQACIDDNVDMVKFLVENGANINQPDN---EGWIPLHAAASCGYLDIAEYLISQGAHVG- 133

Query: 133 LMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT 192
                 +S   TP+ +A      ++ +  +        +   +  +       I   +  
Sbjct: 134 ----AVNSEGDTPLDIAEEEAMEELLQNEVN-------RQGVDIEAARKEEERIMLRDAR 182

Query: 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV 252
           + L + + +      K G T LH+AA  G  ++ +  L  +    +     G T  H A 
Sbjct: 183 QWLNSGHINDVRH-AKSGGTALHVAAAKGYTEV-LKLLIQARYDVNIKDYDGWTPLHAAA 240

Query: 253 RFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIY 307
            + K  A + L E       +       ++ G T   +A         E   K+ +L   
Sbjct: 241 HWGKEEACRILVE-------NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293

Query: 308 CRNHKN 313
            R  K+
Sbjct: 294 KREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (314), Expect = 7e-32
 Identities = 57/301 (18%), Positives = 95/301 (31%), Gaps = 50/301 (16%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
            DA       L    G    + E   +  +    + +        AC  G+ E    L+E
Sbjct: 4   ADAKQKRNEQLKRWIGSETDL-EPPVVKRKKTKVKFDD-GAVFLAACSSGDTEEVLRLLE 61

Query: 96  --ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFEEDSVESTPIY 147
             A+   A     +  +A   AC   ++D+VK L+      N       + D+    P++
Sbjct: 62  RGADINYANV---DGLTALHQACIDDNVDMVKFLVENGANIN-------QPDNEGWIPLH 111

Query: 148 LAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
            A S G+ DIA  ++       G      +  G +PL  A       + +  +N      
Sbjct: 112 AAASCGYLDIAEYLIS-----QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ---- 162

Query: 204 LQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
                D                   +L+S   +  R    G T  H+A         K L
Sbjct: 163 ---GVDIEAARKEEERIMLRDA-RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 264 AESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALD 318
                  +        +D  G T LH A      +    +++    D+   N   QTA D
Sbjct: 219 -------IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQTAFD 270

Query: 319 I 319
           +
Sbjct: 271 V 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.4 bits (215), Expect = 8e-19
 Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 31/213 (14%)

Query: 138 EDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN 197
            D+ +     L    G      E   V+ +       +G +    A S G+      LL 
Sbjct: 4   ADAKQKRNEQLKRWIGSETDL-EPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLE 61

Query: 198 H--NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
              + + A   N DG T LH A I+  V + V FL  + A+ ++    G    H A    
Sbjct: 62  RGADINYA---NVDGLTALHQACIDDNVDM-VKFLVENGANINQPDNEGWIPLHAAASCG 117

Query: 256 KYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRN 310
             +  ++L       +  G      +  G+T L +A      + ++  +    +DI    
Sbjct: 118 YLDIAEYL-------ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170

Query: 311 HKNQTAL--DIIE---------QAGTNDDATSL 332
            + +  +  D  +                 T+L
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTAL 203

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.0 bits (214), Expect = 1e-18
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 25/182 (13%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
             L+ + A +        T L +A      EL+          V  +   +E    E   
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN-------EVNRQGVDIEAARKEEER 175

Query: 84  QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
               +   +L   +            +A  +A  +G+ +V+KLLI   + +   +D    
Sbjct: 176 IMLRDARQWLNSGHINDVRHAKSG-GTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGW 233

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
           TP++ A   G  +  R ++E             +K G +    A       + +L    N
Sbjct: 234 TPLHAAAHWGKEEACRILVE-----NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

Query: 200 KD 201
             
Sbjct: 289 LL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 20/91 (21%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVA------AENEKLETP 77
           ++L+Q    +N       T LH AA +G      E  ++   LV       A N+  +T 
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGK----EEACRI---LVENLCDMEAVNKVGQTA 268

Query: 78  LHEACCQGNHEVSAFLMEANPTVATKLNHES 108
              A       +     + N   + K   +S
Sbjct: 269 FDVADEDILGYLEELQKKQNLLHSEKREKKS 299

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  125 bits (317), Expect = 2e-32
 Identities = 53/283 (18%), Positives = 95/283 (33%), Gaps = 45/283 (15%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPELV---AAENEK-LETPLHEACCQGNHEVSA 91
            D   ++A + A    +V LV         L+   A +N    E PLH+A    + ++  
Sbjct: 27  ADVHGHSASYYAIADNNVRLV----CT---LLNAGALKNLLENEFPLHQAATLEDTKIVK 79

Query: 92  FLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLA 149
            L+    + +       +  +A   A   G++  VKL + ++W + F   +   T  Y A
Sbjct: 80  ILLFSGLDDSQFDD---KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 136

Query: 150 ISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD 209
           +      I    L   P  +        S +H     G+V+M  LLL++        N  
Sbjct: 137 VMLNDVSIVSYFLSEIP--STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSL 193

Query: 210 GYTP-LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN 268
            + P + LA  N  +++ +  L     +         +     V  D     K + E   
Sbjct: 194 LFIPDIKLAIDNKDIEM-LQALFKYDIN-------IYSANLENVLLDDAEIAKMIIE--- 242

Query: 269 TCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDI 306
                           +  +      KN +  E I K   L +
Sbjct: 243 ----KHVEYKSDSYTKDLDIV-----KNNKLDEIISKNKELRL 276

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  123 bits (312), Expect = 1e-31
 Identities = 33/243 (13%), Positives = 79/243 (32%), Gaps = 41/243 (16%)

Query: 31  RILLQRDASLN-----TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPL 78
             LL   A  N       LH AA     ++V        ++        +  ++K  T L
Sbjct: 48  CTLLNAGALKNLLENEFPLHQAATLEDTKIV--------KILLFSGLDDSQFDDKGNTAL 99

Query: 79  HEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEE 138
           + A   GN +     ++ N  +        +++F  A     + +V   +++       +
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI--PSTFD 157

Query: 139 DSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSP-LHYASSIGNVNMTK 193
            ++  + I++ I  GH D+   +L+             +   F P +  A    ++ M +
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLD-----YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVR 253
            L  ++         + Y+      +    +I    +      +   +   +       +
Sbjct: 213 ALFKYD---I-----NIYSANLENVLLDDAEI-AKMIIEKHVEYKSDSYTKDLDIVKNNK 263

Query: 254 FDK 256
            D+
Sbjct: 264 LDE 266

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  107 bits (269), Expect = 7e-26
 Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 32/246 (13%)

Query: 76  TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
                   + + ++ +FL   +   A        SA   A    ++ +V  L+N   L  
Sbjct: 3   DLSRINTWK-SKQLKSFLSSKDTFKADV---HGHSASYYAIADNNVRLVCTLLNAGALKN 58

Query: 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNM 191
             E+     P++ A +   T I + +L      +G    + D  G + L+YA   GN+  
Sbjct: 59  LLENE---FPLHQAATLEDTKIVKILLF-----SGLDDSQFDDKGNTALYYAVDSGNMQT 110

Query: 192 TKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA 251
            KL +  N  L         T  + A +   V I V++  S   S         +  H+ 
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI-VSYFLSEIPSTFD-LAILLSCIHIT 168

Query: 252 VRFDKYNAFKFLAESFNTCLFHG-----QDQFGNT-VLHLAVLRKNYQFVEYIIKETVLD 305
           ++    +    L       L +       +       + LA+  K+ + ++ + K  + +
Sbjct: 169 IKNGHVDMMILL-------LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-N 220

Query: 306 IYCRNH 311
           IY  N 
Sbjct: 221 IYSANL 226

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 81.0 bits (201), Expect = 5e-17
 Identities = 20/194 (10%), Positives = 55/194 (28%), Gaps = 37/194 (19%)

Query: 31  RILLQRDASLN--------TALHLAARFGHVELVTEITKLCPELVA--AENEKL---ETP 77
           ++ ++++  L         T+ + A     V     I       ++       L    + 
Sbjct: 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSY---FLSEIPSTFDLAILLSC 164

Query: 78  LHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFE 137
           +H     G+ ++   L++   +  T  +        LA     +++++ L          
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY------- 217

Query: 138 EDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTK 193
            D    +     +     +IA+ I+E                    +   + +  +    
Sbjct: 218 -DINIYSANLENVLLDDAEIAKMIIE-----KHVEYKSDSYTKDLDIVKNNKLDEIISKN 271

Query: 194 LLLNHNKDLALQYN 207
             L       ++ N
Sbjct: 272 KELRLMYVNCVKKN 285

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  120 bits (305), Expect = 5e-32
 Identities = 53/208 (25%), Positives = 78/208 (37%), Gaps = 42/208 (20%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANP 98
           + ++H  A  G ++ + E  +    LV   +E+  TPL  A   G  E   FL+E  A+P
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIA 158
            +  K   E +SA SLA   G+ D+V LL                      + R   DI 
Sbjct: 63  HILAK---ERESALSLASTGGYTDIVGLL----------------------LERD-VDI- 95

Query: 159 REILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAA 218
                         D NG +PL YA    +V   + LL    DL  +    GYTP+ LA 
Sbjct: 96  -----------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE-ADSGYTPMDLAV 143

Query: 219 INGRVKILVAFLSSSPASFDRLTTYGET 246
             G  K+    + +      +       
Sbjct: 144 ALGYRKV-QQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.0 bits (248), Expect = 3e-24
 Identities = 41/194 (21%), Positives = 64/194 (32%), Gaps = 46/194 (23%)

Query: 111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG 170
           +      QG LD +K  + +   +  + D    TP+  A + G  +  R +LE      G
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-----WG 59

Query: 171 ----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL 226
                  K   S L  AS+ G  ++  LLL  + D+ +  + +G TPL  A     VK  
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKC- 117

Query: 227 VAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLA 286
           V  L +  A                   D                   +   G T + LA
Sbjct: 118 VEALLARGA-------------------DL-TT---------------EADSGYTPMDLA 142

Query: 287 VLRKNYQFVEYIIK 300
           V     +  + I  
Sbjct: 143 VALGYRKVQQVIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 82.5 bits (205), Expect = 2e-18
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 14/149 (9%)

Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPA 235
               +H  ++ G ++  K  L    +L  + ++ G+TPL  A+  G ++  V FL    A
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET-VRFLLEWGA 60

Query: 236 SFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRK 290
               L    E+   LA      +    L E               D  G T L  AV   
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLE-------RDVDINIYDWNGGTPLLYAVRGN 113

Query: 291 NYQFVEYIIKETVLDIYCRNHKNQTALDI 319
           + + VE ++     D+        T +D+
Sbjct: 114 HVKCVEALLARGA-DLTTEADSGYTPMDL 141

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  122 bits (308), Expect = 7e-32
 Identities = 29/217 (13%), Positives = 64/217 (29%), Gaps = 18/217 (8%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
              +  A          E+     + +    +  +T   +   +G   +           
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIPSNY------ 65

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
             +      +    A ++G+L  ++  ++    +    D   ST +Y A   GH DI   
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEM 124

Query: 161 ILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHL 216
           +             + +K G + LH A+  G  ++ +LLL       L+ N +      +
Sbjct: 125 LFTQ----PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-NIEKKLAFDM 179

Query: 217 AAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVR 253
           A       + +     + A               +  
Sbjct: 180 ATNAACASL-LKKKQGTDAVRTLSNAEDYLDDEDSDL 215

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  117 bits (296), Expect = 3e-30
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 21/192 (10%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
                +T        G   L+          VA + E ++ PLHEA  +GN       ++
Sbjct: 41  ITDMSDTNWWKGTSKGRTGLIPSN------YVAEQAESIDNPLHEAAKRGNLSWLRECLD 94

Query: 96  --ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
                    K      +A   AC  GH D+V++L  Q  +   +++ +  T ++ A  +G
Sbjct: 95  NRVGVNGLDK---AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG 151

Query: 154 HTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD 209
           + DI + +L       G      +         A++    ++ K     +    L  N +
Sbjct: 152 YADIVQLLLA-----KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS-NAE 205

Query: 210 GYTPLHLAAING 221
            Y     + +  
Sbjct: 206 DYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  103 bits (259), Expect = 3e-25
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 24/229 (10%)

Query: 94  MEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
           M   P    K     Q     A           L  +   +      +  T  +   S+G
Sbjct: 1   MSKPPPKPVK---PGQVKVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGTSKG 56

Query: 154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTP 213
            T +      +   +  +  ++  +PLH A+  GN++  +  L++   +    +K G T 
Sbjct: 57  RTGL------IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTA 109

Query: 214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFH 273
           L+ A   G   I+    +      ++    G+T  H A      +  + L       L  
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL-------LAK 162

Query: 274 G-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
           G     ++        +A        ++             N ++    
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA-VRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 14/88 (15%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVA------AENEKLETPLHEACCQGNHEVSAFLM 94
           +TALH AA  G+ ++V    +L   L+A        N + +     A       +     
Sbjct: 141 DTALHAAAWKGYADIV----QL---LLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ 193

Query: 95  EANPTVATKLNHESQSAFSLACRQGHLD 122
             +       N E       +  + H  
Sbjct: 194 GTDAVRTLS-NAEDYLDDEDSDLEHHHH 220

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  117 bits (297), Expect = 3e-30
 Identities = 47/227 (20%), Positives = 83/227 (36%), Gaps = 28/227 (12%)

Query: 85  GNH-EVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFE 137
           G+   V +  +    ++  + +   ++A  LA R    D  K L+      N        
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-------I 53

Query: 138 EDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN 197
           +D++  TP++ A+S     + + ++  R         +G +PL  A+ +    M + L+N
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113

Query: 198 HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKY 257
            + D+    +  G + LH AA    V      L  + A+ D      ET   LA R   Y
Sbjct: 114 SHADVNAV-DDLGKSALHWAAAVNNVDA-AVVLLKNGANKDMQNNREETPLFLAAREGSY 171

Query: 258 NAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYII 299
              K L       L H       D        +A  R ++  V  + 
Sbjct: 172 ETAKVL-------LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (287), Expect = 5e-29
 Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 25/240 (10%)

Query: 51  GHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANPTVATKLNHES 108
               ++++       L    +   ET LH A      + +  L+E  A+  +   +    
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG--- 58

Query: 109 QSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRF 168
           ++    A       V ++LI              +TP+ LA       +  +++      
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN----- 113

Query: 169 AG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
           +       D  G S LH+A+++ NV+   +LL +  +  +Q N    TPL LAA  G  +
Sbjct: 114 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYE 172

Query: 225 ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLH 284
                L    A+ D           +A     ++  + L         +      +  LH
Sbjct: 173 T-AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL-------DEYNLV--RSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  113 bits (286), Expect = 8e-29
 Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 43/211 (20%)

Query: 41  NTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFL 93
            TALHLAAR+   +          +           ++    TPLH A       V   L
Sbjct: 26  ETALHLAARYSRSDAA--------KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 77

Query: 94  MEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFEEDSVESTPIY 147
           +    T      H+  +   LA R     +++ LI      N         D +  + ++
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-------AVDDLGKSALH 130

Query: 148 LAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH--NKD 201
            A +  + D A  +L+      G      +    +PL  A+  G+    K+LL+H  N+D
Sbjct: 131 WAAAVNNVDAAVVLLK-----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185

Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
           +    +     P  +A       I V  L  
Sbjct: 186 IT---DHMDRLPRDIAQERMHHDI-VRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  106 bits (268), Expect = 2e-26
 Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 29/213 (13%)

Query: 119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDK 174
               V+   I Q   +  + D    T ++LA     +D A+ +LE     A       D 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-----ASADANIQDN 56

Query: 175 NGFSPLHYASSIGNVNMTKLLLNH---NKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
            G +PLH A S     + ++L+ +   + D       DG TPL LAA      + +  L 
Sbjct: 57  MGRTPLHAAVSADAQGVFQILIRNRATDLDAR---MHDGTTPLILAARLAVEGM-LEDLI 112

Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLA 286
           +S A  + +   G++  H A   +  +A   L       L +G     Q+    T L LA
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVL-------LKNGANKDMQNNREETPLFLA 165

Query: 287 VLRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
               +Y+  + ++     +    +H ++   DI
Sbjct: 166 AREGSYETAKVLLDHFA-NRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 93.2 bits (233), Expect = 1e-21
 Identities = 37/212 (17%), Positives = 66/212 (31%), Gaps = 58/212 (27%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL--------VAAENEKLE 75
           + LL+  A  N       T LH A       +         ++        + A      
Sbjct: 42  KRLLEASADANIQDNMGRTPLHAAVSADAQGVF--------QILIRNRATDLDARMHDGT 93

Query: 76  TPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI----- 128
           TPL  A       +   L+   A+           +SA   A    ++D   +L+     
Sbjct: 94  TPLILAARLAVEGMLEDLINSHADVNAVDD---LGKSALHWAAAVNNVDAAVVLLKNGAN 150

Query: 129 -NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYA 183
            +        +++ E TP++LA   G  + A+ +L+            TD     P   A
Sbjct: 151 KD-------MQNNREETPLFLAAREGSYETAKVLLD-----HFANRDITDHMDRLPRDIA 198

Query: 184 SSIGNVNMTKLLLNHNKDLALQYNKDGYTPLH 215
               + ++ +LL  +        N      LH
Sbjct: 199 QERMHHDIVRLLDEY--------NLVRSPQLH 222

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  114 bits (288), Expect = 5e-29
 Identities = 49/214 (22%), Positives = 80/214 (37%), Gaps = 36/214 (16%)

Query: 42  TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA 101
           + L LAA+   V+ ++++ K     V       ET LH A    N E +  LMEA P + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 102 TKLNHES----QSAFSLACRQGHLDVVKLLINQ------------SWLMEFEEDSVESTP 145
            +         Q+A  +A    ++++V+ L+ +                          P
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 146 IYLAISRGHTDIAREIL-----EVRPRFAGKTDKNGFSPLHYASSIGN----VNMTKLLL 196
           +  A   G  +I   +L     ++R       D  G + LH      N      M  LLL
Sbjct: 125 LSFAACVGSEEIV-RLLIEHGADIR-----AQDSLGNTVLHILILQPNKTFACQMYNLLL 178

Query: 197 NHN-----KDLALQYNKDGYTPLHLAAINGRVKI 225
           +++     K L L  N  G TP  LA + G + +
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 74.2 bits (183), Expect = 4e-15
 Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 170 GKTDKNGFSPLHYASSIGNVN-MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA 228
            ++      PL  A+   +V  ++KLL     ++  +    G T LH+AA+   ++  + 
Sbjct: 3   WES------PLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMV 55

Query: 229 FLSS----SPASFDRLTTYGETVFHLAVRFDKYNAFKFL-----------AESFNTCLFH 273
            + +               G+T  H+AV     N  + L             S      H
Sbjct: 56  LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115

Query: 274 GQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLK 333
               +G   L  A    + + V  +I+    DI  ++    T L I+        A  + 
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGA-DIRAQDSLGNTVLHILILQPNKTFACQMY 174

Query: 334 KL 335
            L
Sbjct: 175 NL 176

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  113 bits (285), Expect = 7e-29
 Identities = 37/214 (17%), Positives = 78/214 (36%), Gaps = 39/214 (18%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHE 88
           +   +   L  A +    ++         E+       V   + +  TPL+ A    + E
Sbjct: 2   KTYEVGALLEAANQRDTKKVK--------EILQDTTYQVDEVDTEGNTPLNIAVHNNDIE 53

Query: 89  VSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYL 148
           ++  L++    +  + N  S S +  A  QG  +++  ++  +     + +      +  
Sbjct: 54  IAKALIDRGADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP 112

Query: 149 AISRGHTDIAREILEVRPRFAG-----KTDKNGFSPLHYASSIGNVN-----MTKLLLNH 198
           A  +GH D  + +LE      G       +  G++ L  A  +   N     + KLL+ +
Sbjct: 113 AAEKGHIDNVKLLLE-----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN 167

Query: 199 --NKDLALQYNKDGYTPLHLAAINGR---VKILV 227
             ++ +    +  G T +  A   G     KIL 
Sbjct: 168 GADQSIK---DNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  102 bits (258), Expect = 3e-25
 Identities = 42/216 (19%), Positives = 82/216 (37%), Gaps = 39/216 (18%)

Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
            +E  +    A ++    V ++L + ++ ++ E D+  +TP+ +A+     +IA+ +++ 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHNNDIEIAKALID- 60

Query: 165 RPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH---NKDLALQYNKDGYTPLHLA 217
                G      +    SP  YA + G   +   +L H   + +     N+ G   L  A
Sbjct: 61  ----RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH---NRYGGNALIPA 113

Query: 218 AINGR---VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF-----KFLAESFNT 269
           A  G    VK+L   L       D    +G T    AV   + N       K L      
Sbjct: 114 AEKGHIDNVKLL---LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL------ 164

Query: 270 CLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
            + +G     +D  G T +  A  +   +  + + +
Sbjct: 165 -MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 94.1 bits (235), Expect = 3e-22
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 34/191 (17%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVA------AENEKLETP 77
            IL      ++       T L++A          EI K    L+        +N   ++P
Sbjct: 23  EILQDTTYQVDEVDTEGNTPLNIAVHNND----IEIAKA---LIDRGADINLQNSISDSP 75

Query: 78  LHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFE 137
              A  QG  E+ A++++       K N    +A   A  +GH+D VKLL+         
Sbjct: 76  YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135

Query: 138 EDSVESTPIYLAI-----SRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGN 188
           ++    T +  A+     ++ + DI + ++E      G      D +G + + YA+  G 
Sbjct: 136 QNDFGYTALIEAVGLREGNQLYQDIVKLLME-----NGADQSIKDNSGRTAMDYANQKGY 190

Query: 189 VNMTKLLLNHN 199
             ++K+L  +N
Sbjct: 191 TEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 84.4 bits (210), Expect = 6e-19
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 15/151 (9%)

Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
                + L  A+      + ++L +    +    + +G TPL++A  N  ++I    L  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEI-AKALID 60

Query: 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG------QDQFGNTVLHLA 286
             A  +   +  ++ +  A    +     ++       L H        +++G   L  A
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYM-------LKHATPDLNKHNRYGGNALIPA 113

Query: 287 VLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
             + +   V+ ++++   DI  +N    TAL
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  107 bits (270), Expect = 3e-27
 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 31/182 (17%)

Query: 41  NTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFL 93
           + ++H  A  G +  +                 +   +E+  TPL  A   G   V  FL
Sbjct: 4   SLSVHQLAAQGEMLYL--------ATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 55

Query: 94  ME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAIS 151
           ++  A+P +  K     +SA SLAC +G+ D+VK+L++    +  E D    TP+  A+ 
Sbjct: 56  LQNGADPQLLGK---GRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVH 111

Query: 152 RGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
             H    + +LE     +G        +G++ +  A ++G  ++ +++ +H   L     
Sbjct: 112 GNHVKCVKMLLE-----SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN-I 165

Query: 208 KD 209
           K+
Sbjct: 166 KE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 97.5 bits (244), Expect = 8e-24
 Identities = 35/169 (20%), Positives = 56/169 (33%), Gaps = 27/169 (15%)

Query: 143 STPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           S  ++   ++G        +E            TD+ GF+PL +A++ G + + + LL +
Sbjct: 4   SLSVHQLAAQGEMLYLATRIE-----QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 199 --NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDK 256
             +  L     K   + L LA   G   I V  L       +     G T    AV  + 
Sbjct: 59  GADPQLL---GKGRESALSLACSKGYTDI-VKMLLDCGVDVNEYDWNGGTPLLYAVHGNH 114

Query: 257 YNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
               K L E        G     +   G   + LAV        + I  
Sbjct: 115 VKCVKMLLE-------SGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 82.1 bits (204), Expect = 2e-18
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 15/150 (10%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
                +H  ++ G +      +     +    +++G+TPL  AA +G++ + V FL  + 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAV-VEFLLQNG 59

Query: 235 ASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLR 289
           A    L    E+   LA      +  K L       L  G      D  G T L  AV  
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVKML-------LDCGVDVNEYDWNGGTPLLYAVHG 112

Query: 290 KNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
            + + V+ +++    D          ++D+
Sbjct: 113 NHVKCVKMLLESGA-DPTIETDSGYNSMDL 141

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  109 bits (275), Expect = 4e-27
 Identities = 31/257 (12%), Positives = 71/257 (27%), Gaps = 40/257 (15%)

Query: 42  TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME-ANPTV 100
               +  + GH             + A    + ETP   A  + + +  + L+E  +   
Sbjct: 17  MEYLIEWKDGHSPSW----VPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDA 72

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
               +   ++A       G    V+LL      ++  +     T +++A      ++   
Sbjct: 73  V---DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 161 ILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHL 216
           ++E      G      D+ G + L  A  I         +   + +      +    +  
Sbjct: 130 LVE-----LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI----GLEKVINVLE 180

Query: 217 AAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQD 276
             +    ++    +             G+ V +L    D  +              H  +
Sbjct: 181 GQVFEYAEV-DEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGV-------HVAE 224

Query: 277 ---QFGNTVLHLAVLRK 290
              +     L  AV   
Sbjct: 225 DVAKDYEDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  105 bits (265), Expect = 8e-26
 Identities = 41/245 (16%), Positives = 72/245 (29%), Gaps = 40/245 (16%)

Query: 100 VATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAR 159
           + ++   E    + +  + GH          +     +  S   TP + A  +       
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA----ADVVSEYETPWWTAARKADEQALS 62

Query: 160 EILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLH 215
           ++LE             D+NG + L + + +G+    +LL     DL  +  + G T LH
Sbjct: 63  QLLE------DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116

Query: 216 LAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL--------AESF 267
           +AA   R ++ V  L    A  +     G T   LA    K                E  
Sbjct: 117 MAAGYVRPEV-VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 175

Query: 268 NTCLFHG------------QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHK-NQ 314
              L               +   G  V +L   +             V +      K  +
Sbjct: 176 INVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH-VAED---VAKDYE 231

Query: 315 TALDI 319
             L+ 
Sbjct: 232 DGLEY 236

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 94.2 bits (235), Expect = 8e-22
 Identities = 33/229 (14%), Positives = 54/229 (23%), Gaps = 53/229 (23%)

Query: 31  RILLQRDASLN----TALHLAARFGHVELVTEITKLCPELVA-----AENEKLETPLHEA 81
                  A +     T    AAR        +       L+      A +E   T L   
Sbjct: 32  VPSSYIAADVVSEYETPWWTAARKAD----EQALSQ---LLEDRDVDAVDENGRTALLFV 84

Query: 82  CCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL------INQSWLME 135
              G+ +    L EA   +  +      +A  +A      +VV+ L      I       
Sbjct: 85  AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE------ 138

Query: 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKT---------------------DK 174
             ED    T + LA     T      ++   R   +                        
Sbjct: 139 -VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRG 197

Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV 223
            G    +        +   +   H  +      KD    L  A     +
Sbjct: 198 KGKDVEYLVRWKDGGDCEWVKGVHVAEDV---AKDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 26/160 (16%)

Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKD-----LALQY-----NKDGYTPLHLAAINGRVKI 225
           G       S        + L+          +   Y       +  TP   AA     + 
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQA 60

Query: 226 LVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQD------QFG 279
           L   L       D +   G T              + LAE        G D      + G
Sbjct: 61  LSQLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAE-------AGADLDHRDMRGG 111

Query: 280 NTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
            T LH+A      + VE +++    DI   + +  TAL++
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALEL 150

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (270), Expect = 6e-27
 Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 38/206 (18%)

Query: 37  DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA 96
           D +      +       + + +       L    +    TPL  AC  G       L+E 
Sbjct: 5   DKNGEIVEKIKDEKSINQNL-DF------LRNYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 97  NPTVATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFEEDSVESTPIYLAI 150
              +  K + E  +A   A +   L + + L+      N        +D    TP+  +I
Sbjct: 58  FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-------TKDFSGKTPLMWSI 109

Query: 151 SRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLAL 204
             G+++++  +LE      G      +  G +PL  AS  G   + K LL    +     
Sbjct: 110 IFGYSEMSYFLLEH-----GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR- 163

Query: 205 QYNKDGYTPLHLAAINGR---VKILV 227
             +  G T    A I GR   +KI  
Sbjct: 164 --DLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 95.5 bits (239), Expect = 7e-23
 Identities = 43/246 (17%), Positives = 76/246 (30%), Gaps = 80/246 (32%)

Query: 71  NEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI-- 128
           ++  E        +  ++   FL           +  +++   +AC  G  + +  L+  
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 129 ----NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPL 180
                       ++D   ST +  A+      IA ++L       G      D +G +PL
Sbjct: 58  FDKLE-------DKDIEGSTALIWAVKNNRLGIAEKLLSK-----GSNVNTKDFSGKTPL 105

Query: 181 HYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFD 238
            ++   G   M+  LL H  N +     N +G TPL +A+  GR                
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDR---NLEGETPLIVASKYGRS--------------- 147

Query: 239 RLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQ 293
                 E V             K L       L  G     +D  G T    A +    +
Sbjct: 148 ------EIV-------------KKL-------LELGADISARDLTGLTAEASARIFGRQE 181

Query: 294 FVEYII 299
            ++   
Sbjct: 182 VIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.2 bits (220), Expect = 3e-20
 Identities = 27/177 (15%), Positives = 59/177 (33%), Gaps = 38/177 (21%)

Query: 41  NTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFL 93
            T L +A   G    +        +        +  ++ +  T L  A       ++  L
Sbjct: 36  RTPLMVACMLGMENAI--------DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87

Query: 94  MEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFEEDSVESTPIY 147
           +     V TK +   ++    +   G+ ++   L+      N       + +    TP+ 
Sbjct: 88  LSKGSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-------DRNLEGETPLI 139

Query: 148 LAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNK 200
           +A   G ++I +++LE+     G      D  G +    A   G   + K+     +
Sbjct: 140 VASKYGRSEIVKKLLEL-----GADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 85.1 bits (212), Expect = 4e-19
 Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 26/183 (14%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH--NKD 201
               +   +        +   R       D    +PL  A  +G  N    L+ +    +
Sbjct: 10  IVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLVENFDKLE 62

Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
                + +G T L  A  N R+ I    L S  ++ +     G+T    ++ F       
Sbjct: 63  DK---DIEGSTALIWAVKNNRLGI-AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118

Query: 262 FLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTA 316
           FL       L HG     ++  G T L +A      + V+ +++    DI  R+    TA
Sbjct: 119 FL-------LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTA 170

Query: 317 LDI 319
              
Sbjct: 171 EAS 173

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  109 bits (274), Expect = 8e-27
 Identities = 39/264 (14%), Positives = 85/264 (32%), Gaps = 58/264 (21%)

Query: 42  TALHLAARFGHVELVTEITKLCPELV-------AAENEKLETPLHEACC---QGNHEVSA 91
            ++  A    + + +  +                 + E  +T L +A      G ++  A
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 92  FLME--ANPTVATKL--------NHESQSAFSLACRQGHLDVVKLLI----------NQS 131
            L++         +          ++ Q+A  +A  + ++ +V LL+          N  
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134

Query: 132 WLMEFEEDSVE---STPIYLAISRGHTDIAREILEVRPRFAGKT--DKNGFSPLHYASSI 186
           +  + +          P+ LA       I + +L+   + A  +  D  G + LH    +
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV 194

Query: 187 GNVNMTKLL---------------LNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
            +  +                   L+    L    N+ G TPL LAA +G++ + +A++ 
Sbjct: 195 ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV-LAYIL 253

Query: 232 SSPASFDRLTTYGETVFHLAVRFD 255
                      +     H A    
Sbjct: 254 QREI-------HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  107 bits (270), Expect = 3e-26
 Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 57/262 (21%)

Query: 9   LSEAIVRNDKQA---LINLVGCSNKR---ILLQRDASLNTALHLA---ARFGHVELVT-- 57
           + +A+ +++ Q    L+  +  S KR      +   +  T L  A      G  + +   
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 58  --------EITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--AN---------- 97
                    + +           K +T LH A  + N  +   L+E  A+          
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 98  -PTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM--EFEEDSVESTPIYLAISRGH 154
             T      +  +   SLA     L +VK L+  SW        DSV +T ++  +    
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196

Query: 155 TDIAR---------EILEV------RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
             +           EIL +        +    T++ G +PL  A+S G + +   +L   
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR- 255

Query: 200 KDLALQYNKDGYTPLHLAAING 221
                          H AA + 
Sbjct: 256 -------EIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 97.9 bits (244), Expect = 7e-23
 Identities = 50/294 (17%), Positives = 84/294 (28%), Gaps = 77/294 (26%)

Query: 69  AENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI 128
                    + +A  Q N +                             +  L  ++   
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQE---------------------------LESLLPFLQRSK 40

Query: 129 NQSWLMEFEEDSVESTPIYLA---ISRGHTDIAREILE------VRPRFAG----KTDKN 175
            +    EF++     T +  A   +  G  D    +L+         +F       +   
Sbjct: 41  KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYK 100

Query: 176 GFSPLHYASSIGNVNMTKLLLNH-------------NKDLALQYNKDGYTPLHLAAINGR 222
           G + LH A    N+ +  LL+ +              K         G  PL LAA   +
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 223 ---VKILVAFLSSSPASFDRLTTYGETVFHLAVRF--DKYNAFKFLAESFNTCLFHG--- 274
              VK L+   S  PA      + G TV H  V    +  +  KF+   +N  L  G   
Sbjct: 161 LAIVKFLLQN-SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL 219

Query: 275 ---------QDQFGNTVLHLAVLRKNYQFVEYIIK-----ETVLDIYCRN-HKN 313
                     ++ G T L LA        + YI++              + H +
Sbjct: 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 30/221 (13%), Positives = 56/221 (25%), Gaps = 40/221 (18%)

Query: 2   AQGMAQNLSEAIVRN--DKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELV--- 56
           A     N     +    D     + +                TALH+A    ++ LV   
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 57  ----------TEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA--TKL 104
                                       E PL  A C     +  FL++ +   A  +  
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180

Query: 105 NHESQSAFSLACRQGHLDVVKLL---------------INQSWLMEFEEDSVESTPIYLA 149
           +    +            V                   ++ +  +E   +    TP+ LA
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 150 ISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN 190
            S G   +   IL+         + +     H A+   + +
Sbjct: 241 ASSGKIGVLAYILQR--------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.4 bits (183), Expect = 7e-15
 Identities = 32/218 (14%), Positives = 58/218 (26%), Gaps = 44/218 (20%)

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAG-------KTDKNGFSPLHYASSI--- 186
                +   I+ A+++ +      +L    R          K  + G + L  A      
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67

Query: 187 GNVNMTKLLLNHNKDL----------ALQYNKDGYTPLHLAAINGRVKILVAFLSSSPAS 236
           G  +   LLL+  +                   G T LH+A     + + V  L  + A 
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL-VTLLVENGAD 126

Query: 237 FDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVE 296
                                                    FG   L LA        V+
Sbjct: 127 VQAAANGDFFKKTKG---------------------RPGFYFGELPLSLAACTNQLAIVK 165

Query: 297 YIIKETVL--DIYCRNHKNQTALDIIEQAGTNDDATSL 332
           ++++ +    DI  R+    T L  + +   N    + 
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  105 bits (266), Expect = 1e-26
 Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 26/170 (15%)

Query: 71  NEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI-- 128
           + +    +   C +GN       ++       + +    S    ACR+G   VV++LI  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 129 ----NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPL 180
               N         +  + TP++LA S GH DI +++L+             +++G  PL
Sbjct: 62  GARIN-------VMNRGDDTPLHLAASHGHRDIVQKLLQ-----YKADINAVNEHGNVPL 109

Query: 181 HYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR---VKILV 227
           HYA   G   + + L+ +   +++  NK G  P+  A    R    +   
Sbjct: 110 HYACFWGQDQVAEDLVANGALVSIC-NKYGEMPVDKAKAPLRELLRERAE 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  104 bits (263), Expect = 3e-26
 Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 34/196 (17%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANP 98
              +    R G+   V          +   ++   +PLH AC +G   V   L+   A  
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFEEDSVESTPIYLAISR 152
            V  +      +   LA   GH D+V+ L+      N         +   + P++ A   
Sbjct: 66  NVMNR---GDDTPLHLAASHGHRDIVQKLLQYKADIN-------AVNEHGNVPLHYACFW 115

Query: 153 GHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK 208
           G   +A +++       G      +K G  P+  A +     + +      ++L    N+
Sbjct: 116 GQDQVAEDLVA-----NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL----NR 166

Query: 209 DGYTPLHLAAINGRVK 224
               P       G  +
Sbjct: 167 ---IPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 97.9 bits (245), Expect = 1e-23
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 18/164 (10%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH--NKD 201
             I+     G+    R  L+       + D +GFSPLH+A   G   + ++L+      +
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
           +    N+   TPLHLAA +G   I V  L    A  + +  +G    H A  + +    +
Sbjct: 67  VM---NRGDDTPLHLAASHGHRDI-VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAE 122

Query: 262 FLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
            L       + +G      +++G   +  A         E   K
Sbjct: 123 DL-------VANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 87.1 bits (217), Expect = 5e-20
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 14/152 (9%)

Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
                  +      GN    +L L++ ++   Q +  G++PLH A   GR  + V  L  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAV-VEMLIM 60

Query: 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAV 287
             A  + +    +T  HLA      +  + L       L +       ++ GN  LH A 
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKL-------LQYKADINAVNEHGNVPLHYAC 113

Query: 288 LRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
                Q  E ++      +   N   +  +D 
Sbjct: 114 FWGQDQVAEDLVANGA-LVSICNKYGEMPVDK 144

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  107 bits (269), Expect = 2e-26
 Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 23/225 (10%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAA-----ENEKLETPLHEACCQGNHEVSAFLME 95
             +L    R    +  +       E +A       N      L ++  +G  ++   ++ 
Sbjct: 6   QVSLPPGKRTNLRKTGS-------ERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 96  --ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
              +P++    N E  +A   A   GH ++VK L+     +    DS   TP++ A S  
Sbjct: 59  EVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCN 114

Query: 154 HTDIAREILEVRPRFAGKT--DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGY 211
           +  + + ++E        T  D    +        G    ++ L    + + +  NK   
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM-NKGVI 173

Query: 212 TPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDK 256
             L         ++          +        E  +  A   DK
Sbjct: 174 YALWDYEPQNDDEL--PMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 99.6 bits (249), Expect = 1e-23
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 41/223 (18%)

Query: 31  RILLQRDASLN------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETP 77
              +     +         L  ++  G  +LV        +         +  N++  T 
Sbjct: 22  SERIAHGMRVKFNPLPLALLLDSSLEGEFDLV--------QRIIYEVDDPSLPNDEGITA 73

Query: 78  LHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ--SWL 133
           LH A C G+ E+  FL++   N   A     +  +    A    ++ V K L+    +  
Sbjct: 74  LHNAVCAGHTEIVKFLVQFGVNVNAADS---DGWTPLHCAASCNNVQVCKFLVESGAAVF 130

Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
                D   +      +  G+T  ++ +  V+ +  G  +K     L       +  +  
Sbjct: 131 AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDELPM 189

Query: 194 -----LLLNHNKDL-------ALQYNKDGYTPLHLAAINGRVK 224
                + + H +D        A   +K+GY P +L  +  R+K
Sbjct: 190 KEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIK 232

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 93.4 bits (233), Expect = 1e-21
 Identities = 38/239 (15%), Positives = 66/239 (27%), Gaps = 57/239 (23%)

Query: 109 QSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRF 168
           Q +     R          I     M  + + +    +  +   G  D+ + I+      
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHG--MRVKFNPLPLALLLDSSLEGEFDLVQRIIYE---- 59

Query: 169 AG----KTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGR 222
                   +  G + LH A   G+  + K L+    N + A   + DG+TPLH AA    
Sbjct: 60  -VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA---DSDGWTPLHCAASCNN 115

Query: 223 VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTV 282
           V++   FL  S A+   +T                                  D      
Sbjct: 116 VQV-CKFLVESGAAVFAMTYS--------------------------------DMQTAAD 142

Query: 283 LHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAG-------TNDDATSLKK 334
               +     Q  +++       +   N     AL   E            D  T + +
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQE-KMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHR 200

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 17/160 (10%)

Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
           +  G   L               + H     +++N      L  +++ G   + V  +  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMR--VKFNPLPLALLLDSSLEGEFDL-VQRIIY 58

Query: 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAV 287
                      G T  H AV        KFL       +  G      D  G T LH A 
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFL-------VQFGVNVNAADSDGWTPLHCAA 111

Query: 288 LRKNYQFVEYIIKETVLDIYCRNHK-NQTALDIIEQAGTN 326
              N Q  +++++     ++   +   QTA D  E+    
Sbjct: 112 SCNNVQVCKFLVESGA-AVFAMTYSDMQTAADKCEEMEEG 150

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  103 bits (259), Expect = 6e-26
 Identities = 42/193 (21%), Positives = 60/193 (31%), Gaps = 48/193 (24%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--ANP 98
              L  AA  G V+ V  +         A N   +T L      G+  ++  L++  A+P
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP 61

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIA 158
            V         S    A R G LD +K+L+                        G  D+ 
Sbjct: 62  NVQDT---SGTSPVHDAARTGFLDTLKVLV----------------------EHG-ADV- 94

Query: 159 REILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH-NKDLALQYNKDGYTPLHLA 217
                         D  G  P+H A   G+  +   L    +       +  G TPL LA
Sbjct: 95  -----------NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRR---DARGLTPLELA 140

Query: 218 AINGR---VKILV 227
              G    V IL 
Sbjct: 141 LQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.9 bits (219), Expect = 1e-20
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 10/159 (6%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH--NKD 201
             +  A +RG     R +L          ++ G + L      G+  +   LL    + +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62

Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
           +    +  G +P+H AA  G +   +  L    A  +     G    HLAV+        
Sbjct: 63  VQ---DTSGTSPVHDAARTGFLDT-LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 262 FLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
           FLA   +    H +D  G T L LA+ R     V+ +  
Sbjct: 119 FLAAESD---LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 69.4 bits (171), Expect = 3e-14
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 22/152 (14%)

Query: 176 GFSPLHYASSIGNVNMTKLLLNH---NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
               L  A++ G+V   + LL+    + D     N+ G T L +    G   I    L  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDAL---NRFGKTALQVMM-FGSTAI-ALELLK 56

Query: 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAV 287
             AS +   T G +  H A R    +  K L E       HG      D  G   +HLAV
Sbjct: 57  QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-------HGADVNVPDGTGALPIHLAV 109

Query: 288 LRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
              +   V ++  E+  D++ R+ +  T L++
Sbjct: 110 QEGHTAVVSFLAAES--DLHRRDARGLTPLEL 139

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  101 bits (255), Expect = 3e-25
 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 31/178 (17%)

Query: 65  ELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVV 124
                    L   L EA   G  +    LM     V  + +    +   LA   GHL++V
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIV 63

Query: 125 KLLI------NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDK 174
           ++L+      N         D    TP+ LA   GH +I   +L+      G      D 
Sbjct: 64  EVLLKNGADVN-------AVDHAGMTPLRLAALFGHLEIVEVLLK-----NGADVNANDM 111

Query: 175 NGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGR---VKILV 227
            G +PLH A+  G++ + ++LL +  + +     +K G T   ++  NG     +IL 
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ---DKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 98.2 bits (246), Expect = 6e-24
 Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 42/187 (22%)

Query: 32  ILLQRDASLNTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQ 84
                 + L   L  AAR G  + V         +       V AE+    TPLH A   
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEV--------RILMANGADVNAEDASGWTPLHLAAFN 57

Query: 85  GNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEF 136
           G+ E+   L++  A+            +   LA   GHL++V++L+      N       
Sbjct: 58  GHLEIVEVLLKNGADVNAVDH---AGMTPLRLAALFGHLEIVEVLLKNGADVN------- 107

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMT 192
             D    TP++LA   GH +I   +L+      G      DK G +    +   GN ++ 
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKN-----GADVNAQDKFGKTAFDISIDNGNEDLA 162

Query: 193 KLLLNHN 199
           ++L   N
Sbjct: 163 EILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 93.6 bits (234), Expect = 2e-22
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 28/162 (17%)

Query: 114 LACRQGHLDVVKLLI------NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPR 167
            A R G  D V++L+      N        ED+   TP++LA   GH +I   +L+    
Sbjct: 20  EAARAGRDDEVRILMANGADVN-------AEDASGWTPLHLAAFNGHLEIVEVLLK---- 68

Query: 168 FAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAING 221
             G      D  G +PL  A+  G++ + ++LL +  + +     + +G+TPLHLAA+ G
Sbjct: 69  -NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN---DMEGHTPLHLAAMFG 124

Query: 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
            ++I V  L  + A  +    +G+T F +++     +  + L
Sbjct: 125 HLEI-VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 92.4 bits (231), Expect = 5e-22
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 27/168 (16%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH- 198
             +  A   G  D  R ++       G      D +G++PLH A+  G++ + ++LL + 
Sbjct: 16  KKLLEAARAGRDDEVRILMAN-----GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 199 -NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKY 257
            + +     +  G TPL LAA+ G ++I V  L  + A  +     G T  HLA  F   
Sbjct: 71  ADVNAV---DHAGMTPLRLAALFGHLEI-VEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126

Query: 258 NAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
              + L       L +G     QD+FG T   +++   N    E + K
Sbjct: 127 EIVEVL-------LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.6 bits (125), Expect = 7e-08
 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF 260
                +  D    L  AA  GR    V  L ++ A  +     G T  HLA         
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDE-VRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 261 KFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT 315
           + L       L +G      D  G T L LA L  + + VE ++K    D+   + +  T
Sbjct: 64  EVL-------LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA-DVNANDMEGHT 115

Query: 316 AL 317
            L
Sbjct: 116 PL 117

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  102 bits (256), Expect = 8e-25
 Identities = 37/216 (17%), Positives = 66/216 (30%), Gaps = 35/216 (16%)

Query: 31  RILLQRDASLN----------TALHLAARFGHVELVTEITKLCPEL-------VAAENEK 73
           R +L++  S              L  AA  G +E+V        +         +  NE+
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVV--------QQAVKEMNDPSQPNEE 53

Query: 74  LETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQS 131
             T LH A C  N+ +  FL+   AN       +    +    A       +   L+   
Sbjct: 54  GITALHNAICGANYSIVDFLITAGANVNSP---DSHGWTPLHCAASCNDTVICMALVQHG 110

Query: 132 WLMEFEEDSVESTPIYLA--ISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNV 189
             +     S  +T          G+ D A  + +V     G  +      L   S+    
Sbjct: 111 AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSA-EFG 168

Query: 190 NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKI 225
           +        +    L+ +    T    AA++G+   
Sbjct: 169 DELSFREGESVT-VLRRDGPEETDWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 96.9 bits (242), Expect = 7e-23
 Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 30/211 (14%)

Query: 92  FLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLA 149
            ++    +P  A +           A   G L+VV+  + +      + +    T ++ A
Sbjct: 3   SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNA 61

Query: 150 ISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQ 205
           I   +  I   ++      AG      D +G++PLH A+S  +  +   L+ H   +   
Sbjct: 62  ICGANYSIVDFLIT-----AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116

Query: 206 YNKDGYTPLHLAAINGR-VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLA 264
              DG T                 +L+    S   + +                + +F  
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW-------DYSAEFGD 169

Query: 265 ESFNTCLFHGQ-------DQFGNTVLHLAVL 288
           E        G+       D    T    A L
Sbjct: 170 E---LSFREGESVTVLRRDGPEETDWWWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVA 228
           +   N    L  A+  G + + +  +    +       N++G T LH A       I V 
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP---NEEGITALHNAICGANYSI-VD 71

Query: 229 FLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVL 288
           FL ++ A+ +   ++G T  H A   +       L +     +F      G T       
Sbjct: 72  FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDP 130

Query: 289 RKNYQF--VEYIIKETVLDIYCRNHKNQTAL 317
            +        Y+       +   N     AL
Sbjct: 131 YREGYADCATYLADVEQ-SMGLMNSGAVYAL 160

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  100 bits (251), Expect = 9e-25
 Identities = 43/173 (24%), Positives = 65/173 (37%), Gaps = 27/173 (15%)

Query: 68  AAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
           A  N + +  L EA   G+ E    L          +     +    A     + VV+ L
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 128 I------NQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL-----EVRPRFAGKTDKNG 176
           +      +        +D     P++ A S GH ++A E+L      V        D   
Sbjct: 62  LQHGADVH-------AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVN-----VADLWK 108

Query: 177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR--VKILV 227
           F+PLH A++ G   + KLLL H  D   + N+DG TPL L          +L 
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKDGDTDIQDLLR 160

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 92.1 bits (230), Expect = 6e-22
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 19/164 (11%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH--NKD 201
             +  A   G  +  +++  V+       +    +PLH+A+    V++ + LL H  +  
Sbjct: 10  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69

Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
                +K G  PLH A   G  ++    L    A  +    +  T  H A    KY   K
Sbjct: 70  AK---DKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 125

Query: 262 FLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
            L       L HG     +++ GNT L L     +    + +  
Sbjct: 126 LL-------LQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 84.7 bits (211), Expect = 2e-19
 Identities = 35/152 (23%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
           +      L  A+  G+V   K L                TPLH AA   RV + V +L  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV-VEYLLQ 63

Query: 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAV 287
             A        G    H A  +  Y   + L       + HG      D +  T LH A 
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELL-------VKHGAVVNVADLWKFTPLHEAA 116

Query: 288 LRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
            +  Y+  + +++    D   +N    T LD+
Sbjct: 117 AKGKYEICKLLLQHGA-DPTKKNRDGNTPLDL 147

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  100 bits (252), Expect = 9e-25
 Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 15/175 (8%)

Query: 95  EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
           E N  + ++   E    + +  + GH          +     +  S   TP + A  +  
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA----ADVVSEYETPWWTAARKAD 56

Query: 155 TDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDG 210
                ++LE             D+NG + L + + +G+    +LL     DL  +  + G
Sbjct: 57  EQALSQLLE------DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110

Query: 211 YTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE 265
            T LH+AA   R ++ V  L    A  +     G T   LA    K        +
Sbjct: 111 LTALHMAAGYVRPEV-VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  100 bits (251), Expect = 1e-24
 Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 27/176 (15%)

Query: 66  LVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVK 125
           + +    +           G+             V      E ++ +  A R+     + 
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALS 61

Query: 126 LL-----INQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG-----KTDKN 175
            L     ++         D    T +      G     R + E     AG     +  + 
Sbjct: 62  QLLEDRDVD-------AVDENGRTALLFVAGLGSDKCVRLLAE-----AGADLDHRDMRG 109

Query: 176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
           G + LH A+      + + L+    D+ ++ ++ G T L LA    +       + 
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.2 bits (230), Expect = 8e-22
 Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 17/162 (10%)

Query: 42  TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME-ANPTV 100
               +  + GH             + A    + ETP   A  + + +  + L+E  +   
Sbjct: 16  MEYLIEWKDGHSPSW----VPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDA 71

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
               +   ++A       G    V+LL      ++  +     T +++A      ++   
Sbjct: 72  V---DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 161 ILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           ++E      G      D+ G + L  A  I         +  
Sbjct: 129 LVE-----LGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 21/161 (13%), Positives = 35/161 (21%), Gaps = 53/161 (32%)

Query: 163 EVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGR 222
           EV      +T   G          G+            D+      +  TP   AA    
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKAD 56

Query: 223 VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQ 277
            +                           +                  L         D+
Sbjct: 57  EQA--------------------------LSQ----------------LLEDRDVDAVDE 74

Query: 278 FGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKN-QTAL 317
            G T L       + + V  + +    D+  R+ +   TAL
Sbjct: 75  NGRTALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTAL 114

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  101 bits (254), Expect = 1e-24
 Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 24/219 (10%)

Query: 42  TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFLM 94
              +LA      EL         E            ++   T LH AC  G+ E+  FL+
Sbjct: 9   MICNLAYSGKLDELK--------ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 95  E--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISR 152
           +                S   +A   G  ++VK L+ +   +    +    TP++ A S+
Sbjct: 61  QLGVPVNDKDD---AGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASK 116

Query: 153 GHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYT 212
              +IA  +LE       K D    + +H A++ GN+ M  +LL +     +Q + +G T
Sbjct: 117 NRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNT 174

Query: 213 PLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA 251
           PLHLA    RV+    FL +  AS        +T   +A
Sbjct: 175 PLHLACDEERVEE-AKFLVTQGASIYIENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 99.2 bits (247), Expect = 1e-23
 Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 27/211 (12%)

Query: 32  ILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETP 77
            +L   +          TALH A   GH E+V        E        V  +++   +P
Sbjct: 25  RILADKSLATRTDQDSRTALHWACSAGHTEIV--------EFLLQLGVPVNDKDDAGWSP 76

Query: 78  LHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFE 137
           LH A   G  E+   L+     V    N    +    A  +   ++  +L+      +  
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPD-A 134

Query: 138 EDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN 197
           +D  ++T ++ A ++G+  +   +L  +     + D  G +PLH A     V   K L+ 
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVT 193

Query: 198 HNKDLALQYNKDGYTPLHLAAINGR-VKILV 227
               + ++ NK+  TPL +A      +   +
Sbjct: 194 QGASIYIE-NKEEKTPLQVAKGGLGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 94.5 bits (235), Expect = 5e-22
 Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 18/195 (9%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH- 198
               LA S    ++   IL            +TD++  + LH+A S G+  + + LL   
Sbjct: 9   MICNLAYSGKLDELKERILA-----DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63

Query: 199 -NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKY 257
              +     +  G++PLH+AA  G  +I V  L    A  + +   G T  H A   +++
Sbjct: 64  VPVNDK---DDAGWSPLHIAASAGXDEI-VKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 258 NAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
                L E         +D +  T +H A  + N + V  ++         ++ +  T L
Sbjct: 120 EIAVMLLE--GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPL 176

Query: 318 DIIEQAGTNDDATSL 332
            +       ++A  L
Sbjct: 177 HLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.5 bits (196), Expect = 6e-17
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 5/158 (3%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
           +     + A S     + + +L          ++D  T LH A   G  +I V FL    
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEI-VEFLLQLG 63

Query: 235 ASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQF 294
              +     G +  H+A         K L         +  +Q G T LH A  +  ++ 
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGXDEIVKALLV--KGAHVNAVNQNGCTPLHYAASKNRHEI 121

Query: 295 VEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL 332
              +++    +   ++H + TA+      G       L
Sbjct: 122 AVMLLEGGA-NPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 14/131 (10%)

Query: 207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES 266
                   +LA        L   + +  +   R      T  H A         +FL   
Sbjct: 4   CVSNIMICNLAYSGKL-DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL--- 59

Query: 267 FNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIE 321
               L  G     +D  G + LH+A      + V+ ++ +    +   N    T L    
Sbjct: 60  ----LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAA 114

Query: 322 QAGTNDDATSL 332
               ++ A  L
Sbjct: 115 SKNRHEIAVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 35  QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
            +D    TA+H AA  G++++V  +          + E   TPLH AC +   E + FL+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG-NTPLHLACDEERVEEAKFLV 192

Query: 95  EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ 130
               ++  + N E ++   +A  +G L ++   + +
Sbjct: 193 TQGASIYIE-NKEEKTPLQVA--KGGLGLILKRLAE 225

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (255), Expect = 2e-24
 Identities = 47/252 (18%), Positives = 79/252 (31%), Gaps = 52/252 (20%)

Query: 7   QNLSEAIVRNDKQALINLV--GCSNKRILL----QRDASLNTALHLAA---RFGHVELV- 56
             L   + R   + L  L+     N + L        ++  T L  A    + G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 57  -----TEITKLCPELVAA----ENEKLETPLHEACCQGNHEVSAFLME--AN-------- 97
                 + +     LV A    E  +  + LH A  + + +    L+E  A+        
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 98  --PTVATKLNHESQSAFSLACRQGHLDVVKLLI-NQSWLMEFEE-DSVESTPIYLAISRG 153
                     +  +   SLA      DVV  L+ N       E  DS+ +T ++  +   
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTP 213
                              +    S L      G + M   L    +   +  N  G TP
Sbjct: 184 D------------------NSPENSALVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTP 224

Query: 214 LHLAAINGRVKI 225
           L LAA  G+++I
Sbjct: 225 LKLAAKEGKIEI 236

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 98.7 bits (246), Expect = 2e-23
 Identities = 43/295 (14%), Positives = 77/295 (26%), Gaps = 66/295 (22%)

Query: 42  TALHLAARFGHVELVTEI-------TKLCPELVAAENEKLETPLHEA---CCQGNHEVSA 91
             L      G  E +T +       +K   +    E    +T L +A      G +    
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 92  FLMEANPTVATKL----------NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSV 141
            L++ +                  ++  SA  +A  +  L  VKLL+             
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV------------- 110

Query: 142 ESTPIYLAISRGHTDI-AREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK 200
                      G  D+  R       +  G     G  PL  A+     ++   LL +  
Sbjct: 111 ---------ENG-ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160

Query: 201 DLAL--QYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYN 258
             A     +  G T LH   +                      +   +   + +      
Sbjct: 161 QPASLEATDSLGNTVLHALVMIAD------------------NSPENSALVIHMYDGLLQ 202

Query: 259 AFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKN 313
               L       L    +  G T L LA      +   +I++         +H +
Sbjct: 203 MGARLCP--TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.8 bits (197), Expect = 7e-17
 Identities = 43/223 (19%), Positives = 64/223 (28%), Gaps = 50/223 (22%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG-------KTDKNGFSPLHYA---SSIGNVNMTK 193
             ++  +SRG  +    +LE     +             G + L  A      G      
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 194 LLLNHNKDLALQY----------NKDGYTPLHLAAINGR---VKILV---------AFLS 231
            LL  +KD                  G++ LH+A        VK+LV         A   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE-SFNTCLFHGQDQFGNTVLHLAVLRK 290
                      +GE    LA    +++   +L E           D  GNTVLH  V+  
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 291 N----------------YQFVEYIIKETVLDIYCRNHKNQTAL 317
           +                 Q    +   TV      NH+  T L
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLC-PTVQLEEISNHQGLTPL 225

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME 95
            ++  N+AL +    G +++   +      L    N +  TPL  A  +G  E+   +++
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCPTVQ-LEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242

Query: 96  ANPTVATKLNH 106
              + A   +H
Sbjct: 243 REFSGAAAHHH 253

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 98.2 bits (246), Expect = 4e-24
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 33/173 (19%)

Query: 71  NEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI-- 128
            E     L  A  +G+ E    L++ N  V  + N   ++A  +  + G+ ++ + L+  
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVM-KLGNPEIARRLLLR 59

Query: 129 ----NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPL 180
               +        +D      I+ A   G  D  + +LE             D  G  PL
Sbjct: 60  GANPD-------LKDRTGFAVIHDAARAGFLDTLQTLLEF-----QADVNIEDNEGNLPL 107

Query: 181 HYASSIGNVNMTKLLLNH---NKDLALQYNKDGYTPLHLAAINGR---VKILV 227
           H A+  G++ + + L+ H   N       N  G T   LA + GR   V ++ 
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHR---NHKGDTACDLARLYGRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 92.8 bits (232), Expect = 3e-22
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 34/173 (19%)

Query: 41  NTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFL 93
              L  AA  G +E +                 V A+N    T L      GN E++  L
Sbjct: 6   GNELASAAARGDLEQL--------TSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRL 56

Query: 94  ME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFEEDSVESTP 145
           +   ANP +  +      +    A R G LD ++ L+      N        ED+  + P
Sbjct: 57  LLRGANPDLKDR---TGFAVIHDAARAGFLDTLQTLLEFQADVN-------IEDNEGNLP 106

Query: 146 IYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           ++LA   GH  +   +++      G  +  G +    A   G   +  L+  +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 88.2 bits (220), Expect = 1e-20
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 29/169 (17%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH- 198
             +  A +RG  +    +L+             +  G + L     +GN  + + LL   
Sbjct: 7   NELASAAARGDLEQLTSLLQN-----NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG 60

Query: 199 -NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKY 257
            N DL    ++ G+  +H AA  G +   +  L    A  +     G    HLA +    
Sbjct: 61  ANPDLK---DRTGFAVIHDAARAGFLDT-LQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116

Query: 258 NAFKFLAESFNTCLFHG------QDQFGNTVLHLAVLRKNYQFVEYIIK 300
              +FL       + H       ++  G+T   LA L    + V  +  
Sbjct: 117 RVVEFL-------VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 79.7 bits (198), Expect = 1e-17
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
              + L  A++ G++     LL +  N +     N  G T L +    G  +I    L  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQ---NGFGRTALQVMK-LGNPEI-ARRLLL 58

Query: 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAV 287
             A+ D     G  V H A R    +  + L       L        +D  GN  LHLA 
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTL-------LEFQADVNIEDNEGNLPLHLAA 111

Query: 288 LRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
              + + VE+++K T  ++  RNHK  TA D+
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  100 bits (250), Expect = 8e-24
 Identities = 44/250 (17%), Positives = 74/250 (29%), Gaps = 45/250 (18%)

Query: 110 SAFSLACRQGHLDVVKLLINQSWLM---EFEEDSVESTPIYLA---ISRGHTDIAREILE 163
              S     G   ++  L+     +   EF E S   T +  A   +S G  D    +L+
Sbjct: 11  DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70

Query: 164 VRPRFAGKT----------DKNGFSPLHYASSIGNVNMTKLLLNH-------------NK 200
           +  +                  G + LH A      +  +LL+                 
Sbjct: 71  IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 201 DLALQYNKDGYTPLHLAAINGRVKILVAFLS--SSPASFDRLTTYGETVFHLAVRFDKYN 258
                Y   G  PL LAA   +  I+          A   R  + G TV H  V      
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190

Query: 259 --AFKFLAESFNTCLFHG------------QDQFGNTVLHLAVLRKNYQFVEYIIKETVL 304
               KF+ + ++  L                +  G + L +A         ++II+  + 
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

Query: 305 DIYCRNHKNQ 314
           D    +H + 
Sbjct: 251 DAAAHHHHHH 260

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 96.0 bits (239), Expect = 3e-22
 Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 50/234 (21%)

Query: 42  TALHLAARFGHVELVTEITKLCPELVAAENEKL-------ETPLHEA---CCQGNHEVSA 91
             L      G  + +  +            ++        +T L +A      G ++   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 92  FLMEANPTVA----------TKLNHESQSAFSLACRQGHLDVVKLLI----------NQS 131
            L++                  + +  Q+A  +A  +     V+LL+             
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 132 WLMEFEEDSVES---TPIYLAISRGHTDIAREILEVRPRFA--GKTDKNGFSPLHYASSI 186
           +    +E         P+ LA       I   + E   + A   + D  G + LH   +I
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186

Query: 187 GN---------VNMTKLLL------NHNKDLALQYNKDGYTPLHLAAINGRVKI 225
            +           M  LLL        + +L    N DG +PL +AA  G++ I
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 85.2 bits (211), Expect = 1e-18
 Identities = 35/244 (14%), Positives = 66/244 (27%), Gaps = 59/244 (24%)

Query: 9   LSEAIVRNDKQALINLVGCSNKRILLQRDASLN-----------TALHLAA---RFGHVE 54
           L + + R     L  L+       LL     L            T L  A      G  +
Sbjct: 9   LFDIVSRGSPDGLEGLL-----SFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63

Query: 55  LVT----------EITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME--AN----- 97
            +            + +           + +T LH A  +        L+E  A+     
Sbjct: 64  TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

Query: 98  ------PTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME--FEEDSVESTPIYLA 149
                 P       +  +   SLA       +V  L            +DS  +T ++  
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 150 ISRGH---------TDIAREILEV------RPRFAGKTDKNGFSPLHYASSIGNVNMTKL 194
           ++            T +   +L                + +G SPL  A+  G + + + 
Sbjct: 184 VAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243

Query: 195 LLNH 198
           ++  
Sbjct: 244 IIRR 247

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.4 bits (241), Expect = 1e-23
 Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 21/159 (13%)

Query: 69  AENEKLETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
           +  E     L  A  +G  E    L+E  ANP      N   +    +    G   V +L
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAP---NSYGRRPIQVMMM-GSARVAEL 62

Query: 127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHY 182
           L+         + +  + P++ A   G  D    +       AG      D  G  P+  
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-----AGARLDVRDAWGRLPVDL 117

Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
           A  +G+ ++ + L              G     + A  G
Sbjct: 118 AEELGHRDVARYLRAAAGG------TRGSNHARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 75.2 bits (186), Expect = 3e-16
 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 33/144 (22%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELV-------AAENEKLET 76
           R LL+  A+ N         + +    G       + +L   L+        A+   L  
Sbjct: 29  RALLEAGANPNAPNSYGRRPIQVMMM-GS----ARVAEL---LLLHGAEPNCADPATLTR 80

Query: 77  PLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM 134
           P+H+A  +G  +    L    A   V        +    LA   GH DV + L       
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGARLDVRDA---WGRLPVDLAEELGHRDVARYLRAA---- 133

Query: 135 EFEEDSVESTPIYLAISRGHTDIA 158
                +  S    +  + G +DI 
Sbjct: 134 --AGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 75.2 bits (186), Expect = 4e-16
 Identities = 28/156 (17%), Positives = 46/156 (29%), Gaps = 17/156 (10%)

Query: 169 AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA 228
           AG + +     L  A++ G V   + LL    +     N  G  P+ +    G  ++   
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARV-AE 61

Query: 229 FLSSSPASFDRLTTYGETV-FHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTV 282
            L    A  +       T   H A R    +    L          G     +D +G   
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL-------HRAGARLDVRDAWGRLP 114

Query: 283 LHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALD 318
           + LA    +     Y+           NH    A +
Sbjct: 115 VDLAEELGHRDVARYLRAAAG-GTRGSNHARIDAAE 149

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 98.1 bits (244), Expect = 3e-22
 Identities = 53/354 (14%), Positives = 96/354 (27%), Gaps = 56/354 (15%)

Query: 10  SEAIVRNDKQALINLVGCSNK---RILLQRDASL-NTALHLAARFGHVELVTEITKLCPE 65
                       ++L+  S K    I L    ++      L   + H        K    
Sbjct: 27  ENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNA---KQLWS 83

Query: 66  LVAAENEKLETPLHEAC---CQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLD 122
               +  K E     A    C    +    L+ ++  V      E+  AF LA   GHL 
Sbjct: 84  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLH 142

Query: 123 VVKLLINQSWLMEFEEDSVE-STPIYLAISRGHTDIAREILEVRPRFAGKT-DKNGFSPL 180
           V+  L   +          E      LA   GH  +   + E+ P  A        +   
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 202

Query: 181 HYASSI-GNVNMTKLLLNHNKDLA---------------------LQYNKDGYTPLHLAA 218
            +A+   G+ N+   LL+    LA                     +   K+ +    L+ 
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262

Query: 219 INGRVKILVAFLSSSPASFDRLTTYGETVFHLAVR---FDKYNAFKFLAESFNT---CLF 272
            +G   ++                 G  +    +R       +  +FL            
Sbjct: 263 PDGVFDLVTKSECLQ----------GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT 312

Query: 273 HGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNH-----KNQTALDIIE 321
                  N +L LA+   N      ++    +    + +     +    LD+  
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRA 366

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 97.7 bits (243), Expect = 4e-22
 Identities = 39/218 (17%), Positives = 60/218 (27%), Gaps = 40/218 (18%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAE-NEKLETPLHEACCQGNH-EVSAFLMEANP 98
             A  LAA  GH+ ++  + +L P    A    +       A     H  V  FL++   
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQS-------------------WLMEFEED 139
            +A    H            G   V   +                        L+   E 
Sbjct: 224 MLAYAEIH--------EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC 275

Query: 140 SVESTPIYLAISRGHT---DIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMT 192
                 +   I R      D  R +L +    A         +    L  A  +GN    
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 335

Query: 193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
            LLL+    LAL          ++    GR+ +    L
Sbjct: 336 ALLLSIPSVLALTKA----NNYYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 26/176 (14%)

Query: 31  RILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVS 90
             LL     L  A      +G   +   I            +++      +   G  ++ 
Sbjct: 216 NFLLDCPVMLAYAEIHEFEYGEKYVNPFI-----ARHVNRLKEMHDAFKLSNPDGVFDL- 269

Query: 91  AFLMEANPTVATKLNHESQSAFSLACRQGH---LDVVKLLINQSWLMEF----EEDSVES 143
                    V      +         R+     LD ++ L++   +             +
Sbjct: 270 ---------VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 320

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
             + LA+  G+      +L + P     T  N +   +   + G +++  + L H+
Sbjct: 321 ELLRLALRLGNQGACALLLSI-PSVLALTKANNY---YINETGGRLDLRAVALEHH 372

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 91.3 bits (228), Expect = 4e-22
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 114 LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG--- 170
           +A  +G +  V+ L+         +D    TP++ A + GH  +   +L+          
Sbjct: 16  IASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQ-----HKALV 69

Query: 171 -KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL 226
             T     SPLH A+  G+V++ KLLL++        N  G  P+          +L
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 87.9 bits (219), Expect = 8e-21
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAF 229
           T+  G + LH AS  G++   + LL +  + ++    +  G+TPLH A  +G +K+ V  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKV-VEL 61

Query: 230 LSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLH 284
           L    A  +      ++  H A +    +  K L       L +G      + FG   + 
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL-------LSYGASRNAVNIFGLRPVD 114

Query: 285 LAVLRKNYQFVEYIIK 300
                     +    K
Sbjct: 115 YTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 81.3 bits (202), Expect = 2e-18
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 69  AENEKLETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKL 126
             N + ET LH A  +G+     +L++  ++P V    +H   +    AC  GHL VV+L
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVVEL 61

Query: 127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHY 182
           L+    L+         +P++ A   GH DI + +L       G      +  G  P+ Y
Sbjct: 62  LLQHKALVN-TTGYQNDSPLHDAAKNGHVDIVKLLLSY-----GASRNAVNIFGLRPVDY 115

Query: 183 ASSIGNVNMTKLLLNH 198
                  ++  L   +
Sbjct: 116 TDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 67.4 bits (166), Expect = 1e-13
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 27/115 (23%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLET 76
             LLQ  +  N       T LH A   GH+++V        EL       V     + ++
Sbjct: 27  EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV--------ELLLQHKALVNTTGYQNDS 78

Query: 77  PLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129
           PLH+A   G+ ++   L+   A+                    +    ++ L   
Sbjct: 79  PLHDAAKNGHVDIVKLLLSYGASRNAVNI---FGLRPVDYTDDESMKSLLLLPEK 130

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 90.5 bits (226), Expect = 7e-22
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 15/130 (11%)

Query: 103 KLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREIL 162
            L       F  A + G LD VK  + +   +          P++ A   G  +I   +L
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 163 EVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHL 216
                  G      DK+  +PL  A   G+V+  KLLL+   +K +      DG T    
Sbjct: 61  LK-----GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK---GPDGLTAFEA 112

Query: 217 AAINGRVKIL 226
                   +L
Sbjct: 113 TDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 83.2 bits (207), Expect = 2e-19
 Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 15/115 (13%)

Query: 143 STPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH 198
                 A+  G  D  ++ +       G    +T + G  PLHYA+  G + + + LL  
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAK-----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 199 --NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA 251
             + +     +K   TPL  A   G V   V  L S  A        G T F   
Sbjct: 63  GADINAP---DKHHITPLLSAVYEGHVSC-VKLLLSKGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.0 bits (183), Expect = 5e-16
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 18/124 (14%)

Query: 170 GKTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILV 227
           G           +A   G+++  K  +    + +      + G  PLH AA  G+++I +
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT---LEGGRKPLHYAADCGQLEI-L 56

Query: 228 AFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTV 282
            FL    A  +    +  T    AV     +  K L       L  G     +   G T 
Sbjct: 57  EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL-------LSKGADKTVKGPDGLTA 109

Query: 283 LHLA 286
               
Sbjct: 110 FEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 59.3 bits (145), Expect = 6e-11
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 25/110 (22%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVA------AENEKLETP 77
           +  + +   +N         LH AA  G +E    I +    L+       A ++   TP
Sbjct: 24  KDYVAKGEDVNRTLEGGRKPLHYAADCGQLE----ILEF---LLLKGADINAPDKHHITP 76

Query: 78  LHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVK 125
           L  A  +G+      L+   A+ TV      +  +AF     Q    +++
Sbjct: 77  LLSAVYEGHVSCVKLLLSKGADKTVKGP---DGLTAFEATDNQAIKALLQ 123

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.1 bits (225), Expect = 2e-21
 Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 17/159 (10%)

Query: 111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG 170
               A R G  D V++L+       F  D + ++P++LA   GH      +L      AG
Sbjct: 5   KLLEAARAGQDDEVRILMANG--APFTTDWLGTSPLHLAAQYGHFSTTEVLLR-----AG 57

Query: 171 ----KTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVK 224
                  K   +PLH A+S G+ N+ ++LL H  + +     +    T LH A  +   +
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK---DMLKMTALHWATEHNHQE 114

Query: 225 ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
           + V  L    A     + + +T F +++     +  + L
Sbjct: 115 V-VELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.1 bits (225), Expect = 2e-21
 Identities = 40/161 (24%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH--NKD 201
             +  A   G  D  R ++     F   TD  G SPLH A+  G+ + T++LL    ++D
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
                 K   TPLH+AA  G   I V  L    A  +       T  H A   +     +
Sbjct: 62  AR---TKVDRTPLHMAASEGHANI-VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 262 FLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEY 297
            L       + +G     Q +F  T   +++   N    E 
Sbjct: 118 LL-------IKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 43/175 (24%)

Query: 40  LNTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAF 92
           L   L  AAR G  + V         +          +     +PLH A   G+   +  
Sbjct: 2   LGKKLLEAARAGQDDEV--------RILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEV 52

Query: 93  LME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI------NQSWLMEFEEDSVEST 144
           L+    +    TK     ++   +A  +GH ++V++L+      N        +D ++ T
Sbjct: 53  LLRAGVSRDARTK---VDRTPLHMAASEGHANIVEVLLKHGADVN-------AKDMLKMT 102

Query: 145 PIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLL 195
            ++ A    H ++   +++      G       K   +    +   GN ++ ++L
Sbjct: 103 ALHWATEHNHQEVVELLIKY-----GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 84.7 bits (211), Expect = 1e-19
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 24/154 (15%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNH----NKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
           +    L  A+  G  +  ++L+ +      D        G +PLHLAA  G        L
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTD------WLGTSPLHLAAQYGHFST-TEVL 53

Query: 231 SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHL 285
             +  S D  T    T  H+A      N  + L       L HG     +D    T LH 
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVL-------LKHGADVNAKDMLKMTALHW 106

Query: 286 AVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
           A    + + VE +IK    D++ ++   +TA DI
Sbjct: 107 ATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDI 139

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 89.0 bits (222), Expect = 3e-21
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 16/132 (12%)

Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
              S +  + A  +G ++ V+ L+          +     PI +    G   +A  +L  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVM-MMGSAQVAELLLL- 65

Query: 165 RPRFAG----KTDKNGF-SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAI 219
                G      D      P+H A+  G ++   +L      L +  +  G  P+ LA  
Sbjct: 66  ----HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEE 120

Query: 220 NGR---VKILVA 228
            G     + L A
Sbjct: 121 QGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 81.7 bits (203), Expect = 1e-18
 Identities = 30/172 (17%), Positives = 45/172 (26%), Gaps = 55/172 (31%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHE 88
              S +  L  AA  G VE V                   A N     P+      G+ +
Sbjct: 8   LGGSSDAGLATAAARGQVETV--------RQLLEAGADPNALNRFGRRPIQVMM-MGSAQ 58

Query: 89  VSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPI 146
           V+  L+   A P  A             A R+G LD + +L                   
Sbjct: 59  VAELLLLHGAEPNCAD--PATLTRPVHDAAREGFLDTLVVLH------------------ 98

Query: 147 YLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
                 G   +               D  G  P+  A   G+ ++ + L   
Sbjct: 99  ----RAG-ARL------------DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 77.9 bits (193), Expect = 3e-17
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 17/124 (13%)

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMT 192
                    +  A +RG  +  R++LE     AG      ++ G  P+      G+  + 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLE-----AGADPNALNRFGRRPIQVMMM-GSAQVA 60

Query: 193 KLLLNH--NKDLALQYNKDGYT-PLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH 249
           +LLL H    + A   +    T P+H AA  G +   +  L  + A  D    +G     
Sbjct: 61  ELLLLHGAEPNCA---DPATLTRPVHDAAREGFLDT-LVVLHRAGARLDVCDAWGRLPVD 116

Query: 250 LAVR 253
           LA  
Sbjct: 117 LAEE 120

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 67.5 bits (166), Expect = 1e-13
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELV-------AAENEKLET 76
           R LL+  A  N         + +    G      ++ +L   L+        A+   L  
Sbjct: 29  RQLLEAGADPNALNRFGRRPIQVMMM-GS----AQVAEL---LLLHGAEPNCADPATLTR 80

Query: 77  PLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ 130
           P+H+A  +G  +    L    A   V        +    LA  QGH D+ + L   
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGARLDVCDA---WGRLPVDLAEEQGHRDIARYLHAA 133

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 91.2 bits (226), Expect = 4e-20
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 33/238 (13%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCP 64
             Q        +  Q + +    +   + +  D   NT LH      ++ELV        
Sbjct: 96  SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELV-------- 147

Query: 65  EL-------VAAENEKLETPLHEACCQGNH----EVSAFLMEANPTVATK-------LNH 106
           +            +   E+ L +A    N+       A L    P +  +       L+H
Sbjct: 148 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH 207

Query: 107 ESQSAFS---LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE 163
              ++      A  + +LD++   I +      +  + E        +    D   E L+
Sbjct: 208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 267

Query: 164 VRPRFAG---KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAA 218
           ++   A      D NG + L+ A+ +GN+++   LL++  D  +  NK G  P+   A
Sbjct: 268 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA-NKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 90.1 bits (223), Expect = 9e-20
 Identities = 38/302 (12%), Positives = 82/302 (27%), Gaps = 52/302 (17%)

Query: 35  QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
           ++   L   L         E+ T +        +      +   H +      EV+    
Sbjct: 58  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP 117

Query: 95  EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
                +   ++    +         +L++VK L                      +  G 
Sbjct: 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL----------------------VKHG- 154

Query: 155 TDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK---LLLNHNKDLALQYNKDGY 211
           ++                D  G S L  A    N   +     LL++     +  +    
Sbjct: 155 SNRLY------------GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR 202

Query: 212 TPLHLAAINGRVK-----------ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF 260
           T LH   I   +            IL+ ++        +  T  +         ++ ++ 
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262

Query: 261 KFLAES--FNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALD 318
               +       + + QD  G+T L++A    N   V+ ++     D +  N      +D
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA-DPFIANKSGLRPVD 321

Query: 319 II 320
             
Sbjct: 322 FG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 73.1 bits (179), Expect = 3e-14
 Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 13/230 (5%)

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL 196
           E+       +   +     ++   +         +   +     H +       +     
Sbjct: 58  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP 117

Query: 197 NHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD- 255
           N   +L +  ++ G TPLH       +++ V  L    ++       GE+    AV+   
Sbjct: 118 NTQLNLNIPVDEHGNTPLHWLTSIANLEL-VKHLVKHGSNRLYGDNMGESCLVKAVKSVN 176

Query: 256 --KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKN 313
                 F+ L +    CL   +D    T+LH  ++                         
Sbjct: 177 NYDSGTFEALLDYLYPCLIL-EDSMNRTILHHIIITSG--------MTGCSAAAKYYLDI 227

Query: 314 QTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPIN 363
                + +Q       T+ K+      N    +      ++K  + + +N
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 85.5 bits (212), Expect = 2e-19
 Identities = 23/173 (13%), Positives = 47/173 (27%), Gaps = 17/173 (9%)

Query: 142 ESTPIYLAISRGHTDIAREILE----VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN 197
           E   +  A   G  +   E+ E     +           +  L   +      ++  L+N
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNI--LYDVLRNNNDEARYKISMFLIN 63

Query: 198 HNKDLALQYNKDGYTPLHLAAINGRVKI-----LVAFLSSSPASFDRLTTYGETVFHLAV 252
              D+  +  K+G T        G   I     L        A    L    + V    +
Sbjct: 64  KGADIKSR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

Query: 253 RFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
                +  + +          G     +D++G T L      +    ++ +  
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 85.1 bits (211), Expect = 3e-19
 Identities = 20/177 (11%), Positives = 40/177 (22%), Gaps = 35/177 (19%)

Query: 76  TPLHEACCQGNHEVSAFLMEANPTVATKLNHES--QSAFSLACRQGHLDVVKLLI----- 128
             +  A   G +E    L E        +   +           +    +   LI     
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 129 -NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRF---AG----KTDKNGFSPL 180
                          +T  +     G  DI       +       G       K     +
Sbjct: 68  IK-------SRTKEGTTLFFPLFQGGGNDITGTTELCK--IFLEKGADITALYKPYKIVV 118

Query: 181 HYASSIGNVNMTK-------LLLNHNKDLALQYNKDGYTPLHLAAINGR---VKILV 227
                   V+  +       +       L ++ +K G T L       +   +K++ 
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK-DKWGLTALEFVKRCQKPIALKMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 83.6 bits (207), Expect = 9e-19
 Identities = 30/177 (16%), Positives = 53/177 (29%), Gaps = 20/177 (11%)

Query: 42  TALHLAARFGHVELVTEITKLCPELVAAENEK---LETPLHEACCQGNHEVSAFLME--A 96
             +  AA  G  E   E+ +   E       K   L   L     +  +++S FL+   A
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 97  NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF-----EEDSVESTPIYLAIS 151
           +    TK   E  + F    + G  D+          +E               ++  I 
Sbjct: 67  DIKSRTK---EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123

Query: 152 RGHTDIAREILEVRPRFAGK------TDKNGFSPLHYASSIGNVNMTKLLLNHNKDL 202
               D    I   +  F+         DK G + L +          K++ ++ K  
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 82.0 bits (203), Expect = 3e-18
 Identities = 26/177 (14%), Positives = 47/177 (26%), Gaps = 28/177 (15%)

Query: 109 QSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISR----GHTDIAREILEV 164
               S A   G  +    L  +    E +E  ++S  +Y  +          I+  ++  
Sbjct: 7   YRTVSAAAMLGTYEDFLELFEK--GYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN- 63

Query: 165 RPRFAG----KTDKNGFSPLHYASSIGNVN------MTKLLLNHNKDLALQYNKDGYTPL 214
                G       K G +        G  +      + K+ L    D+     K     +
Sbjct: 64  ----KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVV 118

Query: 215 HLAAING------RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE 265
                N        + +     S S         +G T      R  K  A K + +
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 78.9 bits (195), Expect = 4e-17
 Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 15/167 (8%)

Query: 174 KNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD--GYTPLHLAAINGRVKILVAFLS 231
            + +  +  A+ +G       L     +      K    Y  L       R KI   FL 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKI-SMFLI 62

Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLA 286
           +  A     T  G T+F    +    +      E     L  G       +    V+   
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTT-ELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 287 VLRKNY------QFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND 327
           +              + I  ++ L +  ++    TAL+ +++     
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 13/120 (10%), Positives = 35/120 (29%), Gaps = 22/120 (18%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL------VAAENEKLETP 77
             L+ + A +        T      + G  + +T  T+LC         + A  +  +  
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGND-ITGTTELCKIFLEKGADITALYKPYKIV 117

Query: 78  LHEACCQGNHE-------VSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ 130
           + +       +             ++   +  K +    +A     R      +K++ + 
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK-DKWGLTALEFVKRCQKPIALKMMEDY 176

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 82.4 bits (205), Expect = 6e-19
 Identities = 58/199 (29%), Positives = 78/199 (39%), Gaps = 92/199 (46%)

Query: 41  NTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFL 93
            T LHLAAR GH+E+V        +L       V A+++   TPLH              
Sbjct: 3   RTPLHLAARNGHLEVV--------KLLLEAGADVNAKDKNGRTPLH-------------- 40

Query: 94  MEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
                               LA R GHL+VVKLL                      +  G
Sbjct: 41  --------------------LAARNGHLEVVKLL----------------------LEAG 58

Query: 154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGY 211
             D+               DKNG +PLH A+  G++ + KLLL    + +     +K+G 
Sbjct: 59  -ADV------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK---DKNGR 102

Query: 212 TPLHLAAINGR---VKILV 227
           TPLHLAA NG    VK+L+
Sbjct: 103 TPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 81.6 bits (203), Expect = 1e-18
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 15/130 (11%)

Query: 75  ETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSW 132
            TPLH A   G+ EV   L+E  A+     K     ++   LA R GHL+VVKLL+    
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDK---NGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 133 LMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGN 188
            +   +D    TP++LA   GH ++ + +LE      G      DKNG +PLH A+  G+
Sbjct: 60  DVN-AKDKNGRTPLHLAARNGHLEVVKLLLEA-----GADVNAKDKNGRTPLHLAARNGH 113

Query: 189 VNMTKLLLNH 198
           + + KLLL  
Sbjct: 114 LEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 81.2 bits (202), Expect = 1e-18
 Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 15/126 (11%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH- 198
           TP++LA   GH ++ + +LE     AG      DKNG +PLH A+  G++ + KLLL   
Sbjct: 4   TPLHLAARNGHLEVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 199 -NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKY 257
            + +     +K+G TPLHLAA NG +++ V  L  + A  +     G T  HLA R    
Sbjct: 59  ADVNAK---DKNGRTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114

Query: 258 NAFKFL 263
              K L
Sbjct: 115 EVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 79.3 bits (197), Expect = 5e-18
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 18/133 (13%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
           NG +PLH A+  G++ + KLLL    + +     +K+G TPLHLAA NG +++ V  L  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK---DKNGRTPLHLAARNGHLEV-VKLLLE 56

Query: 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAV 287
           + A  +     G T  HLA R       K L       L  G     +D+ G T LHLA 
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL-------LEAGADVNAKDKNGRTPLHLAA 109

Query: 288 LRKNYQFVEYIIK 300
              + + V+ +++
Sbjct: 110 RNGHLEVVKLLLE 122

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG---- 170
                H      L+ +        D      +  A   G  D  R ++       G    
Sbjct: 1   GSSHHHHHHSSGLVPRG--SHMGSDL--GKKLLEAARAGQDDEVRILMA-----NGADVA 51

Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL 226
             DKNG +PLH A+  G++ + KLLL    D+  Q +K G T   ++  NG   + 
Sbjct: 52  AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLA 106

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 31  RILLQRDASLN----TALHLAARFGHVELVTEITKLCPELVA------AENEKLETPLHE 80
             L+ R + +       L  AAR G      +  ++   L+A      A+++   TPLH 
Sbjct: 11  SGLVPRGSHMGSDLGKKLLEAARAGQ----DDEVRI---LMANGADVAAKDKNGSTPLHL 63

Query: 81  ACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
           A   G+ EV   L+EA   V  + +   ++AF ++   G+ D+ ++L
Sbjct: 64  AARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 51/156 (32%)

Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
            SS  + + +  L+     +      D    L  AA  G+                    
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQD------------------- 37

Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEY 297
             + V             + L       + +G     +D+ G+T LHLA    + + V+ 
Sbjct: 38  --DEV-------------RIL-------MANGADVAAKDKNGSTPLHLAARNGHLEVVKL 75

Query: 298 IIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLK 333
           +++    D+  ++   +TA DI    G  D A  L+
Sbjct: 76  LLEAGA-DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.4 bits (192), Expect = 2e-17
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH- 198
           TP++ A   GH +  +++L       G       K+G +PLH A+  G+  + KLLL   
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSK-----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 199 -NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH 249
            + +     +KDG TP HLA  NG  +I V  L +  A  +  +       H
Sbjct: 66  ADVNAR---SKDGNTPEHLAKKNGHHEI-VKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 76.3 bits (189), Expect = 5e-17
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 18/119 (15%)

Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
            K+G +PLH A+  G+    K LL+   + +     +KDG TPLHLAA NG  +I V  L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR---SKDGNTPLHLAAKNGHAEI-VKLL 61

Query: 231 SSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLH 284
            +  A  +  +  G T  HLA +   +   K L          G     +    +   H
Sbjct: 62  LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL-------DAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.5 bits (174), Expect = 5e-15
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 45/145 (31%)

Query: 75  ETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSW 132
            TPLH A   G+ E    L+   A+    +K   +  +   LA + GH ++VKLL     
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADVNARSK---DGNTPLHLAAKNGHAEIVKLL----- 61

Query: 133 LMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT 192
                            +++G  D+                K+G +P H A   G+  + 
Sbjct: 62  -----------------LAKG-ADV------------NARSKDGNTPEHLAKKNGHHEIV 91

Query: 193 KLLLNH--NKDLALQYNKDGYTPLH 215
           KLL     + +     +       H
Sbjct: 92  KLLDAKGADVNAR---SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 14/120 (11%)

Query: 203 ALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKF 262
            +  +KDG TPLH AA NG  +  V  L S  A  +  +  G T  HLA +       K 
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEE-VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 263 LAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
           L       L  G     + + GNT  HLA    +++ V+ +  +   D+  R+  +    
Sbjct: 61  L-------LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-DVNARSWGSSHHH 112

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.5 bits (187), Expect = 5e-17
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 17/93 (18%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH- 198
           TP++LA   GH ++ + +LE      G      DKNG +PLH A+  G++ + KLLL   
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA-----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 199 -NKDLALQYNKDGYTPLHLAAINGR---VKILV 227
            + +     +K+G TPLHLAA NG    VK+L+
Sbjct: 59  ADVNAK---DKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 67.0 bits (165), Expect = 5e-14
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
           NG +PLH A+  G++ + KLLL    + +     +K+G TPLHLAA NG +++ V  L  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK---DKNGRTPLHLAARNGHLEV-VKLLLE 56

Query: 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
           + A  +     G T  HLA R       K L
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.5 bits (161), Expect = 2e-13
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 114 LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG--- 170
           LA R GHL+VVKLL+     +   +D    TP++LA   GH ++ + +LE      G   
Sbjct: 8   LAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEA-----GADV 61

Query: 171 -KTDKNGFSPLHYASSIGNVNMTKLLLNH 198
              DKNG +PLH A+  G++ + KLLL  
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.1 bits (155), Expect = 1e-12
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 20/99 (20%)

Query: 41  NTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFL 93
            T LHLAAR GH+E+V        +L       V A+++   TPLH A   G+ EV   L
Sbjct: 3   RTPLHLAARNGHLEVV--------KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 94  ME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ 130
           +E  A+     K     ++   LA R GHL+VVKLL+  
Sbjct: 55  LEAGADVNAKDK---NGRTPLHLAARNGHLEVVKLLLEA 90

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 75.1 bits (186), Expect = 3e-16
 Identities = 43/205 (20%), Positives = 67/205 (32%), Gaps = 88/205 (42%)

Query: 32  ILLQRDASLNTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQ 84
                 + L   L  AAR G  + V         +       V A++E   TPL+     
Sbjct: 6   HHHHHGSDLGKKLLEAARAGQDDEV--------RILMANGADVNAKDEYGLTPLY----- 52

Query: 85  GNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVEST 144
                                        LA   GHL++V++L                 
Sbjct: 53  -----------------------------LATAHGHLEIVEVL----------------- 66

Query: 145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL 204
                +  G  D+               D  GF+PLH A+ IG++ + ++LL H  D+  
Sbjct: 67  -----LKNG-ADV------------NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108

Query: 205 QYNKDGYTPLHLAAINGR---VKIL 226
           Q +K G T   ++  NG     +IL
Sbjct: 109 Q-DKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.3 bits (184), Expect = 5e-16
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS 232
           +    L  A+  G  +  ++L+ +  + +     ++ G TPL+LA  +G ++I V  L  
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAK---DEYGLTPLYLATAHGHLEI-VEVLLK 68

Query: 233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAV 287
           + A  + +   G T  HLA         + L       L HG     QD+FG T   +++
Sbjct: 69  NGADVNAVDAIGFTPLHLAAFIGHLEIAEVL-------LKHGADVNAQDKFGKTAFDISI 121

Query: 288 LRKNYQFVEYIIK 300
              N    E + K
Sbjct: 122 GNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 73.6 bits (182), Expect = 7e-16
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNH- 198
             +  A   G  D  R ++       G      D+ G +PL+ A++ G++ + ++LL + 
Sbjct: 16  KKLLEAARAGQDDEVRILMAN-----GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70

Query: 199 -NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKY 257
            + +     +  G+TPLHLAA  G ++I    L    A  +    +G+T F +++     
Sbjct: 71  ADVNAV---DAIGFTPLHLAAFIGHLEI-AEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126

Query: 258 NAFKFL 263
           +  + L
Sbjct: 127 DLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 14/124 (11%)

Query: 201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF 260
                +  D    L  AA  G+    V  L ++ A  +    YG T  +LA         
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDE-VRILMANGADVNAKDEYGLTPLYLATAHGHLEIV 63

Query: 261 KFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT 315
           + L       L +G      D  G T LHLA    + +  E ++K    D+  ++   +T
Sbjct: 64  EVL-------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNAQDKFGKT 115

Query: 316 ALDI 319
           A DI
Sbjct: 116 AFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 22/80 (27%)

Query: 32  ILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETP 77
           +LL+  A +N       T LHLAA  GH+E+         E+       V A+++  +T 
Sbjct: 65  VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIA--------EVLLKHGADVNAQDKFGKTA 116

Query: 78  LHEACCQGNHEVSAFLMEAN 97
              +   GN +++  L + N
Sbjct: 117 FDISIGNGNEDLAEILQKLN 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 69/469 (14%), Positives = 136/469 (28%), Gaps = 151/469 (32%)

Query: 86  NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVK------LLINQSWLME-FEE 138
             E+   +M  +    T         F     +   ++V+      L IN  +LM   + 
Sbjct: 48  KEEIDHIIMSKDAVSGTLR------LFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKT 100

Query: 139 DSVESTPIYL----AISRGHTD--------IARE---------ILEVRPRF--------- 168
           +  + + +         R + D        ++R          +LE+RP           
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 169 AGKT-------------DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLH 215
           +GKT              K  F  + + + + N N  + +L   + L  Q + + +T   
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDF-KIFWLN-LKNCNSPETVLEMLQKLLYQIDPN-WTSRS 217

Query: 216 LAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQ 275
             + N +++I      S  A   RL                       ++ +  CL    
Sbjct: 218 DHSSNIKLRI-----HSIQAELRRL---------------------LKSKPYENCLL--- 248

Query: 276 DQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCR----------------NHKNQTALDI 319
                      VL  N Q  +        ++ C+                      +LD 
Sbjct: 249 -----------VLL-NVQNAK-AWN--AFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 320 IEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKLTLESPINLVKVTSSSTSMDPSMN 379
                T D+    K L     +    +L P   EV  T  +P   + + + S     +  
Sbjct: 294 HSMTLTPDEV---KSLLLKYLDCRPQDL-PR--EVLTT--NPR-RLSIIAESIRDGLATW 344

Query: 380 MHLSRSWC-------SSPVRNIEPMLTKEL---LG---NHTKQKPKG-----EEANSSEP 421
            +     C        S +  +EP   +++   L                   +   S+ 
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 422 ESVEEANESPKS--LERYKDLSSRHMKELKQRYKSRQEKKNEVHREALQ 468
             V   N+  K   +E+    S+  +  +    K + E +  +HR  + 
Sbjct: 405 MVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 71  NEKLETPLHEACCQGN--HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLI 128
           +E  ET LH A    +         +  N     K   +  +A    C   + + +KLL+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 129 NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI 186
            +        +    TP+ +A    H     E+L      A     N    + Y   +
Sbjct: 226 -RGKASIEIANESGETPLDIAKRLKHEHCE-ELL----TQALSGRFNSHVHVEYEWRL 277

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 143 STPIYLAISRGHTDIAR--EILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK 200
            T ++LA+           + L        K    G + LHY     N    KLLL    
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229

Query: 201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
            + +  N+ G TPL +A            L             G    H+ V ++
Sbjct: 230 SIEIA-NESGETPLDIAKRLKHEHC-EELL--------TQALSGRFNSHVHVEYE 274

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 12/140 (8%)

Query: 167 RFAGKTDKNGFSPLH---YASSIGNVNMTKLLLNHNKDLALQYNK-----DGYTPLHLAA 218
           R+A K   +  + LH    A    ++           DL  +           T LHLA 
Sbjct: 118 RYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV 177

Query: 219 INGRVKIL--VAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQD 276
            +     L  V FL  +  + D+ T  G T  H     D     K L            +
Sbjct: 178 RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR--GKASIEIAN 235

Query: 277 QFGNTVLHLAVLRKNYQFVE 296
           + G T L +A   K+    E
Sbjct: 236 ESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 36  RDASLNTALHLAARFGHVELVTEITKLC--PELVAAENEKLETPLHEACCQGNHEVSAFL 93
                 TALHLA R      +  +  L      +  +  K  T LH  C   N E    L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 94  ME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129
           +   A+  +    N   ++   +A R  H    +LL  
Sbjct: 225 LRGKASIEI---ANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 244 GETVFHLAVRFDKYNAFKFLAE-SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            ET  HLAVR     +   +     N+     Q   G+T LH   L  N + ++ +++  
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-G 227

Query: 303 VLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
              I   N   +T LDI ++         L + 
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 19/137 (13%)

Query: 5   MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLN----TALHLAARFGHVELVTEIT 60
             Q L  AI   D  +++                         LHLA +  +   +    
Sbjct: 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP--- 207

Query: 61  KLCPELVA------AENEKLETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAF 112
            L   ++       A+     T LH A      +    L++  A       +N   ++A 
Sbjct: 208 -LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT---VNEAGETAL 263

Query: 113 SLACRQGHLDVVKLLIN 129
            +A ++ H +  +LL  
Sbjct: 264 DIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 10/137 (7%)

Query: 167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK-----DGYTPLHLAAING 221
           RFA +        L  A    ++        + +D                 LHLA    
Sbjct: 143 RFARRCTPEP-QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA 201

Query: 222 RVKIL--VAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFG 279
               L  V F+  +    D     G T  H A  +++ +  K L +     L    ++ G
Sbjct: 202 NQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK--GRALVGTVNEAG 259

Query: 280 NTVLHLAVLRKNYQFVE 296
            T L +A  + + +  E
Sbjct: 260 ETALDIARKKHHKECEE 276

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
               +G + LHYA+     +  KLLL     +    N+ G T L +A      +     L
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKEC-EELL 278

Query: 231 SSSPASFDRLTTYGETVFHLAVRFD 255
                        G   F L V + 
Sbjct: 279 --------EQAQAGTFAFPLHVDYS 295

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAF---KFLAESFNTCLFHGQDQFGNTVLHLAVL 288
             P          E V HLAV+     +     F+ +  N      +   GNT LH A L
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAADGNTALHYAAL 235

Query: 289 RKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKK 334
                 ++ ++K     +   N   +TALDI  +    +    L++
Sbjct: 236 YNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 3/127 (2%)

Query: 96  ANPTVATKLNHESQSAFSLACRQGHLDVVKLLI-NQSWLMEFEEDSVESTPIYLAISRGH 154
             P+      H     F  +     L  +   + + + +         +TP+  A +   
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247

Query: 155 TDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPL 214
                E L        + D  G  PLH+A+ +G+  +  L L    DL  + + +G  PL
Sbjct: 248 LLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPL 305

Query: 215 HLAAING 221
            +A    
Sbjct: 306 TIAMETA 312

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 70  ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN 129
             +   TPL +A    +     FL++    V  + +   +     A   GH  +  L + 
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFL- 288

Query: 130 QSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPR 167
           +        DS    P+ +A+   + DI   +   + R
Sbjct: 289 KRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.4 bits (104), Expect = 9e-05
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
             ++  +PL  A++  ++   + LL +  ++    +  G  PLH A I G   +   FL 
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLK 289

Query: 232 SSPASFDRLTTYGETVFHLAVR 253
              A      + G     +A+ 
Sbjct: 290 RG-ADLGARDSEGRDPLTIAME 310

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 331 SLKKLFKTAGNIGSPELSPPAAEVKLTLE 359
           +LKKL + +  + + + S PA  +K T+E
Sbjct: 21  ALKKL-QASLKLYADD-SAPALAIKATME 47

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 18/79 (22%)

Query: 414 EEANSSEPESVEEANES-PKSLERYKDLSSRHM---------KELKQRYKSRQ---EKKN 460
            +  + EPES+ +  E   K L+   D +S+ M         K+L++  + +    EK  
Sbjct: 77  ADRLTQEPESIRKWREEQRKRLQE-LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135

Query: 461 EVHREA----LQNARNTII 475
             +R A     Q     II
Sbjct: 136 INNRIADKAFYQQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	669
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.86
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.84
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.84
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.83
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.83
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.79
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.79
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.79
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.78
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.78
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.78
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.77
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.76
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.75
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.74
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.73
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.71
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.7
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.7
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.68
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.68
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.67
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.61
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.52

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.8e-45  Score=396.77  Aligned_cols=327  Identities=24%  Similarity=0.333  Sum_probs=214.0

Q ss_pred             ccCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931            4 GMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC   83 (669)
Q Consensus         4 ~m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~   83 (669)
                      +.++ |+.|+..|+.+.++.|++ . +..++.++..|.||||+||..|+.++|++|++.+++ ++.++..|.||||+|+.
T Consensus        14 g~t~-L~~Aa~~g~~~~v~~Ll~-~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           14 GLTP-LHVASFMGHLPIVKNLLQ-R-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             -CCH-HHHHHHHTCHHHHHHHHH-T-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHH
T ss_pred             CCCH-HHHHHHCCCHHHHHHHHH-c-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHH
Confidence            4455 888888888888888887 2 244566677778888888888888888888887776 66777777888888888


Q ss_pred             cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931           84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE  163 (669)
Q Consensus        84 ~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  163 (669)
                      .|+.+++++|+++|+++... +..|.||||+|+..|+.+++++|++.+.... ..+..|.||||.|+..|+.+++++|++
T Consensus        90 ~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~  167 (437)
T 1n11_A           90 IGHTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLE  167 (437)
T ss_dssp             HTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88888888888777765443 5666666666666666666666666554433 233344555555555555555555555


Q ss_pred             cCCcc--------------------------------cCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCC
Q 005931          164 VRPRF--------------------------------AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGY  211 (669)
Q Consensus       164 ~~~~~--------------------------------~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~  211 (669)
                      .+.+.                                ++..+.+|.||||+|+..|+.+++++|+++|++++.. +..|.
T Consensus       168 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~  246 (437)
T 1n11_A          168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGV  246 (437)
T ss_dssp             TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCC
Confidence            44432                                1333444455555555555555555555555554443 55566


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC
Q 005931          212 TPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN  291 (669)
Q Consensus       212 tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~  291 (669)
                      ||||+|+..|+.++++.|+.. +.+++..+..|+||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..|+
T Consensus       247 t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~  323 (437)
T 1n11_A          247 TPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGN  323 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             CHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CccCCCCCCCCCCHHHHHHHcCc
Confidence            666666666666666655543 355666667777777777777777777777765  55667777778888888888888


Q ss_pred             HHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCCCCC
Q 005931          292 YQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSP  345 (669)
Q Consensus       292 ~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~~~  345 (669)
                      .+++++|+ +.|+|++.+|..|+||||+|+..++.+    ++++|...|+....
T Consensus       324 ~~~v~~Ll-~~gad~n~~~~~g~t~L~~A~~~g~~~----iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          324 IKLVKFLL-QHQADVNAKTKLGYSPLHQAAQQGHTD----IVTLLLKNGASPNE  372 (437)
T ss_dssp             SHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCC
T ss_pred             HHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHCChHH----HHHHHHHCcCCCCC
Confidence            88888777 557778888888888888887777544    34445556655443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-44  Score=394.52  Aligned_cols=313  Identities=24%  Similarity=0.324  Sum_probs=249.8

Q ss_pred             HHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931            9 LSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE   88 (669)
Q Consensus         9 L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~e   88 (669)
                      |+.|+..|+.+.++.|++ . +..++.++..|.||||+||..|+.++|++|++.+++ ++..+..|.||||+|+..|+.+
T Consensus        51 L~~A~~~g~~~~v~~Ll~-~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~  127 (437)
T 1n11_A           51 LHMAARAGHTEVAKYLLQ-N-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVE  127 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHH-H-TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHh-C-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHH
Confidence            777777777777777776 2 244566677777777777777777777777777665 4555555555555555555555


Q ss_pred             HHHHHHhhC---------------------------------CccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccc
Q 005931           89 VSAFLMEAN---------------------------------PTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME  135 (669)
Q Consensus        89 ivk~Ll~~~---------------------------------~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~  135 (669)
                      ++++|++.+                                 +++... +..|.||||+|+..|+.+++++|++.+.+..
T Consensus       128 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  206 (437)
T 1n11_A          128 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH  206 (437)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC
T ss_pred             HHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            555555544                                 443322 4556666666666666666666666665543


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHH
Q 005931          136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLH  215 (669)
Q Consensus       136 ~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh  215 (669)
                       ..+..|.||||.|+..|+.++++.|++.+.+. +..+..|.||||+|+..|+.+++++|++++++++.. +..|.||||
T Consensus       207 -~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~  283 (437)
T 1n11_A          207 -SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLH  283 (437)
T ss_dssp             -CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTCCCHHH
T ss_pred             -CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC-CCCCCCHHH
Confidence             34556788999999999999999999988774 677889999999999999999999999999999876 999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 005931          216 LAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFV  295 (669)
Q Consensus       216 ~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv  295 (669)
                      +|+..|+.++++.|+.. +.+++..+..|+||||+|+.+|+.+++++|++.  +.++|.+|..|+||||+|+..|+.+++
T Consensus       284 ~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--gad~n~~~~~g~t~L~~A~~~g~~~iv  360 (437)
T 1n11_A          284 LVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH--QADVNAKTKLGYSPLHQAAQQGHTDIV  360 (437)
T ss_dssp             HHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHCChHHHH
Confidence            99999999999988876 578999999999999999999999999999996  778899999999999999999999999


Q ss_pred             HHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHH
Q 005931          296 EYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL  332 (669)
Q Consensus       296 ~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l  332 (669)
                      ++|+ +.|+|++.+|.+|+||+++|.+.++.+..+.+
T Consensus       361 ~~Ll-~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l  396 (437)
T 1n11_A          361 TLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVL  396 (437)
T ss_dssp             HHHH-HTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHH-HCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence            9999 67899999999999999999999986554444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.4e-39  Score=342.07  Aligned_cols=294  Identities=21%  Similarity=0.218  Sum_probs=194.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCC-CCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENE-KLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLA  115 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~-~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A  115 (669)
                      +..|+|+||.||+.|+.++|++||+.|++ ++.++. .|+||||+||..|+.++|++|+++|+++... +..+.++++.+
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~   99 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhh-ccCCCchhHHH
Confidence            34567777777777777777777777766 444443 4677777777777777777777777766544 66777777777


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc---------CCCCCCCChHHHHHHhc
Q 005931          116 CRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFA---------GKTDKNGFSPLHYASSI  186 (669)
Q Consensus       116 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~t~Lh~Aa~~  186 (669)
                      +..+..+++..+++.+.+.+ ..+..|.||||.|+..|+.++++++++.+.+..         ...+..|.||||+|+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence            77777777777777666654 455667777777777777777777777655432         12344577777777777


Q ss_pred             CCHHHHHHHHh-cCCccccccCCCCChHHHHHHHcCC---HHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHH
Q 005931          187 GNVNMTKLLLN-HNKDLALQYNKDGYTPLHLAAINGR---VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKF  262 (669)
Q Consensus       187 g~~eiv~~Ll~-~g~~~~~~~~~~g~tpLh~Aa~~g~---~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~  262 (669)
                      |+.+++++|++ .|++++.. |..|.|+++.++..+.   .+.+..+|...+++++.+|..|+||||+|+..++.+++++
T Consensus       179 g~~~~v~~LL~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~  257 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  257 (337)
T ss_dssp             TCHHHHHHHHHHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHhccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence            77777777774 46666654 6777777776655432   3334444555566777777777777777777777777777


Q ss_pred             HHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 005931          263 LAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNI  342 (669)
Q Consensus       263 Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~  342 (669)
                      |++. .+.++|.+|.+|+||||+|+..|+.++|++|| +.|+|+|.+     +||++|...++.+    ++++|..+||.
T Consensus       258 Ll~~-~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll-~~GAd~n~~-----~~L~~A~~~~~~~----iv~~Ll~~GA~  326 (337)
T 4g8k_A          258 LLEQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLC-KRGASTDCG-----DLVMTARRNYDHS----LVKVLLSHGAK  326 (337)
T ss_dssp             HHTS-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-TTSCSSTTC-----CHHHHHHHTTCHH----HHHHHHHTTCC
T ss_pred             HHHh-cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCC-----CHHHHHHHcCCHH----HHHHHHHCcCC
Confidence            7763 34566777777777777777777777777777 556666543     4777777766543    45556666665


Q ss_pred             CCC
Q 005931          343 GSP  345 (669)
Q Consensus       343 ~~~  345 (669)
                      .+.
T Consensus       327 ~d~  329 (337)
T 4g8k_A          327 EDF  329 (337)
T ss_dssp             C--
T ss_pred             CCC
Confidence            443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-39  Score=329.46  Aligned_cols=267  Identities=22%  Similarity=0.225  Sum_probs=223.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931           39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ  118 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~  118 (669)
                      +|.|+||.|+..|+.++|++|++.++++....+..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHc
Confidence            47788999999999999999988888743334778889999999999999999999888877654 77888899999888


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCC---------CCCCChHHHHHHhcCCH
Q 005931          119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKT---------DKNGFSPLHYASSIGNV  189 (669)
Q Consensus       119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~t~Lh~Aa~~g~~  189 (669)
                      |+.+++++|++++.+.+ ..+..|.||||.|+..|+.+++++|++.+.+.....         +..|.||||+|+..|+.
T Consensus        83 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             TCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence            88888888888887765 456678888888888888888888888877653221         67789999999999999


Q ss_pred             HHHHHHHhc-CCccccccCCCCChHHHHHHHcCC----HHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          190 NMTKLLLNH-NKDLALQYNKDGYTPLHLAAINGR----VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLA  264 (669)
Q Consensus       190 eiv~~Ll~~-g~~~~~~~~~~g~tpLh~Aa~~g~----~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll  264 (669)
                      +++++|++. |.+++.. +..|.||||.|+..++    .++++.|+.. +.+++.+|..|+||||+|+..++.+++++|+
T Consensus       162 ~~v~~Ll~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  239 (285)
T 1wdy_A          162 EVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHHTSCCCTTCC-CTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcc-CCCCCCHHHHHHHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999987 8888775 8889999999999998    7777666654 5788889999999999999999999999999


Q ss_pred             HhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccC
Q 005931          265 ESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNH  311 (669)
Q Consensus       265 ~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~  311 (669)
                      +. .+.+++.+|..|+||||+|+..++.+++++|+ +.|++++.+|.
T Consensus       240 ~~-~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll-~~Ga~~~~~d~  284 (285)
T 1wdy_A          240 EQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLC-KRGASTDCGDL  284 (285)
T ss_dssp             HS-SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHSSCSCCSSC
T ss_pred             hc-cCCCccccCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCCcccc
Confidence            83 26678889999999999999999999999999 77889988773

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.2e-39  Score=340.37  Aligned_cols=304  Identities=19%  Similarity=0.188  Sum_probs=262.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN   86 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~   86 (669)
                      .+|+.|+..|+.+.++.++. ..+..++.+|..|.||||+||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~-~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~  103 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLT-PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGH  103 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCC-TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             hhHHHHHHcCCHHHHHHHHH-hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHCCC
Confidence            45999999999999999998 55567788899999999999999999999999999988 78889999999999999999


Q ss_pred             HHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 005931           87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRP  166 (669)
Q Consensus        87 ~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~  166 (669)
                      .+++++|+++|+++... +..|.||||+|+..|+.+++++|++++.+.+ ..+..+.++++.|+..+..+.+.+...   
T Consensus       104 ~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~---  178 (351)
T 3utm_A          104 YEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFK---  178 (351)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhc---
Confidence            99999999999887654 8889999999999999999999999988776 566778999999988877777766553   


Q ss_pred             cccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCC
Q 005931          167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN---GRVKILVAFLSSSPASFDRLTTY  243 (669)
Q Consensus       167 ~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~---g~~e~v~~LL~~~~~~i~~~d~~  243 (669)
                                ..++..++..++.+.++.++..+..... .+..|.||||+|+..   +..++++.|+. .+.+++..|..
T Consensus       179 ----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~  246 (351)
T 3utm_A          179 ----------GHSLLQAAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKD  246 (351)
T ss_dssp             ----------HHHHHHHHHTTCHHHHHHHTTTCCTTCC-CTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTT
T ss_pred             ----------ccHHHHHHHhccHHHHHHHHHhhccccc-CCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCC
Confidence                      2467888899999999999887765444 488899999999999   44677666665 45889999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHc
Q 005931          244 GETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQA  323 (669)
Q Consensus       244 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~  323 (669)
                      |+||||+|+.+|+.+++++|++.  +.++|.+|..|+||||+|+..++.+++++|+ +.|+|++.+|..|+||+++|.  
T Consensus       247 g~t~L~~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~gad~~~~~~~g~tal~~a~--  321 (351)
T 3utm_A          247 FMTPLHVAAERAHNDVMEVLHKH--GAKMNALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISLQGFTAAQMGN--  321 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHSC--
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCChhhhhh--
Confidence            99999999999999999999996  7788999999999999999999999999999 678999999999999999972  


Q ss_pred             CCCchHHHHHHHHHHhC
Q 005931          324 GTNDDATSLKKLFKTAG  340 (669)
Q Consensus       324 ~~~~~~~~l~~~l~~~~  340 (669)
                            ..+++++....
T Consensus       322 ------~~~~~~l~~~~  332 (351)
T 3utm_A          322 ------EAVQQILSEST  332 (351)
T ss_dssp             ------HHHHHHHHHC-
T ss_pred             ------HHHHHHHHhcc
Confidence                  34455555544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.2e-39  Score=338.50  Aligned_cols=290  Identities=17%  Similarity=0.201  Sum_probs=256.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccC-CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRD-ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG   85 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d-~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g   85 (669)
                      ..|+.|++.||++.|+.|++ . +..++.++ ..|.||||+||..|+.++|++|++.+++ ++.++..+.+|++.++..+
T Consensus        27 t~L~~Av~~g~~~~V~~LL~-~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLE-G-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-H-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             hHHHHHHHcCCHHHHHHHHH-C-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHHHhcc
Confidence            35999999999999999998 3 35567675 4699999999999999999999999998 7889999999999999999


Q ss_pred             CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccc---------ccCCCCCcHHHHHHHcCCHH
Q 005931           86 NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF---------EEDSVESTPIYLAISRGHTD  156 (669)
Q Consensus        86 ~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~---------~~~~~~~t~L~~A~~~g~~~  156 (669)
                      ..+++..+++.+.++... +..|.||||+|+..|+.+++++|++.+.+.+.         ..+..|.||||.|+..|+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             cchhhHHhhhccchhhhh-ccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence            999999999999988665 89999999999999999999999999876542         23456889999999999999


Q ss_pred             HHHHHHhcCCcccCCCCCCCChHHHHHHhcCC----HHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005931          157 IAREILEVRPRFAGKTDKNGFSPLHYASSIGN----VNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS  232 (669)
Q Consensus       157 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~----~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~  232 (669)
                      ++++|++.....++..|..|.|+||.++..+.    .+++++|+++|++++.. |.+|.||||+|+..|+.++++.|+..
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~-d~~g~t~L~~a~~~~~~~~v~~Ll~~  261 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQ  261 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC-CGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence            99999976555568889999999998876543    46889999999999986 99999999999999999999999999


Q ss_pred             CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccc
Q 005931          233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCR  309 (669)
Q Consensus       233 ~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~  309 (669)
                      .+.+++.+|.+|+||||+|+++|+.+++++|++.  ++++|     +.||||+|+..++.++|++|| +.|+|+|..
T Consensus       262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~--GAd~n-----~~~~L~~A~~~~~~~iv~~Ll-~~GA~~d~~  330 (337)
T 4g8k_A          262 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKR--GASTD-----CGDLVMTARRNYDHSLVKVLL-SHGAKEDFH  330 (337)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT--SCSST-----TCCHHHHHHHTTCHHHHHHHH-HTTCCC---
T ss_pred             cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCC-----CCCHHHHHHHcCCHHHHHHHH-HCcCCCCCC
Confidence            8999999999999999999999999999999996  44544     456999999999999999999 778888864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-37  Score=317.56  Aligned_cols=263  Identities=19%  Similarity=0.234  Sum_probs=239.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhccc-CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQR-DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQG   85 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~-d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g   85 (669)
                      ..|+.|+..|+.+.++.|++ .+. .++.+ +..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~-~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLE-GGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             hHHHHHHHcCCHHHHHHHHH-cCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcC
Confidence            45999999999999999999 433 34555 88899999999999999999999999988 7888999999999999999


Q ss_pred             CHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCcccccc---------CCCCCcHHHHHHHcCCHH
Q 005931           86 NHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEE---------DSVESTPIYLAISRGHTD  156 (669)
Q Consensus        86 ~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~---------~~~~~t~L~~A~~~g~~~  156 (669)
                      +.+++++|+++|+++... +..|.||||+|+..|+.+++++|++.+.+.+...         +..|.||||.|+..|+.+
T Consensus        84 ~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHcCCCCCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence            999999999999987655 8899999999999999999999999988765332         667899999999999999


Q ss_pred             HHHHHHhcCCcccCCCCCCCChHHHHHHhcCC----HHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005931          157 IAREILEVRPRFAGKTDKNGFSPLHYASSIGN----VNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS  232 (669)
Q Consensus       157 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~----~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~  232 (669)
                      ++++|++......+..|..|.||||+|+..++    .+++++|+++|++++.. |..|.||||+|+..|+.++++.|+..
T Consensus       163 ~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~  241 (285)
T 1wdy_A          163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC-CTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            99999998444468889999999999999999    99999999999999976 99999999999999999999999998


Q ss_pred             CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Q 005931          233 SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQD  276 (669)
Q Consensus       233 ~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D  276 (669)
                      .+.+++.+|..|+||||+|++.++.+++++|++.  +++++.+|
T Consensus       242 ~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~--Ga~~~~~d  283 (285)
T 1wdy_A          242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKR--GASTDCGD  283 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--SSCSCCSS
T ss_pred             cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCCccc
Confidence            8899999999999999999999999999999997  66677666

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.7e-37  Score=316.90  Aligned_cols=260  Identities=18%  Similarity=0.200  Sum_probs=177.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCC----------ccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCC
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCP----------ELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNH  106 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~----------~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~  106 (669)
                      ...|.|+||+|+..|+.+.+..++..++          ...+.+|..|+||||+|+..|+.+++++|++.|.++... +.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII-TA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE-CT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CC
Confidence            5778999999999999877777665532          224567888999999999999999999999998887654 88


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhc
Q 005931          107 ESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI  186 (669)
Q Consensus       107 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  186 (669)
                      .|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+..  .+.+|.||||+|+..
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARR  167 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHc
Confidence            89999999999999999999998887665 456667788888888888888888888776642  234578888888888


Q ss_pred             CCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          187 GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES  266 (669)
Q Consensus       187 g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~  266 (669)
                      |+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++. +.+++. +..|+||||+|+..++.+++++|++.
T Consensus       168 g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          168 GHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            8888888888888877765 77788888888888888887777765 456663 67778888888888888888888875


Q ss_pred             cCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccc
Q 005931          267 FNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIY  307 (669)
Q Consensus       267 ~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~  307 (669)
                        +.+++.+|.+|+||||+|+  ++.+++++|++..++++.
T Consensus       245 --gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          245 --GADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             --TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             --CCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence              5677777888888888887  445777888766566554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.1e-38  Score=335.77  Aligned_cols=287  Identities=18%  Similarity=0.155  Sum_probs=139.8

Q ss_pred             cCHHHHHHHHhCCHHHHHHHHcCcch----------------------hhhcccCCCCChHHHHHHHcCCHHHHHHHHHh
Q 005931            5 MAQNLSEAIVRNDKQALINLVGCSNK----------------------RILLQRDASLNTALHLAARFGHVELVTEITKL   62 (669)
Q Consensus         5 m~~~L~~Ai~~gd~~~l~~ll~~~~~----------------------~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~   62 (669)
                      +.++|.+++..|+.+.++.+++....                      ......+..|.|+||+|+..|+ +++++|+..
T Consensus        37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~  115 (373)
T 2fo1_E           37 SQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITRE  115 (373)
T ss_dssp             ---------------------------------------------------------CCCHHHHHHHSSS-CCCSCCSTT
T ss_pred             cccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhccc
Confidence            56678888888887777766641110                      0112335555666666665333 455544332


Q ss_pred             CCccccccC-CCCCcHHHHHHHcCCHHHHHHHH--------hhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 005931           63 CPELVAAEN-EKLETPLHEACCQGNHEVSAFLM--------EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL  133 (669)
Q Consensus        63 ~~~~~~~~n-~~g~TpLh~Aa~~g~~eivk~Ll--------~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~  133 (669)
                        + ++..| ..|.||||+|+..|+.+++++|+        +.|.+++.. |..|.||||+|+..|+.+++++|++++.+
T Consensus       116 --~-~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  191 (373)
T 2fo1_E          116 --S-VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVAYLMKAGAD  191 (373)
T ss_dssp             --T-TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             --c-ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-CCCCCCHHHHHHHcChHHHHHHHHHCCCC
Confidence              1 33344 45666666666666655555444        445554433 55566666666666666666666665555


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC--cccCCCCCCCChHHHHHHhcC---CHHHHHHHHhcCCcccc----
Q 005931          134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRP--RFAGKTDKNGFSPLHYASSIG---NVNMTKLLLNHNKDLAL----  204 (669)
Q Consensus       134 ~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~--~~~~~~d~~g~t~Lh~Aa~~g---~~eiv~~Ll~~g~~~~~----  204 (669)
                      .+ ..+..|.||||+|+..|+.+++++|++.+.  ...+..|..|.||||+|+..+   +.+++++|+++|++++.    
T Consensus       192 ~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  270 (373)
T 2fo1_E          192 PT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  270 (373)
T ss_dssp             SC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             Cc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc
Confidence            44 344445566666666666666666655441  122444555666666666555   55666666666555543    


Q ss_pred             ---ccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCc
Q 005931          205 ---QYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNT  281 (669)
Q Consensus       205 ---~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~T  281 (669)
                         ..|..|.||||+|+..|+.++++.|+...+.+++..|..|+||||+|+..|+.+++++|++.  +.+++.+|..|+|
T Consensus       271 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--gad~~~~d~~g~t  348 (373)
T 2fo1_E          271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ--GASVEAVDATDHT  348 (373)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCSSSCC
T ss_pred             ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccCCCCCCCC
Confidence               12445556666666666666655555555555555555666666666666666666666554  4455555555666


Q ss_pred             HHHHHHHcCCHHHHHHHH
Q 005931          282 VLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       282 pLh~A~~~~~~~iv~~Ll  299 (669)
                      |||+|+..|+.+++++|+
T Consensus       349 ~l~~A~~~g~~~iv~~Ll  366 (373)
T 2fo1_E          349 ARQLAQANNHHNIVDIFD  366 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            666666666666666555

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.7e-37  Score=328.29  Aligned_cols=260  Identities=18%  Similarity=0.161  Sum_probs=171.2

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHH
Q 005931           33 LLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAF  112 (669)
Q Consensus        33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL  112 (669)
                      .+..|..|.||||+||..|+.++|++|++.+.+ ++..|..|.||||+|+..|+.++|++|++.|++..   +..|.|||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L   88 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPI   88 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHH
Confidence            456688999999999999999999999999988 78999999999999999999999999999999543   45899999


Q ss_pred             HHHHHcCCHHHHHHHHcC----CCcccc----------------ccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCcccC
Q 005931          113 SLACRQGHLDVVKLLINQ----SWLMEF----------------EEDSVESTPIYLAISRG--HTDIAREILEVRPRFAG  170 (669)
Q Consensus       113 ~~A~~~g~~eiv~~Ll~~----~~~~~~----------------~~~~~~~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~  170 (669)
                      |+|+..|+.+++++|++.    +...+.                ..+..|.||||+|+..|  +.+++++|++.+.+. +
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~  167 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-T  167 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-T
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-c
Confidence            999999999999999987    433321                03334555555555555  555555555555443 4


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHhcCCc-----cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC
Q 005931          171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKD-----LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGE  245 (669)
Q Consensus       171 ~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~-----~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~  245 (669)
                      ..|..|.||||+|+..|+.+++++|+++|++     ++.. |..|.||||+|+..|+.++++.|++. +.+++..|..|+
T Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~  245 (364)
T 3ljn_A          168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHT  245 (364)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTSC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCC
Confidence            4455555555555555555555555555555     4433 55555555555555555555555443 355555555555


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCC----------CCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          246 TVFHLAVRFDKYNAFKFLAESFNTC----------LFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       246 t~Lh~Av~~~~~~iv~~Ll~~~~~~----------~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      ||||+|+..|+.+++++|++.+...          .....+..|+|||+.|+..++.+.+..|+
T Consensus       246 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll  309 (364)
T 3ljn_A          246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL  309 (364)
T ss_dssp             CHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred             CHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHH
Confidence            5555555555555555555542210          01113445555555555555555444444

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-37  Score=328.65  Aligned_cols=275  Identities=17%  Similarity=0.178  Sum_probs=218.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931           43 ALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLD  122 (669)
Q Consensus        43 ~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e  122 (669)
                      +++-+...|+.++++.++.      +..+..|.||||+|+..|+ +++++|+..  +++...+..|.||||+|+..|+.+
T Consensus        69 ~~~~~~~~g~~~~~~~~~~------~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~  139 (373)
T 2fo1_E           69 YGNGNDFLGDFNHTNLQIP------TEPEPESPIKLHTEAAGSY-AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAE  139 (373)
T ss_dssp             -------------------------------CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCS
T ss_pred             cCCCCCccccccccccccc------cCCCCCCccHHHHHhcCCc-hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHH
Confidence            4455555566666665543      3457789999999999654 888888764  333332378999999999999998


Q ss_pred             HHHHHH--------cCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHH
Q 005931          123 VVKLLI--------NQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL  194 (669)
Q Consensus       123 iv~~Ll--------~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~  194 (669)
                      ++++|+        +.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++
T Consensus       140 ~v~~Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~  217 (373)
T 2fo1_E          140 KSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVY  217 (373)
T ss_dssp             CCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHH
Confidence            888776        6777766 56778999999999999999999999998875 6788999999999999999999999


Q ss_pred             HHhcC---CccccccCCCCChHHHHHHHcC---CHHHHHHHHhcCCCCccc--------ccCCCCcHHHHHHHcCCHHHH
Q 005931          195 LLNHN---KDLALQYNKDGYTPLHLAAING---RVKILVAFLSSSPASFDR--------LTTYGETVFHLAVRFDKYNAF  260 (669)
Q Consensus       195 Ll~~g---~~~~~~~~~~g~tpLh~Aa~~g---~~e~v~~LL~~~~~~i~~--------~d~~g~t~Lh~Av~~~~~~iv  260 (669)
                      |++++   .+++.. |..|.||||+|+..|   +.++++.|+..+ .+++.        .|..|+||||+|+..|+.+++
T Consensus       218 Ll~~~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  295 (373)
T 2fo1_E          218 MLNSTKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV  295 (373)
T ss_dssp             HTTSHHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHH
T ss_pred             HHhcCccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCCHHHH
Confidence            99988   677765 999999999999998   889988888765 55554        577999999999999999999


Q ss_pred             HHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHH
Q 005931          261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL  332 (669)
Q Consensus       261 ~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l  332 (669)
                      ++|++.. +.+++.+|.+|+||||+|+..|+.+++++|+ +.|+|++.+|..|+|||++|...++.+.++.|
T Consensus       296 ~~Ll~~~-~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~L  365 (373)
T 2fo1_E          296 KYLVGEK-GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQGASVEAVDATDHTARQLAQANNHHNIVDIF  365 (373)
T ss_dssp             HHHHHHS-CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHhc-CCCccCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999862 4788999999999999999999999999999 67999999999999999999999986654443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=304.85  Aligned_cols=243  Identities=19%  Similarity=0.209  Sum_probs=195.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCCc----------cccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCC
Q 005931           71 NEKLETPLHEACCQGNHEVSAFLMEANPT----------VATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDS  140 (669)
Q Consensus        71 n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~----------~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~  140 (669)
                      ...|.|+||+|+..|+.+.+..++..++.          .....+..|.||||+|+..|+.+++++|++.+.+.+ ..+.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence            45789999999999998777776654422          233458899999999999999999999999988766 5677


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc
Q 005931          141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN  220 (669)
Q Consensus       141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~  220 (669)
                      .|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++|++++.  +.+|.||||+|+..
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARR  167 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHc
Confidence            7999999999999999999999998775 77899999999999999999999999999999875  55699999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       221 g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      |+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++.  +.+++ .|..|+||||+|+..++.+++++|+ 
T Consensus       168 g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll-  242 (285)
T 3d9h_A          168 GHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLES--GADVN-QGKGQDSPLHAVVRTASEELACLLM-  242 (285)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT--TCCTT-CCBTTBCHHHHHHHTTCHHHHHHHH-
T ss_pred             CCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC--CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHH-
Confidence            999999888875 478999999999999999999999999999997  55666 4899999999999999999999999 


Q ss_pred             hcCcccccccCCCCCHHHHHHH
Q 005931          301 ETVLDIYCRNHKNQTALDIIEQ  322 (669)
Q Consensus       301 ~~~~d~~~~n~~g~T~L~~a~~  322 (669)
                      +.|+|++.+|.+|+|||++|..
T Consensus       243 ~~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          243 DFGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             HTTCCTTCCCTTSCCGGGGSCT
T ss_pred             HCCCCCCCcCCCCCCHHHHhcC
Confidence            6789999999999999999983

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6e-36  Score=305.46  Aligned_cols=267  Identities=19%  Similarity=0.171  Sum_probs=189.2

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCc--cccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCc
Q 005931           33 LLQRDASLNTALHLAARFGHVELVTEITKLCPE--LVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQS  110 (669)
Q Consensus        33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~--~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~t  110 (669)
                      ++.+|..|.||||+||..|+.++|++|++.+++  .++.+|..|.||||+|+..|+.+++++|+++|+++... +..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCC
Confidence            567899999999999999999999999998765  37888999999999999999999999999999998755 889999


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCH-
Q 005931          111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNV-  189 (669)
Q Consensus       111 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~-  189 (669)
                      |||+|+..|+.+++++|++.+.........   +.+                ...   .......+.++++.++..+.. 
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~  138 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASD---TYL----------------TQS---QDCTPDTSHAPAAVDSQPNPEN  138 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHH---HHh----------------hcc---cccCcchhcchhhhccccccch
Confidence            999999999999999999988654321110   000                000   011223455666666655443 


Q ss_pred             HHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931          190 NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT-YGETVFHLAVRFDKYNAFKFLAESFN  268 (669)
Q Consensus       190 eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~  268 (669)
                      .....+...+.+++.. +..|.||||+|+..|+.++++.|+..+ .+++..+. .|+||||+|+..|+.+++++|++.  
T Consensus       139 ~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--  214 (282)
T 1oy3_D          139 EEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA--  214 (282)
T ss_dssp             -----CCCGGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--
T ss_pred             hhhhhhhhhhhcCCCc-CCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc--
Confidence            3344455556666654 888999999999999999988888754 67777775 499999999999999999999986  


Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCc
Q 005931          269 TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND  327 (669)
Q Consensus       269 ~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~  327 (669)
                      +.+++.+|..|+||||+|+..++.+++++|+ +.|++++.+|..|.||+++|....+.+
T Consensus       215 gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~tpl~~a~~~~~~~  272 (282)
T 1oy3_D          215 GADPTARMYGGRTPLGSALLRPNPILARLLR-AHGAPEPEDGGDKLSPCSSSGSDSDSD  272 (282)
T ss_dssp             TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH-HTTCCCCCCC-----------------
T ss_pred             CCCCcccccCCCCHHHHHHHcCCcHHHHHHH-HcCCCcCcCCCcccccccccCCccccc
Confidence            6788899999999999999999999999999 788899999999999999998866544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.6e-36  Score=299.75  Aligned_cols=241  Identities=21%  Similarity=0.186  Sum_probs=130.9

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHH
Q 005931           33 LLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAF  112 (669)
Q Consensus        33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL  112 (669)
                      ++.+|..|.||||+|+..|+.-.                     ....+...++.+++++|++.|+++....+..|.|||
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~---------------------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L   61 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLE---------------------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL   61 (253)
T ss_dssp             ----------------------------------------------------------------------CCCTTSCCHH
T ss_pred             CCCCCCCCCcHHHHHHhcccccc---------------------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcHH
Confidence            45667777777777777662100                     000122333555555555555555444455555555


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHH
Q 005931          113 SLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT  192 (669)
Q Consensus       113 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv  192 (669)
                      |+|+..|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++
T Consensus        62 ~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  140 (253)
T 1yyh_A           62 HLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML  140 (253)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHH
Confidence            55555555555555555554443 33444556666666666666666666655544456667777777777777777777


Q ss_pred             HHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC
Q 005931          193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLF  272 (669)
Q Consensus       193 ~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~i  272 (669)
                      ++|+++|++++.. |..|.||||+|+..|+.++++.|+.. +.+++..|..|+||||+|+..|+.+++++|++.  +.++
T Consensus       141 ~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~  216 (253)
T 1yyh_A          141 EDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDH--FANR  216 (253)
T ss_dssp             HHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCT
T ss_pred             HHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCc
Confidence            7777777777765 77777777777777777777666654 466777777777777777777777777777775  5566


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          273 HGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       273 n~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      +.+|..|+||||+|+..|+.+++++|.
T Consensus       217 ~~~d~~g~tpl~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          217 DITDHMDRLPRDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            777777788888888777777777777

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-35  Score=299.43  Aligned_cols=216  Identities=19%  Similarity=0.208  Sum_probs=125.3

Q ss_pred             HHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 005931           47 AARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKL  126 (669)
Q Consensus        47 Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~  126 (669)
                      +...++.+++++|++.+++..+..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..|+.+++++
T Consensus        30 ~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~  108 (253)
T 1yyh_A           30 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQI  108 (253)
T ss_dssp             ----------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHH
Confidence            445556666666666666544455566666666666666666666666666555433 5566666666666666666666


Q ss_pred             HHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccccc
Q 005931          127 LINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQY  206 (669)
Q Consensus       127 Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~  206 (669)
                      |++.+.......+..|.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++|++++.. 
T Consensus       109 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-  186 (253)
T 1yyh_A          109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-  186 (253)
T ss_dssp             HHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC-
T ss_pred             HHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-
Confidence            666554222244555666666666666666666666665553 455666777777777777777777777777776654 


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES  266 (669)
Q Consensus       207 ~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~  266 (669)
                      |..|.||||+|+..|+.++++.|++. +.+++.+|..|+||+|+|+++|+.+++++|...
T Consensus       187 ~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          187 NNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            66777777777777777776666554 356667777777777777777777777777653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.5e-35  Score=309.38  Aligned_cols=286  Identities=19%  Similarity=0.163  Sum_probs=251.3

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHH
Q 005931           33 LLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAF  112 (669)
Q Consensus        33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL  112 (669)
                      ....+..+.|+||.||..|+.+.|+.|+......++.+|..|.||||+|+..|+.+++++|++.|+++... +..|.|||
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L   95 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-DKGGLVPL   95 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHH
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCcHH
Confidence            34457788999999999999999999998755558889999999999999999999999999999987665 88999999


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHH
Q 005931          113 SLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMT  192 (669)
Q Consensus       113 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv  192 (669)
                      |+|+..|+.+++++|++++.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..+..|.+|+++++..+..+.+
T Consensus        96 ~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~  173 (351)
T 3utm_A           96 HNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERL  173 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHH
Confidence            99999999999999999998776 56777999999999999999999999998875 67789999999999998888877


Q ss_pred             HHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHc---CCHHHHHHHHHhcCC
Q 005931          193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRF---DKYNAFKFLAESFNT  269 (669)
Q Consensus       193 ~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~---~~~~iv~~Ll~~~~~  269 (669)
                      .+...             ..++..++..+..+.+..++...... ...+..|.||||+|+..   +..+++++|++.  +
T Consensus       174 ~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~--g  237 (351)
T 3utm_A          174 TYEFK-------------GHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRK--G  237 (351)
T ss_dssp             HHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT--T
T ss_pred             Hhhhc-------------ccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc--C
Confidence            77653             24788899999999999988776433 34678899999999999   558999999996  6


Q ss_pred             CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 005931          270 CLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNI  342 (669)
Q Consensus       270 ~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~  342 (669)
                      .+++.+|.+|+||||+|+..|+.+++++|+ +.|+|++.+|..|+|||++|...++.+.    .++|...|+.
T Consensus       238 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~n~~d~~g~t~L~~A~~~~~~~~----v~~Ll~~gad  305 (351)
T 3utm_A          238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLH-KHGAKMNALDSLGQTALHRAALAGHLQT----CRLLLSYGSD  305 (351)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHH----HHHHHHTTCC
T ss_pred             CCcCCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCcHHH----HHHHHHcCCC
Confidence            788999999999999999999999999999 7789999999999999999999987654    4555566654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.2e-36  Score=318.43  Aligned_cols=256  Identities=17%  Similarity=0.182  Sum_probs=221.9

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHH
Q 005931           67 VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPI  146 (669)
Q Consensus        67 ~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L  146 (669)
                      .+..|..|.||||+||..|+.++|++|++.|+++... +..|.||||+|+..|+.+++++|++.+...+   +..|.|||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L   88 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPI   88 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHH
Confidence            4556778999999999999999999999999987655 8999999999999999999999999987543   34689999


Q ss_pred             HHHHHcCCHHHHHHHHhc----CCcccCC-----------------CCCCCChHHHHHHhcC--CHHHHHHHHhcCCccc
Q 005931          147 YLAISRGHTDIAREILEV----RPRFAGK-----------------TDKNGFSPLHYASSIG--NVNMTKLLLNHNKDLA  203 (669)
Q Consensus       147 ~~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~d~~g~t~Lh~Aa~~g--~~eiv~~Ll~~g~~~~  203 (669)
                      |+|+..|+.+++++|++.    +... +.                 .|..|.||||+|+..|  +.+++++|+++|++++
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~  167 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT  167 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence            999999999999999998    4443 22                 6778999999999999  9999999999999998


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHhcCCC----CcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Q 005931          204 LQYNKDGYTPLHLAAINGRVKILVAFLSSSPA----SFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFG  279 (669)
Q Consensus       204 ~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~----~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G  279 (669)
                      .. |..|.||||+|+..|+.++++.|+.....    +++..|..|+||||+|+..|+.+++++|++.  +.+++.+|..|
T Consensus       168 ~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--gad~~~~d~~g  244 (364)
T 3ljn_A          168 AK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM--GIDVNMEDNEH  244 (364)
T ss_dssp             CC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT--TCCTTCCCTTS
T ss_pred             cc-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCC
Confidence            86 99999999999999999999999986533    2899999999999999999999999999996  77889999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCccccc------------ccCCCCCHHHHHHHcCCCchHHH
Q 005931          280 NTVLHLAVLRKNYQFVEYIIKETVLDIYC------------RNHKNQTALDIIEQAGTNDDATS  331 (669)
Q Consensus       280 ~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~------------~n~~g~T~L~~a~~~~~~~~~~~  331 (669)
                      .||||+|+..|+.+++++|++. +.+++.            .+..|+||+..|+..++.+.+..
T Consensus       245 ~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~  307 (364)
T 3ljn_A          245 TVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ  307 (364)
T ss_dssp             CCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred             CCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence            9999999999999999999954 545433            56778899888776664444433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.1e-34  Score=283.69  Aligned_cols=222  Identities=24%  Similarity=0.371  Sum_probs=118.7

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931           35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL  114 (669)
Q Consensus        35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~  114 (669)
                      .+|..|.||||+||..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|.++..            
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------   72 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP------------   72 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC------------
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC------------
Confidence            3445555555555555555555555555444 344444555555555555555555555554444322            


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHH
Q 005931          115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL  194 (669)
Q Consensus       115 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~  194 (669)
                                             .+..|.||||.|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++
T Consensus        73 -----------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  129 (237)
T 3b7b_A           73 -----------------------KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL  129 (237)
T ss_dssp             -----------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             -----------------------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Confidence                                   223344444444444444555555544433344555666666666666666666666


Q ss_pred             HHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCcc
Q 005931          195 LLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG  274 (669)
Q Consensus       195 Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~  274 (669)
                      |+++|++++.. +..|.||||+|+..|+.++++.|+.. +.+++..|..|.||||+|++.++.+++++|++.  +.+++.
T Consensus       130 Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--gad~~~  205 (237)
T 3b7b_A          130 LLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR--DSDVTL  205 (237)
T ss_dssp             HHHTTCCTTCC-CTTSCCHHHHHHHHCCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTC
T ss_pred             HHHCCCCCCcc-CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc--CCCCCc
Confidence            66666665543 55566666666666666655555443 245555555555555555555555555555553  444555


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHH
Q 005931          275 QDQFGNTVLHLAVLRKNYQFVE  296 (669)
Q Consensus       275 ~D~~G~TpLh~A~~~~~~~iv~  296 (669)
                      +|.+|+||||+|+..++...+.
T Consensus       206 ~d~~g~t~l~~A~~~~~~~~~~  227 (237)
T 3b7b_A          206 KNKEGETPLQCASLNSQVWSAL  227 (237)
T ss_dssp             CCTTSCCHHHHSCTTCHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Confidence            5555555555555555544333

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.2e-34  Score=283.09  Aligned_cols=220  Identities=25%  Similarity=0.267  Sum_probs=176.9

Q ss_pred             ccCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931            4 GMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC   83 (669)
Q Consensus         4 ~m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~   83 (669)
                      +.++ |+.|+..|+.+.++.|++ . +..++.++..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus        11 g~t~-L~~A~~~g~~~~v~~Ll~-~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   86 (237)
T 3b7b_A           11 KRSP-LHAAAEAGHVDICHMLVQ-A-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAK   86 (237)
T ss_dssp             SCCH-HHHHHHHTCHHHHHHHHH-T-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHHHHHHH
T ss_pred             CCCH-HHHHHHcCcHHHHHHHHH-c-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHH
Confidence            4455 999999999999999998 3 355788899999999999999999999999999988 78889999999999999


Q ss_pred             cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931           84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE  163 (669)
Q Consensus        84 ~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  163 (669)
                      .|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++
T Consensus        87 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~  165 (237)
T 3b7b_A           87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFSGCVDIAEILLA  165 (237)
T ss_dssp             TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999955455558889999999999999999999998877654 445567777777777777777777777


Q ss_pred             cCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931          164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL  230 (669)
Q Consensus       164 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL  230 (669)
                      .+.+. +..|..|.||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+.+|+.+.+.+++
T Consensus       166 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~-d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          166 AKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             TTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             cCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCcc-CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            76654 555667777777777777777777777777777654 777777777777777765554444

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.1e-34  Score=294.03  Aligned_cols=260  Identities=18%  Similarity=0.134  Sum_probs=182.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCcc--ccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCc
Q 005931           67 VAAENEKLETPLHEACCQGNHEVSAFLMEANPTV--ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVEST  144 (669)
Q Consensus        67 ~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t  144 (669)
                      ++.+|..|+||||+|+..|+.+++++|++.+++.  ....+..|.||||+|+..|+.+++++|++++.+.+ ..+..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCC
Confidence            4678899999999999999999999999988762  34457888999999999999999999998887765 45666788


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHH
Q 005931          145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK  224 (669)
Q Consensus       145 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e  224 (669)
                      |||+|+..|+.+++++|++.++.......   .+                ++..+..   .....+.++++.++..+...
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~---~~----------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~  138 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDAS---DT----------------YLTQSQD---CTPDTSHAPAAVDSQPNPEN  138 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhH---HH----------------Hhhcccc---cCcchhcchhhhccccccch
Confidence            88888888888888888877665421110   00                0011111   11345678888888877777


Q ss_pred             HHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931          225 ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQ-FGNTVLHLAVLRKNYQFVEYIIKETV  303 (669)
Q Consensus       225 ~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~-~G~TpLh~A~~~~~~~iv~~Ll~~~~  303 (669)
                      ....++...+.+++..+..|.||||+|+..|+.+++++|++.  +.+++.++. .|+||||+|+..++.+++++|+ +.|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~g  215 (282)
T 1oy3_D          139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA--GADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAG  215 (282)
T ss_dssp             -----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             hhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH-HcC
Confidence            767777777788999999999999999999999999999997  667888885 4999999999999999999999 669


Q ss_pred             cccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCCCCCCCCCchhhhhc
Q 005931          304 LDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVKL  356 (669)
Q Consensus       304 ~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  356 (669)
                      +|++.+|..|+|||++|...++.+    +.++|...|+........+..++..
T Consensus       216 ad~~~~d~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~  264 (282)
T 1oy3_D          216 ADPTARMYGGRTPLGSALLRPNPI----LARLLRAHGAPEPEDGGDKLSPCSS  264 (282)
T ss_dssp             CCTTCCCTTSCCHHHHHHTSSCHH----HHHHHHHTTCCCCCCC---------
T ss_pred             CCCcccccCCCCHHHHHHHcCCcH----HHHHHHHcCCCcCcCCCcccccccc
Confidence            999999999999999999988654    5666777888776655555554443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.5e-34  Score=288.12  Aligned_cols=232  Identities=21%  Similarity=0.205  Sum_probs=169.2

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHH----hCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCC
Q 005931           33 LLQRDASLNTALHLAARFGHVELVTEITK----LCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHES  108 (669)
Q Consensus        33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~----~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g  108 (669)
                      ++.+|..|.||||+||..|+.+++++|++    .+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... +..|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g   79 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHG   79 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTS
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCC
Confidence            35678888888888888888888888887    3444 7778888888888888888888888888888776544 6677


Q ss_pred             CcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCC
Q 005931          109 QSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN  188 (669)
Q Consensus       109 ~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~  188 (669)
                      .||||+|+..|+.+++++|++.+....                               ...+..|..|.||||+|+..|+
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~-------------------------------~~~~~~~~~g~t~L~~A~~~~~  128 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGT-------------------------------LDLEARNYDGLTALHVAVNTEC  128 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTS-------------------------------CCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcc-------------------------------ccccccCcCCCcHHHHHHHcCC
Confidence            777777777777777777776654210                               0124456667777777777777


Q ss_pred             HHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931          189 VNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN  268 (669)
Q Consensus       189 ~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~  268 (669)
                      .+++++|+++|++++...+..|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..++.+++++|++.  
T Consensus       129 ~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--  205 (241)
T 1k1a_A          129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS--  205 (241)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--
T ss_pred             HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--
Confidence            77777777777777765336777788888777777777776655 467777777888888888888888888888875  


Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          269 TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       269 ~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      +.+++.+|..|+||||+|+..++.++++.|++
T Consensus       206 ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          206 GADSSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             TCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             CCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            56677788888888888888888888887773

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.7e-34  Score=286.15  Aligned_cols=221  Identities=24%  Similarity=0.267  Sum_probs=171.0

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHh----hCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCC
Q 005931           68 AAENEKLETPLHEACCQGNHEVSAFLME----ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES  143 (669)
Q Consensus        68 ~~~n~~g~TpLh~Aa~~g~~eivk~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~  143 (669)
                      +.+|..|+||||+|+..|+.+++++|++    .+.++.. .+..|.                                  
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~----------------------------------   47 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQ----------------------------------   47 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC-CCTTSC----------------------------------
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-ccccCC----------------------------------
Confidence            4556677777777777777777777775    3333322 244444                                  


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC----ccccccCCCCChHHHHHHH
Q 005931          144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK----DLALQYNKDGYTPLHLAAI  219 (669)
Q Consensus       144 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~----~~~~~~~~~g~tpLh~Aa~  219 (669)
                      ||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++++    +++.. +..|.||||.|+.
T Consensus        48 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~  125 (241)
T 1k1a_A           48 TPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVN  125 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC-CTTSCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc-CcCCCcHHHHHHH
Confidence            4555555555555555555544443 4456778888888888888888888888876    55554 8899999999999


Q ss_pred             cCCHHHHHHHHhcCCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 005931          220 NGRVKILVAFLSSSPASFDRLT-TYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI  298 (669)
Q Consensus       220 ~g~~e~v~~LL~~~~~~i~~~d-~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~L  298 (669)
                      .|+.++++.|+..+ .+++..+ ..|.||||+|+.+++.+++++|++.  +.+++.+|..|+||||+|+..++.+++++|
T Consensus       126 ~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  202 (241)
T 1k1a_A          126 TECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTL  202 (241)
T ss_dssp             HTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999998888764 6788877 8899999999999999999999997  678899999999999999999999999999


Q ss_pred             HHhcCcccccccCCCCCHHHHHHHcCCCchH
Q 005931          299 IKETVLDIYCRNHKNQTALDIIEQAGTNDDA  329 (669)
Q Consensus       299 l~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~  329 (669)
                      + +.|+|++.+|..|+|||++|...++.+..
T Consensus       203 l-~~ga~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          203 V-RSGADSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             H-HTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             H-hcCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence            9 68899999999999999999887654433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.6e-33  Score=278.92  Aligned_cols=222  Identities=24%  Similarity=0.292  Sum_probs=152.2

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931           38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR  117 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~  117 (669)
                      ..++|+||.||..|+.+.+++|++.++...+..|..|.||||+|+..|+.+++++|++.|.++... +..|.||||+|+.
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~   82 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAAS   82 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCc-CCCCCCHHHHHHH
Confidence            346677777777777777777777766666666777777777777777777777777776665433 5556666666666


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q 005931          118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN  197 (669)
Q Consensus       118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~  197 (669)
                      .|+.+++++|++++.+.                                   +..|..|.||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~v~~Ll~~g~~~-----------------------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  127 (231)
T 3aji_A           83 AGXDEIVKALLVKGAHV-----------------------------------NAVNQNGCTPLHYAASKNRHEIAVMLLE  127 (231)
T ss_dssp             HTCHHHHHHHHHTTCCT-----------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCC-----------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            66666665555554332                                   3445566677777777777777777777


Q ss_pred             cCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC
Q 005931          198 HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQ  277 (669)
Q Consensus       198 ~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~  277 (669)
                      +|++++.. +..|.||||.|+..|+.++++.|+.. +.+++.+|..|+||||+|+..++.+++++|++.  +.+++.+|.
T Consensus       128 ~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~  203 (231)
T 3aji_A          128 GGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--GASIYIENK  203 (231)
T ss_dssp             TTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCT
T ss_pred             cCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC--CCCCCCCCC
Confidence            77766654 66677777777777777776666653 466677777777777777777777777777775  556677777


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHH
Q 005931          278 FGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       278 ~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      .|.||||+|+..++.+++++|+
T Consensus       204 ~g~t~l~~A~~~~~~~i~~lL~  225 (231)
T 3aji_A          204 EEKTPLQVAKGGLGLILKRLAE  225 (231)
T ss_dssp             TSCCHHHHSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhhHHHHHHHHHc
Confidence            7777777777777777777776

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.6e-33  Score=278.93  Aligned_cols=218  Identities=21%  Similarity=0.272  Sum_probs=168.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN   86 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~   86 (669)
                      .+|+.|+..|+++.++.+++ ..+..++.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+
T Consensus         8 ~~l~~A~~~g~~~~v~~ll~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            8 IMICNLAYSGKLDELKERIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SHHHHHHHHTCHHHHHHHHH-HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTC
T ss_pred             chHHHHHHhCCHHHHHHHHH-hchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHcCH
Confidence            44999999999999999999 66677888899999999999999999999999999988 78899999999999999999


Q ss_pred             HHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 005931           87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRP  166 (669)
Q Consensus        87 ~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~  166 (669)
                      .+++++|++.|+++... +..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++.+.
T Consensus        86 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  163 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLFYKA  163 (231)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999999987654 8889999999999999999999988776654 344456666666666666666666666555


Q ss_pred             cccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931          167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL  230 (669)
Q Consensus       167 ~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL  230 (669)
                      +. +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..++.++++.|+
T Consensus       164 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~~lL~  225 (231)
T 3aji_A          164 ST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE-NKEEKTPLQVAKGGLGLILKRLAE  225 (231)
T ss_dssp             CS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred             Cc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHhhHHHHHHHHHc
Confidence            43 445556666666666666666666666666665543 556666666666555555544443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.3e-33  Score=278.79  Aligned_cols=221  Identities=22%  Similarity=0.296  Sum_probs=158.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhC--CccccccCCCCCcHHHHHHH
Q 005931           40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEAN--PTVATKLNHESQSAFSLACR  117 (669)
Q Consensus        40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~--~~~~~~~~~~g~tpL~~A~~  117 (669)
                      |+||||+||..|+.++|++|++.+++..+..|..|.||||+|+..|+.+++++|++.+  .++....+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6778888888888888888887777766667777788888888888888888888777  44443245566666666666


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q 005931          118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN  197 (669)
Q Consensus       118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~  197 (669)
                      .|+.+++++|++.+..                                .+ .+..|..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~--------------------------------~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  128 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLK--------------------------------PD-LNKITNQGVTCLHLAVGKKWFEVSQFLIE  128 (228)
T ss_dssp             HCCHHHHHHHHSSSSC--------------------------------CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCC--------------------------------cc-cccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence            6666666666655411                                22 24456667777777777777777777777


Q ss_pred             cCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHH-HhcCCCCCccCC
Q 005931          198 HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLA-ESFNTCLFHGQD  276 (669)
Q Consensus       198 ~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll-~~~~~~~in~~D  276 (669)
                      +|++++.. +..|.||||+|+..|+.++++.|+..++.+++..|..|+||||+|+..++.+++++|+ +.  +.+++.+|
T Consensus       129 ~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~--ga~~~~~~  205 (228)
T 2dzn_A          129 NGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY--GAEYDLVD  205 (228)
T ss_dssp             TTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH--CCCSCCBC
T ss_pred             cCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--CCCCCccC
Confidence            77777765 7777888888888888887777777666777777888888888888888888888888 54  56777788


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHH
Q 005931          277 QFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       277 ~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      .+|.||||+|+..   +++++|+
T Consensus       206 ~~g~t~l~~A~~~---~~~~~l~  225 (228)
T 2dzn_A          206 NKGAKAEDVALNE---QVKKFFL  225 (228)
T ss_dssp             TTSCBGGGGCSST---THHHHHH
T ss_pred             CCCCcHHHHHHHH---HHHHHHH
Confidence            8888888888644   4555555

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.3e-33  Score=277.11  Aligned_cols=215  Identities=19%  Similarity=0.250  Sum_probs=180.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC
Q 005931           74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG  153 (669)
Q Consensus        74 g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g  153 (669)
                      |+||||+|++.|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.+..                    
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--------------------   61 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN--------------------   61 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT--------------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc--------------------
Confidence            678888888888888888888877776665566667777777666666666666665532                    


Q ss_pred             CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcC--CccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005931          154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN--KDLALQYNKDGYTPLHLAAINGRVKILVAFLS  231 (669)
Q Consensus       154 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g--~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~  231 (669)
                                  .+.....+..|.||||+|+..|+.+++++|+++|  ++++.. +..|.||||.|+..|+.++++.|++
T Consensus        62 ------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~  128 (228)
T 2dzn_A           62 ------------VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIE  128 (228)
T ss_dssp             ------------CCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ------------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccC-CcCCCCHHHHHHHcCCHhHHHHHHH
Confidence                        2222225778999999999999999999999998  777765 8899999999999999999998887


Q ss_pred             cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccC
Q 005931          232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNH  311 (669)
Q Consensus       232 ~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~  311 (669)
                      . +.+++..|..|+||||+|+..|+.+++++|++.+ ..+++.+|..|+||||+|+..++.+++++|+++.|+|++.+|.
T Consensus       129 ~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~  206 (228)
T 2dzn_A          129 N-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN  206 (228)
T ss_dssp             T-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred             c-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC-cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Confidence            6 6889999999999999999999999999999862 2678999999999999999999999999999888999999999


Q ss_pred             CCCCHHHHHHHc
Q 005931          312 KNQTALDIIEQA  323 (669)
Q Consensus       312 ~g~T~L~~a~~~  323 (669)
                      .|+||+++|...
T Consensus       207 ~g~t~l~~A~~~  218 (228)
T 2dzn_A          207 KGAKAEDVALNE  218 (228)
T ss_dssp             TSCBGGGGCSST
T ss_pred             CCCcHHHHHHHH
Confidence            999999999643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=274.11  Aligned_cols=226  Identities=22%  Similarity=0.260  Sum_probs=145.7

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHH
Q 005931           34 LQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFS  113 (669)
Q Consensus        34 ~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~  113 (669)
                      +..|..|.|+||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+++.....+..|.||||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            34577777888888888888888888887766 66777778888888888888888888888777766555555666666


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHH
Q 005931          114 LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK  193 (669)
Q Consensus       114 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~  193 (669)
                      +|+..|+.+++++|++.+.+.+                                   ..+..|.||||+|+..|+.++++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~~-----------------------------------~~~~~g~t~l~~A~~~~~~~~~~  126 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADPS-----------------------------------LIDGEGCSCIHLAAQFGHTSIVA  126 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-----------------------------------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCc-----------------------------------ccCCCCCCHHHHHHHcCHHHHHH
Confidence            6666666666666666554433                                   33445555555555555555666


Q ss_pred             HHHhcCCccccccCCCCChHHHHHHHcCC-HHHHHHHHhcCCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCC
Q 005931          194 LLLNHNKDLALQYNKDGYTPLHLAAINGR-VKILVAFLSSSPASFDRLTT-YGETVFHLAVRFDKYNAFKFLAESFNTCL  271 (669)
Q Consensus       194 ~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~-~e~v~~LL~~~~~~i~~~d~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~  271 (669)
                      +|+++|++++.. +..|.||||.|+..++ .++ ..+|...+.+++..+. .|.||||+|+.+++.+++++|++.  +.+
T Consensus       127 ~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~-~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~  202 (240)
T 3eu9_A          127 YLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDP-TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--GAN  202 (240)
T ss_dssp             HHHHTTCCTTCC-CTTSCCHHHHHHHHCCSSTT-HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--TCC
T ss_pred             HHHhcCCCcccc-CCCCCcHHHHHHHhCChHHH-HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--CCC
Confidence            666555555543 5556666666665444 333 3333334455555554 566666666666666666666665  455


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          272 FHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       272 in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      ++.+|..|.||||+|+..++.+++++|+
T Consensus       203 ~~~~~~~g~t~l~~A~~~~~~~~v~~L~  230 (240)
T 3eu9_A          203 VDAQNIKGESALDLAKQRKNVWMINHLQ  230 (240)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            5666666666666666666666666666

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-33  Score=288.76  Aligned_cols=277  Identities=21%  Similarity=0.226  Sum_probs=190.7

Q ss_pred             HHHHhCCHHHHHHHHcCcch---h----hhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHH
Q 005931           11 EAIVRNDKQALINLVGCSNK---R----ILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC   83 (669)
Q Consensus        11 ~Ai~~gd~~~l~~ll~~~~~---~----~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~   83 (669)
                      .++..+..+.++.++.....   .    .....+..|.|+||.||..|+.++|++|++.+.+ ++..|..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHH
Confidence            35677777778777772211   0    0111134567888888888888888888888777 67777788888888888


Q ss_pred             cCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931           84 QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE  163 (669)
Q Consensus        84 ~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  163 (669)
                      .|+.+++++|++.|+++... +..|.||||+|+..|+.+++++|++++.+.+                            
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~----------------------------  133 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAHVG----------------------------  133 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------------------------
T ss_pred             cCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC----------------------------
Confidence            88888888888887776543 6667777777777777766666666654433                            


Q ss_pred             cCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc-CCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 005931          164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH-NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT  242 (669)
Q Consensus       164 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~-g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~  242 (669)
                             ..|..|.||||+|+..++.++++.++.. +.++... +..+.++++        ..+..++..........+.
T Consensus       134 -------~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          134 -------AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA-RKEEERIML--------RDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             -------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHH--------HHHHHHHHHTCCCCCCCTT
T ss_pred             -------CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhh-hhhhhhHHH--------HHHHHHHhccCcchhhhcC
Confidence                   3344555555555555555555554432 3332221 111222222        2235566666666666778


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHH
Q 005931          243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQ  322 (669)
Q Consensus       243 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~  322 (669)
                      .|.||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..|+.+++++|+ +.|+|++.+|..|+|||++|.+
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~--g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQA--RYDVNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHH
Confidence            899999999999999999999986  6778889999999999999999999999999 6788999999999999999843


Q ss_pred             cCCCchHHHHHHHHHHhC
Q 005931          323 AGTNDDATSLKKLFKTAG  340 (669)
Q Consensus       323 ~~~~~~~~~l~~~l~~~~  340 (669)
                          +....+.++++...
T Consensus       275 ----~~~~~l~~l~~~~~  288 (299)
T 1s70_B          275 ----DILGYLEELQKKQN  288 (299)
T ss_dssp             ----GGGHHHHHHHHHTT
T ss_pred             ----HHHHHHHHHHHHHh
Confidence                34555555555543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-33  Score=291.21  Aligned_cols=243  Identities=19%  Similarity=0.224  Sum_probs=165.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCC
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN   86 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~   86 (669)
                      ..|+.|+..|+.+.++.|++ . +..++.+|..|.||||+||..|+.++|++|++.+++ ++..|..|.||||+|+..|+
T Consensus        42 t~l~~A~~~g~~~~v~~Ll~-~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~  118 (299)
T 1s70_B           42 AVFLAACSSGDTEEVLRLLE-R-GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGY  118 (299)
T ss_dssp             HHHHHHHHHTCHHHHHHHHH-H-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred             cHHHHHHHcCCHHHHHHHHH-c-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCC
Confidence            45999999999999999998 3 355788899999999999999999999999999988 78899999999999999999


Q ss_pred             HHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 005931           87 HEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRP  166 (669)
Q Consensus        87 ~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~  166 (669)
                      .+++++|+++|+++... +..|.||||+|+..++.+++++++.............+.+++        ...+..++..+.
T Consensus       119 ~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~  189 (299)
T 1s70_B          119 LDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--------LRDARQWLNSGH  189 (299)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCCCCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH--------HHHHHHHHhccC
Confidence            99999999999987655 889999999999999999999888643221100000011111        122223333333


Q ss_pred             cccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCc
Q 005931          167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGET  246 (669)
Q Consensus       167 ~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t  246 (669)
                      ......                                  +..|.||||+|+..|+.++++.|+.. +.+++..|..|+|
T Consensus       190 ~~~~~~----------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~t  234 (299)
T 1s70_B          190 INDVRH----------------------------------AKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWT  234 (299)
T ss_dssp             CCCCCC----------------------------------TTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCC
T ss_pred             cchhhh----------------------------------cCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCc
Confidence            332333                                  44455555555555555554444432 3455555555556


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          247 VFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       247 ~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      |||+|+.+|+.+++++|++.  +++++.+|..|+||||+|+.. ..+.++.|+
T Consensus       235 pL~~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~  284 (299)
T 1s70_B          235 PLHAAAHWGKEEACRILVEN--LCDMEAVNKVGQTAFDVADED-ILGYLEELQ  284 (299)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCTTTSCCSG-GGHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHH-HHHHHHHHH
Confidence            66666666666666666654  445555666666666666432 333333333

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=271.70  Aligned_cols=220  Identities=25%  Similarity=0.232  Sum_probs=156.1

Q ss_pred             HHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCH
Q 005931            8 NLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNH   87 (669)
Q Consensus         8 ~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~   87 (669)
                      +|+.|+..|+.+.++.+++ .+ ..++.++..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.
T Consensus        12 ~l~~A~~~g~~~~~~~Ll~-~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~   89 (240)
T 3eu9_A           12 DIVKATQYGIYERCRELVE-AG-YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL   89 (240)
T ss_dssp             CHHHHHHTTCHHHHHHHHH-TT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred             HHHHHHHcCChHHHHHHHH-cC-CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence            4999999999999999999 33 557888999999999999999999999999999987667777799999999999999


Q ss_pred             HHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCC-HHHHHHHHhcCC
Q 005931           88 EVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH-TDIAREILEVRP  166 (669)
Q Consensus        88 eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~-~~iv~~Ll~~~~  166 (669)
                      +++++|++.|+++... +..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..++ .++++.|++.+.
T Consensus        90 ~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~  167 (240)
T 3eu9_A           90 SMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV  167 (240)
T ss_dssp             HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCSSTTHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCChHHHHHHHHhcCC
Confidence            9999999999887654 7888899999999888888888888776544 334445555555554333 445555555444


Q ss_pred             cccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 005931          167 RFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS  232 (669)
Q Consensus       167 ~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~  232 (669)
                      +.....+..|.||||+|+..|+.+++++|+++|++++.. |..|.|||++|+..|+.++++.|++.
T Consensus       168 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            432221124455555555555555555555555544433 44445555555555555544444443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=286.08  Aligned_cols=216  Identities=24%  Similarity=0.302  Sum_probs=118.4

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHhCCcc-------ccccCCCCCcHHHHHHHcCCH-HHHHHHHhhCCccccccCC
Q 005931           35 QRDASLNTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNH-EVSAFLMEANPTVATKLNH  106 (669)
Q Consensus        35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~-------~~~~n~~g~TpLh~Aa~~g~~-eivk~Ll~~~~~~~~~~~~  106 (669)
                      .+|..+.++|+.||..|+.++|++|++.+.+.       .+..+..|.||||.|+..++. .+++.|++.|++++.. |.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~-d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT-SQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC-CT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc-CC
Confidence            45777788999999999999999998877542       345566778888888877665 3777788877776544 67


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhc
Q 005931          107 ESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI  186 (669)
Q Consensus       107 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  186 (669)
                      +|.||||+|+..|+.+++++|++.+.+.. ..+..|.||++.|+..++.++++.|++.+.+. +..|..|.||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence            77777777777777777777777666554 34444566666666666666666666655543 45555666666666666


Q ss_pred             CCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcC
Q 005931          187 GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD  255 (669)
Q Consensus       187 g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~  255 (669)
                      |+.+++++|+++|++++.. +..|.||||+|+..|+.++++.|++. +++++.+|..|+||||+|++++
T Consensus       163 g~~~~v~~Ll~~gadvn~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          163 GHHELVALLLQHGASINAS-NNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCTTC
T ss_pred             CCHHHHHHHHHCCCCCCcc-ccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHhCC
Confidence            6666666666666655544 55556666666665555555555443 3555555555555555555444

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.2e-32  Score=282.19  Aligned_cols=208  Identities=20%  Similarity=0.228  Sum_probs=129.8

Q ss_pred             HHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHH
Q 005931           12 AIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSA   91 (669)
Q Consensus        12 Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk   91 (669)
                      ++...+.+.+.+++...   .++.+|..|.||||+||..|+.++|++|++.+++ ++..  +|.||||+|+..|+.++++
T Consensus         6 ~i~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             TGGGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHH
T ss_pred             HHHhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHH
Confidence            35667777777777622   3567778888888888888888888888887766 4444  3778888888888888888


Q ss_pred             HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCC-CcHHHHHHHcCCHHHHHHHHhcCCcccC
Q 005931           92 FLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVE-STPIYLAISRGHTDIAREILEVRPRFAG  170 (669)
Q Consensus        92 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~  170 (669)
                      +|+++|+++... +..|.||||+|+..|+.+++++|++++.+.+ ..+..| .||||.|+..|+.+++++|++.++....
T Consensus        80 ~Ll~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  157 (285)
T 3kea_A           80 ILLFSGLDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD  157 (285)
T ss_dssp             HHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC
T ss_pred             HHHHCCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc
Confidence            888877776543 6677777777777777777777777665554 333334 4555555555555555555555544311


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChH-HHHHHHcCCHHHHHHHH
Q 005931          171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTP-LHLAAINGRVKILVAFL  230 (669)
Q Consensus       171 ~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tp-Lh~Aa~~g~~e~v~~LL  230 (669)
                      .  ..|.||||+|+..|+.+++++|+++|++++.. |..|.|| ||+|+..|+.++++.|+
T Consensus       158 ~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll  215 (285)
T 3kea_A          158 L--AILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALF  215 (285)
T ss_dssp             C--STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHT
T ss_pred             c--cCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHH
Confidence            1  14555555555555555555555555554443 4444444 45555444444444433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.1e-32  Score=267.27  Aligned_cols=210  Identities=21%  Similarity=0.220  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcC
Q 005931           51 GHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQ  130 (669)
Q Consensus        51 g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~  130 (669)
                      |+.+++++|++.++++.+..|..|.||||+|+..|+.+++++|++.|+++... +..|                      
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g----------------------   58 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMG----------------------   58 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTS----------------------
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCC----------------------
Confidence            44555555555555544444555666666666666666666666555554332 4444                      


Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCC
Q 005931          131 SWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDG  210 (669)
Q Consensus       131 ~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g  210 (669)
                                  .||||.|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|+++|++++.. +..|
T Consensus        59 ------------~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g  125 (223)
T 2f8y_A           59 ------------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLG  125 (223)
T ss_dssp             ------------CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTS
T ss_pred             ------------CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-CCCC
Confidence                        445555555555555555555444344555666667777777777777777777777666654 6667


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC
Q 005931          211 YTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK  290 (669)
Q Consensus       211 ~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~  290 (669)
                      .||||+|+..|+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++.  +.+++.+|..|.||||+|+..+
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~  202 (223)
T 2f8y_A          126 KSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDH--FANRDITDHMDRLPRDIAQERM  202 (223)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc--CCCCccccccCCCHHHHHHHhc
Confidence            7777777777777776666655 466667777777777777777777777777775  4566667777777777777777


Q ss_pred             CHHHHHHHH
Q 005931          291 NYQFVEYII  299 (669)
Q Consensus       291 ~~~iv~~Ll  299 (669)
                      +.+++++|+
T Consensus       203 ~~~i~~~L~  211 (223)
T 2f8y_A          203 HHDIVRLLD  211 (223)
T ss_dssp             CHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            777777777

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.6e-32  Score=279.77  Aligned_cols=249  Identities=15%  Similarity=0.125  Sum_probs=208.9

Q ss_pred             cCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHc
Q 005931           50 FGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLIN  129 (669)
Q Consensus        50 ~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~  129 (669)
                      ..+.+-+..++..+ + ++.+|..|.||||+|+..|+.+++++|++.|+++...   +|.||||+|+..|+.+++++|++
T Consensus         9 ~~~~~~v~~lL~~~-~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~   83 (285)
T 3kea_A            9 TWKSKQLKSFLSSK-D-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLF   83 (285)
T ss_dssp             GCCHHHHHHHHHST-T-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHH
T ss_pred             hcCHHHHHHHHHhC-C-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHH
Confidence            34444444444443 3 6788999999999999999999999999999987655   58999999999999999999999


Q ss_pred             CCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCC-ChHHHHHHhcCCHHHHHHHHhcCCccccccCC
Q 005931          130 QSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG-FSPLHYASSIGNVNMTKLLLNHNKDLALQYNK  208 (669)
Q Consensus       130 ~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~  208 (669)
                      ++.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..| .||||+|+..|+.+++++|+++|++...  ..
T Consensus        84 ~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~  159 (285)
T 3kea_A           84 SGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LA  159 (285)
T ss_dssp             TTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CS
T ss_pred             CCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--cc
Confidence            998876 46778999999999999999999999998775 6778888 7999999999999999999999987732  23


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcH-HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHH
Q 005931          209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETV-FHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAV  287 (669)
Q Consensus       209 ~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~-Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~  287 (669)
                      .|.||||+|+..|+.++++.|+.. +.+++..|..|+|| ||+|+..++.+++++|++.  +++++.+|       +.|+
T Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~--gad~~~~~-------~~a~  229 (285)
T 3kea_A          160 ILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY--DINIYSAN-------LENV  229 (285)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS--CBCSTTTT-------GGGG
T ss_pred             CCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc--CCCCCCCC-------hhhh
Confidence            889999999999999999888877 57889999999997 9999999999999999986  66777776       4677


Q ss_pred             HcCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931          288 LRKNYQFVEYIIKETVLDIYCRNHKNQTALDII  320 (669)
Q Consensus       288 ~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a  320 (669)
                      ..++.+++++|+ +.|++++..+..  ..++++
T Consensus       230 ~~~~~~iv~~Ll-~~g~~~~~~~~~--~~~~~~  259 (285)
T 3kea_A          230 LLDDAEIAKMII-EKHVEYKSDSYT--KDLDIV  259 (285)
T ss_dssp             TTTCHHHHHHHH-HHHHHHTTCTTT--TTCHHH
T ss_pred             hcCCHHHHHHHH-HcCCCCCCcccc--chHHHH
Confidence            889999999999 667777655543  334444

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.9e-33  Score=280.43  Aligned_cols=223  Identities=23%  Similarity=0.276  Sum_probs=146.1

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHH
Q 005931           69 AENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYL  148 (669)
Q Consensus        69 ~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~  148 (669)
                      .+|.++.+||+.||+.|+.++|++|++.++.......                           ......+..+.|||+.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~---------------------------~~~~~~~~~~~t~L~~   58 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE---------------------------DTVSAADPEFCHPLCQ   58 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc---------------------------ccccccCccCCCHHHH
Confidence            4566778899999999999999999988765422100                           0001223345667777


Q ss_pred             HHHcCCH-HHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHH
Q 005931          149 AISRGHT-DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILV  227 (669)
Q Consensus       149 A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~  227 (669)
                      |+..+.. .+++.|++.+.+. +..|.+|.||||+|+..|+.+++++|++.++++... +.+|.||+|.|+..++.++++
T Consensus        59 a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~  136 (269)
T 4b93_B           59 CPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVK  136 (269)
T ss_dssp             ----------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHH
Confidence            6665554 3566666666553 666777888888888888888888888888877765 777888888888888888777


Q ss_pred             HHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccc
Q 005931          228 AFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIY  307 (669)
Q Consensus       228 ~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~  307 (669)
                      .|+.. +.+++.+|..|+||||+|+..|+.+++++|++.  +.++|.+|..|+||||+|+..|+.++|++|+ +.|+|++
T Consensus       137 ~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~--gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll-~~Gad~~  212 (269)
T 4b93_B          137 CLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQH--GASINASNNKGNTALHEAVIEKHVFVVELLL-LHGASVQ  212 (269)
T ss_dssp             HHHHT-TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-HTTCCSC
T ss_pred             HHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC--CCCCCccccCCCcHHHHHHHcCCHHHHHHHH-HCCCCCC
Confidence            66654 467788888888888888888888888888875  5677888888888888888888888888888 5677888


Q ss_pred             cccCCCCCHHHHHHHcC
Q 005931          308 CRNHKNQTALDIIEQAG  324 (669)
Q Consensus       308 ~~n~~g~T~L~~a~~~~  324 (669)
                      .+|.+|+|||++|.+.+
T Consensus       213 ~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          213 VLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             CCCTTSCCSGGGSCTTC
T ss_pred             CcCCCCCCHHHHHHhCC
Confidence            88888888888886543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.98  E-value=1.3e-31  Score=263.60  Aligned_cols=211  Identities=19%  Similarity=0.236  Sum_probs=145.9

Q ss_pred             CCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931           16 NDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLME   95 (669)
Q Consensus        16 gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~   95 (669)
                      |+.+.++.|++ .+.......|..|.||||+||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIY-QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEE-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHH-cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            56677778887 54455555689999999999999999999999999988 78899999999999999999999999999


Q ss_pred             hCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCC
Q 005931           96 ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKN  175 (669)
Q Consensus        96 ~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  175 (669)
                      .++......+..|.||||+|+..|+.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++.+.+. +..|..
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  157 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR  157 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            9885555567888888888888888888888888766544 33444555555555555555555555554442 344455


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005931          176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS  231 (669)
Q Consensus       176 g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~  231 (669)
                      |.||||+|+..|+.+++++|+++|++++.. |..|.|||++|+.+|+.++++.|++
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~~~L~~  212 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVRLLDE  212 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCccc-cccCCCHHHHHHHhcchHHHHHHHH
Confidence            555555555555555555555555554443 4445555555555555555444443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=1.1e-33  Score=295.88  Aligned_cols=263  Identities=14%  Similarity=0.071  Sum_probs=203.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccc--------------
Q 005931           38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATK--------------  103 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~--------------  103 (669)
                      ..+.+|+|    ....++|++|++.+.+ ++..+..|.|+++     |+.++|+.|+++|.+....              
T Consensus        21 ~~~~~~~~----~~~~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~   90 (327)
T 1sw6_A           21 DRTAGPII----TFTHDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN   90 (327)
T ss_dssp             ----CCEE----ECCTTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC------------------
T ss_pred             cccccchh----hhcCchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhccccccc
Confidence            33445555    4566789999999988 7788889999987     9999999999988664321              


Q ss_pred             --cCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHH
Q 005931          104 --LNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLH  181 (669)
Q Consensus       104 --~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  181 (669)
                        ......+.+|+|+..+..+++++|++.+.+.+...+..|.||||+|+..|+.+++++|++.+.+. +..|.+|.||||
T Consensus        91 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh  169 (327)
T 1sw6_A           91 SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLV  169 (327)
T ss_dssp             -------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHH
T ss_pred             ccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHH
Confidence              01112234578888888899999999998887547888999999999999999999999998775 788999999999


Q ss_pred             HHHhcCC---HHHHHHHHhcC-CccccccCCCCChHHHHHHH----cCCHHHHHHHHhcC-------------------C
Q 005931          182 YASSIGN---VNMTKLLLNHN-KDLALQYNKDGYTPLHLAAI----NGRVKILVAFLSSS-------------------P  234 (669)
Q Consensus       182 ~Aa~~g~---~eiv~~Ll~~g-~~~~~~~~~~g~tpLh~Aa~----~g~~e~v~~LL~~~-------------------~  234 (669)
                      +|+..|+   .++++.|++.+ ++++.. |..|.||||+|+.    .|+.++++.|++..                   +
T Consensus       170 ~A~~~g~~~~~~~~~~ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g  248 (327)
T 1sw6_A          170 KAVKSVNNYDSGTFEALLDYLYPCLILE-DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE  248 (327)
T ss_dssp             HHHHSSHHHHTTCHHHHHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----
T ss_pred             HHHHhcccccHHHHHHHHHhhhccccCC-CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhccc
Confidence            9999998   67888888877 556654 9999999999999    89999999988763                   7


Q ss_pred             CCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCC
Q 005931          235 ASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQ  314 (669)
Q Consensus       235 ~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~  314 (669)
                      .+++..+..|.||||.|+.      +++|++.    ++|.+|..|+||||+|+..|+.+++++|+ +.|+|++.+|..|+
T Consensus       249 ~~~~~~~~~g~t~L~~a~~------~~~Ll~~----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~Gad~~~~d~~G~  317 (327)
T 1sw6_A          249 SKPNDKNGERKDSILENLD------LKWIIAN----MLNAQDSNGDTCLNIAARLGNISIVDALL-DYGADPFIANKSGL  317 (327)
T ss_dssp             -----------CHHHHHCS------HHHHHHH----TTTCCCTTSCCHHHHHHHHCCHHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             CCcccccccCCChhHHHHH------HHHHHHh----CCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCC
Confidence            8899999999999999985      8999986    58899999999999999999999999999 77999999999999


Q ss_pred             CHHHHHHHc
Q 005931          315 TALDIIEQA  323 (669)
Q Consensus       315 T~L~~a~~~  323 (669)
                      ||||+|++.
T Consensus       318 TpL~~A~~~  326 (327)
T 1sw6_A          318 RPVDFGAGL  326 (327)
T ss_dssp             CGGGGTCC-
T ss_pred             CHHHHHHhc
Confidence            999998754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1e-31  Score=267.06  Aligned_cols=220  Identities=23%  Similarity=0.254  Sum_probs=137.4

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHhCCc---cccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcH
Q 005931           35 QRDASLNTALHLAARFGHVELVTEITKLCPE---LVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSA  111 (669)
Q Consensus        35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~---~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tp  111 (669)
                      ++|..|.||||+|+..|+.+++++|++.+..   .++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC-CTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCH
Confidence            4578888888888888888888888877653   36777888888888888888888888888888776554 6777888


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHH
Q 005931          112 FSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNM  191 (669)
Q Consensus       112 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~ei  191 (669)
                      ||+|+..|+.+++++|++.+.....                             ....+..+..|.||||+|+..|+.++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~  132 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHL-----------------------------HSILKATNYNGHTCLHLASIHGYLGI  132 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSS-----------------------------SCGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhH-----------------------------HHHhhccCCCCCCHHHHHHHcCCHHH
Confidence            8888888888888887776543210                             11124456667777777777777777


Q ss_pred             HHHHHhcCCccccccCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCC
Q 005931          192 TKLLLNHNKDLALQYNK-DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTC  270 (669)
Q Consensus       192 v~~Ll~~g~~~~~~~~~-~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~  270 (669)
                      +++|+++|++++.. +. .|.||||+|+..|+.++++.|+.. +++++..|..|.||||+|+.+++.+++++|++.+...
T Consensus       133 v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          133 VELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             HHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence            77777777766654 33 566666666666665555555443 3444544555555555555555555555555443322


Q ss_pred             CCccCCCCCCcHHHHH
Q 005931          271 LFHGQDQFGNTVLHLA  286 (669)
Q Consensus       271 ~in~~D~~G~TpLh~A  286 (669)
                      ....++..|.||.+.+
T Consensus       211 ~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          211 LQMLPESEDEESYDTE  226 (236)
T ss_dssp             GSSCCCCCTTTCCCCC
T ss_pred             hhcCCccchHHHHhhh
Confidence            2233444444444433

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.8e-31  Score=279.07  Aligned_cols=252  Identities=10%  Similarity=0.032  Sum_probs=198.8

Q ss_pred             HHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccc-----------------cCCCCCcHHHH
Q 005931           18 KQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAA-----------------ENEKLETPLHE   80 (669)
Q Consensus        18 ~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~-----------------~n~~g~TpLh~   80 (669)
                      .+.++.|++  .+..++.++..|.|+++     |+.++|+.|++.+.+ ++.                 +.....+.+|.
T Consensus        32 ~dlv~~ll~--~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  103 (327)
T 1sw6_A           32 HDLTSDFLS--SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV  103 (327)
T ss_dssp             TTCCCSTTT--SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------------
T ss_pred             CchHHHHhh--CCcccccCCCCCCcccC-----chhHHHHHHHHhccC-CccccchHhhhcccccccccccCCccchhHH
Confidence            344555555  34667888999999988     999999999998754 211                 11112234588


Q ss_pred             HHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCC---HHH
Q 005931           81 ACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH---TDI  157 (669)
Q Consensus        81 Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~---~~i  157 (669)
                      |+..+..+++++|++.|.+++...+..|.||||+|+..|+.++|++|++++.+.+ ..+..|.||||+|+..|+   .++
T Consensus       104 a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~  182 (327)
T 1sw6_A          104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGT  182 (327)
T ss_dssp             CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTC
T ss_pred             HHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHH
Confidence            8888899999999999999887469999999999999999999999999998887 677889999999999998   677


Q ss_pred             HHHHHhcCCcccCCCCCCCChHHHHHHh----cCCHHHHHHHHhc--------------------CCccccccCCCCChH
Q 005931          158 AREILEVRPRFAGKTDKNGFSPLHYASS----IGNVNMTKLLLNH--------------------NKDLALQYNKDGYTP  213 (669)
Q Consensus       158 v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~----~g~~eiv~~Ll~~--------------------g~~~~~~~~~~g~tp  213 (669)
                      ++.|++......+..|..|.||||+|+.    .|+.+++++|++.                    |++++.. +..|.||
T Consensus       183 ~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~-~~~g~t~  261 (327)
T 1sw6_A          183 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK-NGERKDS  261 (327)
T ss_dssp             HHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CH
T ss_pred             HHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc-cccCCCh
Confidence            8888887755567889999999999999    8999999999987                    7777765 8999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC
Q 005931          214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK  290 (669)
Q Consensus       214 Lh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~  290 (669)
                      ||.|+.      ++.|+..   +++.+|..|+||||+|+.+|+.+++++|++.  +++++.+|.+|+||||+|+..|
T Consensus       262 L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          262 ILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDY--GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT--TCCTTCCCTTSCCGGGGTCC--
T ss_pred             hHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHhcC
Confidence            999985      6777776   5889999999999999999999999999997  7789999999999999998764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.5e-29  Score=248.99  Aligned_cols=205  Identities=24%  Similarity=0.260  Sum_probs=168.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHh-CCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccc----cccCCCCCcHHH
Q 005931           39 SLNTALHLAARFGHVELVTEITKL-CPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA----TKLNHESQSAFS  113 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~-~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~----~~~~~~g~tpL~  113 (669)
                      .|+||||+||..|+.++|++|++. +.+ ++.+|..|+||||+|+..|+.+++++|++.+++..    ...+..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            589999999999999999999998 555 88899999999999999999999999999998863    234678999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHH
Q 005931          114 LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK  193 (669)
Q Consensus       114 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~  193 (669)
                      +|+..|+.+++++|++++.+.+.. +..  +.+.                   ...+..|..|.||||+|+..|+.++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~~--~~~~-------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~  138 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSAR-ATG--SVFH-------------------YRPHNLIYYGEHPLSFAACVGSEEIVR  138 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCC-CCS--GGGS-------------------CCTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcc-cCC--ccee-------------------ecccccccCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999988776532 211  1110                   112445678999999999999999999


Q ss_pred             HHHhcCCccccccCCCCChHHHHHHHcCCHHHH----HHHHhcCCCCc------ccccCCCCcHHHHHHHcCCHHHHHHH
Q 005931          194 LLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL----VAFLSSSPASF------DRLTTYGETVFHLAVRFDKYNAFKFL  263 (669)
Q Consensus       194 ~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v----~~LL~~~~~~i------~~~d~~g~t~Lh~Av~~~~~~iv~~L  263 (669)
                      +|+++|++++.. |.+|.||||+|+..|+.+++    +.|+..+ .+.      +..|..|+||||+|++.|+.+++++|
T Consensus       139 ~Ll~~ga~~~~~-d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~L  216 (232)
T 2rfa_A          139 LLIEHGADIRAQ-DSLGNTVLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL  216 (232)
T ss_dssp             HHHHTTCCTTCC-CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHCCCCCCCC-CCCCCCHHHHHHHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999988876 88899999999999998877    5565554 444      57888999999999999999999999


Q ss_pred             HHhcC
Q 005931          264 AESFN  268 (669)
Q Consensus       264 l~~~~  268 (669)
                      ++++.
T Consensus       217 l~~g~  221 (232)
T 2rfa_A          217 MQKRK  221 (232)
T ss_dssp             HHHHH
T ss_pred             HhcCc
Confidence            98744

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.9e-29  Score=241.67  Aligned_cols=192  Identities=20%  Similarity=0.236  Sum_probs=134.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931           38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR  117 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~  117 (669)
                      ..+.|+||.||..|+.+.++.|++.++..++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHH
Confidence            456788888888888888888888777457777888888888888888888888888887776544 6677777777777


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCC-----HHHH
Q 005931          118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN-----VNMT  192 (669)
Q Consensus       118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~-----~eiv  192 (669)
                      .|+.+++++|++.+.......+..|.||||.|+..|+.+++++|++.++...+..|..|.||||+|+..++     .+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            77777777777443322224555566667766666666666666666644445666666777777766665     6666


Q ss_pred             HHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005931          193 KLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS  231 (669)
Q Consensus       193 ~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~  231 (669)
                      ++|+++|++++.. |..|.||||+|+.+|+.++++.|++
T Consensus       162 ~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          162 KLLMENGADQSIK-DNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHCCCCCCcc-CCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            7777666666654 6666666666666666666666654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=7.4e-29  Score=245.58  Aligned_cols=198  Identities=20%  Similarity=0.208  Sum_probs=145.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhh-CCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHH
Q 005931           73 KLETPLHEACCQGNHEVSAFLMEA-NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAIS  151 (669)
Q Consensus        73 ~g~TpLh~Aa~~g~~eivk~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~  151 (669)
                      .|+||||+|++.|+.+++++|++. +.++... |..|.||||+|+..|+.+++++|++.+.+.....             
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-------------   67 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEP-------------   67 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC-------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc-------------
Confidence            478888888888888888888887 6555443 7777888888888888888888877665432100             


Q ss_pred             cCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccc------------cCCCCChHHHHHHH
Q 005931          152 RGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQ------------YNKDGYTPLHLAAI  219 (669)
Q Consensus       152 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~------------~~~~g~tpLh~Aa~  219 (669)
                                       .+..|..|.||||+|+..|+.+++++|+++|++++..            .+..|.||||+|+.
T Consensus        68 -----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  130 (232)
T 2rfa_A           68 -----------------MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC  130 (232)
T ss_dssp             -----------------CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHH
T ss_pred             -----------------ccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHH
Confidence                             1233445566666666666666666666666555543            13478999999999


Q ss_pred             cCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHH----HHHHHhcCCCC----CccCCCCCCcHHHHHHHcCC
Q 005931          220 NGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF----KFLAESFNTCL----FHGQDQFGNTVLHLAVLRKN  291 (669)
Q Consensus       220 ~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv----~~Ll~~~~~~~----in~~D~~G~TpLh~A~~~~~  291 (669)
                      .|+.++++.|++. +.+++.+|..|+||||+|+..++.+++    ++|++.+....    .+.+|..|+||||+|+..|+
T Consensus       131 ~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          131 VGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            9999998888865 578888999999999999999998888    88888643211    15788999999999999999


Q ss_pred             HHHHHHHHHhc
Q 005931          292 YQFVEYIIKET  302 (669)
Q Consensus       292 ~~iv~~Ll~~~  302 (669)
                      .+++++|++++
T Consensus       210 ~~~v~~Ll~~g  220 (232)
T 2rfa_A          210 IVMFQHLMQKR  220 (232)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=1.1e-28  Score=238.57  Aligned_cols=189  Identities=24%  Similarity=0.321  Sum_probs=126.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc
Q 005931          141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN  220 (669)
Q Consensus       141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~  220 (669)
                      .+.||||.|+..|+.+.++.|+..++...+..|.+|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~   82 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHc
Confidence            35566666666666666666666666445566666777777777777777777777777766654 66667777777777


Q ss_pred             CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC-----HHHH
Q 005931          221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN-----YQFV  295 (669)
Q Consensus       221 g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~-----~~iv  295 (669)
                      |+.++++.|+...+.+++..+..|.||||+|+..++.+++++|++.+ ..+++.+|..|+||||+|+..++     .+++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG-REDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC-CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            77777777766666666666777777777777777777777777652 24566667777777777776665     6677


Q ss_pred             HHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHH
Q 005931          296 EYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL  332 (669)
Q Consensus       296 ~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l  332 (669)
                      ++|+ +.|+|++.+|..|+|||++|...++.+.++.|
T Consensus       162 ~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L  197 (201)
T 3hra_A          162 KLLM-ENGADQSIKDNSGRTAMDYANQKGYTEISKIL  197 (201)
T ss_dssp             HHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHH-HCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence            7777 45667777777777777777766655544333

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=7.3e-30  Score=253.69  Aligned_cols=214  Identities=20%  Similarity=0.212  Sum_probs=154.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCCc---cccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHH
Q 005931           70 ENEKLETPLHEACCQGNHEVSAFLMEANPT---VATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPI  146 (669)
Q Consensus        70 ~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L  146 (669)
                      .|..|.||||+|+..|+.+++++|++.+..   .....+..|.||||+|                               
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-------------------------------   52 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA-------------------------------   52 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH-------------------------------
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHH-------------------------------
Confidence            455566666666666666666666655432   1122244444444444                               


Q ss_pred             HHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCcc-----ccccCCCCChHHHHHHHcC
Q 005931          147 YLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDL-----ALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       147 ~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~-----~~~~~~~g~tpLh~Aa~~g  221 (669)
                         +..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++++.     ....+..|.||||+|+..|
T Consensus        53 ---~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  128 (236)
T 1ikn_D           53 ---VITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG  128 (236)
T ss_dssp             ---HHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT
T ss_pred             ---HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC
Confidence               4444445554444444432 445666777777777777777777777777542     2334888999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          222 RVKILVAFLSSSPASFDRLTT-YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      +.++++.|+..+ .+++..+. .|+||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+..++.+++++|+ 
T Consensus       129 ~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll-  204 (236)
T 1ikn_D          129 YLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC--GADVNRVTYQGYSPYQLTWGRPSTRIQQQLG-  204 (236)
T ss_dssp             CHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT--TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH-
T ss_pred             CHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccCCCCCHHHHHHccCchHHHHHHH-
Confidence            999999888765 78888887 999999999999999999999996  7788999999999999999999999999999 


Q ss_pred             hcCcccc--cccCCCCCHHHHHHH
Q 005931          301 ETVLDIY--CRNHKNQTALDIIEQ  322 (669)
Q Consensus       301 ~~~~d~~--~~n~~g~T~L~~a~~  322 (669)
                      +.|++..  ..+..|.||.+.+..
T Consensus       205 ~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          205 QLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             TTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             HcchhhhhcCCccchHHHHhhhcc
Confidence            6777766  888999999876543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=6.5e-29  Score=252.61  Aligned_cols=226  Identities=15%  Similarity=0.135  Sum_probs=144.9

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHh----CCcccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHhhCCcccc
Q 005931           33 LLQRDASLNTALHLAARFGHVELVTEITKL----CPELVA---AENEKLETPLHEACCQ---GNHEVSAFLMEANPTVAT  102 (669)
Q Consensus        33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~----~~~~~~---~~n~~g~TpLh~Aa~~---g~~eivk~Ll~~~~~~~~  102 (669)
                      .+..|..|.|+||.||..|+.++|+.|++.    +.++..   ..|..|.||||+|+..   |+.+++++|++.|++...
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            345689999999999999999999988874    333211   4578999999999987   999999999998865321


Q ss_pred             ----------ccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCC
Q 005931          103 ----------KLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKT  172 (669)
Q Consensus       103 ----------~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~  172 (669)
                                ..|..|.||||+|+..|+.+++++|++++.+.+.. +..+.                  .  ........
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~------------------~--~~~~~~~~  144 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDF------------------F--KKTKGRPG  144 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGG------------------G--SSCSSSCC
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-ccccc------------------c--cccccccc
Confidence                      13457778888888888888888888777665422 22110                  0  00011223


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHh---cCCccccccCCCCChHHHHHHHcCC---------HHHHHHHHhcCCCCcc--
Q 005931          173 DKNGFSPLHYASSIGNVNMTKLLLN---HNKDLALQYNKDGYTPLHLAAINGR---------VKILVAFLSSSPASFD--  238 (669)
Q Consensus       173 d~~g~t~Lh~Aa~~g~~eiv~~Ll~---~g~~~~~~~~~~g~tpLh~Aa~~g~---------~e~v~~LL~~~~~~i~--  238 (669)
                      +..|.||||+|+..|+.+++++|++   +|++++.. |.+|.||||+|+..|+         .++++.|+..+ .+++  
T Consensus       145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~-d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~  222 (273)
T 2pnn_A          145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR-DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPT  222 (273)
T ss_dssp             CCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceee-CCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccc
Confidence            3467777777777777777777777   67777664 7777777777777766         56666666543 4443  


Q ss_pred             -----cccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcH
Q 005931          239 -----RLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTV  282 (669)
Q Consensus       239 -----~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~Tp  282 (669)
                           ..|..|+||||+|+..|+.+++++|++.+.. +.......+.+|
T Consensus       223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-dp~~~~~~~~~~  270 (273)
T 2pnn_A          223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-EPECRHAAAHHH  270 (273)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC-Cchhhhhhhhhc
Confidence                 4677777777777777777777777776331 333344444444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.5e-28  Score=249.85  Aligned_cols=224  Identities=19%  Similarity=0.250  Sum_probs=168.8

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhh----CCcccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHcCCCcccc
Q 005931           67 VAAENEKLETPLHEACCQGNHEVSAFLMEA----NPTVAT---KLNHESQSAFSLACRQ---GHLDVVKLLINQSWLMEF  136 (669)
Q Consensus        67 ~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~----~~~~~~---~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~  136 (669)
                      .+..|..|.||||.|++.|+.++|+.|++.    +.++..   ..+..|.||||+|+..   |+.+++++|++.+.....
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            456788999999999999999999988874    333321   3477899999999976   889999999987654320


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCC--------
Q 005931          137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNK--------  208 (669)
Q Consensus       137 ~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~--------  208 (669)
                                           ++.+++..   ....|..|.||||+|+..|+.+++++|+++|++++.. +.        
T Consensus        86 ---------------------~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~  140 (273)
T 2pnn_A           86 ---------------------LKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDFFKKTK  140 (273)
T ss_dssp             ---------------------HHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGGGSSCS
T ss_pred             ---------------------hhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-cccccccccc
Confidence                                 12223321   1234678999999999999999999999999998876 44        


Q ss_pred             ------CCChHHHHHHHcCCHHHHHHHHhc--CCCCcccccCCCCcHHHHHHHcCC---------HHHHHHHHHhcCCCC
Q 005931          209 ------DGYTPLHLAAINGRVKILVAFLSS--SPASFDRLTTYGETVFHLAVRFDK---------YNAFKFLAESFNTCL  271 (669)
Q Consensus       209 ------~g~tpLh~Aa~~g~~e~v~~LL~~--~~~~i~~~d~~g~t~Lh~Av~~~~---------~~iv~~Ll~~~~~~~  271 (669)
                            .|.||||+|+..|+.++++.|+..  .+.+++.+|..|+||||+|+..++         .+++++|++.  +.+
T Consensus       141 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~--ga~  218 (273)
T 2pnn_A          141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL--GAK  218 (273)
T ss_dssp             SSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--HHH
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh--hhh
Confidence                  799999999999999999999985  678999999999999999999988         7999999987  344


Q ss_pred             Cc-------cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHH
Q 005931          272 FH-------GQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL  317 (669)
Q Consensus       272 in-------~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L  317 (669)
                      ++       .+|..|+||||+|+..|+.+++++|++.+..|+......+.+|-
T Consensus       219 ~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             cccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            44       58999999999999999999999999666668888887777664

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=1.7e-28  Score=247.01  Aligned_cols=204  Identities=19%  Similarity=0.170  Sum_probs=146.0

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHHhCCccccc----cCCCCCcHHHHHHHc---CCHHHHHHHHhhCCccccc----
Q 005931           39 SLNTALHLAARFGHVE----LVTEITKLCPELVAA----ENEKLETPLHEACCQ---GNHEVSAFLMEANPTVATK----  103 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e----~vk~Ll~~~~~~~~~----~n~~g~TpLh~Aa~~---g~~eivk~Ll~~~~~~~~~----  103 (669)
                      .|.||||.||..|+.+    ++++|++.+.+ ++.    +|..|.||||+|+..   |+.+++++|++.|++....    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            4789999999999997    55666778877 555    789999999999999   9999999999988776432    


Q ss_pred             ------cCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCC
Q 005931          104 ------LNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGF  177 (669)
Q Consensus       104 ------~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~  177 (669)
                            .|..|.||||+|+..|+.+++++|++++.+.+. .+..+.+                     +......|..|.
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~---------------------~~~~~~~~~~g~  137 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL-RACGRFF---------------------QKHQGTCFYFGE  137 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGG---------------------SCCSSSCCCSCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-ccccccc---------------------cccccccccCCC
Confidence                  235677888888888888888888877766542 2222110                     001122233477


Q ss_pred             hHHHHHHhcCCHHHHHHHHh---cCCccccccCCCCChHHHHHHH--cCCHH-------HHHHHHhcCCCCc-------c
Q 005931          178 SPLHYASSIGNVNMTKLLLN---HNKDLALQYNKDGYTPLHLAAI--NGRVK-------ILVAFLSSSPASF-------D  238 (669)
Q Consensus       178 t~Lh~Aa~~g~~eiv~~Ll~---~g~~~~~~~~~~g~tpLh~Aa~--~g~~e-------~v~~LL~~~~~~i-------~  238 (669)
                      ||||+|+..|+.+++++|++   +|++++.. |.+|.||||+|+.  .++.+       +++.|+..+ .++       +
T Consensus       138 tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~  215 (256)
T 2etb_A          138 LPLSLAACTKQWDVVTYLLENPHQPASLEAT-DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLEE  215 (256)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGGG
T ss_pred             CHHHHHHHcCCHHHHHHHHhccccCCCcCcc-CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCccccccccc
Confidence            77777777777777777777   77777765 7777777777777  66666       666666543 455       6


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931          239 RLTTYGETVFHLAVRFDKYNAFKFLAESF  267 (669)
Q Consensus       239 ~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~  267 (669)
                      .+|..|+||||+|+..|+.+++++|++++
T Consensus       216 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          216 ISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            77777888888888888888888887763

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=2.2e-28  Score=246.16  Aligned_cols=203  Identities=19%  Similarity=0.209  Sum_probs=160.2

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHhhCCcccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHcCCCccccccCCCC
Q 005931           73 KLETPLHEACCQGNHE----VSAFLMEANPTVAT---KLNHESQSAFSLACRQ---GHLDVVKLLINQSWLMEFEEDSVE  142 (669)
Q Consensus        73 ~g~TpLh~Aa~~g~~e----ivk~Ll~~~~~~~~---~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~~  142 (669)
                      .|+||||.|+..|+.+    ++++|++.+.++..   ..+..|.||||+|+..   |+.+++++|++.+.+.+...    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~----   76 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK----   76 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS----
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh----
Confidence            3789999999999997    66777778888766   3488899999999988   88999999988775543111    


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCC-------------
Q 005931          143 STPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKD-------------  209 (669)
Q Consensus       143 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~-------------  209 (669)
                                       .+++.   .....|..|.||||+|+..|+.+++++|+++|++++.. +..             
T Consensus        77 -----------------~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~  135 (256)
T 2etb_A           77 -----------------PLVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQKHQGTCFYF  135 (256)
T ss_dssp             -----------------CGGGC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGSCCSSSCCCS
T ss_pred             -----------------hhccc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-cccccccccccccccC
Confidence                             00111   01234567889999999999999999999999888875 444             


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhc--CCCCcccccCCCCcHHHHHHH--cCCHH-------HHHHHHHhcCCCCC------
Q 005931          210 GYTPLHLAAINGRVKILVAFLSS--SPASFDRLTTYGETVFHLAVR--FDKYN-------AFKFLAESFNTCLF------  272 (669)
Q Consensus       210 g~tpLh~Aa~~g~~e~v~~LL~~--~~~~i~~~d~~g~t~Lh~Av~--~~~~~-------iv~~Ll~~~~~~~i------  272 (669)
                      |.||||+|+..|+.++++.|++.  .+.+++.+|..|+||||+|+.  .++.+       ++++|++.  +.++      
T Consensus       136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~--ga~~~~~~~~  213 (256)
T 2etb_A          136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM--GARLCPTVQL  213 (256)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--HHHHSTTCCG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc--CCCccccccc
Confidence            88999999999999998888875  678888889999999999998  77877       88999886  4455      


Q ss_pred             -ccCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931          273 -HGQDQFGNTVLHLAVLRKNYQFVEYIIKET  302 (669)
Q Consensus       273 -n~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~  302 (669)
                       +.+|..|+||||+|+..|+.+++++|++++
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          214 EEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence             778889999999999999999999998443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=3e-27  Score=221.80  Aligned_cols=159  Identities=28%  Similarity=0.412  Sum_probs=122.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCH
Q 005931           42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL  121 (669)
Q Consensus        42 T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  121 (669)
                      +.|+.||+.|+.++|+.|++.|++ ++.+|..|+||||+|+..|+.+++++|++.|+++... |..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~-d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh-ccCCCCHHHHHHHcCCH
Confidence            468888888888888888888877 6788888888888888888888888888888877654 77888888888888888


Q ss_pred             HHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCc
Q 005931          122 DVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKD  201 (669)
Q Consensus       122 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~  201 (669)
                      +++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|.+|.||||+|+..|+.+++++|+++|++
T Consensus        84 ~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           84 EVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            88888888877665 45666778888888888888888888877664 66778888888888888888888888888887


Q ss_pred             ccc
Q 005931          202 LAL  204 (669)
Q Consensus       202 ~~~  204 (669)
                      +..
T Consensus       162 ie~  164 (169)
T 4gpm_A          162 LEH  164 (169)
T ss_dssp             ---
T ss_pred             cCC
Confidence            653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=7.1e-27  Score=219.30  Aligned_cols=159  Identities=26%  Similarity=0.337  Sum_probs=132.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH
Q 005931          144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV  223 (669)
Q Consensus       144 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~  223 (669)
                      +.|+.|+..|+.++++.|++.+.+. +.+|.+|.||||+|+..++.+++++|+++|++++.. |.+|.||||+|+.+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~-d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh-ccCCCCHHHHHHHcCCH
Confidence            3688888888888888888888774 677888999999999999999999999999988876 88899999999999999


Q ss_pred             HHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931          224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV  303 (669)
Q Consensus       224 e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~  303 (669)
                      ++++.|++. +++++.+|.+|+||||+|+..|+.+++++|++.  +.+++.+|.+|+||||+|+..|+.+++++|+ +.|
T Consensus        84 ~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll-~~G  159 (169)
T 4gpm_A           84 EVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISK--GADVNTSDSDGRTPLDLAREHGNEEVVKLLE-KQG  159 (169)
T ss_dssp             HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-TC-
T ss_pred             HHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHH-HCC
Confidence            988877765 478888899999999999999999999999986  6778888999999999999999999999998 667


Q ss_pred             ccccc
Q 005931          304 LDIYC  308 (669)
Q Consensus       304 ~d~~~  308 (669)
                      ++++.
T Consensus       160 A~ie~  164 (169)
T 4gpm_A          160 GWLEH  164 (169)
T ss_dssp             -----
T ss_pred             CCcCC
Confidence            67653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=3.4e-27  Score=237.93  Aligned_cols=206  Identities=18%  Similarity=0.190  Sum_probs=161.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHH----hhCCccccc---cCCCCCcHHHHHH---HcCCHHHHHHHHcCCCccccccCC
Q 005931           71 NEKLETPLHEACCQGNHEVSAFLM----EANPTVATK---LNHESQSAFSLAC---RQGHLDVVKLLINQSWLMEFEEDS  140 (669)
Q Consensus        71 n~~g~TpLh~Aa~~g~~eivk~Ll----~~~~~~~~~---~~~~g~tpL~~A~---~~g~~eiv~~Ll~~~~~~~~~~~~  140 (669)
                      +..|.||||.|++.|+.+.++.|+    +.+.++...   .+..|.||||+|+   ..|+.+++++|++.+......   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~---   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM---   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence            567889999999999999554444    478776544   1366889999888   678889999988876443210   


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccC-------------
Q 005931          141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN-------------  207 (669)
Q Consensus       141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~-------------  207 (669)
                                        ..+++   ......|..|.||||+|+..|+.+++++|+++|++++.. +             
T Consensus        79 ------------------~~~~~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~  136 (260)
T 3jxi_A           79 ------------------REFIN---SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGY  136 (260)
T ss_dssp             ------------------HHHHT---CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCS
T ss_pred             ------------------Hhhhc---ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCccccccc
Confidence                              01111   112445668999999999999999999999999998876 5             


Q ss_pred             -CCCChHHHHHHHcCCHHHHHHHHhc--CCCCcccccCCCCcHHHHHHHcCC---------HHHHHHHHHhcCCCCC---
Q 005931          208 -KDGYTPLHLAAINGRVKILVAFLSS--SPASFDRLTTYGETVFHLAVRFDK---------YNAFKFLAESFNTCLF---  272 (669)
Q Consensus       208 -~~g~tpLh~Aa~~g~~e~v~~LL~~--~~~~i~~~d~~g~t~Lh~Av~~~~---------~~iv~~Ll~~~~~~~i---  272 (669)
                       ..|.||||+|+..|+.++++.|+..  .+.+++.+|..|+||||+|+..++         .+++++|++.+  .++   
T Consensus       137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g--a~~~~~  214 (260)
T 3jxi_A          137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC--AKLFPD  214 (260)
T ss_dssp             CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH--HHHCTT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC--cccccc
Confidence             5789999999999999998888875  678889999999999999998777         68999998873  334   


Q ss_pred             ----ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931          273 ----HGQDQFGNTVLHLAVLRKNYQFVEYIIKETV  303 (669)
Q Consensus       273 ----n~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~  303 (669)
                          +.+|..|+||||+|+..|+.+++++|+++++
T Consensus       215 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          215 TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence                6789999999999999999999999995443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=2.4e-27  Score=239.07  Aligned_cols=207  Identities=17%  Similarity=0.180  Sum_probs=133.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHH----hCCccccccC----CCCCcHHHHHH---HcCCHHHHHHHHhhCCccc----
Q 005931           37 DASLNTALHLAARFGHVELVTEITK----LCPELVAAEN----EKLETPLHEAC---CQGNHEVSAFLMEANPTVA----  101 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~----~~~~~~~~~n----~~g~TpLh~Aa---~~g~~eivk~Ll~~~~~~~----  101 (669)
                      +..+.|+||.||..|+.+.|+.|++    .+.+ ++..+    ..|.||||+|+   +.|+.+++++|++.+++..    
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            4568899999999999996555544    7766 44433    77999999999   6799999999999875432    


Q ss_pred             ------cccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCC
Q 005931          102 ------TKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKN  175 (669)
Q Consensus       102 ------~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  175 (669)
                            ...|..|.||||+|+..|+.+++++|++.+.+.+..... +.                    ..+......+..
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-~~--------------------~~~~~~~~~~~~  139 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG-RF--------------------FQPKDEGGYFYF  139 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEE-CC--------------------CSSSCCCCSCCS
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccc-cc--------------------cCcccccccccC
Confidence                  112346677777777777777777777766555422110 00                    000001112245


Q ss_pred             CChHHHHHHhcCCHHHHHHHHh---cCCccccccCCCCChHHHHHHHcCC---------HHHHHHHHhcCCCCc------
Q 005931          176 GFSPLHYASSIGNVNMTKLLLN---HNKDLALQYNKDGYTPLHLAAINGR---------VKILVAFLSSSPASF------  237 (669)
Q Consensus       176 g~t~Lh~Aa~~g~~eiv~~Ll~---~g~~~~~~~~~~g~tpLh~Aa~~g~---------~e~v~~LL~~~~~~i------  237 (669)
                      |.||||+|+..|+.+++++|++   +|++++.. |..|.||||+|+..|+         .++++.|+..+ .++      
T Consensus       140 g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~  217 (260)
T 3jxi_A          140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNL  217 (260)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCCCCccc-CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccch
Confidence            6677777777777777777776   66666654 6667777777776655         46655555443 333      


Q ss_pred             -ccccCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931          238 -DRLTTYGETVFHLAVRFDKYNAFKFLAESF  267 (669)
Q Consensus       238 -~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~  267 (669)
                       +..|..|+||||+|++.|+.+++++|++++
T Consensus       218 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence             556777777777777777777777777753

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=4.2e-29  Score=264.34  Aligned_cols=256  Identities=16%  Similarity=0.099  Sum_probs=151.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCcc--ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccc--cccCCCCCcHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPEL--VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA--TKLNHESQSAF  112 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~--~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~--~~~~~~g~tpL  112 (669)
                      +.+++||||+||..|+.++|++|++.+...  ....|..|.||||+||..|+.++|++|+++|++..  ...+.+ .|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            445567777777777777777777766521  11234456677777777777777777777775311  111112 6777


Q ss_pred             HHHHHcCCHHHHHHHHcCCCcccc-ccCCCCCcHHHHHH-HcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHH
Q 005931          113 SLACRQGHLDVVKLLINQSWLMEF-EEDSVESTPIYLAI-SRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN  190 (669)
Q Consensus       113 ~~A~~~g~~eiv~~Ll~~~~~~~~-~~~~~~~t~L~~A~-~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~e  190 (669)
                      |+|+..|+.++|++|++++.+.+. ..+..|.||||.|+ ..|+.+++++|++.+.        .|.||||+|+..|+.+
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHH
Confidence            777777777777777777765432 13444667777777 7777777777776431        2667777777777777


Q ss_pred             HHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHH------------HHHHhcCCCCcccccCCCCcHHHHHHHcCCHH
Q 005931          191 MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL------------VAFLSSSPASFDRLTTYGETVFHLAVRFDKYN  258 (669)
Q Consensus       191 iv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v------------~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~  258 (669)
                      ++++|+++|++++.. +    ++++.|+.+|+.+++            +.++...                   ..+..+
T Consensus       240 vv~lL~~~ga~~~~~-~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~-------------------~~~~~~  295 (376)
T 2aja_A          240 VNPFIARHVNRLKEM-H----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN-------------------DEVLLD  295 (376)
T ss_dssp             HHHHHHHHHHHHHHH-H----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC-------------------CGGGHH
T ss_pred             HHHHHHhcCcccccc-c----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc-------------------hhhHHH
Confidence            777777777666543 1    356666666665532            2222221                   112356


Q ss_pred             HHHHHHHhcC-C--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchH
Q 005931          259 AFKFLAESFN-T--CLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDA  329 (669)
Q Consensus       259 iv~~Ll~~~~-~--~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~  329 (669)
                      .+++|++... .  ......++.++||||+|+..|+.+++++|++.    ...++..|+|++++|...+..+..
T Consensus       296 ~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~----~~v~~~~~~~~~~~~~~~~~~~~~  365 (376)
T 2aja_A          296 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI----PSVLALTKANNYYINETGGRLDLR  365 (376)
T ss_dssp             HHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS----HHHHHSCC----------------
T ss_pred             HHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC----hHHHHHHHHhccccccccccccHH
Confidence            7777776421 0  01122345788999999999999999999953    467889999999999998876543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=4.4e-26  Score=214.61  Aligned_cols=170  Identities=23%  Similarity=0.301  Sum_probs=147.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      +.+|||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCC
Confidence            4578999999999999999999888877888999999999999999999999999999998876 889999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE  301 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~  301 (669)
                      +.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++.  +.+++.+|..|+||||+|+..++.+++++|+ +
T Consensus        81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~-~  156 (172)
T 3v30_A           81 YTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR--GADLTTEADSGYTPMDLAVALGYRKVQQVIE-N  156 (172)
T ss_dssp             CHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-H
T ss_pred             CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHhCcHHHHHHHH-H
Confidence            99998888865 578999999999999999999999999999996  6788899999999999999999999999999 7


Q ss_pred             cCcccccccCCCCCH
Q 005931          302 TVLDIYCRNHKNQTA  316 (669)
Q Consensus       302 ~~~d~~~~n~~g~T~  316 (669)
                      .++++..+|..|.||
T Consensus       157 ~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          157 HILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHSCC-------
T ss_pred             HHHHHhcccCCCCCC
Confidence            777999999888887

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=7.5e-26  Score=217.17  Aligned_cols=164  Identities=16%  Similarity=0.228  Sum_probs=120.5

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCc
Q 005931           31 RILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQS  110 (669)
Q Consensus        31 ~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~t  110 (669)
                      ..++.+|..|.||||+||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... +..|.|
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t  103 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKT  103 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCC
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCc
Confidence            45677788899999999999999999999988877 6778888899999999999999999999888876544 777888


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHH
Q 005931          111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN  190 (669)
Q Consensus       111 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~e  190 (669)
                      |||+|+..|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHH
Confidence            8888888888888888887766554 34455666666666666666666666655543 445556666666666666666


Q ss_pred             HHHHHHhc
Q 005931          191 MTKLLLNH  198 (669)
Q Consensus       191 iv~~Ll~~  198 (669)
                      ++++|+++
T Consensus       182 ~v~~Ll~~  189 (192)
T 2rfm_A          182 VIKIFTEV  189 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66666554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=234.23  Aligned_cols=190  Identities=17%  Similarity=0.222  Sum_probs=136.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCc-cccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHH----
Q 005931           76 TPLHEACCQGNHEVSAFLMEANPT-VATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAI----  150 (669)
Q Consensus        76 TpLh~Aa~~g~~eivk~Ll~~~~~-~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~----  150 (669)
                      +++|.|+..|+.+.++.+++.+.+ .....|..|.||||+|+..|+.+++++|++.+.......+..|.||||.|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            455556666666666665554433 122235556666666666666666666666555222245555666666666    


Q ss_pred             -HcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHH
Q 005931          151 -SRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAF  229 (669)
Q Consensus       151 -~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~L  229 (669)
                       ..++.++++.|++.+... ...|..|.||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+..|+.++++.|
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHHHHH
Confidence             446677777777776543 566777888888888888888888888888888876 88888999999988988888888


Q ss_pred             HhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931          230 LSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF  267 (669)
Q Consensus       230 L~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~  267 (669)
                      +...+.+++..|..|+||||+|+.+|+.+++++|+++.
T Consensus       236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            88677888888888999999999999999999888863

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=7.6e-26  Score=212.99  Aligned_cols=170  Identities=25%  Similarity=0.307  Sum_probs=124.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC
Q 005931           40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG  119 (669)
Q Consensus        40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  119 (669)
                      +.||||.||..|+.++++.|++.++..++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCC
Confidence            4578888888888888888888887777788888888888888888888888888888776554 777888888888888


Q ss_pred             CHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcC
Q 005931          120 HLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN  199 (669)
Q Consensus       120 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g  199 (669)
                      +.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++
T Consensus        81 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            8888888887776655 44556777777777777777777777776654 566777777777777777777777777777


Q ss_pred             CccccccCCCCChH
Q 005931          200 KDLALQYNKDGYTP  213 (669)
Q Consensus       200 ~~~~~~~~~~g~tp  213 (669)
                      ++.... +..|.||
T Consensus       159 ~~~~~~-~~~~~~p  171 (172)
T 3v30_A          159 LKLFQS-NLVPADP  171 (172)
T ss_dssp             HHHSCC--------
T ss_pred             HHHhcc-cCCCCCC
Confidence            766543 5555554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=4.7e-26  Score=231.97  Aligned_cols=195  Identities=21%  Similarity=0.285  Sum_probs=168.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCCc-cccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           38 ASLNTALHLAARFGHVELVTEITKLCPE-LVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~-~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      ....+++|.|+..|+.+.++.+++.+.+ .++..|..|+||||+|+..|+.+++++|++.|+......+..|.||||+|+
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            3456788999999999999998876544 367888999999999999999999999999998445556889999999999


Q ss_pred             -----HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHH
Q 005931          117 -----RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNM  191 (669)
Q Consensus       117 -----~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~ei  191 (669)
                           ..++.+++++|++.+.... ..+..|.||||+|+..|+.+++++|++.+.+. +..|.+|.||||+|+..|+.++
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~i  231 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEI  231 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHH
Confidence                 6788899999998886554 56667899999999999999999999998875 7789999999999999999999


Q ss_pred             HHHHHh-cCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 005931          192 TKLLLN-HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPA  235 (669)
Q Consensus       192 v~~Ll~-~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~  235 (669)
                      +++|++ .|++++.. |.+|.||||+|+..|+.++++.|+++.+.
T Consensus       232 v~~Ll~~~gad~~~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          232 AGLLLAVPSCDISLT-DRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             HHHHHTSTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             HHHHHhcCCCCCcCc-CCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            999999 89998876 99999999999999999999999987653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=1.4e-25  Score=208.79  Aligned_cols=159  Identities=21%  Similarity=0.244  Sum_probs=123.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931           39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ  118 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~  118 (669)
                      ...|+||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+. |+.+++++|++.|+++... +..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK-DRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHc
Confidence            456788888888888888888887776 57777788888888887 8888888888887776544 77788888888888


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 005931          119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH  198 (669)
Q Consensus       119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~  198 (669)
                      |+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+..+..|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            88888888888776655 45666778888888888888888888887776577788888888888888888888888888


Q ss_pred             CCc
Q 005931          199 NKD  201 (669)
Q Consensus       199 g~~  201 (669)
                      |++
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=5.8e-25  Score=205.87  Aligned_cols=160  Identities=23%  Similarity=0.313  Sum_probs=118.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931           39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ  118 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~  118 (669)
                      .|.||||.||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHc
Confidence            478888888888888888888888766 7788888888888888888888888888888776544 77778888888888


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 005931          119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH  198 (669)
Q Consensus       119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~  198 (669)
                      |+.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             TCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            88888888887766554 44555666666666666666666666665553 45566666666666666666666666666


Q ss_pred             CCcc
Q 005931          199 NKDL  202 (669)
Q Consensus       199 g~~~  202 (669)
                      +.+.
T Consensus       158 ~~~~  161 (167)
T 3v31_A          158 LLKL  161 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=1.4e-24  Score=203.87  Aligned_cols=159  Identities=27%  Similarity=0.366  Sum_probs=113.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      ...+.|+||.||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHH
Confidence            55667888888888888888888888877 6778888888888888888888888888888776544 677788888888


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 005931          117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL  196 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll  196 (669)
                      ..|+.+++++|++++.+.+ ..+..|.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            8888888887777766554 34445566666666666666666666655543 445556666666666666666666666


Q ss_pred             hcC
Q 005931          197 NHN  199 (669)
Q Consensus       197 ~~g  199 (669)
                      +.|
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=7.1e-25  Score=210.37  Aligned_cols=158  Identities=22%  Similarity=0.210  Sum_probs=86.3

Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHH
Q 005931          170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH  249 (669)
Q Consensus       170 ~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh  249 (669)
                      +.+|..|.||||+|+..|+.+++++|++++++++.. +..|.||||+|+..|+.++++.|+..+ .+++..|..|.||||
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKDFSGKTPLM  106 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccc-cccCccHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHH
Confidence            344555555555555555555555555555555443 555555555555555555555555442 445555555555555


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchH
Q 005931          250 LAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDA  329 (669)
Q Consensus       250 ~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~  329 (669)
                      +|+..++.+++++|++.  +.+++.+|..|+||||+|+..++.+++++|+ +.|++++.+|..|.||+++|...++.+.+
T Consensus       107 ~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence            55555555555555554  4445555555555555555555555555555 33555555555555555555555554444


Q ss_pred             HHH
Q 005931          330 TSL  332 (669)
Q Consensus       330 ~~l  332 (669)
                      +.|
T Consensus       184 ~~L  186 (192)
T 2rfm_A          184 KIF  186 (192)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=2.7e-24  Score=201.30  Aligned_cols=153  Identities=23%  Similarity=0.259  Sum_probs=89.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      |.||||.|+..|+.+++++|++.+.. .+..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcC
Confidence            45566666666666666666665544 2455555666666666666666666666666555544 555566666666666


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      +.++++.|+.. +.+++..|..|.||||+|+..++.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           81 YTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             CHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            66655555544 345555555566666666666666666666553  4445555556666666666666666666555

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=1.5e-24  Score=201.76  Aligned_cols=161  Identities=20%  Similarity=0.228  Sum_probs=144.6

Q ss_pred             CccccCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHH
Q 005931            1 MAQGMAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHE   80 (669)
Q Consensus         1 ~~~~m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~   80 (669)
                      |++.+..+|+.|+..|+.+.++.+++ . +..++.+|..|.||||+|+. |+.+++++|++.+.+ ++.+|..|.||||+
T Consensus         1 m~~~~~~~L~~A~~~g~~~~v~~Ll~-~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   76 (162)
T 1ihb_A            1 MAEPWGNELASAAARGDLEQLTSLLQ-N-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHD   76 (162)
T ss_dssp             ----CHHHHHHHHHHTCHHHHHHHTT-S-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CcchHhhHHHHHHHcCCHHHHHHHHh-C-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            67778888999999999999999998 3 35568889999999999999 999999999999988 78899999999999


Q ss_pred             HHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 005931           81 ACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE  160 (669)
Q Consensus        81 Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~  160 (669)
                      |+..|+.+++++|++.|+++... +..|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|+..|+.+++++
T Consensus        77 A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  155 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL  155 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            99999999999999999887665 88999999999999999999999999987544677889999999999999999999


Q ss_pred             HHhcCC
Q 005931          161 ILEVRP  166 (669)
Q Consensus       161 Ll~~~~  166 (669)
                      |++++.
T Consensus       156 Ll~~GA  161 (162)
T 1ihb_A          156 MQANGA  161 (162)
T ss_dssp             HHHTC-
T ss_pred             HHHhCC
Confidence            999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=2.2e-27  Score=234.71  Aligned_cols=192  Identities=18%  Similarity=0.157  Sum_probs=133.0

Q ss_pred             hcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHH
Q 005931           33 LLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAF  112 (669)
Q Consensus        33 l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL  112 (669)
                      .+..+.++.|+||+||..|+.++|++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|+++... |..|.|||
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~-d~~g~tpL   91 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP-DSHGWTPL   91 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHH
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHH
Confidence            344467778888888888888888888888877 6778888888888888888888888888888876554 77788888


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHH--HHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHH
Q 005931          113 SLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLA--ISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVN  190 (669)
Q Consensus       113 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~e  190 (669)
                      |+|+..|+.+++++|++.+.+.+...+..|.||||+|  +..|+.+++++|++.+.+. +..|..|.|+++.++..+.  
T Consensus        92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~--  168 (229)
T 2vge_A           92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFG--  168 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCCSST--
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhhccc--
Confidence            8888888888888888777766543344566777776  6666677777776666553 4556666666664444332  


Q ss_pred             HHHHHHhcCCcccc-ccCCCCChHHHHHHHcCCHHHHHHHH
Q 005931          191 MTKLLLNHNKDLAL-QYNKDGYTPLHLAAINGRVKILVAFL  230 (669)
Q Consensus       191 iv~~Ll~~g~~~~~-~~~~~g~tpLh~Aa~~g~~e~v~~LL  230 (669)
                       .++|++.|+++.. ..|.+|.||||+|+.+|+.++++..+
T Consensus       169 -~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          169 -DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             -TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             -cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence             2455666665321 23566666666666666666655433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=1.5e-24  Score=202.55  Aligned_cols=160  Identities=23%  Similarity=0.363  Sum_probs=127.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      |..|.|+||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHH
Confidence            6678889999999999999999988766667777888889999999999999999999988887654 778888888888


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 005931          117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL  196 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll  196 (669)
                      ..|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|.+|.||||+|+. |+.+++++|+
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHh
Confidence            8888888888888877665 45566778888888888888888888777664 6677788888888665 7778888888


Q ss_pred             hcCC
Q 005931          197 NHNK  200 (669)
Q Consensus       197 ~~g~  200 (669)
                      ++|+
T Consensus       161 ~~gA  164 (165)
T 3twr_A          161 GDAA  164 (165)
T ss_dssp             TC--
T ss_pred             hccc
Confidence            7764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=2.6e-24  Score=204.04  Aligned_cols=167  Identities=21%  Similarity=0.266  Sum_probs=139.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      +.++|+.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcC
Confidence            5568888888888888888888877667788888889999999999999999999988888875 888889999999999


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE  301 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~  301 (669)
                      +.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++.  +.+++.+|..|.||||+|+..++.+++++|+ +
T Consensus        84 ~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~-~  159 (179)
T 3f6q_A           84 HRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVAN--GALVSICNKYGEMPVDKAKAPLRELLRERAE-K  159 (179)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH-H
T ss_pred             CHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcchhccCCCCcHHHHHHHHHHHHHHHHH-H
Confidence            98888877765 478888888899999999999999999999886  6678888889999999998888888888888 6


Q ss_pred             cCcccccccCCC
Q 005931          302 TVLDIYCRNHKN  313 (669)
Q Consensus       302 ~~~d~~~~n~~g  313 (669)
                      .|++++..+..+
T Consensus       160 ~g~~~~~~~~~~  171 (179)
T 3f6q_A          160 MGQNLNRIPYKD  171 (179)
T ss_dssp             TTCCCSCBCCCC
T ss_pred             hhcCcccCCccc
Confidence            777887766554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=2.9e-24  Score=203.66  Aligned_cols=165  Identities=17%  Similarity=0.212  Sum_probs=123.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931           38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR  117 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~  117 (669)
                      ..+.++||.||..|+.++|++|++.++..++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHH
Confidence            346677888888888888888888766667777778888888888888888888888877776554 6777788888888


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q 005931          118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN  197 (669)
Q Consensus       118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~  197 (669)
                      .|+.+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..++.+++++|++
T Consensus        82 ~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            888888888777776655 45566777777777777777777777777664 6667788888888888888888888888


Q ss_pred             cCCccccc
Q 005931          198 HNKDLALQ  205 (669)
Q Consensus       198 ~g~~~~~~  205 (669)
                      +|++++..
T Consensus       160 ~g~~~~~~  167 (179)
T 3f6q_A          160 MGQNLNRI  167 (179)
T ss_dssp             TTCCCSCB
T ss_pred             hhcCcccC
Confidence            88877654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=1.2e-23  Score=197.55  Aligned_cols=153  Identities=25%  Similarity=0.423  Sum_probs=104.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      +.++|+.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFG   91 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcC
Confidence            455666666666666666666666553 455666777777777777777777777777666654 666777777777777


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      +.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++.  +.+++.+|..|.||||+|+..++.+++++|+
T Consensus        92 ~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           92 HLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            77776666654 356666677777777777777777777777765  4556667777777777777777777777776

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=1.1e-23  Score=194.16  Aligned_cols=149  Identities=20%  Similarity=0.277  Sum_probs=89.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCC
Q 005931           41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGH  120 (669)
Q Consensus        41 ~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  120 (669)
                      .|+||.|+..|+.+++++|++.+++. + .+..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCh
Confidence            46777777777777777777776652 2 4666777777777777777777777766665433 5556666666666666


Q ss_pred             HHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC
Q 005931          121 LDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK  200 (669)
Q Consensus       121 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~  200 (669)
                      .+++++|++++.+.                                   +..|..|.||||+|+..|+.+++++|+++|+
T Consensus        80 ~~~v~~Ll~~g~~~-----------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  124 (153)
T 1awc_B           80 ANIVEVLLKHGADV-----------------------------------NAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHHHHTTTCCT-----------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCC-----------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            66666666555443                                   3334445555555555555555555555555


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHH
Q 005931          201 DLALQYNKDGYTPLHLAAINGRVKILVA  228 (669)
Q Consensus       201 ~~~~~~~~~g~tpLh~Aa~~g~~e~v~~  228 (669)
                      +++.. |..|.||||+|+.+|+.++++.
T Consensus       125 ~~~~~-~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B          125 DVHTQ-SKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             CTTCC-CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             Ccccc-CCCCCCHHHHHHHcCCHHHHHH
Confidence            55443 5555555555555555555443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.91  E-value=8.8e-24  Score=195.31  Aligned_cols=153  Identities=24%  Similarity=0.291  Sum_probs=129.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      +.|+||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|+++|++++.. |..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcC
Confidence            34788888888888888888887444557778889999999 8889999999999999888875 888999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      +.++++.|+.. +.+++..|..|+||||+|+..|+.+++++|++.   .+++.+|.+|.||||+|+..++.+++++|++
T Consensus        80 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           80 FLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99988877765 478888888999999999999999999999885   5778888899999999999999999998884

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.91  E-value=7.5e-24  Score=195.80  Aligned_cols=154  Identities=23%  Similarity=0.287  Sum_probs=95.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC
Q 005931           40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG  119 (669)
Q Consensus        40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  119 (669)
                      +.|+||.||..|+.+++++|++.....++..|..|.||||+ +..|+.+++++|++.|+++... +..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcC
Confidence            45667777777777777777766333356666667777777 6667777777777766665443 566666666666666


Q ss_pred             CHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 005931          120 HLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH  198 (669)
Q Consensus       120 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~  198 (669)
                      +.+++++|++.+.+.+ ..+..|.||||.|+..|+.+++++|++. .+ .+..|.+|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            6666666666665443 3444455666666666666666666655 22 345555666666666666666666666543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=1.5e-23  Score=193.33  Aligned_cols=149  Identities=26%  Similarity=0.353  Sum_probs=91.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH
Q 005931          144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV  223 (669)
Q Consensus       144 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~  223 (669)
                      ++|+.|+..|+.+++++|++.+.+..  .|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcChH
Confidence            45666666666666666666555431  3555666666666666666666666666665554 55666666666666666


Q ss_pred             HHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 005931          224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI  298 (669)
Q Consensus       224 e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~L  298 (669)
                      ++++.|+.. +.+++..|..|+||||+|+.+++.+++++|++.  +.+++.+|..|+||||+|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            665555543 355666666666666666666666666666664  445556666666666666666666666654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=7.7e-27  Score=230.81  Aligned_cols=160  Identities=17%  Similarity=0.137  Sum_probs=108.1

Q ss_pred             HHHHHHhCCcc--ccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 005931           56 VTEITKLCPEL--VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL  133 (669)
Q Consensus        56 vk~Ll~~~~~~--~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~  133 (669)
                      ++.|++.+.+.  .+..+..|.||||+|+..|+.+++++|++.|+++... |..|.||||+|+..|+.+++++|++.+.+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            35667766542  3344556778888899999999999999888876554 77888888888888888888888887766


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHH--HhcCCHHHHHHHHhcCCccccccCCCCC
Q 005931          134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYA--SSIGNVNMTKLLLNHNKDLALQYNKDGY  211 (669)
Q Consensus       134 ~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--a~~g~~eiv~~Ll~~g~~~~~~~~~~g~  211 (669)
                      .+ ..+..|.||||+|+..|+.+++++|++.+.+.....+.+|.||||+|  +..|+.+++++|+++|++++.. |..|.
T Consensus        80 ~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~-~~~~~  157 (229)
T 2vge_A           80 VN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-NSGAV  157 (229)
T ss_dssp             TT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS-GGGEE
T ss_pred             CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc-cCCch
Confidence            65 45556777777777777777777777776665333335677777777  6777777777777777776654 56666


Q ss_pred             hHHHHHH
Q 005931          212 TPLHLAA  218 (669)
Q Consensus       212 tpLh~Aa  218 (669)
                      +|++.++
T Consensus       158 ~~l~~~~  164 (229)
T 2vge_A          158 YALWDYS  164 (229)
T ss_dssp             EESSCBC
T ss_pred             HHHHHHh
Confidence            6666443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=4.8e-24  Score=199.18  Aligned_cols=153  Identities=21%  Similarity=0.293  Sum_probs=98.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      +.++|+.|+..|+.++++.|++..+......+..|.||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+..|
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   86 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHHHcC
Confidence            4456666666666666666665544444555566666666666666666666666666666654 666666666666666


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      +.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++.  +.+++.+|.+|+||||+|+. ++.+++++|+
T Consensus        87 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           87 HYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH--GADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             cHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            66666655543 356666666666777777777777777776664  45566666677777777555 6666666666

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=8.4e-26  Score=239.03  Aligned_cols=253  Identities=19%  Similarity=0.174  Sum_probs=176.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchh-hhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCc----cccccCCCCCcHHHHH
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKR-ILLQRDASLNTALHLAARFGHVELVTEITKLCPE----LVAAENEKLETPLHEA   81 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~-~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~----~~~~~n~~g~TpLh~A   81 (669)
                      .+|+.|+..|+.+.++.|++...+. .....+..|.||||+||..|+.++|++|++.+++    ..+..+   .||||+|
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~A  170 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHH
Confidence            4599999999999999999833211 1223456788999999999999999999999974    123333   8999999


Q ss_pred             HHcCCHHHHHHHHhhCCcccc-ccCCCCCcHHHHHH-HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHH
Q 005931           82 CCQGNHEVSAFLMEANPTVAT-KLNHESQSAFSLAC-RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAR  159 (669)
Q Consensus        82 a~~g~~eivk~Ll~~~~~~~~-~~~~~g~tpL~~A~-~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~  159 (669)
                      |..|+.++|++|+++|+++.. ..+..|.||||+|+ ..|+.++|++|++.+..        +.|||+.|+..|+.++++
T Consensus       171 a~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHH
T ss_pred             HHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHH
Confidence            999999999999999998765 24778999999999 99999999999996632        679999999999999999


Q ss_pred             HHHhcCCcccCCCCCCCChHHHHHHhcCCHHH------------HHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHH
Q 005931          160 EILEVRPRFAGKTDKNGFSPLHYASSIGNVNM------------TKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILV  227 (669)
Q Consensus       160 ~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~ei------------v~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~  227 (669)
                      +|++.+.+.. .    ..++++.|+..|+.++            ++.|+..+.                   .+..+.++
T Consensus       243 lL~~~ga~~~-~----~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~-------------------~~~~~~~~  298 (376)
T 2aja_A          243 FIARHVNRLK-E----MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND-------------------EVLLDDIR  298 (376)
T ss_dssp             HHHHHHHHHH-H----HHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC-------------------GGGHHHHH
T ss_pred             HHHhcCcccc-c----ccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch-------------------hhHHHHHH
Confidence            9999876542 2    1247888888888663            344444431                   12245556


Q ss_pred             HHHhcCCCC----cccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          228 AFLSSSPAS----FDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       228 ~LL~~~~~~----i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      .|+......    .......+.|+||+|+..|+.+++++|++.+     ..+|..|+|++.+|-..|..++.+.-+
T Consensus       299 ~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~  369 (376)
T 2aja_A          299 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-----SVLALTKANNYYINETGGRLDLRAVAL  369 (376)
T ss_dssp             HHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH-----HHHHSCC--------------------
T ss_pred             HHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh-----HHHHHHHHhccccccccccccHHHHHH
Confidence            665432211    1122345678999999999999999999852     456788999999999999888776544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=8.9e-24  Score=210.29  Aligned_cols=177  Identities=16%  Similarity=0.142  Sum_probs=115.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc
Q 005931          141 VESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN  220 (669)
Q Consensus       141 ~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~  220 (669)
                      .|.||||.|+..++.+.++.|++++.+..  .+..|.||||.|+..|+.+++++|++.|++++.. |..|.||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHc
Confidence            36677777777777777777777766652  2356788888888888888888888888887765 88888888888888


Q ss_pred             CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCC-cHHHHH--HHcCCHHHHHH
Q 005931          221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGN-TVLHLA--VLRKNYQFVEY  297 (669)
Q Consensus       221 g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~-TpLh~A--~~~~~~~iv~~  297 (669)
                      |+.++++.|+.. +.+++.+|..|+||||+|+..|+.+++++|++.  +.+++.+|..|. ||||+|  +..|+.+++++
T Consensus        81 g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           81 GHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES--GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             TCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            888888887766 577888888888888888888888888888886  667788887776 999988  77788889998


Q ss_pred             HHHhcCcccccc---------cCCCCCHHHHHHHcC
Q 005931          298 IIKETVLDIYCR---------NHKNQTALDIIEQAG  324 (669)
Q Consensus       298 Ll~~~~~d~~~~---------n~~g~T~L~~a~~~~  324 (669)
                      |+ ..+++++..         +..+.++++++...+
T Consensus       158 Ll-~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          158 LY-GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             HH-HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred             HH-HhhhcccccccceEEEEeccCCCCCCcccccCC
Confidence            88 556677665         455666666655444

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=1.2e-23  Score=209.47  Aligned_cols=161  Identities=15%  Similarity=0.129  Sum_probs=79.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931           38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR  117 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~  117 (669)
                      ..|.||||.|+..|+.+.++.|++.+.++ +. +..|.||||.|+..|+.+++++|++.|+++... |..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHH
Confidence            34667777777777777777777766652 32 345667777777777777777777776655443 6666677777777


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCC-hHHHHH--HhcCCHHHHHH
Q 005931          118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGF-SPLHYA--SSIGNVNMTKL  194 (669)
Q Consensus       118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A--a~~g~~eiv~~  194 (669)
                      .|+.+++++|++++.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..+..|. ||||+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            777777776666665554 34445666666666666666666666666554 33333333 666666  55566666666


Q ss_pred             HHhcCCccc
Q 005931          195 LLNHNKDLA  203 (669)
Q Consensus       195 Ll~~g~~~~  203 (669)
                      |+++|++++
T Consensus       158 Ll~~~a~~~  166 (239)
T 1ycs_B          158 LYGVQEKMG  166 (239)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHhhhccc
Confidence            666655544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=1.8e-22  Score=186.83  Aligned_cols=145  Identities=18%  Similarity=0.148  Sum_probs=115.0

Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCc-HH
Q 005931          170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGET-VF  248 (669)
Q Consensus       170 ~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t-~L  248 (669)
                      ...+..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+ .|+.++++.|+.. +.+++.+|..|+| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHH
Confidence            445778999999999999999999999999998876 889999999985 8999998888876 5889999999999 99


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931          249 HLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDII  320 (669)
Q Consensus       249 h~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a  320 (669)
                      |+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..++.+++++|+ +.|++++.+|..|.||.+-+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLR-AAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS-SCC-----------------
T ss_pred             HHHHHCCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCHHHHHHHHH-HcCCCCCccCcCcCcccccC
Confidence            999999999999999997  6788999999999999999999999999999 78999999999999997743

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.86  E-value=1.9e-21  Score=175.41  Aligned_cols=130  Identities=17%  Similarity=0.158  Sum_probs=111.0

Q ss_pred             cCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC-CCcH
Q 005931          169 AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTY-GETV  247 (669)
Q Consensus       169 ~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~-g~t~  247 (669)
                      .+..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+. |+.++++.|+..+ .+++..|.. |+||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCCH
Confidence            4667788899999999999999999999998888875 8888999999998 9999888888754 678888888 8999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 005931          248 FHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVL  304 (669)
Q Consensus       248 Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~  304 (669)
                      ||+|+..++.+++++|++.  +.+++.+|..|+||||+|+..++.+++++|+ +.|+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll-~~Ga  135 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRA--GARLDVCDAWGRLPVDLAEEQGHRDIARYLH-AATG  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHT--CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHH-HHHC
T ss_pred             HHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCC
Confidence            9999999999999999986  6678888999999999999999999999998 4443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.85  E-value=1.6e-21  Score=175.79  Aligned_cols=130  Identities=23%  Similarity=0.251  Sum_probs=91.2

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCC-CCc
Q 005931           32 ILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHE-SQS  110 (669)
Q Consensus        32 ~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~-g~t  110 (669)
                      .++.++..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+. |+.+++++|++.|+++... +.. |.|
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~~g~t   80 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-DPATLTR   80 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-BTTTTBC
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-CCCCCCC
Confidence            3566677888888888888888888888888776 67777788888888888 8888888888887776554 555 677


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 005931          111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR  165 (669)
Q Consensus       111 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~  165 (669)
                      |||+|+..|+.+++++|++.+.+.+ ..+..|.||||+|+..++.+++++|++++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            7777777777777777777665544 33444555555555555555555555543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=9.7e-22  Score=187.35  Aligned_cols=158  Identities=13%  Similarity=0.053  Sum_probs=84.3

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHH----HHHHHHhcCCCCcccccCCCCcHHHHHHH
Q 005931          178 SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK----ILVAFLSSSPASFDRLTTYGETVFHLAVR  253 (669)
Q Consensus       178 t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e----~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~  253 (669)
                      ++|+.|+..|+.+.++.+++.+.+.  ..+..|.||||+|+.+|+.+    +++.|+. .|++++.+|..|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCCCTTCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHH
Confidence            3444444444444444444443221  11133445555555444432    3333332 234455555555555555554


Q ss_pred             cCC------HHHHHHHHHhcCCCCCccCCCCCC-cHHHHHHHcC-----CHHHHHHHHHhcCcccccccCCCCCHHHHHH
Q 005931          254 FDK------YNAFKFLAESFNTCLFHGQDQFGN-TVLHLAVLRK-----NYQFVEYIIKETVLDIYCRNHKNQTALDIIE  321 (669)
Q Consensus       254 ~~~------~~iv~~Ll~~~~~~~in~~D~~G~-TpLh~A~~~~-----~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~  321 (669)
                      .++      .+++++|++.  ++++|.+|..|+ ||||+|+..+     +.+++++|+++.|+|++.+|..|+||||+|.
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCcchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            443      3556666664  556666666666 6666666633     2346666663366677777777777777776


Q ss_pred             HcCCCchHHHHHHHHHHhC
Q 005931          322 QAGTNDDATSLKKLFKTAG  340 (669)
Q Consensus       322 ~~~~~~~~~~l~~~l~~~~  340 (669)
                      +.++.+.++.|.++....+
T Consensus       163 ~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          163 RCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             TTTCHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHHh
Confidence            6666666666666555443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=1.9e-21  Score=185.33  Aligned_cols=149  Identities=9%  Similarity=0.079  Sum_probs=97.9

Q ss_pred             HHHHHHHhCCHHHHHHHHcCcchhhhcccC-CCCChHHHHHHHcCCH----HHHHHHHHhCCccccccCCCCCcHHHHHH
Q 005931            8 NLSEAIVRNDKQALINLVGCSNKRILLQRD-ASLNTALHLAARFGHV----ELVTEITKLCPELVAAENEKLETPLHEAC   82 (669)
Q Consensus         8 ~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d-~~g~T~Lh~Aa~~g~~----e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa   82 (669)
                      .||.|++.|+.+.++.+++ .+   .+.++ ..|.||||+|+..|+.    +++++|++.|++ ++.+|..|+||||+|+
T Consensus         9 ~l~~Aa~~g~~~~~~~l~~-~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            9 TVSAAAMLGTYEDFLELFE-KG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             SHHHHHHHSCHHHHHHHHH-HS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHh-cC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence            3788888888888888777 32   23444 6688888888888864    478888888877 7777888888888888


Q ss_pred             HcCC------HHHHHHHHhhCCccccccCCCCC-cHHHHHHHcCC-----HHHHHHHHc-CCCccccccCCCCCcHHHHH
Q 005931           83 CQGN------HEVSAFLMEANPTVATKLNHESQ-SAFSLACRQGH-----LDVVKLLIN-QSWLMEFEEDSVESTPIYLA  149 (669)
Q Consensus        83 ~~g~------~eivk~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g~-----~eiv~~Ll~-~~~~~~~~~~~~~~t~L~~A  149 (669)
                      ..|+      .+++++|+++|++++.. |..|. ||||+|+..+.     .+++++|++ .+.+.+ ..+..|.||||+|
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d~~G~TpL~~A  161 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFV  161 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCCTTSCCHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-ccCCCCCCHHHHH
Confidence            8776      56778888877777654 66777 77777776432     335555555 444443 3344444444444


Q ss_pred             HHcCCHHHHHHHHh
Q 005931          150 ISRGHTDIAREILE  163 (669)
Q Consensus       150 ~~~g~~~iv~~Ll~  163 (669)
                      +..|+.+++++|.+
T Consensus       162 ~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          162 KRCQKPIALKMMED  175 (186)
T ss_dssp             HTTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHH
Confidence            44444444444443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.84  E-value=4.5e-21  Score=177.32  Aligned_cols=141  Identities=18%  Similarity=0.171  Sum_probs=67.9

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHH
Q 005931           36 RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLA  115 (669)
Q Consensus        36 ~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A  115 (669)
                      .+..|.||||+||..|+.++|++|++.+.+ ++..|..|.||||+|+ .|+.+++++|++.|+++... +..        
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~-d~~--------   76 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPA--------   76 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTT--------
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCc-CCC--------
Confidence            344555555555555555555555555544 4445555555555543 55555555555555444322 333        


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCc-HHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHH
Q 005931          116 CRQGHLDVVKLLINQSWLMEFEEDSVEST-PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL  194 (669)
Q Consensus       116 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t-~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~  194 (669)
                                                |.| |||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++
T Consensus        77 --------------------------g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~  129 (156)
T 1bi7_B           77 --------------------------TLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARY  129 (156)
T ss_dssp             --------------------------TCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             --------------------------CCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHH
Confidence                                      444 555555555555555555554443 4456666677777777777777777


Q ss_pred             HHhcCCccccccCCCCChHHH
Q 005931          195 LLNHNKDLALQYNKDGYTPLH  215 (669)
Q Consensus       195 Ll~~g~~~~~~~~~~g~tpLh  215 (669)
                      |+++|++++.. +..|.||.+
T Consensus       130 Ll~~ga~~~~~-~~~g~t~~~  149 (156)
T 1bi7_B          130 LRAAAGGTRGS-NHARIDAAE  149 (156)
T ss_dssp             HSSCC----------------
T ss_pred             HHHcCCCCCcc-CcCcCcccc
Confidence            77777766654 666666655

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.84  E-value=2.3e-20  Score=168.24  Aligned_cols=125  Identities=24%  Similarity=0.327  Sum_probs=95.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      ...+.||||+||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... |..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHH
Confidence            56678888888888888888888888877 6778888888888888888888888888888776554 677788888888


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 005931          117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV  164 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~  164 (669)
                      ..|+.+++++|++++.+.+ ..+..|.||||+|+..|+.+++++|++.
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            8888888888777766554 3445566666666666666666666654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.83  E-value=4.5e-20  Score=163.20  Aligned_cols=125  Identities=34%  Similarity=0.525  Sum_probs=106.8

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHc
Q 005931          175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRF  254 (669)
Q Consensus       175 ~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~  254 (669)
                      +|.||||+|+..|+.+++++|+++|++++.. +..|.||||.|+..|+.++++.|+.. +.+++..|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHc
Confidence            4788999999999999999999888888765 88889999999999999988877765 467888888899999999999


Q ss_pred             CCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 005931          255 DKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVL  304 (669)
Q Consensus       255 ~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~  304 (669)
                      ++.+++++|++.  +.+++.+|..|+||||+|+..++.+++++|+ +.|+
T Consensus        79 ~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGA  125 (126)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTC
T ss_pred             ChHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCcHHHHHHHH-HcCC
Confidence            999999999986  6677888899999999999999999999998 4444

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.83  E-value=2.4e-20  Score=168.16  Aligned_cols=125  Identities=23%  Similarity=0.343  Sum_probs=107.3

Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHH
Q 005931          172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLA  251 (669)
Q Consensus       172 ~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~A  251 (669)
                      ....+.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|+.. +.+++..|..|.||||+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHH
Confidence            3456788999999999999999999999888775 88899999999999999988888765 578888888999999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          252 VRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       252 v~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      +..++.+++++|++.  +.+++.+|.+|+||||+|+..++.+++++|++
T Consensus        88 ~~~~~~~~v~~Ll~~--g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           88 AFIGHLEIAEVLLKH--GADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHc--CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999986  66778889999999999999999999999884

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.83  E-value=5.7e-20  Score=162.54  Aligned_cols=124  Identities=37%  Similarity=0.554  Sum_probs=76.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931           39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ  118 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~  118 (669)
                      +|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHc
Confidence            366777777777777777777777666 5666677777777777777777777777776665433 55566666666666


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 005931          119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR  165 (669)
Q Consensus       119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~  165 (669)
                      |+.+++++|++++.+.+ ..+..|.|||+.|+..++.+++++|++.+
T Consensus        79 ~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            66666666665554433 23333444444444444444444444443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=1.7e-20  Score=187.18  Aligned_cols=144  Identities=19%  Similarity=0.171  Sum_probs=122.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      +..|.||||+||..|+.++|+.|++ +.+ ++.+|..|.||||+|+..|+.++|++|+++|++++...+..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4578899999999999999999999 666 78889999999999999999999999999999987764588999999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 005931          117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL  196 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll  196 (669)
                      ..|+.+++++|++++.+.+ ..+..|.||||+|+..+.                  ...+.||||+|+..|+.+++++|+
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIE-VEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence            9999999999999988776 567779999999985221                  245788999999999999999998


Q ss_pred             hcCCc
Q 005931          197 NHNKD  201 (669)
Q Consensus       197 ~~g~~  201 (669)
                      +++.+
T Consensus       181 ~~~~~  185 (244)
T 3ui2_A          181 GQVFE  185 (244)
T ss_dssp             HHHEE
T ss_pred             Hhccc
Confidence            86543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=2.5e-20  Score=177.20  Aligned_cols=141  Identities=21%  Similarity=0.187  Sum_probs=123.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      +..|.||||+||..|+.++++.|++ +.+ ++.+|..|.||||+|+..|+.+++++|++.|+++....+..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            5688999999999999999999999 666 78899999999999999999999999999999987764588999999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 005931          117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL  196 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll  196 (669)
                      ..|+.+++++|++++.+.+ ..+..|.||||+|+..++.                  ..+.++|++|+..|+.+++++|.
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHH
Confidence            9999999999999988776 5677899999999874321                  34678999999999999999987


Q ss_pred             hc
Q 005931          197 NH  198 (669)
Q Consensus       197 ~~  198 (669)
                      ++
T Consensus       180 ~~  181 (183)
T 3deo_A          180 GQ  181 (183)
T ss_dssp             TC
T ss_pred             Hh
Confidence            65

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=4.1e-20  Score=181.39  Aligned_cols=138  Identities=16%  Similarity=0.131  Sum_probs=113.9

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHH
Q 005931          173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV  252 (669)
Q Consensus       173 d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av  252 (669)
                      +..|.||||+|+..|+.+++++|++.|++++.. |..|.||||+|+..|+.++++.|+...+.+++..|..|+||||+|+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            567899999999999999999999999998876 8999999999999999999999998878999999999999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCC
Q 005931          253 RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQ  314 (669)
Q Consensus       253 ~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~  314 (669)
                      ..|+.+++++|++.  +.+++.+|.+|+||||+|+..++.++++.|+ ..+++.+.+|.+|+
T Consensus       149 ~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~-~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          149 WKGYADIVQLLLAK--GARTDLRNIEKKLAFDMATNAACASLLKKKQ-GTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHTCHHHHHHHHHH--TCCSCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred             HcCCHHHHHHHHHc--CCCCccccCCCCCHHHHhcchhHHHHHHHHh-ccchhhhccchhhh
Confidence            99999999999997  6788999999999999999999999999998 66667777666543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.79  E-value=7.5e-21  Score=189.73  Aligned_cols=138  Identities=20%  Similarity=0.245  Sum_probs=87.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      |.||||.|+..|+.++++.|++ +.+ ++..|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            4556666666666666666665 333 34556666666666666666666666666666666553356666666666666


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE  301 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~  301 (669)
                      +.++++.|+.. +.+++..|..|+||||+|+..++.                   ..+.||||+|+..|+.+++++|++.
T Consensus       123 ~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~~-------------------~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          123 RPEVVEALVEL-GADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHTT-------------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHhc-------------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence            66666666554 456666666666776666653322                   2357788888888888888877743

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.79  E-value=8.7e-20  Score=164.55  Aligned_cols=122  Identities=20%  Similarity=0.273  Sum_probs=59.0

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHH
Q 005931          173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAV  252 (669)
Q Consensus       173 d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av  252 (669)
                      |.+|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|+.. +.+++..|..|+||||+|+
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHHH
Confidence            444555555555555555555555555544443 44455555555555555544444432 2444444444555555555


Q ss_pred             HcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 005931          253 RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI  298 (669)
Q Consensus       253 ~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~L  298 (669)
                      ..++.+++++|++.  +.+++.+|..|+||||+|+..+..+++++|
T Consensus        85 ~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           85 KNGHVDIVKLLLSY--GASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             HTTCHHHHHHHHHT--TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             HcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence            55555555555443  334444445555555555444444444433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.79  E-value=7.2e-20  Score=165.10  Aligned_cols=123  Identities=23%  Similarity=0.296  Sum_probs=76.7

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931           35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL  114 (669)
Q Consensus        35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~  114 (669)
                      .+|..|.||||+||..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|+++... +..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-CCCCCCHHHH
Confidence            3466677777777777777777777777666 5666677777777777777777777777776665443 5556666666


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 005931          115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE  160 (669)
Q Consensus       115 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~  160 (669)
                      |+..|+.+++++|++.+.+.+ ..+..|.|||++|+..+..+++++
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~  127 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLL  127 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhh
Confidence            666666666666665555443 334445555555554444444433

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.78  E-value=4.7e-19  Score=156.55  Aligned_cols=111  Identities=19%  Similarity=0.204  Sum_probs=86.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      +..|.|+||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|+++... |..|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHH
Confidence            45678888888888888888888888877 6778888888888888888888888888888776554 777888888888


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHH
Q 005931          117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAI  150 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~  150 (669)
                      ..|+.+++++|++++.+.+ ..+..|.||||+|.
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhC
Confidence            8888888888887776654 45566777777773

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.78  E-value=8.6e-19  Score=180.25  Aligned_cols=142  Identities=15%  Similarity=0.133  Sum_probs=110.1

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCccccc-----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCCc
Q 005931          175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQ-----YNKDGYTPLHLAAIN---GRVKILVAFLSSSPASFDRLTTYGET  246 (669)
Q Consensus       175 ~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~-----~~~~g~tpLh~Aa~~---g~~e~v~~LL~~~~~~i~~~d~~g~t  246 (669)
                      ...++|+.|+..|+.+.++.|++.|++++..     .+..|.||||+|+..   |+.++++.|+.. +.+++.+|..|+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCC
Confidence            3457788888888888888888888887763     477888899998886   788888888776 4788888888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCC
Q 005931          247 VFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTN  326 (669)
Q Consensus       247 ~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~  326 (669)
                      |||+|+..|+.+++++|++.  +++++.+|.+|+||||+|+..++.+++++|++ .+++      .|.||||+|+..++.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT--TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC--------
T ss_pred             HHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999886  67788888889999999999999999998884 4433      578999988877653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.78  E-value=8.9e-19  Score=180.13  Aligned_cols=142  Identities=15%  Similarity=0.139  Sum_probs=113.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHcCCCccccccCCCCCc
Q 005931           73 KLETPLHEACCQGNHEVSAFLMEANPTVATK-----LNHESQSAFSLACRQ---GHLDVVKLLINQSWLMEFEEDSVEST  144 (669)
Q Consensus        73 ~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~~~t  144 (669)
                      .+.++|+.|+..|+.+.++.|++.|+++...     .+..|.||||+|+..   ++.+++++|++++.+.+ ..+..|.|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCCCCCC
Confidence            3457799999999999999999888887653     477889999999987   88999999998888776 46677899


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH
Q 005931          145 PIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV  223 (669)
Q Consensus       145 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~  223 (669)
                      |||+|+..|+.+++++|++.+.+. +..|.+|.||||+|+..|+.+++++|+++|++       .|.||||+|+..|+.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence            999999999999999999988775 67888999999999999999999999998876       367899999988864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.77  E-value=5.4e-19  Score=167.95  Aligned_cols=104  Identities=18%  Similarity=0.275  Sum_probs=51.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCcccCCCC-CCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHc
Q 005931          142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTD-KNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN  220 (669)
Q Consensus       142 ~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~  220 (669)
                      |.||||+|+..|+.+++++|++.+.+. +..| .+|.||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+..
T Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~  153 (183)
T 3deo_A           76 GRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREI  153 (183)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHh
Confidence            444444444444444444444444333 2222 45555555555555555555555555555543 55555555555542


Q ss_pred             CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          221 GRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE  265 (669)
Q Consensus       221 g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~  265 (669)
                      ++.                  ..+.++|++|+..|+.+++++|.+
T Consensus       154 ~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          154 LKT------------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             HHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             ccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            211                  223455555555555555555544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.77  E-value=9.1e-19  Score=154.69  Aligned_cols=108  Identities=17%  Similarity=0.180  Sum_probs=58.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHH
Q 005931          209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVL  288 (669)
Q Consensus       209 ~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~  288 (669)
                      .|.||||.|+..|+.++++.|+... .+++..|..|+||||+|+..++.+++++|++.  +.+++.+|..|+||||+|+.
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHH
Confidence            3445555555555555555544432 34555555555555555555555555555553  34455555555555555555


Q ss_pred             cCCHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931          289 RKNYQFVEYIIKETVLDIYCRNHKNQTALDII  320 (669)
Q Consensus       289 ~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a  320 (669)
                      .++.+++++|+ +.|++++.+|..|+||+++|
T Consensus        83 ~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           83 EGHVSCVKLLL-SKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHC
T ss_pred             cCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHh
Confidence            55555555555 33555555555555555555

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=1e-17  Score=170.18  Aligned_cols=124  Identities=19%  Similarity=0.195  Sum_probs=99.6

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCccccc-----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCCcH
Q 005931          176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQ-----YNKDGYTPLHLAAIN---GRVKILVAFLSSSPASFDRLTTYGETV  247 (669)
Q Consensus       176 g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~-----~~~~g~tpLh~Aa~~---g~~e~v~~LL~~~~~~i~~~d~~g~t~  247 (669)
                      ..++|+.|+..|+.+.+..+++.|.+++..     .+..|.||||+|+..   |+.++++.|+.. +++++.+|..|+||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCH
Confidence            346788888888888888888888875433     267788888888888   788887777766 47788888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 005931          248 FHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET  302 (669)
Q Consensus       248 Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~  302 (669)
                      ||+|+.+|+.+++++|++.  +++++.+|.+|.||||+|+..|+.+++++|++.+
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHc--CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            8888888888888888885  6678888888888888888888888888888443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.76  E-value=4.3e-19  Score=174.06  Aligned_cols=130  Identities=19%  Similarity=0.219  Sum_probs=64.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhh-CCccccccCCCCCcHHHHH
Q 005931           37 DASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA-NPTVATKLNHESQSAFSLA  115 (669)
Q Consensus        37 d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~-~~~~~~~~~~~g~tpL~~A  115 (669)
                      +..|.||||+||..|+.++|++|++.+.+ ++.+|..|.||||+||..|+.+++++|++. |.++... |..|.||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~-d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ-NKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCC-CTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcccc-CCCCCCHHHHH
Confidence            44455555555555555555555555554 455555555555555555555555555555 4443322 44445555555


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHH
Q 005931          116 CRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL  195 (669)
Q Consensus       116 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~L  195 (669)
                      +..|+.++++                                  +|++.+.+. +..|.+|.||||+|+..|+.++++.|
T Consensus       148 ~~~~~~~~v~----------------------------------~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l  192 (222)
T 3ehr_A          148 AWKGYADIVQ----------------------------------LLLAKGART-DLRNIEKKLAFDMATNAACASLLKKK  192 (222)
T ss_dssp             HHHTCHHHHH----------------------------------HHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC--
T ss_pred             HHcCCHHHHH----------------------------------HHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHH
Confidence            5555544444                                  444444432 34455555555555555555555555


Q ss_pred             HhcCCccc
Q 005931          196 LNHNKDLA  203 (669)
Q Consensus       196 l~~g~~~~  203 (669)
                      ++.++...
T Consensus       193 ~~~~~~~~  200 (222)
T 3ehr_A          193 QGTDAVRT  200 (222)
T ss_dssp             --------
T ss_pred             hccchhhh
Confidence            55555444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.75  E-value=4.3e-18  Score=172.95  Aligned_cols=193  Identities=14%  Similarity=0.138  Sum_probs=142.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHH
Q 005931           70 ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLA  149 (669)
Q Consensus        70 ~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A  149 (669)
                      .|..+.++++.+...||..+.+++...-+.........+....    .....-..+++................++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            5667888999999999988777665433222110011111111    111111222333322211111111234689999


Q ss_pred             HHcCCHHHHHHHHhcCCccc-----CCCCCCCChHHHHHHhc---CCHHHHHHHHhcCCccccccCCCCChHHHHHHHcC
Q 005931          150 ISRGHTDIAREILEVRPRFA-----GKTDKNGFSPLHYASSI---GNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING  221 (669)
Q Consensus       150 ~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~Aa~~---g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g  221 (669)
                      +..|+.+.++.+++.+.+..     +..|..|.||||+|+..   |+.+++++|+++|++++.. |.+|.||||+|+..|
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~-d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTD  216 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC-CTTCCCHHHHHHHTT
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc-CCCCCCHHHHHHHcC
Confidence            99999999999999888753     34488899999999999   8999999999999999986 999999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931          222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN  268 (669)
Q Consensus       222 ~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~  268 (669)
                      +.++++.|+. .+++++.+|..|+||||+|+..|+.+++++|++.+.
T Consensus       217 ~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          217 NAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999888887 568999999999999999999999999999999744

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.74  E-value=1.1e-17  Score=139.87  Aligned_cols=92  Identities=40%  Similarity=0.586  Sum_probs=83.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931           39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ  118 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~  118 (669)
                      +|.||||+||..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|+++... |..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHc
Confidence            488999999999999999999999988 7889999999999999999999999999999987655 88999999999999


Q ss_pred             CCHHHHHHHHcCCC
Q 005931          119 GHLDVVKLLINQSW  132 (669)
Q Consensus       119 g~~eiv~~Ll~~~~  132 (669)
                      |+.+++++|++.++
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            99999999998774

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.73  E-value=2.2e-17  Score=173.84  Aligned_cols=147  Identities=18%  Similarity=0.151  Sum_probs=116.1

Q ss_pred             CCCCChHHHHHHhc-CCHHHHHHHHhcCCccccccC--CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHH
Q 005931          173 DKNGFSPLHYASSI-GNVNMTKLLLNHNKDLALQYN--KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFH  249 (669)
Q Consensus       173 d~~g~t~Lh~Aa~~-g~~eiv~~Ll~~g~~~~~~~~--~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh  249 (669)
                      +..+.|+||.|+.. |+.++++.|+++|++++.. +  ..|.||||+|+..|+.++++.|+.. +++++..|..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence            34567899999999 9999999999999999976 5  8899999999999999999888876 6899999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC--cccccccCCCCCHHHHHHHc
Q 005931          250 LAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETV--LDIYCRNHKNQTALDIIEQA  323 (669)
Q Consensus       250 ~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~--~d~~~~n~~g~T~L~~a~~~  323 (669)
                      +|+..|+.+++++|++.  +++++.+|.+|+||||+|+..++.+++++|+....  .+....+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~--Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKR--GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHC--cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999997  77889999999999999999999999999995542  34456667888998887653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.70  E-value=5e-17  Score=171.10  Aligned_cols=123  Identities=17%  Similarity=0.223  Sum_probs=74.6

Q ss_pred             CChHHHHHHHc-CCHHHHHHHHHhCCccccccC--CCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHH
Q 005931           40 LNTALHLAARF-GHVELVTEITKLCPELVAAEN--EKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLAC  116 (669)
Q Consensus        40 g~T~Lh~Aa~~-g~~e~vk~Ll~~~~~~~~~~n--~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~  116 (669)
                      +.|+||.|+.. |+.++++.|++.+.+ ++..+  ..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~-d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH
Confidence            34566666666 666666666666665 44444  56666666666666666666666666665433 556666666666


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 005931          117 RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR  165 (669)
Q Consensus       117 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~  165 (669)
                      ..|+.+++++|++++.+.+ ..+..|.||||+|+..++.+++++|++.+
T Consensus       277 ~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            6666666666666655544 34445556666666666666666655443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.68  E-value=2.1e-16  Score=131.95  Aligned_cols=88  Identities=33%  Similarity=0.496  Sum_probs=62.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHH
Q 005931          209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVL  288 (669)
Q Consensus       209 ~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~  288 (669)
                      +|+||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+..++.+++++|++.  +.+++.+|.+|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHH
Confidence            366777777777777776666654 356677777777777777777777777777775  55667777777777777777


Q ss_pred             cCCHHHHHHHH
Q 005931          289 RKNYQFVEYII  299 (669)
Q Consensus       289 ~~~~~iv~~Ll  299 (669)
                      .++.+++++|+
T Consensus        78 ~~~~~~~~~Ll   88 (93)
T 1n0q_A           78 NGHLEVVKLLL   88 (93)
T ss_dssp             TTCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            77777777777

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.68  E-value=6.1e-17  Score=140.97  Aligned_cols=108  Identities=28%  Similarity=0.304  Sum_probs=92.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHH
Q 005931          206 YNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHL  285 (669)
Q Consensus       206 ~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~  285 (669)
                      .|.+|.||||.|+..|+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++.  +.+++.+|..|+||||+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence            477888899998888888888877765 467888888999999999999999999999986  66788899999999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccccCCCCCHH
Q 005931          286 AVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL  317 (669)
Q Consensus       286 A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L  317 (669)
                      |+..++.+++++|+ +.|+|++.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll-~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLD-AKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHH-TTSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHH-HcCCCCCcCCccccccc
Confidence            99999999999999 77899999999998873

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.67  E-value=7.9e-17  Score=140.25  Aligned_cols=108  Identities=28%  Similarity=0.338  Sum_probs=92.7

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931           35 QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL  114 (669)
Q Consensus        35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~  114 (669)
                      .+|..|.||||+||..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++... |..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC-CTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCCHHHH
Confidence            4588999999999999999999999999888 7888999999999999999999999999999887654 8889999999


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccCCCCCcH
Q 005931          115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTP  145 (669)
Q Consensus       115 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~  145 (669)
                      |+..++.+++++|++++.+.+ ..+..+.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n-~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVN-ARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHH-HHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCCC-cCCcccccc
Confidence            999999999999999988876 344445544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.61  E-value=1.8e-15  Score=130.56  Aligned_cols=95  Identities=28%  Similarity=0.360  Sum_probs=82.8

Q ss_pred             hhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCc
Q 005931           31 RILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQS  110 (669)
Q Consensus        31 ~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~t  110 (669)
                      ......|.+|.|+||+||..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|+++... |..|.|
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t   92 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKT   92 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCC
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-ccCCCc
Confidence            44566799999999999999999999999999887 7888999999999999999999999999999987654 889999


Q ss_pred             HHHHHHHcCCHHHHHHH
Q 005931          111 AFSLACRQGHLDVVKLL  127 (669)
Q Consensus       111 pL~~A~~~g~~eiv~~L  127 (669)
                      |||+|+..|+.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999986

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.52  E-value=3.1e-14  Score=122.76  Aligned_cols=89  Identities=25%  Similarity=0.291  Sum_probs=45.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHH
Q 005931          207 NKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLA  286 (669)
Q Consensus       207 ~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A  286 (669)
                      +.+|.||||+|+..|+.++++.|+.. +.+++..|..|+||||+|+..++.+++++|++.  +.+++.+|..|+||||+|
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHHHHH
Confidence            44445555555555555554444433 344455555555555555555555555555553  344555555555555555


Q ss_pred             HHcCCHHHHHHH
Q 005931          287 VLRKNYQFVEYI  298 (669)
Q Consensus       287 ~~~~~~~iv~~L  298 (669)
                      +..++.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	669
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-31
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-19
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-19
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.004
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.004
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 1e-31
 Identities = 78/286 (27%), Positives = 127/286 (44%), Gaps = 9/286 (3%)

Query: 42  TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA 101
           T LH+A+  GH+ +V  + +         N K+ETPLH A   G+ EV+ +L++    V 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 102 TKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREI 161
            K   + Q+    A R GH ++VKLL+           +   TP+++A   GH +    +
Sbjct: 61  AK-AKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 162 LEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAING 221
           LE     A    K GF+PLH A+  G V + +LLL  +        K+G TPLH+A  + 
Sbjct: 119 LEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHN 176

Query: 222 RVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNT 281
            + I V  L     S       G T  H+A + ++    + L +   +   + +   G T
Sbjct: 177 NLDI-VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVT 233

Query: 282 VLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND 327
            LHLA    + + V  ++ +   +    N    T L ++ Q G   
Sbjct: 234 PLHLAAQEGHAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQEGHVP 278

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-28
 Identities = 76/301 (25%), Positives = 117/301 (38%), Gaps = 16/301 (5%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
           + LLQR AS N       T LH+AAR GH E+   + +   + V A+ +  +TPLH A  
Sbjct: 17  KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAAR 75

Query: 84  QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVES 143
            G+  +   L+E N                 A       V+   + +    +        
Sbjct: 76  IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA--LLEKEASQACMTKKGF 133

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
           TP+++A   G   +A  +LE R        KNG +PLH A    N+++ KLLL       
Sbjct: 134 TPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 192

Query: 204 LQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
                +GYTPLH+AA   +V++    L     S +  +  G T  HLA +          
Sbjct: 193 SP-AWNGYTPLHIAAKQNQVEV-ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL- 249

Query: 264 AESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQA 323
                    +  ++ G T LHL     +    + +IK  V  +        T L +    
Sbjct: 250 -LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTPLHVASHY 307

Query: 324 G 324
           G
Sbjct: 308 G 308

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 6e-28
 Identities = 81/344 (23%), Positives = 125/344 (36%), Gaps = 47/344 (13%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPEL----------------- 66
           + LLQ  A +N       T LH AAR GH  +V  + +                      
Sbjct: 50  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 109

Query: 67  ---------------VAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSA 111
                           A   +K  TPLH A   G   V+  L+E +            + 
Sbjct: 110 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTP 168

Query: 112 FSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGK 171
             +A    +LD+VKLL+ +             TP+++A  +   ++AR +L+        
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NA 226

Query: 172 TDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
               G +PLH A+  G+  M  LLL+   +  L  NK G TPLHL A  G V +    L 
Sbjct: 227 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPV-ADVLI 284

Query: 232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKN 291
                 D  T  G T  H+A  +      KF     +    + + + G + LH A  + +
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKF--LLQHQADVNAKTKLGYSPLHQAAQQGH 342

Query: 292 YQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKL 335
              V  ++K         +    T L I ++ G       LK +
Sbjct: 343 TDIVTLLLKNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 385

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 5e-19
 Identities = 50/225 (22%), Positives = 83/225 (36%), Gaps = 45/225 (20%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
           TP+++A   GH  I + +L+      G     ++    +PLH A+  G+  + K LL + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ-----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 56

Query: 200 KDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP------------------------- 234
             +  +  KD  TPLH AA  G   ++   L ++                          
Sbjct: 57  AKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115

Query: 235 -------ASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAV 287
                  AS   +T  G T  H+A ++ K    + L E       +   + G T LH+AV
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE--RDAHPNAAGKNGLTPLHVAV 173

Query: 288 LRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL 332
              N   V+ ++       +       T L I  +    + A SL
Sbjct: 174 HHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 3e-17
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 12/181 (6%)

Query: 35  QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
                  T LHLAA+ GH E+V  +           N+   TPLH    +G+  V+  L+
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 95  EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
           +    V         +   +A   G++ +VK L+     +   +  +  +P++ A  +GH
Sbjct: 285 KHGVMVDATTRMG-YTPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAAQQGH 342

Query: 155 TDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDG 210
           TDI   +L+      G    +   +G +PL  A  +G +++T +L     + +     D 
Sbjct: 343 TDIVTLLLK-----NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 397

Query: 211 Y 211
           +
Sbjct: 398 H 398

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 55/272 (20%), Positives = 99/272 (36%), Gaps = 15/272 (5%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
           N  L  A +   V+LV ++ +    +   E E   TPLH A      ++   L+  +   
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI-VELLLRHGAD 64

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
                    + F LA   G + ++KL +++      E D    T    A   G     + 
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 161 ILEVRPRFAGKT---------DKNGFSPLHYASSIGNVNMTKLLLNH---NKDLALQYNK 208
           + +       +           K G + L  A+  G+V + K+LL+    + +      +
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 209 DGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFN 268
           +      L++ +  V+ +   L    A  +     G+T   LAV        + L E  +
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243

Query: 269 TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
             + +  D  G T L LAV  K  +  E + K
Sbjct: 244 IEI-NDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 8e-24
 Identities = 51/264 (19%), Positives = 93/264 (35%), Gaps = 19/264 (7%)

Query: 75  ETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM 134
              L +A    + ++   L+E    V  +      +    A +    D+V+LL+      
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-D 64

Query: 135 EFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL 194
                   +TP  LA   G   + +  L  +     + D  GF+    A+  G V   K 
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 195 LLNHNKDL---------ALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGE 245
           L     ++           +  K G T L  AA  G V++L   L    A  +     G 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 246 TVFHLAVRFDKYNAFKFLAESFNTCLFHG-----QDQFGNTVLHLAVLRKNYQFVEYIIK 300
                       +    +    +  L HG     + + G T L LAV +K+   V+ +++
Sbjct: 184 NALI---HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240

Query: 301 ETVLDIYCRNHKNQTALDIIEQAG 324
           +  ++I   +   +TAL +  +  
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELK 264

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 4e-17
 Identities = 43/275 (15%), Positives = 79/275 (28%), Gaps = 61/275 (22%)

Query: 9   LSEAIVRNDKQALINLVGCSNKRILLQRDASLN--------TALHLAARFGHVELVTEIT 60
           L +A+   D   +         + LL+  A++N        T LH A +    ++V  + 
Sbjct: 9   LIKAVQNEDVDLV---------QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 61  KLCPEL--------------------------------VAAENEKLETPLHEACCQGNHE 88
           +   +                                 V   +    T   EA   G  +
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 89  VSAFLMEANPTVATKLNH---------ESQSAFSLACRQGHLDVVKLLINQSWL---MEF 136
              FL +    V  +               +A   A  +GH++V+K+L+++         
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL 196
                      L+      +    +L           + G +PL  A    ++ + + LL
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

Query: 197 NHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
                     + DG T L LA      KI      
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 3e-14
 Identities = 34/188 (18%), Positives = 65/188 (34%), Gaps = 12/188 (6%)

Query: 27  CSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCP---------ELVAAENEKLETP 77
            S    + + D    TA   AA +G V+ +  + K            E      +   T 
Sbjct: 92  LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151

Query: 78  LHEACCQGNHEVSAFLME---ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLM 134
           L +A  +G+ EV   L++   A+      +   +     L+     ++ +  L+      
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 135 EFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKL 194
                    TP+ LA+ + H  + + +LE        TD +G + L  A  +    + +L
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 195 LLNHNKDL 202
           L       
Sbjct: 272 LCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 10/207 (4%)

Query: 142 ESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKD 201
           ++  +  A+     D+ +++LE       + ++ G++PLH A  +   ++ +LLL H  D
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 202 LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK 261
                 K       L A       L+    S  A  +    YG T F  A  + K  A K
Sbjct: 65  --PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 262 FLAESFNTCLFHG--------QDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKN 313
           FL +                   + G T L  A  + + + ++ ++ E   D+   ++  
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 314 QTALDIIEQAGTNDDATSLKKLFKTAG 340
           + AL     +  + D  ++  L    G
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHG 209

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.0 bits (211), Expect = 1e-19
 Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 2/217 (0%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA--NP 98
           N  LH A        V E+    P L+  +++    PLH +     HE+++FL+    N 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIA 158
            +    +    + F +AC  G+L+VVK L ++    +  + + +                
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 159 REILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAA 218
            + L          DK    PLH A+S+G++ + +LL    K      +K G+TPL  A 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 219 INGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
             G     V  +    A +D +   G     +A+   
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 217

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 1e-10
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 37/212 (17%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
            P++ A         +E+L  +P    + D++G  PLH++ S     +T  LL+  +++ 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 204 LQYNKDGYTPLHLAAINGRVKILVA----------------------------------- 228
           L    D               + V                                    
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 229 -FLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAV 287
            FL  + AS      + +   H A         + L     + +   QD+ G T L  A+
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW-QDKQGWTPLFHAL 180

Query: 288 LRKNYQFVEYIIKETVLDIYCRNHKNQTALDI 319
              +      ++++   +    ++K   A D+
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (204), Expect = 8e-19
 Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 9/212 (4%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVA---AENEKLETPLHEACCQGNHEVSAFLMEAN 97
           ++ LHLA       L  E+ +     +A    +N   +TPLH A      E++  L+ A 
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 98  PTVATKLNHESQSAFSLAC----RQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG 153
                +    +                +            +    +    T ++LA   G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTP 213
           +  I   ++ +      +   NG + LH A  + N ++  LLL    D+       GY+P
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGYSP 181

Query: 214 LHLAAINGRVKILVAFLSSSPASFDRLTTYGE 245
             L       +I    L        ++    E
Sbjct: 182 YQLTWGRPSTRI-QQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 7/198 (3%)

Query: 144 TPIYLAISRGHTDIAREILEV---RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK 200
           + ++LAI      +  E++        F    +    +PLH A       + + LL    
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 63

Query: 201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRF---DKY 257
           D  L+  +                + V   S +      +        H  +       Y
Sbjct: 64  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 123

Query: 258 NAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTAL 317
                L  S    +   +   G T LHLAV  +N   V  ++K    D+    ++  +  
Sbjct: 124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-DVNRVTYQGYSPY 182

Query: 318 DIIEQAGTNDDATSLKKL 335
            +     +      L +L
Sbjct: 183 QLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 7e-06
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 209 DGYTPLHLAAINGR---VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE 265
           DG + LHLA I+        ++  +    A  +      +T  HLAV  ++    + L  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 266 SFNTCLFHGQDQF 278
           +            
Sbjct: 61  AGCDPELRDFRGN 73

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 279 GNTVLHLAVLRKNYQFVEYIIK---ETVLDIYCRNHKNQTAL 317
           G++ LHLA++ +       +I+     +  +  +N+  QT L
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.7 bits (208), Expect = 1e-18
 Identities = 38/229 (16%), Positives = 77/229 (33%), Gaps = 19/229 (8%)

Query: 7   QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPEL 66
           Q        +  Q + +    +   + +  D   NT LH      ++ELV  + K     
Sbjct: 74  QQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN- 132

Query: 67  VAAENEKLETPLHEACCQGNHEVS-----------AFLMEANPTVATKLNHESQSA---- 111
               +   E+ L +A    N+  S             L+  +    T L+H   ++    
Sbjct: 133 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 192

Query: 112 FSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG- 170
            S A +     ++  ++ +         + + +            I   +          
Sbjct: 193 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 252

Query: 171 -KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAA 218
              D NG + L+ A+ +GN+++   LL++  D  +  NK G  P+   A
Sbjct: 253 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA-NKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 32/294 (10%), Positives = 74/294 (25%), Gaps = 48/294 (16%)

Query: 39  SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANP 98
            L   L         E+ T +        +      +   H +      EV+        
Sbjct: 38  KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 97

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDI- 157
            +   ++    +         +L++VK L+       + ++  ES  +    S  + D  
Sbjct: 98  NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 157

Query: 158 -AREILEVRPRFAGKTDKNGFSPLHYASSIGNVN------------MTKLLLNHNKDLAL 204
               +L+         D    + LH+      +             +   ++        
Sbjct: 158 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 217

Query: 205 QYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLA 264
               +  +  +      +  IL                                      
Sbjct: 218 SGTNEKESKPNDKNGERKDSILE---------------------------------NLDL 244

Query: 265 ESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALD 318
           +     + + QD  G+T L++A    N   V+ ++     D +  N      +D
Sbjct: 245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA-DPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 37/262 (14%), Positives = 80/262 (30%), Gaps = 17/262 (6%)

Query: 7   QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPEL 66
           +   + ++  + Q +   +   +     +  +S     H++      E+          L
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 99

Query: 67  VAAENEKLETPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVV 124
               +E   TPLH      N E+   L++  +N      +          +         
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 125 KLLINQSWLMEFEEDSVESTPIYLAISR----GHTDIAREILEVRPRFAGK--------T 172
           + L++  +     EDS+  T ++  I      G +  A+  L++   +  K         
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 219

Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL--QYNKDGYTPLHLAAINGRVKILVAFL 230
                S  +  +     ++ + L        +    + +G T L++AA  G + I V  L
Sbjct: 220 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI-VDAL 278

Query: 231 SSSPASFDRLTTYGETVFHLAV 252
               A        G        
Sbjct: 279 LDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.5 bits (140), Expect = 6e-10
 Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 8/198 (4%)

Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
            H+  S F  +  +    +   ++N +     E+       +   +     ++   +   
Sbjct: 7   THDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNND 61

Query: 165 RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
                 +   +     H +       +     N   +L +  ++ G TPLH       ++
Sbjct: 62  SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 121

Query: 225 ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG--QDQFGNTV 282
           + V  L    ++       GE+    AV+              +        +D    T+
Sbjct: 122 L-VKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI 180

Query: 283 LHLAVLRKNYQFVEYIIK 300
           LH  ++           K
Sbjct: 181 LHHIIITSGMTGCSAAAK 198

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 2e-18
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 8   NLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELV 67
            +         + L   +  ++K +  + D    TALH A   GH E+V  + +L   + 
Sbjct: 6   MVCNLAYSGKLEELKESI-LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 68  AAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLL 127
             ++    +PLH A   G  E+   L+     V    N    +    A  +   ++  +L
Sbjct: 65  DKDDAG-WSPLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVML 122

Query: 128 INQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG 187
           +      +  +D  E+T ++ A ++G+  +   IL          D  G +PLH A    
Sbjct: 123 LEGGANPD-AKDHYEATAMHRAAAKGNLKM-IHILLYYKASTNIQDTEGNTPLHLACDEE 180

Query: 188 NVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
            V   KLL++    + ++ NK+  TPL +A   G   IL   +
Sbjct: 181 RVEEAKLLVSQGASIYIE-NKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 4e-16
 Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 6/205 (2%)

Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
               G L+ +K  I     +    D    T ++ A S GHT+I   +           D 
Sbjct: 10  LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDD 68

Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP 234
            G+SPLH A+S G   + K LL     +    N++G TPLH AA   R +I    L    
Sbjct: 69  AGWSPLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEI-AVMLLEGG 126

Query: 235 ASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQF 294
           A+ D    Y  T  H A           L   +     + QD  GNT LHLA   +  + 
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMIHIL--LYYKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 295 VEYIIKETVLDIYCRNHKNQTALDI 319
            + ++ +    IY  N + +T L +
Sbjct: 185 AKLLVSQGA-SIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 7e-10
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 4/153 (2%)

Query: 180 LHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDR 239
           +   +  G +   K  +  +K LA + ++D  T LH A   G  +I+   L       D+
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 240 LTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299
                  +   A           L         +  +Q G T LH A  +  ++    ++
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 300 KETVLDIYCRNHKNQTALDIIEQAGTNDDATSL 332
           +    +   ++H   TA+      G       L
Sbjct: 124 EGGA-NPDAKDHYEATAMHRAAAKGNLKMIHIL 155

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.5 bits (197), Expect = 2e-17
 Identities = 54/267 (20%), Positives = 80/267 (29%), Gaps = 37/267 (13%)

Query: 41  NTALHLAARFGHVELVTEITKLC--PELVAAENEKLETPLHEACCQGNHEVSAFLMEANP 98
           +TALHLA    H   +  +       E +  +N+  +T LH A   G       L  A  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 99  TVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIA 158
            V         +A  LACR        +L+        +      T              
Sbjct: 70  GVLVA-ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS------------ 116

Query: 159 REILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAA 218
                        T     +P    S     N  +      +      N DG+TPLH+A 
Sbjct: 117 ----------QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

Query: 219 INGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHG---- 274
           I+   +++     +         T G T  HLAV     +  + L       L  G    
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL-------LKAGADPT 219

Query: 275 -QDQFGNTVLHLAVLRKNYQFVEYIIK 300
            +   G T L  A+LR N      +  
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.7 bits (169), Expect = 7e-14
 Identities = 37/159 (23%), Positives = 54/159 (33%), Gaps = 14/159 (8%)

Query: 170 GKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL--QYNKDGYTPLHLAAINGRVKILV 227
           G   ++G + LH A    +      LL  +         N  G T LHLAAI G     V
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST-V 61

Query: 228 AFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL--------AESFNTCLFHGQDQFG 279
             L ++ A        G T  HLA R   +     L         ++ +T L   QD   
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 280 NTVLHLAVL---RKNYQFVEYIIKETVLDIYCRNHKNQT 315
           +T    A +          E   ++  L +   N+   T
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 42/253 (16%), Positives = 73/253 (28%), Gaps = 61/253 (24%)

Query: 9   LSEAIVRNDKQALINLVGC-SNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELV 67
           L  A++   +  L  L+G  +    L  ++    TALHLAA  G    V ++      ++
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 68  AAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLN-------------HESQSAFSL 114
            AE        H AC    H  +  L++  P+     +                  A   
Sbjct: 73  VAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 115 ACRQGHLDVVKLLIN---------------------------------QSWLMEFEEDSV 141
           +      +      +                                     +   E + 
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 142 ESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLLN 197
             TP++LA+      +   +L+     AG         G +PL  A    N  + +LL  
Sbjct: 192 GRTPLHLAVEAQAASVLELLLK-----AGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 198 HNKDLALQYNKDG 210
           H         +DG
Sbjct: 247 HGAPE----PEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 237 FDRLTTYGETVFHLAVRFDKYNAFKFLAE-SFNTCLFHGQDQFGNTVLHLAVLRKNYQFV 295
           F  +T  G+T  HLAV         FL   S        Q+  G T LHLA +      V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 296 EYIIKETVLDIYCRNHKNQ 314
           E +       +      + 
Sbjct: 62  EKLYAAGAGVLVAERGGHT 80

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 2e-17
 Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 41/225 (18%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVA---AENEKLETPLHEACCQGNHEVSAFLMEAN 97
           +T LH+A   G++  V  +  L  +        N   +TPLH A       V    +   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL-LVTA 62

Query: 98  PTVATKLNHESQSAFSLACRQGHLDVVKLLINQ----------------SWLMEFEEDSV 141
                 L+   Q+A  LAC       ++ L++                 + L        
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 142 ESTPIYLAI--------------------SRGHTDIAREILEVRPRFAGKTDKNGFSPLH 181
           + T   L                         ++    ++L            +G S LH
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 182

Query: 182 YASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL 226
            AS  G + + + L+    D +L+ N    TPL +A     + IL
Sbjct: 183 SASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 10/225 (4%)

Query: 109 QSAFSLACRQGHLDVVKLLINQSWLMEFE---EDSVESTPIYLAISRGHTDIAREILEVR 165
            +   +A  QG+L  V  L+N       E    +++  TP++LA+          +L   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-ITTLPSVVRLLVTA 62

Query: 166 PRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH---NKDLALQYNKDGYTPLHLAAINGR 222
                  D++G +  H A    +    + LL+            N DG T LH+A     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 223 VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTV 282
            + +   L             G +    AV  +  +  + L +             G++ 
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS--GSSA 180

Query: 283 LHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTND 327
           LH A  R     V  +++    D   +N  N T L +       D
Sbjct: 181 LHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMVARSRRVID 224

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLAL---QYNKDGYTPLHLAAIN 220
           +G +PLH A   GN+     L+N  +        YN    TPLHLA I 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 8e-07
 Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 3/108 (2%)

Query: 209 DGYTPLHLAAINGR---VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE 265
           DG TPLH+A + G    V  LV          D      +T  HLAV     +  + L  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 266 SFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKN 313
           +  + +   +       L                           + +
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 109

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 76  TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
           T LH A      E    L+E    +        +S    A     L +V+LL+     + 
Sbjct: 112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 171

Query: 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNM 191
            +  S  S+ ++ A  RG   + R ++      +G      + +  +PL  A S   +++
Sbjct: 172 AQMYS-GSSALHSASGRGLLPLVRTLVR-----SGADSSLKNCHNDTPLMVARSRRVIDI 225

Query: 192 TK 193
            +
Sbjct: 226 LR 227

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.1 bits (199), Expect = 3e-17
 Identities = 50/306 (16%), Positives = 85/306 (27%), Gaps = 23/306 (7%)

Query: 17  DKQALINLVGCSNKRILLQRDASLNTALHLA-ARFGHVELVTEITKLCPELVAAENEKLE 75
                ++L+  S K  +            +      +        K        +  K E
Sbjct: 32  ISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSE 91

Query: 76  TPLHEACCQGNHEVSAFLME--ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
                A   G       L     +  +   +  E+  AF LA   GHL V+  L   +  
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 134 MEFE-EDSVESTPIYLAISRGHTDIAREILEVRPRFAG--KTDKNGFSPLHYASSIGNVN 190
                  +       LA   GH  +   + E+ P  A      +N ++    A   G+ N
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 191 MTKLLLNHNKDL------ALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT-- 242
           +   LL+    L        +Y +    P     +N   ++  AF  S+P     L T  
Sbjct: 212 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS 271

Query: 243 ------YGETVFHLAVRFDKYNAFKFLAESFNTCLF---HGQDQFGNTVLHLAVLRKNYQ 293
                 Y              +  +FL                   N +L LA+   N  
Sbjct: 272 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 331

Query: 294 FVEYII 299
               ++
Sbjct: 332 ACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.8 bits (162), Expect = 2e-12
 Identities = 37/191 (19%), Positives = 58/191 (30%), Gaps = 34/191 (17%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVA--AENEKLETPLHEACCQGNHEVSAFLMEANP 98
             A  LAA  GH+ ++  + +L P       + E        A  +G+H V  FL++   
Sbjct: 162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 221

Query: 99  TVATKLNHESQS---------------------AFSLACRQGHLDVVKLLINQSWLMEFE 137
            +A    HE +                      AF L+   G  D+V             
Sbjct: 222 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL------- 274

Query: 138 EDSVESTPIYLAISRGHTDIAREILEVRP----RFAGKTDKNGFSPLHYASSIGNVNMTK 193
           +       +         D  R +L +              +    L  A  +GN     
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

Query: 194 LLLNHNKDLAL 204
           LLL+    LAL
Sbjct: 335 LLLSIPSVLAL 345

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 65.7 bits (159), Expect = 4e-12
 Identities = 29/227 (12%), Positives = 59/227 (25%), Gaps = 28/227 (12%)

Query: 105 NHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEV 164
           N+E+     L       ++ +  I+ + L        E+  I+L  ++    +  ++L +
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVR-QLLCL 67

Query: 165 RPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVK 224
                 +  K  +S  H                                  +AAI G   
Sbjct: 68  YYAHYNRNAKQLWSDAHKK-----------------------GIKSEVICFVAAITGCSS 104

Query: 225 IL--VAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTV 282
            L  +  L +S      +       F LA      +    L E   T +           
Sbjct: 105 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 164

Query: 283 LHLAVLRKNYQFVEYIIKE--TVLDIYCRNHKNQTALDIIEQAGTND 327
             LA    +   +  + +   T      +              G ++
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 79.4 bits (194), Expect = 6e-17
 Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 55/239 (23%)

Query: 41  NTALHLAARFGHVELVTEITKLCPEL-------VAAENEKLETPLHEACCQGNHEVSAFL 93
            T LH  A     E   ++     +        V A +    TPL  A       + A+L
Sbjct: 34  RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 93

Query: 94  MEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF----------------- 136
           M+A          E  +    A       ++  ++N + L                    
Sbjct: 94  MKAGADPTIYNKSERSALHQ-AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 152

Query: 137 -----------------------------EEDSVESTPIYLAISRGHTDIAREILEVRPR 167
                                         E     T ++ A    +  I + ++  +  
Sbjct: 153 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 212

Query: 168 FAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL 226
              K D++G +P+  A+  G + +   L+     +    +   +T   LA  N    I+
Sbjct: 213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV-DATDHTARQLAQANNHHNIV 270

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 41/270 (15%), Positives = 87/270 (32%), Gaps = 25/270 (9%)

Query: 75  ETPLHEAC-CQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
           E+P+       G++ ++  +   +  V       +++           +  + LI     
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 134 MEFEE-------DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSI 186
                       D  E+TP+ LA+      +   +++              +  H A++ 
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAAN 117

Query: 187 GNVNMTKLLLNH--NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASF------- 237
            +  M   +LN    K    + +++G T L + A N     + +                
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 238 ---DRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQF 294
              D     G T  H A +       K+L     +     QD+ G T + LA      + 
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEV 236

Query: 295 VEYIIKETVLDIYCRNHKNQTALDIIEQAG 324
           V Y+I++    +   +  + TA  + +   
Sbjct: 237 VMYLIQQGA-SVEAVDATDHTARQLAQANN 265

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 22/166 (13%), Positives = 55/166 (33%), Gaps = 12/166 (7%)

Query: 35  QRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLM 94
            RD  +   +  + +        +   +   ++ A NE  +                +  
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 95  EANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGH 154
            A         ++ ++A   A +  ++ +VK L+ +    + ++D    TPI LA   G 
Sbjct: 177 AARKDSE---KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 155 TDIAREILEVRPRFAG----KTDKNGFSPLHYASSIGNVNMTKLLL 196
            ++   +++      G      D    +    A +  + N+  +  
Sbjct: 234 IEVVMYLIQ-----QGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 63  CPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLD 122
                 +E  K  T LH A    N  +  +L+    +   K + + ++   LA ++G ++
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 123 VVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVR 165
           VV  LI Q   +E   D+ + T   LA +  H +I       R
Sbjct: 236 VVMYLIQQGASVE-AVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 49/249 (19%), Positives = 83/249 (33%), Gaps = 31/249 (12%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
                 A   G  E V  + +   + +   N    T LH+AC   N ++  FL+E    +
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKL------------------------LINQSWLMEF 136
               N       + A          L                         + +    E 
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159

Query: 137 EEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLL 196
               V+         R     AR+ L        +  K+G + LH A++ G   + KLL+
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 197 NHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDK 256
               D+ ++   DG+TPLH AA  G+ +     L  +    + +   G+T F +A     
Sbjct: 220 QARYDVNIKDY-DGWTPLHAAAHWGKEEA-CRILVENLCDMEAVNKVGQTAFDVADE--- 274

Query: 257 YNAFKFLAE 265
            +   +L E
Sbjct: 275 -DILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.7 bits (156), Expect = 6e-12
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 14/247 (5%)

Query: 76  TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
                AC  G+ E    L+E    +    N +  +A   AC   ++D+VK L+     + 
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
             ++           +        E L  +    G  +  G +PL  A       + +  
Sbjct: 101 QPDNEGWIPLHA--AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 196 LNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
           +N          K+    +   A          +L+S   +  R    G T  H+A    
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQ--------WLNSGHINDVRHAKSGGTALHVAAAKG 210

Query: 256 KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQT 315
                K L         + +D  G T LH A      +    +++    D+   N   QT
Sbjct: 211 YTEVLKLL--IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQT 267

Query: 316 ALDIIEQ 322
           A D+ ++
Sbjct: 268 AFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 44/223 (19%), Positives = 89/223 (39%), Gaps = 37/223 (16%)

Query: 31  RILLQRDASLN-------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACC 83
             LL+R A +N       TALH A    +V++V  + +    +   +NE    PLH A  
Sbjct: 57  LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG-WIPLHAAAS 115

Query: 84  QGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEF------- 136
            G  +++ +L+     V    N E  +   +A  +   ++++  +N+  +          
Sbjct: 116 CGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE 174

Query: 137 -------------------EEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGF 177
                                     T +++A ++G+T++ + +L          D +G+
Sbjct: 175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK-LLIQARYDVNIKDYDGW 233

Query: 178 SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAIN 220
           +PLH A+  G     ++L+ +  D+    NK G T   +A  +
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDMEAV-NKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 44/258 (17%), Positives = 79/258 (30%), Gaps = 63/258 (24%)

Query: 102 TKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIA--- 158
           TK+  +  + F  AC  G  + V  L+ +   +    +    T ++ A    + D+    
Sbjct: 34  TKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFL 92

Query: 159 -----------------------------REILEVRPRFAGKTDKNGFSPLHYASSIGNV 189
                                         E L  +    G  +  G +PL  A      
Sbjct: 93  VENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152

Query: 190 NMTK--------------------------LLLNHNKDLALQYNKDGYTPLHLAAINGRV 223
            + +                            LN      +++ K G T LH+AA  G  
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVL 283
           ++ +  L  +    +     G T  H A  + K  A + L E  N C     ++ G T  
Sbjct: 213 EV-LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEAVNKVGQTAF 269

Query: 284 HLAVLRKNYQFVEYIIKE 301
            +A       ++E + K+
Sbjct: 270 DVAD-EDILGYLEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 27  CSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGN 86
            S     ++   S  TALH+AA  G+ E++  + +   ++   + +   TPLH A   G 
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG-WTPLHAAAHWGK 244

Query: 87  HEVSAFLMEANPTVATKLNHESQSAFSLACR--QGHLDVVKLLIN 129
            E    L+E    +    N   Q+AF +A     G+L+ ++   N
Sbjct: 245 EEACRILVENLCDMEAV-NKVGQTAFDVADEDILGYLEELQKKQN 288

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 67.1 bits (162), Expect = 3e-13
 Identities = 46/208 (22%), Positives = 78/208 (37%), Gaps = 13/208 (6%)

Query: 31  RILLQRDASLN--------TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEAC 82
             LL + A LN        T+LHLAARF   +   +          +++    TPLH A 
Sbjct: 6   SDLLAQGAELNATMDKTGETSLHLAARFARADAA-KRLLDAGADANSQDNTGRTPLHAAV 64

Query: 83  CQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVE 142
                 V   L+    T      H+  +   LA R     +V+ LI     +    D+  
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AADNSG 123

Query: 143 STPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDL 202
            T ++ A +  +T+    +L        + D    +PL  A+  G+   +K LL++  + 
Sbjct: 124 KTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 203 ALQYNKDGYTPLHLAAINGRVKILVAFL 230
            +  +     P  +A+      I V  L
Sbjct: 183 EIT-DHMDRLPRDVASERLHHDI-VRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 5/210 (2%)

Query: 88  EVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIY 147
           +V + L+     +   ++   +++  LA R    D  K L++        +D+   TP++
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGA-DANSQDNTGRTPLH 61

Query: 148 LAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYN 207
            A++     + + +L  R         +G +PL  A+ +    M + L+  + D+    +
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA-D 120

Query: 208 KDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
             G T LH AA     +  V  L    A+ D      ET   LA R   Y A K L +  
Sbjct: 121 NSGKTALHWAAAVNNTEA-VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD-- 177

Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEY 297
           N       D        +A  R ++  V  
Sbjct: 178 NFANREITDHMDRLPRDVASERLHHDIVRL 207

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 5/202 (2%)

Query: 123 VVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHY 182
           V+  L+ Q   +    D    T ++LA      D A+  L      A   D  G +PLH 
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAK-RLLDAGADANSQDNTGRTPLHA 62

Query: 183 ASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTT 242
           A +   + + ++LL +          DG TPL   A    ++ +V  L ++ A  +    
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLI-LAARLAIEGMVEDLITADADINAADN 121

Query: 243 YGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKET 302
            G+T  H A   +   A        +      QD    T L LA    +Y+  + ++   
Sbjct: 122 SGKTALHWAAAVNNTEAVNI--LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 303 VLDIYCRNHKNQTALDIIEQAG 324
             +    +H ++   D+  +  
Sbjct: 180 A-NREITDHMDRLPRDVASERL 200

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 3/139 (2%)

Query: 191 MTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHL 250
           +   LL    +L    +K G T LHLAA   R       L  + A  +     G T  H 
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADA-AKRLLDAGADANSQDNTGRTPLHA 62

Query: 251 AVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRN 310
           AV  D    F+ L  +  T L          ++     R   + +   +     DI   +
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLIL--AARLAIEGMVEDLITADADINAAD 120

Query: 311 HKNQTALDIIEQAGTNDDA 329
           +  +TAL         +  
Sbjct: 121 NSGKTALHWAAAVNNTEAV 139

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 5e-10
 Identities = 20/157 (12%), Positives = 41/157 (26%), Gaps = 4/157 (2%)

Query: 42  TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA 101
             L  AA  G +E +        +     N +                            
Sbjct: 3   NELASAAARGDLEQL----TSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 102 TKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREI 161
             L   +  A      +         + +       ED+  + P++LA   GH  +   +
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 162 LEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
           ++      G  +  G +    A   G   +  L+  +
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 4e-07
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 5/155 (3%)

Query: 76  TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
             L  A  +G+ E    L++ N  V    N ++    +        +             
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNV----NAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
            +        +    +R       + L          D  G  PLH A+  G++ + + L
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 196 LNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
           + H        N  G T   LA + GR ++ V+ +
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEV-VSLM 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 18/153 (11%), Positives = 38/153 (24%), Gaps = 31/153 (20%)

Query: 178 SPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSS----- 232
           + L  A++ G++     LL +N ++  Q N  G T L +  +          L       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 233 -------------------------SPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESF 267
                                       +   +      +       + +          
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 268 NTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK 300
                  ++  G+T   LA L    + V  +  
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (128), Expect = 3e-09
 Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 6/157 (3%)

Query: 74  LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL 133
           L   L EA   G  +    LM       T     S    +              +     
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTE----VLLRAG 57

Query: 134 MEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK 193
           +  +  +          +        E+L          D    + LH+A+   +  + +
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 194 LLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFL 230
           LL+ +  D+  Q +K   T   ++  NG   +    L
Sbjct: 118 LLIKYGADVHTQ-SKFCKTAFDISIDNGNEDL-AEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (112), Expect = 4e-07
 Identities = 18/156 (11%), Positives = 44/156 (28%), Gaps = 5/156 (3%)

Query: 40  LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPT 99
           L   L  AAR G  + V    ++     A                     S   +     
Sbjct: 2   LGKKLLEAARAGQDDEV----RILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 100 VATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAR 159
           V+     +                +  ++ +       +D ++ T ++ A    H ++  
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 160 EILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
            +++          K   +    +   GN ++ ++L
Sbjct: 118 LLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 6/155 (3%)

Query: 179 PLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFD 238
            L  A+  G  +  ++L+ +        +  G +PLHLAA  G        L +  +   
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 239 RLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
           R       +   A           L    +            T LH A    + + VE +
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD---MLKMTALHWATEHNHQEVVELL 119

Query: 299 IKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLK 333
           IK    D++ ++   +TA DI    G  D A  L+
Sbjct: 120 IKYGA-DVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 18/159 (11%), Positives = 42/159 (26%), Gaps = 14/159 (8%)

Query: 144 TPIYLAISRGHTDIAREILE----VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN 199
             +  A   G  D  R ++         + G +  +  +   + S+   +    +  +  
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 200 KDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNA 259
             +         +  H   +   +K          A  +       T  H A   +    
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKH--------GADVNAKDMLKMTALHWATEHNHQEV 115

Query: 260 FKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
            +           H Q +F  T   +++   N    E +
Sbjct: 116 VEL--LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 1e-08
 Identities = 21/158 (13%), Positives = 37/158 (23%), Gaps = 5/158 (3%)

Query: 41  NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTV 100
              L  AA  G V+ V  +         A N   +T L              L +     
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62

Query: 101 ATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIARE 160
               +  S    +                             +  + + ++      A  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTL-----KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 161 ILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH 198
                     + D  G +PL  A   G  ++  +L  H
Sbjct: 118 SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-07
 Identities = 26/156 (16%), Positives = 44/156 (28%), Gaps = 5/156 (3%)

Query: 76  TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
             L  A  +G+ +    L+         LN   ++A  +         ++LL   +    
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL 195
            +                 T                 D  G  P+H A   G+  +   L
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV---PDGTGALPIHLAVQEGHTAVVSFL 120

Query: 196 LNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS 231
                DL  + +  G TPL LA   G   ++     
Sbjct: 121 A-AESDLHRR-DARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 7/151 (4%)

Query: 174 KNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS 233
           + G   L  A++ G+V   + LL+         N+ G T L +         L       
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL---- 55

Query: 234 PASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQ 293
                           +                 +    +  D  G   +HLAV   +  
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115

Query: 294 FVEYIIKETVLDIYCRNHKNQTALDIIEQAG 324
            V ++  E+  D++ R+ +  T L++  Q G
Sbjct: 116 VVSFLAAES--DLHRRDARGLTPLELALQRG 144

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 30/156 (19%), Positives = 45/156 (28%), Gaps = 6/156 (3%)

Query: 144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLA 203
             +  A +RG     R +L          ++ G + L            +LL        
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP-- 61

Query: 204 LQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFL 263
                   T     A        +  L    A  +     G    HLAV+        FL
Sbjct: 62  -NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 264 AESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII 299
           A   +    H +D  G T L LA+ R     V+ + 
Sbjct: 121 AAESD---LHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 5/120 (4%)

Query: 115 ACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDK 174
           +  +G  D+V+ +I +        D   +                + L          D 
Sbjct: 8   SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHN--AVCAGHTEIVKFLVQFGVNVNAADS 65

Query: 175 NGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHL--AAINGRVKILVAFLSS 232
           +G++PLH A+S  NV + K L+     +      D  T          G  +    FL  
Sbjct: 66  DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC-SQFLYG 124

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 4/129 (3%)

Query: 76  TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLME 135
             L ++  +G  ++   ++         L ++                +   + Q  +  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 136 FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSP--LHYASSIGNVNMTK 193
              DS   TP++ A S  +  + + ++E        T  +  +          G    ++
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 194 LLLNHNKDL 202
            L    + +
Sbjct: 121 FLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 22/123 (17%), Positives = 34/123 (27%), Gaps = 34/123 (27%)

Query: 42  TALHLAARFGHVELVTEI--------------------------------TKLCPELVAA 69
             L  ++  G  +LV  I                                       V A
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 70  ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL--ACRQGHLDVVKLL 127
            +    TPLH A    N +V  FL+E+   V      + Q+A        +G+    + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 128 INQ 130
              
Sbjct: 123 YGV 125

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 9/135 (6%)

Query: 173 DKNGFSPLHYASSIGNVNMTKLLLNHNKDL-----ALQYNKDGYTPLHLAAINGRVKIL- 226
                  L  A    ++           DL         ++   T LHLA  +     L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 227 -VAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHL 285
            V FL  +    +     G+    L       NA                ++ G T L +
Sbjct: 63  IVDFLVQNSG--NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 286 AVLRKNYQFVEYIIK 300
           A   K+    E + +
Sbjct: 121 AKRLKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 7e-07
 Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 7/127 (5%)

Query: 9   LSEAIVRND----KQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCP 64
           L EA+   D     QA  + V  + K  L        TALHLA R      +  I     
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL-HIVDFLV 68

Query: 65  ELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA--TKLNHESQSAFSLACRQGHLD 122
           +     +++              + +  L       A     N   ++   +A R  H  
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

Query: 123 VVKLLIN 129
             +LL  
Sbjct: 129 CEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 15/154 (9%)

Query: 37  DASLNTALHLAARFGHVELVTEITK-----LCPELVAAENEKLETPLHEAC---CQGNHE 88
            A+   +L  A +   +  + +             +A  +E  ET LH A     + +  
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 89  VSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYL 148
           +  FL++ +  +  +    S +            +  LL  ++ +    E     TP+ +
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES--GETPLDI 120

Query: 149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHY 182
           A    H      + +     A     N    + Y
Sbjct: 121 AKRLKHEHCEELLTQ-----ALSGRFNSHVHVEY 149

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 20/159 (12%), Positives = 45/159 (28%), Gaps = 19/159 (11%)

Query: 105 NHESQSAFSLACRQGHLDVVKLLINQ-----SWLMEFEEDSVESTPIYLAI---SRGHTD 156
                 +   A +   +  +             +        + T ++LA+    R    
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 157 IAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHL 216
           I   +++       +T K   +  +   +     +  LL           N+ G TPL +
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI--ANESGETPLDI 120

Query: 217 AAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFD 255
           A            L+ + +        G    H+ V ++
Sbjct: 121 AKRLKHEHC-EELLTQALS--------GRFNSHVHVEYE 150

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 2e-06
 Identities = 13/126 (10%), Positives = 30/126 (23%), Gaps = 3/126 (2%)

Query: 108 SQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPR 167
           S    + A  +G ++ V+ L+                   + +          +    P 
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 168 FAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILV 227
            A                  +  +         D     +  G  P+ LA   G   +  
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVAR 119

Query: 228 AFLSSS 233
              +++
Sbjct: 120 YLRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-05
 Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 5/123 (4%)

Query: 42  TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVA 101
             L  AA  G VE V    +   E  A  N                      +       
Sbjct: 5   DWLATAAARGRVEEV----RALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 102 TKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFE-EDSVESTPIYLAISRGHTDIARE 160
                 +     +        +  L++        +  D+    P+ LA   GH D+AR 
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 161 ILE 163
           +  
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 22/126 (17%), Positives = 34/126 (26%), Gaps = 3/126 (2%)

Query: 72  EKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQS 131
           E     L  A  +G  E    L+EA    A      S     +         V  L+   
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLH 57

Query: 132 WLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNM 191
                  D    T      +R        +L          D  G  P+  A  +G+ ++
Sbjct: 58  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 117

Query: 192 TKLLLN 197
            + L  
Sbjct: 118 ARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 4/121 (3%)

Query: 179 PLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFD 238
            L  A++ G V   + LL          N           +       VA L     +  
Sbjct: 6   WLATAAARGRVEEVRALLEAGA----NPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEP 61

Query: 239 RLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYI 298
                      +     +      +           +D +G   + LA    +     Y+
Sbjct: 62  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 299 I 299
            
Sbjct: 122 R 122

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.0 bits (99), Expect = 1e-05
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 3/116 (2%)

Query: 111 AFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAG 170
            F  A + G LD VK  + +   +    +       Y   +        E L ++     
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHY--AADCGQLEILEFLLLKGADIN 62

Query: 171 KTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKIL 226
             DK+  +PL  A   G+V+  KLLL+   D  ++   DG T L          +L
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTALEATDNQAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	669
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.81
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.8
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.79
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.78
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.71

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-41  Score=358.20  Aligned_cols=318  Identities=24%  Similarity=0.330  Sum_probs=269.9

Q ss_pred             cCHHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHc
Q 005931            5 MAQNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQ   84 (669)
Q Consensus         5 m~~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~   84 (669)
                      |+| ||.|+..|+++.|+.|++ . +..++.+|..|+||||+||..|+.++|++|++.|++ ++.+|..|.||||+|+..
T Consensus         1 ~Tp-L~~Aa~~g~~~~v~~Ll~-~-g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           1 LTP-LHVASFMGHLPIVKNLLQ-R-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CCH-HHHHHHHTCHHHHHHHHH-T-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHH
T ss_pred             CCh-HHHHHHCcCHHHHHHHHH-C-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHc
Confidence            567 999999999999999999 3 356788999999999999999999999999999998 789999999999999999


Q ss_pred             CCHHHHHHHHhhCCccc--------------------------------cccCCCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 005931           85 GNHEVSAFLMEANPTVA--------------------------------TKLNHESQSAFSLACRQGHLDVVKLLINQSW  132 (669)
Q Consensus        85 g~~eivk~Ll~~~~~~~--------------------------------~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~  132 (669)
                      |+.+++++|+..+++..                                ...+..+.++++.|+..++.+++++|++++.
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999997654331                                1235667888888888888888888888877


Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc--------------------------------CCCCCCCChHH
Q 005931          133 LMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFA--------------------------------GKTDKNGFSPL  180 (669)
Q Consensus       133 ~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~--------------------------------~~~d~~g~t~L  180 (669)
                      ..+ ..+..+.+||+.|+..|+.+++++|++.+.+..                                ...+..+.|||
T Consensus       157 ~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         157 HPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            665 455567788888888888888888887765431                                22344566677


Q ss_pred             HHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHH
Q 005931          181 HYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAF  260 (669)
Q Consensus       181 h~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv  260 (669)
                      ++|+..++.++++.+++.+...+.. +..|.||++.|+..++.++++.|++. +.+++..+..+.||||.++..++.+++
T Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         236 HLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHHHhCcHhHhhhhhccccccccc-cCCCCChhhhhhhcCcHHHHHHHHHC-CCccccccccccccchhhcccCcceee
Confidence            7777777778888888877777665 88889999999999999998888764 478888888999999999999999999


Q ss_pred             HHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHH
Q 005931          261 KFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSL  332 (669)
Q Consensus       261 ~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l  332 (669)
                      +++++.  +.++|.+|.+|+||||+|++.|+.++|++|+ +.|+|++.+|.+|+|||++|.+.++.+.++.|
T Consensus       314 ~~ll~~--g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll-~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         314 KFLLQH--QADVNAKTKLGYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             HHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999986  6789999999999999999999999999999 67899999999999999999999998766554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=317.21  Aligned_cols=299  Identities=27%  Similarity=0.375  Sum_probs=254.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCC
Q 005931           41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGH  120 (669)
Q Consensus        41 ~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  120 (669)
                      .||||+||..|+.++|++|++.|++ ++..|..|+||||+|+..|+.+++++|+++|+++... +..|.||||+|+..|+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~-~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTSCCHHHHHHHHTC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCC
Confidence            3999999999999999999999988 7899999999999999999999999999999987655 8999999999999999


Q ss_pred             HHHHHHHHcCCCccc--------------------------------cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcc
Q 005931          121 LDVVKLLINQSWLME--------------------------------FEEDSVESTPIYLAISRGHTDIAREILEVRPRF  168 (669)
Q Consensus       121 ~eiv~~Ll~~~~~~~--------------------------------~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~  168 (669)
                      .+++++|+.......                                ...+..+.++++.|+..++.++++.|++.+...
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~  158 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP  158 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999986543211                                123455778999999999999999999988775


Q ss_pred             cCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccc--------------------------------cCCCCChHHHH
Q 005931          169 AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQ--------------------------------YNKDGYTPLHL  216 (669)
Q Consensus       169 ~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~--------------------------------~~~~g~tpLh~  216 (669)
                       +..+.+|.+|||+|+..|+.+++++|+++|++++..                                .+..+.|||+.
T Consensus       159 -~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  237 (408)
T d1n11a_         159 -NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL  237 (408)
T ss_dssp             -TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             -CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHH
Confidence             677889999999999999999999999999876542                                23445677777


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q 005931          217 AAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVE  296 (669)
Q Consensus       217 Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~  296 (669)
                      |+..++.++++.++.. +...+..+..|.||++.|++.++.+++++|++.  +.+++..+..+.||||.|+..++.++++
T Consensus       238 a~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~--g~~~~~~~~~~~t~L~~~~~~~~~~~~~  314 (408)
T d1n11a_         238 AAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH--GVMVDATTRMGYTPLHVASHYGNIKLVK  314 (408)
T ss_dssp             HHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred             HHHhCcHhHhhhhhcc-ccccccccCCCCChhhhhhhcCcHHHHHHHHHC--CCccccccccccccchhhcccCcceeee
Confidence            7777777776666554 457777888999999999999999999999986  6678888999999999999999999999


Q ss_pred             HHHHhcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCCCCCCCCCc
Q 005931          297 YIIKETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPP  350 (669)
Q Consensus       297 ~Ll~~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  350 (669)
                      +++ +.|++++.+|.+|+||||+|++.++.+    ++++|...|+..+.....+
T Consensus       315 ~ll-~~g~~in~~d~~G~T~Lh~A~~~g~~~----iv~~Ll~~GAd~n~~d~~G  363 (408)
T d1n11a_         315 FLL-QHQADVNAKTKLGYSPLHQAAQQGHTD----IVTLLLKNGASPNEVSSDG  363 (408)
T ss_dssp             HHH-HTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCCCCSSS
T ss_pred             eec-cccccccccCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCC
Confidence            999 678999999999999999999988755    5566667787655443333

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-32  Score=274.31  Aligned_cols=267  Identities=22%  Similarity=0.228  Sum_probs=224.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHc
Q 005931           39 SLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQ  118 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~  118 (669)
                      +++|+||.|++.|+.++|++|++.|+++....+..|.||||+|+..|+.+++++|++.+...... +..+.+|.+.|+..
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~-~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccccc-ccccchhhHHHhhc
Confidence            36799999999999999999999999843344567999999999999999999999998887655 77889999999999


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc---------CCCCCCCChHHHHHHhcCCH
Q 005931          119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFA---------GKTDKNGFSPLHYASSIGNV  189 (669)
Q Consensus       119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~t~Lh~Aa~~g~~  189 (669)
                      +..+...++++...... ..+..+.++++.|+..++...+..++.......         ...+..|.||||+|+..|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             TCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             CCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence            99999999998765543 456678899999999999999999887654431         22355689999999999999


Q ss_pred             HHHHHHHhc-CCccccccCCCCChHHHHHHHcC---C-HHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          190 NMTKLLLNH-NKDLALQYNKDGYTPLHLAAING---R-VKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLA  264 (669)
Q Consensus       190 eiv~~Ll~~-g~~~~~~~~~~g~tpLh~Aa~~g---~-~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll  264 (669)
                      +++++|+++ |++++.. +..|.++++.+...+   . .++++.|++ .+++++.++..|+||||+|++.|+.+++++|+
T Consensus       162 ~~~~~Ll~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Li~-~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         162 EVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHHTSCCCTTCC-CTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhccCCCcccc-cCCCCcccccccccccchHHHHHHHHHHH-CCCCCCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            999999975 7777765 888888877665433   3 356666665 46889999999999999999999999999999


Q ss_pred             HhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccC
Q 005931          265 ESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNH  311 (669)
Q Consensus       265 ~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~  311 (669)
                      +. .+.++|.+|.+|+||||+|++.++.+++++|| +.|+|+|++|.
T Consensus       240 ~~-~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll-~~GAd~n~~d~  284 (285)
T d1wdya_         240 EQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLC-KRGASTDCGDL  284 (285)
T ss_dssp             HS-SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHSSCSCCSSC
T ss_pred             Hc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcccC
Confidence            85 36789999999999999999999999999999 88999999874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-32  Score=271.77  Aligned_cols=244  Identities=21%  Similarity=0.182  Sum_probs=172.6

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHhCC--ccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHH
Q 005931           35 QRDASLNTALHLAARFGHVELVTEITKLCP--ELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAF  112 (669)
Q Consensus        35 ~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~--~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL  112 (669)
                      ..+.+|+||||+||++|+.+++++|++.++  ..++.+|..|+||||+||..|+.+++++|++.|+++... |..|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~-d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccccc-ccccchhh
Confidence            458899999999999999999999999864  456788999999999999999999999999999987764 89999999


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcC-CHHH
Q 005931          113 SLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIG-NVNM  191 (669)
Q Consensus       113 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g-~~ei  191 (669)
                      |+|+..++.+++++|++...........    .+.........+.                  ...++....... ....
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~----~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~  140 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASD----TYLTQSQDCTPDT------------------SHAPAAVDSQPNPENEE  140 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------------
T ss_pred             hhhhccCchHHHHHHHhhccchhcccch----hhhhHHhhhcccc------------------hHHHHHHHhhcchhHHH
Confidence            9999999999999999876443211111    1100000000000                  000111111100 0111


Q ss_pred             HHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCC
Q 005931          192 TKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCL  271 (669)
Q Consensus       192 v~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~  271 (669)
                      ...+...+.+++. +|.+|.||||+|+..|+.++++.|+..........+..|.||||+|++.++.+++++|++.  +++
T Consensus       141 ~~~~~~~~~~in~-~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~--gad  217 (255)
T d1oy3d_         141 EPRDEDWRLQLEA-ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA--GAD  217 (255)
T ss_dssp             ---CCCGGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCC
T ss_pred             HHHhhhcCccccc-ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC--CCC
Confidence            2222233444444 3778888888888888888888888776555555677888888888888888888888885  577


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcc
Q 005931          272 FHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLD  305 (669)
Q Consensus       272 in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d  305 (669)
                      ++.+|.+|+||||+|+..++.+++++|+ +.|++
T Consensus       218 in~~d~~g~t~L~~A~~~~~~~i~~~Ll-~~Ga~  250 (255)
T d1oy3d_         218 PTARMYGGRTPLGSALLRPNPILARLLR-AHGAP  250 (255)
T ss_dssp             TTCCCTTSCCHHHHHHTSSCHHHHHHHH-HTTCC
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHH-HcCCC
Confidence            8888888899999999888899998888 44554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-32  Score=263.00  Aligned_cols=219  Identities=26%  Similarity=0.305  Sum_probs=103.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCC
Q 005931           41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGH  120 (669)
Q Consensus        41 ~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  120 (669)
                      ++.|+.+|..|+.+.|+.++...+..++.+|..|+||||+||..|+.+++++|++.+...... +..+.++++.++..++
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCC-CTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccc-cccccccccccccccc
Confidence            344444444444444444444444444444444444444444444444444444444333322 3334444444444444


Q ss_pred             HHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCC
Q 005931          121 LDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNK  200 (669)
Q Consensus       121 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~  200 (669)
                      .+++++|++++.+.+ ..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..++.+++++|++.+.
T Consensus        83 ~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~  160 (223)
T d1uoha_          83 DEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKA  160 (223)
T ss_dssp             HHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccc
Confidence            444444444443332 23334444444444444444444444444332 3444455555555555555555555555555


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          201 DLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE  265 (669)
Q Consensus       201 ~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~  265 (669)
                      +++.. |.+|+||||.|+..|+.++++.|++. |++++..|.+|+||||+| ..|+.+++++|++
T Consensus       161 ~i~~~-d~~g~TpL~~Aa~~g~~~~v~~LL~~-Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         161 STNIQ-DTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CSCCC-CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeeec-cCCCCceeccccccCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            54443 55555555555555555555444432 345555555555555554 2455555555543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=261.90  Aligned_cols=219  Identities=23%  Similarity=0.333  Sum_probs=148.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC
Q 005931           74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG  153 (669)
Q Consensus        74 g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g  153 (669)
                      +++.|+.+|..|+.+.++.+++.++......|..|+||||+|+..|+.+++++|++...... .....+.++++.++..+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc-ccccccccccccccccc
Confidence            35667777777777777766666666666667777777777777777777777776655443 33344566777777777


Q ss_pred             CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 005931          154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS  233 (669)
Q Consensus       154 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~  233 (669)
                      +.+++++|++.+.+. +..|.+|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..++.++++.|+ ..
T Consensus        82 ~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~-~~~~~t~L~~a~~~~~~~~~~~L~-~~  158 (223)
T d1uoha_          82 RDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILL-YY  158 (223)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             ccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCccchhhhhcCCcchhhhhc-cc
Confidence            777777777766553 566677777777777777777777777777776654 666777777777777777655444 34


Q ss_pred             CCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          234 PASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       234 ~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      +.+++..|..|+||||+|+..|+.+++++|++.  +++++.+|.+|+||||+| ..|+.+++++||
T Consensus       159 ~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~--Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ--GASIYIENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             cceeeeccCCCCceeccccccCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            456777777777777777777777777777764  556667777777777766 356667777766

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.8e-31  Score=258.33  Aligned_cols=226  Identities=23%  Similarity=0.311  Sum_probs=163.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCcccc--ccCCCCCcHHHHHHHc
Q 005931           41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVAT--KLNHESQSAFSLACRQ  118 (669)
Q Consensus        41 ~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~--~~~~~g~tpL~~A~~~  118 (669)
                      +||||+||..|+.++|+.|++..+..++.+|.+|+||||+|+..|+.+++++|+++|+++..  ..+..|.+|+++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            57888888888888888888877777788888888888888888888888888887766532  2344555555555555


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 005931          119 GHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH  198 (669)
Q Consensus       119 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~  198 (669)
                      +..++++.++..+....                                 ....+..+.|+++.++..++.++++.|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  127 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPD---------------------------------LNKITNQGVTCLHLAVGKKWFEVSQFLIEN  127 (229)
T ss_dssp             TCHHHHHHHHSSSSCCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccc---------------------------------ccccccccccccccccccchhhhhhhhhhh
Confidence            55555555554432211                                 123355566777777777777888888777


Q ss_pred             CCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Q 005931          199 NKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQF  278 (669)
Q Consensus       199 g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~  278 (669)
                      +...... +.+|+||||+|+..|+.++++.|+...+.+++.+|.+|+||||+|+.+|+.+++++|++. .+++++.+|.+
T Consensus       128 ~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-~gad~~~~d~~  205 (229)
T d1ixva_         128 GASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK-YGAEYDLVDNK  205 (229)
T ss_dssp             TCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HCCCSCCCCTT
T ss_pred             ccccccc-CCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHh-cCCCCCCcCCC
Confidence            7776664 777888888888888888888877777777777788888888888888888888888763 15577778888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcc
Q 005931          279 GNTVLHLAVLRKNYQFVEYIIKETVLD  305 (669)
Q Consensus       279 G~TpLh~A~~~~~~~iv~~Ll~~~~~d  305 (669)
                      |+||||+|+   +.+++++|+ +.|+|
T Consensus       206 g~t~l~~A~---~~~~~~~Ll-~~g~d  228 (229)
T d1ixva_         206 GAKAEDVAL---NEQVKKFFL-NNVVD  228 (229)
T ss_dssp             SCCTGGGCS---CHHHHHHHH-HHCCC
T ss_pred             CCCHHHHHh---hHHHHHHHH-HcCCC
Confidence            888888876   346778887 45554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.1e-31  Score=258.19  Aligned_cols=221  Identities=24%  Similarity=0.326  Sum_probs=150.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCcc--ccccCCCCCcHHHHHHHc
Q 005931            7 QNLSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPEL--VAAENEKLETPLHEACCQ   84 (669)
Q Consensus         7 ~~L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~--~~~~n~~g~TpLh~Aa~~   84 (669)
                      .+||.||..|+.+.++.|++ ..+..++.+|.+|.||||+|+..|+.+++++|++.+++.  ....+..|.+|+|+|+..
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLH-SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH-HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            36999999999999999998 566788999999999999999999999999999998763  356778899999999999


Q ss_pred             CCHHHHHHHHhhCCccc-cccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 005931           85 GNHEVSAFLMEANPTVA-TKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILE  163 (669)
Q Consensus        85 g~~eivk~Ll~~~~~~~-~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  163 (669)
                      +..++++.++..+.... ...+..+.++++.++..++.+++++|++.+....                            
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~----------------------------  132 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR----------------------------  132 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC----------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccc----------------------------
Confidence            99999999998876542 2235556666666666666666666666554433                            


Q ss_pred             cCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 005931          164 VRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTY  243 (669)
Q Consensus       164 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~  243 (669)
                             ..|..|.||||+|+..|+.+++++|++.+.......|.+|+||||+|+.+|+.++++.|+...|++++.+|.+
T Consensus       133 -------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~  205 (229)
T d1ixva_         133 -------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK  205 (229)
T ss_dssp             -------CCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTT
T ss_pred             -------ccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCC
Confidence                   2344444555555555555555555554432222224555555555555555555555554444555555555


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHh
Q 005931          244 GETVFHLAVRFDKYNAFKFLAES  266 (669)
Q Consensus       244 g~t~Lh~Av~~~~~~iv~~Ll~~  266 (669)
                      |+||||+|+   +.+++++|++.
T Consensus       206 g~t~l~~A~---~~~~~~~Ll~~  225 (229)
T d1ixva_         206 GAKAEDVAL---NEQVKKFFLNN  225 (229)
T ss_dssp             SCCTGGGCS---CHHHHHHHHHH
T ss_pred             CCCHHHHHh---hHHHHHHHHHc
Confidence            555555554   23455555553

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-30  Score=258.93  Aligned_cols=263  Identities=20%  Similarity=0.234  Sum_probs=231.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC
Q 005931           74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG  153 (669)
Q Consensus        74 g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g  153 (669)
                      ++|+||.|++.|+.++|++|+++|++++...+..|.||||+|+..|+.+++++|++.+.... ..+..+.+|.+.+...+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-ccccccchhhHHHhhcC
Confidence            57999999999999999999999999987777889999999999999999999999887765 44556788999999999


Q ss_pred             CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCcccc---------ccCCCCChHHHHHHHcCCHH
Q 005931          154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLAL---------QYNKDGYTPLHLAAINGRVK  224 (669)
Q Consensus       154 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~---------~~~~~g~tpLh~Aa~~g~~e  224 (669)
                      ..+....++...... ...+..+.++++.|+..++...+..+++...+...         ..+..|.||||+|+.+|+.+
T Consensus        84 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          84 SVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             CHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             Cccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence            999999999887664 55688899999999999999999999987665443         23567899999999999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCcHHHHHHHcC----CHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          225 ILVAFLSSSPASFDRLTTYGETVFHLAVRFD----KYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       225 ~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~----~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      +++.|+...+.+++..+..|.++++.+...+    ..+++++|++.  +.+++.+|..|.||||.|+..++.+++++|++
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~--ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~  240 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT--TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC--CCCCCccCCCCCCccchhhhcCcHHHHHHHHH
Confidence            9999999999999999999999988876543    35789999986  66789999999999999999999999999998


Q ss_pred             hcCcccccccCCCCCHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 005931          301 ETVLDIYCRNHKNQTALDIIEQAGTNDDATSLKKLFKTAGNIGS  344 (669)
Q Consensus       301 ~~~~d~~~~n~~g~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~~  344 (669)
                      ..|+|++.+|.+|.|||++|++.++.+    +.++|.+.||..+
T Consensus       241 ~~g~din~~d~~G~TpL~~A~~~~~~e----iv~~Ll~~GAd~n  280 (285)
T d1wdya_         241 QEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTD  280 (285)
T ss_dssp             SSSCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSSCSC
T ss_pred             cCCCCCcCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCC
Confidence            889999999999999999999998754    5667778887644

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.9e-31  Score=266.58  Aligned_cols=227  Identities=21%  Similarity=0.211  Sum_probs=151.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHH--------HhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCc
Q 005931           39 SLNTALHLAARFGHVELVTEIT--------KLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQS  110 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e~vk~Ll--------~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~t  110 (669)
                      .|+||||+||..|+.++|+.|+        +.|++ ++.+|..|+||||+|++.|+.++|++|+++|+++... +..|.|
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~-~~~g~t  109 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERS  109 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-ccccCCCCCeeeccccccccccccccccccccccccc-cccccc
Confidence            4666666666666666665553        33444 5566666666666666666666666666666665443 556666


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCcc--ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCC
Q 005931          111 AFSLACRQGHLDVVKLLINQSWLM--EFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGN  188 (669)
Q Consensus       111 pL~~A~~~g~~eiv~~Ll~~~~~~--~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~  188 (669)
                      ||+.|+..++.++++++.......  ....+....++.+.+...+..+.                               
T Consensus       110 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  158 (277)
T d2fo1e1         110 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ-------------------------------  158 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTH-------------------------------
T ss_pred             cccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccc-------------------------------
Confidence            666666666666666655432211  01223333444444444332221                               


Q ss_pred             HHHHHHHHhcCCc-------cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHH
Q 005931          189 VNMTKLLLNHNKD-------LALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFK  261 (669)
Q Consensus       189 ~eiv~~Ll~~g~~-------~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~  261 (669)
                      ...+..+.+....       .....+..|.||||.++..++.++++.++...+.+.+..|..|+||||+|++.|+.++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~  238 (277)
T d2fo1e1         159 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM  238 (277)
T ss_dssp             HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            1122222222111       011236678999999999999999998888888899999999999999999999999999


Q ss_pred             HHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          262 FLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       262 ~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      +|++.  ++++|.+|.+|+||||+|++.|+.++|++|++
T Consensus       239 ~Ll~~--gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         239 YLIQQ--GASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHT--TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHC--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99986  67889999999999999999999999999883

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=5.3e-30  Score=260.47  Aligned_cols=236  Identities=22%  Similarity=0.244  Sum_probs=164.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHH
Q 005931           38 ASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACR  117 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~  117 (669)
                      ..+.|+||.||..|+.++|++|++.|++ ++.+|..|.||||+|+..|+.++|++|++++.+.... +..+.+||+.|+.
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~-~~~~~~~L~~a~~  115 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAAS  115 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCceeeeeecccccccccc-ccccccccccccc
Confidence            4456899999999999999999999988 7888999999999999999999999999988775443 5666677777777


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh
Q 005931          118 QGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN  197 (669)
Q Consensus       118 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~  197 (669)
                      .++.++++.|++++....                                   ..|..+.+++++|+..++.+.++.++.
T Consensus       116 ~~~~~~~~~l~~~~~~~~-----------------------------------~~~~~~~~~~~~a~~~~~~~~~~~ll~  160 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVG-----------------------------------AVNSEGDTPLDIAEEEAMEELLQNEVN  160 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTT-----------------------------------CCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             ccccchhhcccccCcccc-----------------------------------cccccCccccccccccccchhcccccc
Confidence            777777776666554332                                   233444455555555555555554443


Q ss_pred             cC-CccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Q 005931          198 HN-KDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQD  276 (669)
Q Consensus       198 ~g-~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D  276 (669)
                      .. .+.... ...+..+.+        ......+..........+..|.||||+|+..|+.+++++|++.  +.++|.+|
T Consensus       161 ~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~--g~din~~~  229 (291)
T d1s70b_         161 RQGVDIEAA-RKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA--RYDVNIKD  229 (291)
T ss_dssp             HHTCCHHHH-HHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCC
T ss_pred             ccccccccc-ccccccccc--------ccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccc--eecccccc
Confidence            21 111111 000011111        1122233334445556677888888888888888888888875  56778888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHHH
Q 005931          277 QFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIEQ  322 (669)
Q Consensus       277 ~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~~  322 (669)
                      .+|+||||+|+..|+.++|++|+ +.|+|++.+|..|+||||+|.+
T Consensus       230 ~~g~TpL~~A~~~g~~~iv~lLl-~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         230 YDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCTTTSCCS
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHH
Confidence            88889999998888888888888 6788888888888899988854

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=2.2e-29  Score=255.84  Aligned_cols=231  Identities=19%  Similarity=0.282  Sum_probs=167.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC
Q 005931           74 LETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRG  153 (669)
Q Consensus        74 g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g  153 (669)
                      +.|||+.||..|+.++|++|+++|++++.. |..|.||||+|+..|+.+++++|++++.+.                   
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~-d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-------------------   99 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANI-------------------   99 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-------------------
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCcHHHHHHhcCCceeeeeeccccccc-------------------
Confidence            457777777777777777777777775443 666666666666666666666666554321                   


Q ss_pred             CHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 005931          154 HTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSS  233 (669)
Q Consensus       154 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~  233 (669)
                                      ...+..+.+||++++..++.++++.|++++...... +.++.+|+++|+..++.+.+..++...
T Consensus       100 ----------------~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ll~~~  162 (291)
T d1s70b_         100 ----------------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQ  162 (291)
T ss_dssp             ----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHH
T ss_pred             ----------------ccccccccccccccccccccchhhcccccCcccccc-cccCccccccccccccchhcccccccc
Confidence                            234556788999999999999999999999887765 899999999999999999999999877


Q ss_pred             CCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCC
Q 005931          234 PASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKN  313 (669)
Q Consensus       234 ~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g  313 (669)
                      +..+......+..+.+       ......+...  .......+..|.||||.|+..++.+++++|+ +.|+|++.+|..|
T Consensus       163 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll-~~g~din~~~~~g  232 (291)
T d1s70b_         163 GVDIEAARKEEERIML-------RDARQWLNSG--HINDVRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDG  232 (291)
T ss_dssp             TCCHHHHHHHHHHHHH-------HHHHHHHHHT--CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTC
T ss_pred             cccccccccccccccc-------ccchhhhccc--ccccccccCCCCChhhHHHHcCChhhhcccc-cceecccccccCC
Confidence            6554433322222222       1222233332  3345567889999999999999999999999 7889999999999


Q ss_pred             CCHHHHHHHcCCCchHHHHHHHHHHhCCCCCCCCCCchhhhh
Q 005931          314 QTALDIIEQAGTNDDATSLKKLFKTAGNIGSPELSPPAAEVK  355 (669)
Q Consensus       314 ~T~L~~a~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  355 (669)
                      +||||+|+..++.+.+    ++|...|+..+.....+..++.
T Consensus       233 ~TpL~~A~~~g~~~iv----~lLl~~Gadv~~~d~~G~TaL~  270 (291)
T d1s70b_         233 WTPLHAAAHWGKEEAC----RILVENLCDMEAVNKVGQTAFD  270 (291)
T ss_dssp             CCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCTTT
T ss_pred             CCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCCHHH
Confidence            9999999999976544    5555677665544443433333

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=8.6e-29  Score=246.35  Aligned_cols=241  Identities=22%  Similarity=0.211  Sum_probs=177.6

Q ss_pred             cccCHHHHHHHHhCCHHHHHHHHcCc-chhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHH
Q 005931            3 QGMAQNLSEAIVRNDKQALINLVGCS-NKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEA   81 (669)
Q Consensus         3 ~~m~~~L~~Ai~~gd~~~l~~ll~~~-~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~A   81 (669)
                      .|.++ ||.|++.|+.+.++.|++.+ +...++.+|..|.||||+||..|+.+++++|++.|++ ++.+|.+|.||||+|
T Consensus         8 ~G~t~-Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           8 DGDTA-LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTALHLA   85 (255)
T ss_dssp             TCCCH-HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCHHHHH
T ss_pred             CCCCH-HHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc-ccccccccchhhhhh
Confidence            35666 99999999999999999832 3456788899999999999999999999999999988 788999999999999


Q ss_pred             HHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 005931           82 CCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREI  161 (669)
Q Consensus        82 a~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~L  161 (669)
                      +..|+.+++++|++.+........    ..+.........+.                  ....+..............+
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~----~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~  143 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDAS----DTYLTQSQDCTPDT------------------SHAPAAVDSQPNPENEEEPR  143 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC---------------------------------------------------------
T ss_pred             hccCchHHHHHHHhhccchhcccc----hhhhhHHhhhcccc------------------hHHHHHHHhhcchhHHHHHH
Confidence            999999999999987654322111    11111100000000                  00011111111111111122


Q ss_pred             HhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 005931          162 LEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLT  241 (669)
Q Consensus       162 l~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d  241 (669)
                      ........+.+|.+|.||||+|+..++.+++++|++++++.....+..|.||||+|+..|+.++++.|++. +++++.+|
T Consensus       144 ~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~-gadin~~d  222 (255)
T d1oy3d_         144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARM  222 (255)
T ss_dssp             CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             hhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC-CCCCCCCC
Confidence            22222234667889999999999999999999999999998877788899999999999999999888764 58899999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 005931          242 TYGETVFHLAVRFDKYNAFKFLAESFN  268 (669)
Q Consensus       242 ~~g~t~Lh~Av~~~~~~iv~~Ll~~~~  268 (669)
                      ..|+||||+|+++++.+++++|++++.
T Consensus       223 ~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         223 YGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             TTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999999999999999999999744

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.4e-29  Score=255.08  Aligned_cols=231  Identities=19%  Similarity=0.270  Sum_probs=157.0

Q ss_pred             ccCHHHHHHHHhCCHHHHHHHHcCc------chhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcH
Q 005931            4 GMAQNLSEAIVRNDKQALINLVGCS------NKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETP   77 (669)
Q Consensus         4 ~m~~~L~~Ai~~gd~~~l~~ll~~~------~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~Tp   77 (669)
                      +.+| ||.|+..|+.+.++.|+...      .+..++.+|..|+||||+|+..|+.++|++|++.|++ ++.+|..|.||
T Consensus        33 g~T~-Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g~t~  110 (277)
T d2fo1e1          33 NRTV-LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSA  110 (277)
T ss_dssp             CCCH-HHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCH
T ss_pred             CccH-HHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc-ccccccccccc
Confidence            5676 99999999999999887621      1235788999999999999999999999999999998 88899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCc--cccccCCCCCcHHHHHHHcCCHH---HHHHHHcCCCccccccCCCCCcHHHHHHHc
Q 005931           78 LHEACCQGNHEVSAFLMEANPT--VATKLNHESQSAFSLACRQGHLD---VVKLLINQSWLMEFEEDSVESTPIYLAISR  152 (669)
Q Consensus        78 Lh~Aa~~g~~eivk~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~e---iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~  152 (669)
                      |++|+..|+.++++++......  .....+..+.++.+.+...+..+   .+..+.+........               
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  175 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD---------------  175 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCC---------------
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccc---------------
Confidence            9999999999999999875432  22334778889999998877654   333333332211100               


Q ss_pred             CCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHh-cCCccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005931          153 GHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLN-HNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS  231 (669)
Q Consensus       153 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~-~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~  231 (669)
                                  ........+..|.||||+++..++.+++++++. .+.+... .|..|.||||+|+..|+.++++.|++
T Consensus       176 ------------~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~-~d~~g~tpL~~A~~~g~~~iv~~Ll~  242 (277)
T d2fo1e1         176 ------------GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK-QDEDGKTPIMLAAQEGRIEVVMYLIQ  242 (277)
T ss_dssp             ------------SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ------------ccccccccccCCCCccccccccccccccccccccccccccc-cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                        000112334456666666666666666655443 3333332 36666666666666666666655554


Q ss_pred             cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          232 SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE  265 (669)
Q Consensus       232 ~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~  265 (669)
                      . +++++.+|.+|+||||+|+++|+.+++++|++
T Consensus       243 ~-gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         243 Q-GASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             T-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             C-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3 45566666666666666666666666666654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-27  Score=229.56  Aligned_cols=222  Identities=21%  Similarity=0.237  Sum_probs=140.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHH----hCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHH
Q 005931           38 ASLNTALHLAARFGHVELVTEITK----LCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFS  113 (669)
Q Consensus        38 ~~g~T~Lh~Aa~~g~~e~vk~Ll~----~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~  113 (669)
                      .+|+||||+||.+|+.++|+.|++    .+.+ ++.+|..|+||||+|+..|+.+++++|++.+++.... ...+.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCccCCCCCccceehhccccccccccccccccccccc-ccccccccc
Confidence            368999999999999998888875    4555 6788888999999999999999999999888776554 667778888


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHH
Q 005931          114 LACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTK  193 (669)
Q Consensus       114 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~  193 (669)
                      .|...++.++++.+..........                               .+.......++|+.+.........+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~  127 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLD-------------------------------LEARNYDGLTALHVAVNTECQETVQ  127 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCC-------------------------------TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             cccccccccchhhhhhcccccccc-------------------------------ccccccccccccccccccccchhhh
Confidence            888888888777766533221100                               0112223344455555444455555


Q ss_pred             HHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc
Q 005931          194 LLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFH  273 (669)
Q Consensus       194 ~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in  273 (669)
                      .|.....+........+.++|+.|+..+...+++.++.. +...+.+|..|.||||+|+.+|+.+++++|++.  +++++
T Consensus       128 ~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--Gad~n  204 (228)
T d1k1aa_         128 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS--GADSS  204 (228)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTT
T ss_pred             hhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhh-ccccccccccCcchHHHHHHcCCHHHHHHHHHC--CCCCC
Confidence            555444444444444555555555555555555444433 244555555566666666666666666666654  44556


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHH
Q 005931          274 GQDQFGNTVLHLAVLRKNYQFV  295 (669)
Q Consensus       274 ~~D~~G~TpLh~A~~~~~~~iv  295 (669)
                      .+|.+|+||||+|+++|+.++|
T Consensus       205 ~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         205 LKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             CCCTTSCCTTTTCSSHHHHHHH
T ss_pred             CCCCCCCCHHHHHHhCCCcccc
Confidence            6666666666666666665554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-26  Score=224.23  Aligned_cols=219  Identities=22%  Similarity=0.168  Sum_probs=162.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh----hCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHH
Q 005931           73 KLETPLHEACCQGNHEVSAFLME----ANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYL  148 (669)
Q Consensus        73 ~g~TpLh~Aa~~g~~eivk~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~  148 (669)
                      +|+||||+||..|+.++++.|++    .|.++.. .|..|.||||+|+..|+.+++++|++++...+ .....+.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~-~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCc-cCCCCCccceehhccccccccccccccccccc-cccccccccccc
Confidence            58888888888888888888875    4555433 36667777777777777777776666655443 223334445555


Q ss_pred             HHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHH
Q 005931          149 AISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA  228 (669)
Q Consensus       149 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~  228 (669)
                      |...++.++++.+.......                               ............++|+.+...........
T Consensus        80 a~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  128 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPG-------------------------------TLDLEARNYDGLTALHVAVNTECQETVQL  128 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTT-------------------------------SCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             ccccccccchhhhhhccccc-------------------------------cccccccccccccccccccccccchhhhh
Confidence            55555544444443322111                               01111225567889999999999999888


Q ss_pred             HHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCccccc
Q 005931          229 FLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKETVLDIYC  308 (669)
Q Consensus       229 LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~  308 (669)
                      +..............|.++++.|+..+...+++.+++.  +...+.+|..|+||||+|+..|+.+++++|+ +.|+|++.
T Consensus       129 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~Gad~n~  205 (228)
T d1k1aa_         129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSL  205 (228)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTC
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhhhhhhhhhh--ccccccccccCcchHHHHHHcCCHHHHHHHH-HCCCCCCC
Confidence            88777666677788999999999999999999999986  5677889999999999999999999999999 67899999


Q ss_pred             ccCCCCCHHHHHHHcCCCc
Q 005931          309 RNHKNQTALDIIEQAGTND  327 (669)
Q Consensus       309 ~n~~g~T~L~~a~~~~~~~  327 (669)
                      +|.+|+|||++|.+.++.+
T Consensus       206 ~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         206 KNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             CCTTSCCTTTTCSSHHHHH
T ss_pred             CCCCCCCHHHHHHhCCCcc
Confidence            9999999999998776543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-27  Score=231.86  Aligned_cols=190  Identities=22%  Similarity=0.260  Sum_probs=119.6

Q ss_pred             CCChHHHHHHHcCCHHHHH----HHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHH
Q 005931           39 SLNTALHLAARFGHVELVT----EITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSL  114 (669)
Q Consensus        39 ~g~T~Lh~Aa~~g~~e~vk----~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~  114 (669)
                      +|+||||+|+..|+.++++    ++...+.+ ++.+|..|+||||+|+..|+.+++++|++.|+++... |..|.|||+.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~-d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC-CTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCcccccccccccccccccccccccccccc-cccccccccc
Confidence            5899999999999965554    44455655 7889999999999999999999999999999987654 8899999999


Q ss_pred             HHHcCCHHHHHHHHcCCCccc-----cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCH
Q 005931          115 ACRQGHLDVVKLLINQSWLME-----FEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNV  189 (669)
Q Consensus       115 A~~~g~~eiv~~Ll~~~~~~~-----~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~  189 (669)
                      |+..++.++++.|++.+....     ......+.||||.|+..++.+++++++..+.......+.+|.||||+|+..|+.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH
Confidence            999999999999987654322     112222344444444444444444444444444333334444444444444444


Q ss_pred             HHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 005931          190 NMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLS  231 (669)
Q Consensus       190 eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~  231 (669)
                      +++++|+++|++++.. |.+|+||||+|+..++.++++.|++
T Consensus       159 ~~v~~Ll~~gad~~~~-~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         159 DLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             HHHHHHHTTTCCSCCC-CTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             HHHHHHHhcCCccccc-CCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            4444444444444433 4444444444444444444444443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=3.9e-26  Score=219.65  Aligned_cols=205  Identities=20%  Similarity=0.251  Sum_probs=124.1

Q ss_pred             HHHHHHHHhCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCC
Q 005931           54 ELVTEITKLCPELVAA-ENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSW  132 (669)
Q Consensus        54 e~vk~Ll~~~~~~~~~-~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~  132 (669)
                      |+|++|++.|++ ++. .|.+|.||||+||..|+.+++++|++.|+++... +..+.+                      
T Consensus         3 ~~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~-~~~~~~----------------------   58 (209)
T d1ot8a_           3 QVISDLLAQGAE-LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQ-DNTGRT----------------------   58 (209)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCC----------------------
T ss_pred             HHHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccc-cccccc----------------------
Confidence            555555555555 332 3555555555555555555555555555554332 444444                      


Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCCh
Q 005931          133 LMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYT  212 (669)
Q Consensus       133 ~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~t  212 (669)
                                  +++.++..++.....................+.++.+.+.........+.|...+.+++.. +..|.|
T Consensus        59 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~~~~t  125 (209)
T d1ot8a_          59 ------------PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA-DNSGKT  125 (209)
T ss_dssp             ------------HHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCB-CTTSCB
T ss_pred             ------------cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc-CCCCCC
Confidence                        4444444444444444443333333334445556666666666666666666666666554 666777


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCH
Q 005931          213 PLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNY  292 (669)
Q Consensus       213 pLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~  292 (669)
                      ||+.++.++..+++..++.. +.+++..|..|.||||+|+..|+.+++++|++.  +++++.+|.+|+||||+|+++|+.
T Consensus       126 ~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~--gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         126 ALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPLFLAAREGSYEASKALLDN--FANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cchhhcccCcceeeeeeccc-cccccccccccccccchhccccHHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCH
Confidence            77777777777766555554 355666777777777777777777777777775  456677777777777777777777


Q ss_pred             HHHHHH
Q 005931          293 QFVEYI  298 (669)
Q Consensus       293 ~iv~~L  298 (669)
                      ++|++|
T Consensus       203 ~iv~lL  208 (209)
T d1ot8a_         203 DIVRLL  208 (209)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            777764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.3e-25  Score=216.08  Aligned_cols=205  Identities=21%  Similarity=0.246  Sum_probs=167.2

Q ss_pred             HHHHHHHHcCcchhhhcc-cCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhh
Q 005931           18 KQALINLVGCSNKRILLQ-RDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEA   96 (669)
Q Consensus        18 ~~~l~~ll~~~~~~~l~~-~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~   96 (669)
                      -|.|+.|++ .+ ..++. .|.+|+||||+||..|+.+++++|++.+++ ++.++..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~-~g-~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLA-QG-AELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHH-HH-HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHH-CC-CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-cccccccccccccccccccccccccccccc
Confidence            478899998 43 45666 599999999999999999999999999988 788999999999999999999998888887


Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCC
Q 005931           97 NPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNG  176 (669)
Q Consensus        97 ~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  176 (669)
                      ...........+.++.+.+.........+.|.+.+.+.+ ..+..|.|||+.++..+..++++.+++.+.+. +..|.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhccccc-ccCCCCCCcchhhcccCcceeeeeeccccccc-ccccccc
Confidence            766666667778888888888888888888888776654 45566778888888888888888888776664 5667778


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHH
Q 005931          177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVA  228 (669)
Q Consensus       177 ~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~  228 (669)
                      .||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+++|+.++++.
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad~n~~-d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFANREIT-DHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCCHHHHhh
Confidence            88888888888888888888888877754 7778888888888888877654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.1e-26  Score=221.95  Aligned_cols=191  Identities=21%  Similarity=0.192  Sum_probs=125.2

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHH
Q 005931           73 KLETPLHEACCQGNHE----VSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYL  148 (669)
Q Consensus        73 ~g~TpLh~Aa~~g~~e----ivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~  148 (669)
                      +|+||||+|+..|+.+    +++++...+.+++. .|..|+||||+|+..|+.+++++|++.+.+.+ ..+..|.|||+.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~-~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCccc-CCCCCCcccccccccccccccccccccccccc-cccccccccccc
Confidence            4889999999998864    44455556666554 47788888888888888888888888877665 456667788888


Q ss_pred             HHHcCCHHHHHHHHhcCCcc-----cCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH
Q 005931          149 AISRGHTDIAREILEVRPRF-----AGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV  223 (669)
Q Consensus       149 A~~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~  223 (669)
                      ++..++.++++.|++.+...     .......|.||||.|+..++.+++++|++.+...+...+.+|.||||+|+..|+.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH
Confidence            88888888888777654321     2233444566666666666666666666666666655455566666666666666


Q ss_pred             HHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAES  266 (669)
Q Consensus       224 e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~  266 (669)
                      ++++.|+.. +++++.+|.+|+||||+|+..++.+++++|++.
T Consensus       159 ~~v~~Ll~~-gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         159 DLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             HHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             HHHHHHHhc-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            666555543 355666666666666666666666666666554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=1.7e-27  Score=248.14  Aligned_cols=241  Identities=18%  Similarity=0.112  Sum_probs=149.4

Q ss_pred             hhcccCCCCChHHHHHHHcCCHHHHHH---HHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccc-cCCC
Q 005931           32 ILLQRDASLNTALHLAARFGHVELVTE---ITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATK-LNHE  107 (669)
Q Consensus        32 ~l~~~d~~g~T~Lh~Aa~~g~~e~vk~---Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~-~~~~  107 (669)
                      .+..++..|.|+||+||.+|+.+++++   |++.+++ ++.+|..|+||||+||+.|+.++|++|++.|+++... .+.+
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            455667888888888888888777665   5666766 7778888888888888888888888888888876544 2345


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHcCCCcccc--ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHh
Q 005931          108 SQSAFSLACRQGHLDVVKLLINQSWLMEF--EEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASS  185 (669)
Q Consensus       108 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~--~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~  185 (669)
                      |.||||+|+..|+.++|++|++.+.....  ..+..+.||++.|+.+|+.+++++|++.+.+.        .++.+.++.
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~--------~~~~~~~~~  232 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML--------AYAEIHEFE  232 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH--------HHHHHCTTT
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc--------chHHHHHHH
Confidence            78888888888888888888877654321  11122334445555555555555555443221        122222222


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCC-CCccccc-------CCCCcHHHHHHHcCCH
Q 005931          186 IGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSP-ASFDRLT-------TYGETVFHLAVRFDKY  257 (669)
Q Consensus       186 ~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~-~~i~~~d-------~~g~t~Lh~Av~~~~~  257 (669)
                      .++..                    .++++.+...+..+....+..... ...+..+       ..+.++++.|+..++.
T Consensus       233 ~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~l  292 (346)
T d2ajaa1         233 YGEKY--------------------VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLL  292 (346)
T ss_dssp             TTTTT--------------------HHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGH
T ss_pred             cCcHh--------------------hhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChH
Confidence            22222                    234444433333332222221111 0111111       1234678888889999


Q ss_pred             HHHHHHHHhcC---CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          258 NAFKFLAESFN---TCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE  301 (669)
Q Consensus       258 ~iv~~Ll~~~~---~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~  301 (669)
                      +++++|++...   ....+..+.+|+||||+|++.|+.++|++||+-
T Consensus       293 d~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         293 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            99999998643   123345567899999999999999999999943

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=192.44  Aligned_cols=154  Identities=22%  Similarity=0.252  Sum_probs=136.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCH
Q 005931           42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL  121 (669)
Q Consensus        42 T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  121 (669)
                      ++||+||..|+.++|+.|++.|++ ++.+|..|.||||+|+ .|+.+++++|++.++++... +..+.++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~-~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-cCccCCcccccccccc-cccccccccccccccccccc-cccCccccccccccccc
Confidence            789999999999999999999988 7889999999999875 78999999999999887654 88899999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcC
Q 005931          122 DVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHN  199 (669)
Q Consensus       122 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g  199 (669)
                      +.++.|++.+...+ ..+..+.+|++.|+..++.++++.|+++++...+.+|.+|.||||+|+..|+.+++++|+++|
T Consensus        80 ~~~~~l~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999998877665 456678889999999999999999998888667888888999999999999999999998876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=184.96  Aligned_cols=151  Identities=24%  Similarity=0.291  Sum_probs=132.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH
Q 005931          144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV  223 (669)
Q Consensus       144 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~  223 (669)
                      ..|+.|+..|+.++++.|++.++..++..|..|+||||+|+. |+.+++++|++++.+++.. +..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            468999999999999999987766678889999999998864 7889999999999998875 78899999999999999


Q ss_pred             HHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005931          224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIK  300 (669)
Q Consensus       224 e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~  300 (669)
                      ++++.++..+ .+++.+|..|+||||+|++.|+.+++++|++   +.+++.+|.+|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~l~~~-~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~---~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          82 DTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAA---ESDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT---TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccccccc-cccccccCCCCeeeccccccccccccccccc---cccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9988887755 6788889999999999999999999998875   56788899999999999999999999999984

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.7e-22  Score=182.19  Aligned_cols=153  Identities=20%  Similarity=0.283  Sum_probs=119.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCH
Q 005931          144 TPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRV  223 (669)
Q Consensus       144 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~  223 (669)
                      ++||.|+..|+.++++.|++.+.++ +..|.+|.||||+|+ .|+.+++++|+++++++... +.++.++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~-~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccccc-cccCccccccccccccc
Confidence            5778888888888888888877764 667788888888665 67888888888888887765 77788888888888888


Q ss_pred             HHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          224 KILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE  301 (669)
Q Consensus       224 e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~  301 (669)
                      +.+..++... ..++..+..|.+|+|+|+..++.+++++|++.+ ..+.+.+|.+|.||||+|+..++.+++++|+++
T Consensus        80 ~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          80 DTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccc-cccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            8877766544 567777888888888888888888888888763 346677888888888888888888888888743

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=5.2e-24  Score=221.47  Aligned_cols=125  Identities=22%  Similarity=0.210  Sum_probs=102.7

Q ss_pred             HHHHHHHhCCHHHHHHH--HcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccC--CCCCcHHHHHHH
Q 005931            8 NLSEAIVRNDKQALINL--VGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAEN--EKLETPLHEACC   83 (669)
Q Consensus         8 ~L~~Ai~~gd~~~l~~l--l~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n--~~g~TpLh~Aa~   83 (669)
                      +|+.|+..|+.+.++.+  +. ..+..++.+|..|.||||+||+.||.++|++|++.+++ ++..+  ..|+||||+||.
T Consensus        93 ~L~~Aa~~g~~~~~~~~~~L~-~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-~~~~~~~~~g~t~L~~Aa~  170 (346)
T d2ajaa1          93 ICFVAAITGCSSALDTLCLLL-TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT-EIMAMIQAENYHAFRLAAE  170 (346)
T ss_dssp             HHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-THHHHHSHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHH-hCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccccCCCChhHHHHH
Confidence            49999999999888764  22 34567888999999999999999999999999999988 44443  469999999999


Q ss_pred             cCCHHHHHHHHhhCCcccc--ccCCCCCcHHHHHHHcCCHHHHHHHHcCCCcc
Q 005931           84 QGNHEVSAFLMEANPTVAT--KLNHESQSAFSLACRQGHLDVVKLLINQSWLM  134 (669)
Q Consensus        84 ~g~~eivk~Ll~~~~~~~~--~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~  134 (669)
                      .|+.++|++|++.|+....  ..+..+.||++.|+.+|+.+++++|++.+.+.
T Consensus       171 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         171 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             TTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             HhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            9999999999999876532  23456778889999999999999999987654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-22  Score=182.87  Aligned_cols=150  Identities=24%  Similarity=0.303  Sum_probs=81.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHH
Q 005931           44 LHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDV  123 (669)
Q Consensus        44 Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei  123 (669)
                      ||.||..|+.++|++|++.+...++..|..|+||||+|+ .|+.+++++|++++.++... +..|.+|++.++..++.++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccc-ccccccccccccccccccc
Confidence            666666666666666665544335566666666666554 35566666666665554433 4455555555555555555


Q ss_pred             HHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhc
Q 005931          124 VKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNH  198 (669)
Q Consensus       124 v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~  198 (669)
                      ++++++.+.+.+ ..+..|.||||+|+..|+.+++++|++ +.+ .+.+|.+|.||||+|+..|+.+++++|++|
T Consensus        84 ~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~~-~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          84 LKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAA-ESD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHT-TSC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccc-cccCCCCeeeccccccccccccccccc-ccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            555555554433 233445555555555555555554442 222 244455555555555555555555555544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6.2e-22  Score=180.07  Aligned_cols=147  Identities=22%  Similarity=0.339  Sum_probs=89.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCH
Q 005931           76 TPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHT  155 (669)
Q Consensus        76 TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~  155 (669)
                      ||||.||+.|+.++|++|+++|++..  .+..|.||||+|+..++.++++.++....... .....+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCcccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            55555555555555555555555433  24555555555555555555555554443332 2233344566666666666


Q ss_pred             HHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHH
Q 005931          156 DIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILV  227 (669)
Q Consensus       156 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~  227 (669)
                      ++++++++.+.+. ...|.+|.||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+.+|+.++++
T Consensus        81 ~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~-d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_          81 NIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             eeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCccc-CCCCCCHHHHHHHcCCHHHHH
Confidence            6666666655543 455677777777777777777777777777777654 777777777777777777754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.3e-21  Score=177.96  Aligned_cols=151  Identities=18%  Similarity=0.270  Sum_probs=136.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcC
Q 005931           40 LNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQG  119 (669)
Q Consensus        40 g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  119 (669)
                      ..||||.||+.|+.++|++|++.+++ .+ .|..|+||||+|+..++.++++.++......... +..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCC-cc-cccCCCcccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            35999999999999999999999987 33 6899999999999999999999999988776544 778889999999999


Q ss_pred             CHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHH
Q 005931          120 HLDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLL  195 (669)
Q Consensus       120 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~L  195 (669)
                      +.++++++++.+.+.. ..+..|.||||+|+..|+.+++++|++.+.+. +..|.+|.||||+|+.+|+.+++++|
T Consensus        79 ~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999988765 56778999999999999999999999998875 77899999999999999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.7e-23  Score=208.06  Aligned_cols=177  Identities=18%  Similarity=0.121  Sum_probs=93.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCH-------HHHHHHHhcCCccccccCCCCC
Q 005931          139 DSVESTPIYLAISRGHTDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNV-------NMTKLLLNHNKDLALQYNKDGY  211 (669)
Q Consensus       139 ~~~~~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~-------eiv~~Ll~~g~~~~~~~~~~g~  211 (669)
                      |..|.||||+|+..|+.++++.|++.+.+. +.+|..|.||||.||..++.       ++++++..   .... .|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~-~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLIL-EDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGE-ECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhh-cccccC
Confidence            344445555555555555555555544432 34444555555555543321       22222221   1121 245555


Q ss_pred             hHHHHHHHcCC-----------HH-HHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHH-hcCCCCCccCCCC
Q 005931          212 TPLHLAAINGR-----------VK-ILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAE-SFNTCLFHGQDQF  278 (669)
Q Consensus       212 tpLh~Aa~~g~-----------~e-~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~-~~~~~~in~~D~~  278 (669)
                      ||||.++..+.           .+ ++..++.............+.++++.+........+..+.. ......+|.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            55555543322           11 23344445544555555666666666665555444433211 1112347899999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcccccccCCCCCHHHHHH
Q 005931          279 GNTVLHLAVLRKNYQFVEYIIKETVLDIYCRNHKNQTALDIIE  321 (669)
Q Consensus       279 G~TpLh~A~~~~~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a~  321 (669)
                      |+||||+|++.|+.++|++|+ +.|+|++.+|+.|+||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll-~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALL-DYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHH-HTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999 679999999999999999874

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=5.8e-22  Score=201.89  Aligned_cols=184  Identities=14%  Similarity=0.096  Sum_probs=112.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCH-------HHHHHHHcCCCccccccCCCCC
Q 005931           71 NEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL-------DVVKLLINQSWLMEFEEDSVES  143 (669)
Q Consensus        71 n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~-------eiv~~Ll~~~~~~~~~~~~~~~  143 (669)
                      |..|+||||+||..|+.++|++|++.|+++... |..|+||||.||..++.       ++++++.+..    ...+..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~----~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL----ILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG----GEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcC-CcccccHHHHhhhcccchhhhhHHHHHHHHhhhh----hhcccccC
Confidence            778888888888888888888888888877654 77888888888876542       3444433221    13344566


Q ss_pred             cHHHHHHHcCC----HHHHHHHHhcCCcccCCCCCCCChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHH
Q 005931          144 TPIYLAISRGH----TDIAREILEVRPRFAGKTDKNGFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAI  219 (669)
Q Consensus       144 t~L~~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~  219 (669)
                      ||||.++..+.    ...+++.+                          ..++.++++.+..........+.++++.+..
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  232 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYL--------------------------DILMGWIVKKQNRPIQSGTNEKESKPNDKNG  232 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHH--------------------------HHHHHHHHHGGGCCEEEC-------------
T ss_pred             CHHHHHHHHhCccccHHHHHHHH--------------------------HHHHHHHHhcCCcchhcccccccchhHHHHh
Confidence            66666553322    11111111                          1245566666665555445566666666554


Q ss_pred             cCCHHHHHHHHh--cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHH
Q 005931          220 NGRVKILVAFLS--SSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAV  287 (669)
Q Consensus       220 ~g~~e~v~~LL~--~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~  287 (669)
                      ......+..+..  .....+|.+|.+|+||||+|+++|+.+++++|++.  +++++.+|..|.||||+|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~--GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         233 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY--GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ---CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT--TCCTTCCCTTSCCGGGGTC
T ss_pred             cchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHcC
Confidence            444333222111  01123688899999999999999999999999996  7788999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.7e-20  Score=163.03  Aligned_cols=118  Identities=24%  Similarity=0.245  Sum_probs=57.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCC
Q 005931           41 NTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGH  120 (669)
Q Consensus        41 ~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  120 (669)
                      .++||+||..|+.++|++|++.|.+ ++.+|..|.||||.|+ .|+.+++++|+++|+++....+..+.||||+|+..|+
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            3455555555555555555555554 4555555555555442 4555555555555555443322222344555555555


Q ss_pred             HHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 005931          121 LDVVKLLINQSWLMEFEEDSVESTPIYLAISRGHTDIAREI  161 (669)
Q Consensus       121 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~L  161 (669)
                      .+++++|++.+.+.+ ..+..|.||||+|+..|+.+++++|
T Consensus        82 ~~~v~~Ll~~ga~~~-~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          82 LDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccc-cccCCCCCHHHHHHHcCCHHHHHHH
Confidence            555555554444333 2333344444444444444444444

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.9e-20  Score=161.33  Aligned_cols=119  Identities=18%  Similarity=0.167  Sum_probs=90.8

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC-cHHHHHHHc
Q 005931          176 GFSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGE-TVFHLAVRF  254 (669)
Q Consensus       176 g~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~-t~Lh~Av~~  254 (669)
                      +.++||+|+..|+.+++++|+++|++++.. +.+|.||+|.|+ .|+.++++.|+.. +.+++..+..|. ||||+|+++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccc-cccccccccccc-ccccccccccccc-cccccccccccccccccccccc
Confidence            446788888888888888888888777765 777888887654 6777877766654 466777776665 588888888


Q ss_pred             CCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 005931          255 DKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYII  299 (669)
Q Consensus       255 ~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll  299 (669)
                      |+.+++++|++.  +.+++.+|.+|+||||+|+.+|+.+++++|+
T Consensus        80 g~~~~v~~Ll~~--ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          80 GFLDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccc--ccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            888888888876  5677788888888888888888888888876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=5.2e-20  Score=159.41  Aligned_cols=106  Identities=18%  Similarity=0.199  Sum_probs=88.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC
Q 005931          211 YTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRK  290 (669)
Q Consensus       211 ~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~  290 (669)
                      .|||++|+++|+.++++.|++. +.+++.+|..|+||||+|+.+++.+++++|++.  +.+++.+|.+|+||||+|+..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~--g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS--SCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccc--cceeeecccccccchhhhhhcC
Confidence            4688888888888888877765 467888888888888888888888888888875  6678888888899999999888


Q ss_pred             CHHHHHHHHHhcCcccccccCCCCCHHHHH
Q 005931          291 NYQFVEYIIKETVLDIYCRNHKNQTALDII  320 (669)
Q Consensus       291 ~~~iv~~Ll~~~~~d~~~~n~~g~T~L~~a  320 (669)
                      +.+++++|+ +.|+|++.+|.+|+||||+|
T Consensus        80 ~~~~v~~Ll-~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLL-SKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHH-TTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhh-cccccceeeCCCCCCHHHHH
Confidence            888998888 66788888899999998876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=158.80  Aligned_cols=118  Identities=23%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             HHHHHHhCCHHHHHHHHcCcchhhhcccCCCCChHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHH
Q 005931            9 LSEAIVRNDKQALINLVGCSNKRILLQRDASLNTALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHE   88 (669)
Q Consensus         9 L~~Ai~~gd~~~l~~ll~~~~~~~l~~~d~~g~T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~e   88 (669)
                      |+.|+.+|+.+.++.|++ .+ ..++.+|..|.||||+||..|+.+++++|++.+.+ .+.+|.+|+||||+|+..|+.+
T Consensus         5 L~~A~~~G~~~~v~~Ll~-~g-~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           5 LLDSSLEGEFDLVQRIIY-EV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHTCHHHHHHHTS-TT-SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHH-cC-CCccccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHHH
Confidence            455555555555555554 21 23444555555555555555555555555555544 4445555555555555555555


Q ss_pred             HHHHHHhhCCccccccCCCCCcHHHHH--HHcCCHHHHHHHHc
Q 005931           89 VSAFLMEANPTVATKLNHESQSAFSLA--CRQGHLDVVKLLIN  129 (669)
Q Consensus        89 ivk~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~eiv~~Ll~  129 (669)
                      ++++|+++|+++....+..+.||++++  +..|+.+++++|++
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            555555555554433233344444333  34444555555543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.1e-20  Score=160.86  Aligned_cols=107  Identities=21%  Similarity=0.158  Sum_probs=96.5

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCC
Q 005931          177 FSPLHYASSIGNVNMTKLLLNHNKDLALQYNKDGYTPLHLAAINGRVKILVAFLSSSPASFDRLTTYGETVFHLAVRFDK  256 (669)
Q Consensus       177 ~t~Lh~Aa~~g~~eiv~~Ll~~g~~~~~~~~~~g~tpLh~Aa~~g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av~~~~  256 (669)
                      .|||.+|++.|+.+++++|+++|++++.. +.+|.||||+|+..|+.++++.++.. +.+++.+|..|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCC-SSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccc-cccccccccccccccccccccccccc-cceeeecccccccchhhhhhcCc
Confidence            47999999999999999999999998876 88999999999999999998777765 47899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCccCCCCCCcHHHHHH
Q 005931          257 YNAFKFLAESFNTCLFHGQDQFGNTVLHLAV  287 (669)
Q Consensus       257 ~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~  287 (669)
                      .+++++|++.  +++++.+|.+|+||||+|.
T Consensus        81 ~~~v~~Ll~~--Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSK--GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTT--CCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcc--cccceeeCCCCCCHHHHHh
Confidence            9999999986  6788999999999999983

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.4e-19  Score=157.05  Aligned_cols=122  Identities=20%  Similarity=0.239  Sum_probs=109.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCH
Q 005931           42 TALHLAARFGHVELVTEITKLCPELVAAENEKLETPLHEACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHL  121 (669)
Q Consensus        42 T~Lh~Aa~~g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  121 (669)
                      ++|+.||..|+.++|+.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|++.... |.+|.||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~-d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-ccccccccccccccccccccccccccccccccccccc-cccCcccccccchhhHH
Confidence            689999999999999999999998 7999999999999999999999999999999987654 89999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCCcHHHHH--HHcCCHHHHHHHHhcC
Q 005931          122 DVVKLLINQSWLMEFEEDSVESTPIYLA--ISRGHTDIAREILEVR  165 (669)
Q Consensus       122 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A--~~~g~~~iv~~Ll~~~  165 (669)
                      +++++|++++++.+......+.|+++.+  +..|+.+++++|+...
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999999887755555677887665  5778999999998753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.2e-18  Score=157.82  Aligned_cols=123  Identities=23%  Similarity=0.271  Sum_probs=106.8

Q ss_pred             HHHHHHHhCCHHHHHHHHcCcchh-----hhcccCCCCChHHHHHHHc---CCHHHHHHHHHhCCccccccCCCCCcHHH
Q 005931            8 NLSEAIVRNDKQALINLVGCSNKR-----ILLQRDASLNTALHLAARF---GHVELVTEITKLCPELVAAENEKLETPLH   79 (669)
Q Consensus         8 ~L~~Ai~~gd~~~l~~ll~~~~~~-----~l~~~d~~g~T~Lh~Aa~~---g~~e~vk~Ll~~~~~~~~~~n~~g~TpLh   79 (669)
                      .|++|++.+|+..+..++. ++..     .....+..|+||||+|+..   |+.++|++|++.+++ ++.+|..|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYA-DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHH-cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccc
Confidence            4899999999999999987 3221     2223377899999999984   679999999999998 7899999999999


Q ss_pred             HHHHcCCHHHHHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHHcCCCc
Q 005931           80 EACCQGNHEVSAFLMEANPTVATKLNHESQSAFSLACRQGHLDVVKLLINQSWL  133 (669)
Q Consensus        80 ~Aa~~g~~eivk~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~  133 (669)
                      +||..|+.+++++|+++|+++... |..|.||||+|+..|+.+++++|++.+..
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccCcccccc-CCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999998654 99999999999999999999999986543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=9.7e-17  Score=145.03  Aligned_cols=118  Identities=20%  Similarity=0.199  Sum_probs=72.4

Q ss_pred             HHHHhcCCHHHHHHHHhcCCccccc-----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccccCCCCcHHHHHH
Q 005931          181 HYASSIGNVNMTKLLLNHNKDLALQ-----YNKDGYTPLHLAAIN---GRVKILVAFLSSSPASFDRLTTYGETVFHLAV  252 (669)
Q Consensus       181 h~Aa~~g~~eiv~~Ll~~g~~~~~~-----~~~~g~tpLh~Aa~~---g~~e~v~~LL~~~~~~i~~~d~~g~t~Lh~Av  252 (669)
                      ..|++.+++..+..++..|.++...     .+..|.||||+|+..   |..++++.|+..+ .+++.+|..|+||||+|+
T Consensus        11 ~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          11 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-CChhhhhhhhcccccccc
Confidence            3445566666666666555544322     244566666666653   4556666555543 566666666666666666


Q ss_pred             HcCCHHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005931          253 RFDKYNAFKFLAESFNTCLFHGQDQFGNTVLHLAVLRKNYQFVEYIIKE  301 (669)
Q Consensus       253 ~~~~~~iv~~Ll~~~~~~~in~~D~~G~TpLh~A~~~~~~~iv~~Ll~~  301 (669)
                      +.|+.+++++|++.  +++++.+|.+|.||||+|+..|+.+++++|++.
T Consensus        90 ~~~~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          90 LTDNAECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccc--CccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            66666777766664  555666667777777777777777777766643