Citrus Sinensis ID: 005956

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------
Protein Sequence
MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccccccccccccccccEEcccccccHHHHHHHHHHHcccEEEcccccEEEcccccccccccccccccEEEcccccEEEEEEEccccEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEEEccccccEEEEccccEEEEEEccccEEccccccEEEEEEcccccccccccEEEEcccEEEEEccccccccEEccccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEEcccccEEEEEccccEEEEEcccccEEEEccccccccccccEEEEEcccccEEEEEEccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEEEcccccccccEEEEEEccccccEEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccEEEEEEEccccEEEEEcccccccccEEEEccccccEEcccccccccccccccccEEEEEEccccccEEEEEccccEEEcccccccccccccccccccccEEEccccccEEEEEcccccEEEEEcccccEEEEcccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccEEcccccccccHccccccccccccccEEEEEcccccHHHHHHHHHHHccccEccccccEEEcccccEcccccEEEEcccccccHEEEcccccccEEEEEEcccccEEEEEcccccccEEEEEccccccEEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEccccccccEEEEEccccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccEEEEEEEcccccEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEccccEEEEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccEEcc
Coil and Loop (DISEMBL)
mlssdegvddvffdstdclsfeesvvaeeelgpgkldydiwmseprsVKERRKNFLCKmglvefsskneitfddssqmmgldritecsgavsgssmnradenlncfdremdSEANCMVDELEQDQMNECVVtlegesngfsqsvdkfenpfpeckgvniKKVKKLWKRIISMKKRNVetcmsekrkpnsekpkankMEVKQNKKKCMEFTALYTSQEIQAHkgciwtlkfspdgrylasggedgVVRIWHVTSVAAScksftddggfgsnakegkikfgkkksshvpvvipdevfqieesplqelhghkgdvldlawsnsNYLLSCSMDKTVRMWQVGCnqclnvfdhhnyvtcvqfnpiddnyfisgsidgkVRIWGVCEKRVVDWADVRDVISAIcyipdgkgfiVGSITGTCHFykasgndlklekvdfhdrkktsgnkitgiqfsrdeSQRIMITSEDSKLRILDGVDVihkfkglpksgsqmsasFTTTGKHIISIGDDCRVYVWnydelcfpsskqknsvrsCEHFFSEGVSvavqwpgigteqkslcssslrdcsqkwdnletapwirdserfslgswfsndgpcrgsatwpaeklplwdvtidsdgycqdpqqqRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMiktfhnyglpirl
Flexible Loop (DISEMBL)
mlssdegvddvffdstDCLSFeesvvaeeelgpgkldydiwMSEPRSVKERRKNFLCKMglvefsskneitfddssqmMGLDRITECsgavsgssmnrADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKfenpfpeckgvnikkvkkLWKRIISmkkrnvetcmsekrkpnsekpkankmevkQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAScksftddggfgsnAKEGKikfgkkksshvpvvIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGndlklekvdfhdrkktsgnkitgiqfsrdesqRIMITsedsklrilDGVDVIHKFkglpksgsqmSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Low Complexity Region (SEG)
MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAkegkikfgkkkSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCqdpqqqrlqqqCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Disordered region (IsUnstruct)
*********DVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSE******RRKNFLCKMGLVEFSS***I*********************************************************ECVVTL*************FENPFPECKGVNIKKVKKLWKRIISMK********************************CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF*****************HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF*************************I****SKLRILDGVDVIHKFKGL*********SFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLP***
Disordered Region (DISOPRED)
*********DVFFDSTD******************LDYDIWMSE******RRKNFLCKMGL*******************LDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSV*************N*KKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG*G*****************VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDS*******************VDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Disordered Region (DISEMBL)
********DDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVE**********************QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS*********CEHFFSEGVSVAVQWPGIGTE***********CSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Disordered Region (DISPRO)
**********V*F*STDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	667	2.2.26 [Sep-21-2011]
Q6LA54	933	Uncharacterized WD repeat	yes	no	0.395	0.282	0.360	5e-48
Q498F0	912	WD repeat-containing prot	N/A	no	0.493	0.360	0.329	6e-46
Q9XSC3	912	WD repeat-containing prot	yes	no	0.455	0.333	0.338	8e-46
Q9R037	908	WD repeat-containing prot	yes	no	0.485	0.356	0.323	1e-44
Q5JSH3	913	WD repeat-containing prot	yes	no	0.448	0.327	0.339	1e-44
Q6NVE8	915	WD repeat-containing prot	yes	no	0.448	0.326	0.336	2e-44
O60136	586	Uncharacterized WD repeat	no	no	0.487	0.554	0.268	3e-39
Q03177	834	WD repeat-containing prot	yes	no	0.472	0.377	0.311	3e-39
P32330	852	2-deoxy-glucose resistant	no	no	0.421	0.329	0.272	1e-22
Q498M4	334	WD repeat-containing prot	no	no	0.412	0.823	0.274	2e-20

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2

 Score =  192 bits (489), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 41/305 (13%)

Query: 224 CIWTLKFSPDGRYLASGGEDGVVRIW------HVTSVAA-SCKSFTDDGGFGSNAKEGKI 276
            IW +KFS DGRYLA GG+D ++RIW      H  SVA+ +C S  ++      A     
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSVASETCSSDPNNPKLNLKA----- 372

Query: 277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 336
                     PV          E+P++E  GH  D+LDL+WS +N+LLS SMDKT R+W 
Sbjct: 373 ----------PV--------FSEAPIREYAGHTADILDLSWSRNNFLLSSSMDKTARLWH 414

Query: 337 VGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA 396
                CL  F+H ++VT + F+P DD +F+SGS+D K+R+W + EK V  W ++ ++I+A
Sbjct: 415 PVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFWNELPELITA 474

Query: 397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSRDE--- 452
           + + PDG   I G+  G C FY   G   + +      R K + G+K+TGIQ +R +   
Sbjct: 475 VAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVTGIQ-TRTQMID 533

Query: 453 ----SQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 506
                  +++T+ DS++RI +  D  +  KFKG   + SQ  A F   G ++I   +D +
Sbjct: 534 NIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHANAQSQNRAYFDDDGNYVICGSEDHQ 593

Query: 507 VYVWN 511
           V++W+
Sbjct: 594 VFIWD 598

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1

 Score =  186 bits (471), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 193/367 (52%), Gaps = 38/367 (10%)

Query: 196 KMEVKQNKKKCMEFTALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 254
           K +     K   +F  +   Q++   H G +WT+KFS  GR LAS G+D VVRIW + + 
Sbjct: 486 KFKAAHGFKGPYDFEQIKVVQDLSGEHVGAVWTMKFSHCGRLLASAGQDNVVRIWVLKNA 545

Query: 255 AASCKS----FTDDGGFGSNAKEGKIKFGKKKS-----SHVPVVIPDEV-FQIEESPLQE 304
                +    +  +G    +  +  +   K  +     S    V PD+      + P  +
Sbjct: 546 FDYFNNMRIKYNTEGRVSPSPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFRQVPFCK 605

Query: 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364
             GH  D+LDL+WS + +LLS SMDKTVR+W +   +CL  F H ++VT + F+P DD Y
Sbjct: 606 YKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRY 665

Query: 365 FISGSIDGKVRIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKAS 421
           F+SGS+DGK+R+W + +K+V  W ++     +I+A  +  +GK  ++G+  G C FY   
Sbjct: 666 FLSGSLDGKLRLWNIPDKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDT- 724

Query: 422 GNDLKLEKVDFHDR--------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD- 472
                 E + +H +        +   G KITGI+    E+ +I++TS DS++R+ D  D 
Sbjct: 725 ------EHLKYHTQIHVRSTRGRNRVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDL 777

Query: 473 -VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCE 530
            +  K+KG   S SQ+ ASF+    +I+S  +D  VY+W+ Y +L      +  SVR   
Sbjct: 778 SLSMKYKGCVNSSSQIKASFSHDFTYIVSGSEDKYVYIWSTYHDLS-----KFTSVRRDR 832

Query: 531 HFFSEGV 537
           + F EG+
Sbjct: 833 NDFWEGI 839

Downstream effector for rab11. May be involved in vesicle recycling.

Xenopus laevis (taxid: 8355)

>sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1

 Score =  185 bits (470), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 183/340 (53%), Gaps = 36/340 (10%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS----FTDDGGFGSNAKEGKI 276
           H G +WT+KFS  GR LAS G+D VVRIW + +      +    +  +G    +  +  +
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSPSQESL 568

Query: 277 KFGKKKSSHVPVVIPDEVFQIEESPLQE-----LHGHKGDVLDLAWSNSNYLLSCSMDKT 331
              K  +        DE    + +P ++       GH  D+LDL+WS + +LLS SMDKT
Sbjct: 569 NSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKT 628

Query: 332 VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV- 390
           VR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  W +V 
Sbjct: 629 VRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVD 688

Query: 391 --RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR--------KKTSG 440
               +I+A  +  +GK  ++G+  G C FY         E + +H +        +   G
Sbjct: 689 GQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRGRNKVG 741

Query: 441 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHI 498
            KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+    ++
Sbjct: 742 RKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFNYL 800

Query: 499 ISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 537
           +S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 801 VSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 835

Downstream effector for RAB11. May be involved in vesicle recycling.

Bos taurus (taxid: 9913)

>sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1

 Score =  181 bits (460), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 192/371 (51%), Gaps = 47/371 (12%)

Query: 196 KMEVKQNKKKCMEFTALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 254
           K +     K   +F  +   Q++   H G +WT+KFS  GR LAS G+D +VRIW + + 
Sbjct: 479 KFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNA 538

Query: 255 AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-------------PDEV-FQIEES 300
                 + ++     N  EG++     + S                   PD+      + 
Sbjct: 539 F----DYFNNMRMKYNT-EGRVSPSPSQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQR 593

Query: 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI 360
           P  +  GH  D+LDL+WS + +LLS SMDKTVR+W +   +CL  F H ++VT + F+P 
Sbjct: 594 PFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPR 653

Query: 361 DDNYFISGSIDGKVRIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHF 417
           DD YF+SGS+DGK+R+W + +K+V  W +V     +I+A  +  +GK  ++G+  G C F
Sbjct: 654 DDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIF 713

Query: 418 YKASGNDLKLEKVDFHDR--------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469
           Y         E + +H +        +   G KITGI+    E+ +I++TS DS++R+ D
Sbjct: 714 YDT-------EHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGEN-KILVTSNDSRIRLYD 765

Query: 470 GVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSV 526
             D  +  K+KG   S SQ+ ASF+    +++S  +D  VY+W+ Y +L      +  SV
Sbjct: 766 LRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTYHDLS-----KFTSV 820

Query: 527 RSCEHFFSEGV 537
           R   + F EG+
Sbjct: 821 RRDRNDFWEGI 831

Downstream effector for RAB11. May be involved in vesicle recycling.

Rattus norvegicus (taxid: 10116)

>sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1

 Score =  181 bits (460), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 183/345 (53%), Gaps = 46/345 (13%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 280
           H G +WT+KFS  GR LAS G+D VVRIW + +       + ++     N  EG++    
Sbjct: 510 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 564

Query: 281 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 326
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 565 SQESLSSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 624

Query: 327 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 625 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 684

Query: 387 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 435
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 685 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 737

Query: 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT 493
           +   G KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+ 
Sbjct: 738 RNKVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSH 796

Query: 494 TGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 537
              +++S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 797 DFTYLVSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 836

Downstream effector for RAB11. May be involved in vesicle recycling.

Homo sapiens (taxid: 9606)

>sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1

 Score =  181 bits (459), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 183/345 (53%), Gaps = 46/345 (13%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 280
           H G +WT+KFS  GR LAS G+D +VRIW + +       + ++     N  EG++    
Sbjct: 512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 566

Query: 281 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 326
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 567 SQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 626

Query: 327 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 627 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 686

Query: 387 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 435
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 687 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 739

Query: 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT 493
           +   G KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+ 
Sbjct: 740 RNKVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSH 798

Query: 494 TGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 537
              +++S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 799 DFTYLVSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 838

Downstream effector for RAB11. May be involved in vesicle recycling.

Mus musculus (taxid: 10090)

>sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1

 Score =  164 bits (414), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 167/357 (46%), Gaps = 32/357 (8%)

Query: 184 KRKPNSEKPKANKMEVKQ------NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYL 237
           KR P  E     K+ V Q        K    F       E    K  +W  + S  G+YL
Sbjct: 142 KRMPKKEITLNQKLYVSQVIGPADAPKSKTIFGKRIMQWEPSQFKESVWASEISKSGKYL 201

Query: 238 ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297
           A+ G+D ++R+W V       ++           KEG    G+          P  +F+ 
Sbjct: 202 ATAGKDAIIRVWKVIETPERRETL---------LKEGPQSCGR-------FFTPSSIFEP 245

Query: 298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 357
           E  P+ E  GH  +VL ++WS +++LL+ S D+TVR+W     + L VF H+  VTCV F
Sbjct: 246 E--PVLECVGHNAEVLSISWSKNDFLLTSSADRTVRLWHPKSTKSLAVFRHNEIVTCVAF 303

Query: 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 417
           +PIDD YF+SGS+D K+++W +   +++ W ++  V+S IC+ PDG+  +VG   G C  
Sbjct: 304 HPIDDRYFVSGSLDCKIQLWSILRHKILHWTELEYVVSTICFYPDGESIVVGMFYGLCAI 363

Query: 418 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFS------RDESQRIMITSEDSKLRILDGV 471
           Y+          +  H   +    ++TG+Q +            +++++ D+ +R+ + V
Sbjct: 364 YETKNLQYVSSWLIHHSPSRNKKCRVTGLQCASIIPNDSKSDNVVLVSTNDNAIRLYNTV 423

Query: 472 D--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 526
              ++ K     +   ++ +  +    +IIS  D   V +W+       ++ +K SV
Sbjct: 424 THALVLKLSDAHRVNGRVLSRLSEDNSYIISGSDTNEVVLWHIPNKVLINASRKRSV 480

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1

 Score =  163 bits (413), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 184/379 (48%), Gaps = 64/379 (16%)

Query: 191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKG---------------CIWTLKFSPDGR 235
           +PK  KM   + +K   +F  L+ +QE+ A++G                IW+ KFS DG+
Sbjct: 129 EPKYIKM--LKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGK 186

Query: 236 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE-- 293
           ++A+G +DG +RIW V  + +  +    D    SN KE + K  + K     +  P E  
Sbjct: 187 FMATGSKDGKIRIWKV--IGSPVERAELDSSAESN-KEARAKSMRIKQQVSSLNNPKEKQ 243

Query: 294 -----VFQIEE--------------SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRM 334
                  + EE              +PL+    H  DVLD+ WS +N++LS SMDKTV++
Sbjct: 244 FLDSATEKYEEKEKLLNLYAPVFHPTPLRLYKEHVQDVLDINWSKNNFILSASMDKTVKL 303

Query: 335 WQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI 394
           W       L  F H ++VTCV+F+P DD +FISG +D K R+W + +  V    D +D+I
Sbjct: 304 WHPDRKNSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDLI 363

Query: 395 SAICYIP-DGKGFIVGSITGTCHFYKASG---------NDLKLEKVDFH------DRKKT 438
           +++   P +GK  I+G+  G  H     G          D + ++ + H      D K  
Sbjct: 364 TSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVMVTETDSKIR 423

Query: 439 SGNKITGIQFSR---DESQRIMITSEDSKLRILD--GVDVIHKFKGLPKSGSQMSASFTT 493
            G ++TG+Q  R   D S R+++TS DS++RI D     ++   KG     SQ  A  + 
Sbjct: 424 HGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHSGSSQHKAQLSI 483

Query: 494 -TGKHI-ISIGDDCRVYVW 510
             G+ I ++  DD  VY W
Sbjct: 484 WHGQPIVVNSSDDHWVYGW 502

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 150/341 (43%), Gaps = 60/341 (17%)

Query: 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT--------------SVAAS---------- 257
           K  I    FS DG+Y+  G +DG + +W V               SV+AS          
Sbjct: 173 KNSICCCTFSHDGKYMVIGCKDGSLHLWKVINSPVKRSEMGRSEKSVSASRANSLKIQRH 232

Query: 258 -CKSFTDDGGFGSNAKEGKIKF-GKKKSSHV--PVVIPDEVFQIEESPLQELHGHKGDVL 313
                + +G   SN  +   +F G  K  H+  PV   D VF++          H  D+L
Sbjct: 233 LASISSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSD-VFRV-------FMEHALDIL 284

Query: 314 DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373
           D  WS + +L++ SMDKT ++W       L  F H ++VT   F P DD + I+G +D +
Sbjct: 285 DANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFIITGCLDHR 344

Query: 374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCH------------FYKA 420
            R+W + +  V    D +D+I+++   P G  + I+G+  G  +            F+ +
Sbjct: 345 CRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNGYIYVLLTHGLKFVSSFHVS 404

Query: 421 SGNDLKLEKVDFHDR----KKTSGNKITGIQ--FSR-DESQRIMITSEDSKLRILDGVD- 472
             +     K  FH      K   G +ITG+Q  FS+ D++ R+++T+ DSK++I D  + 
Sbjct: 405 DKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSKIQIFDLNEK 464

Query: 473 -VIHKFKGLPKSGSQMSASFTTTGKH--IISIGDDCRVYVW 510
             +  FKG     S+    F        + +  DD   Y W
Sbjct: 465 KPLELFKGFQSGSSRHRGQFLMMKNEPVVFTGSDDHWFYTW 505

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 150/346 (43%), Gaps = 71/346 (20%)

Query: 173 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 232
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 6   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 55

Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292
           +G +LAS   D +++IW                     A +GK +               
Sbjct: 56  NGEWLASSSADKLIKIW--------------------GAYDGKFE--------------- 80

Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 350
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 81  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130

Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 409
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 131 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189

Query: 410 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468
           S  G C  +  ASG  LK    D           ++ ++FS +  + I+  + D+ L++ 
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 241

Query: 469 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 511
           D      +  + G       + A+F+ T GK I+S  +D  VY+WN
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	667
225431541	674	PREDICTED: WD repeat-containing protein	0.988	0.977	0.639	0.0
296088582	668	unnamed protein product [Vitis vinifera]	0.965	0.964	0.628	0.0
255552366	654	WD-repeat protein, putative [Ricinus com	0.964	0.983	0.576	0.0
224131190	655	predicted protein [Populus trichocarpa]	0.962	0.980	0.568	0.0
449461887	668	PREDICTED: uncharacterized protein LOC10	0.967	0.965	0.531	0.0
356511161	675	PREDICTED: WD repeat-containing protein	0.983	0.971	0.521	0.0
356518745	665	PREDICTED: uncharacterized protein LOC10	0.973	0.975	0.516	1e-174
356507482	668	PREDICTED: uncharacterized protein LOC10	0.976	0.974	0.501	1e-172
224093348	550	predicted protein [Populus trichocarpa]	0.737	0.894	0.568	1e-170
356528542	617	PREDICTED: uncharacterized protein LOC10	0.784	0.847	0.544	1e-164

>gi|225431541|ref|XP_002275497.1| PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/682 (63%), Positives = 506/682 (74%), Gaps = 23/682 (3%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           ML SDEG DDVFFDS D LS EESV A+EELG GKLDY+IW +EPRSV+ERR++FL  MG
Sbjct: 1   MLRSDEGEDDVFFDSMDHLSCEESVRAKEELGCGKLDYEIWRNEPRSVRERRESFLRGMG 60

Query: 61  LVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSS---MNRADENLNCFDREMDSEANCM 117
            VEF  +++  F D  +M+ L RITECSGAVS SS   +N  +EN  C  RE D  ANCM
Sbjct: 61  FVEFVPEHDKPFGDPPEMVELGRITECSGAVSSSSVSSINCTEENSVCSGREGDVGANCM 120

Query: 118 VDELEQDQMNECVVTLEGESNGFSQSVDKFE-----NPFPECKGVNI-KKVKKLWKRIIS 171
           VD L Q Q  +  +  EGE+ G   S  +FE          CK + + KK +  WKR IS
Sbjct: 121 VDALNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQACVEGCKNLGMDKKTRSWWKRFIS 180

Query: 172 MKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFS 231
            +K       S+  K  SE PK N+M+V+QNKK+CMEFTAL   QEIQAHKG IWT+KFS
Sbjct: 181 KRKGRDAASASQVSKQTSETPKINQMKVRQNKKRCMEFTALCIGQEIQAHKGFIWTMKFS 240

Query: 232 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291
           PDG+YLASGGEDGVVRIW VTS  ASCK  T +G FG   K+GK  FG+KK S+ PVVIP
Sbjct: 241 PDGQYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGCEVKDGKSSFGRKKPSYAPVVIP 300

Query: 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
           D++FQIEESPLQE HGH  DVLDLAWS SN LLS SMDKTVR+WQVG ++CLNVF H+NY
Sbjct: 301 DKIFQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMDKTVRLWQVGHDECLNVFRHNNY 360

Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
           VTC+QFNP+DDNYFISGSIDGKVRIWGV E+RVVDWADVRDVI+AICY PDGKGFIVGS+
Sbjct: 361 VTCIQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWADVRDVITAICYQPDGKGFIVGSV 420

Query: 412 TGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470
           TGTC FY ASGN L+L+ KV+FH RKKTSGNKITGIQFS++ESQ++MITSEDSKLRILDG
Sbjct: 421 TGTCCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQFSQEESQKVMITSEDSKLRILDG 480

Query: 471 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 530
           +DV++K+KGL KSGSQMSASFT+TG+HI+S+G+D RVYVWNYD  C  SSKQ  SV+SCE
Sbjct: 481 IDVVYKYKGLRKSGSQMSASFTSTGRHIVSVGEDSRVYVWNYDGFCSQSSKQMKSVQSCE 540

Query: 531 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG 590
           HFF EGVSVA+ W   G E+K L S SLR      D+LE   WIRDSERFSLG+WFS DG
Sbjct: 541 HFFFEGVSVAIPWSDTGAEKKGLGSDSLRQSPPTQDHLEATSWIRDSERFSLGNWFSMDG 600

Query: 591 PCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR-----AISATWGLV 645
            CRG ATWP EKLPLW           +        Q     +DV+     A+S  WGLV
Sbjct: 601 SCRGGATWPEEKLPLWGAP--------EHDHHHHDHQQQQQHNDVQNHNHLALSEAWGLV 652

Query: 646 IVTAGCDGMIKTFHNYGLPIRL 667
           I TAG DG I+TFHNYGLP+RL
Sbjct: 653 IATAGWDGTIRTFHNYGLPVRL 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088582|emb|CBI37573.3| unnamed protein product [Vitis vinifera]

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/679 (62%), Positives = 496/679 (73%), Gaps = 35/679 (5%)

Query: 4   SDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVE 63
           SDEG DDVFFDS D LS EESV A+EELG GKLDY+IW +EPRSV+ERR++FL  MG VE
Sbjct: 10  SDEGEDDVFFDSMDHLSCEESVRAKEELGCGKLDYEIWRNEPRSVRERRESFLRGMGFVE 69

Query: 64  FSSKNEITFDDSSQMMGLDRITECSGAVSGSS---MNRADENLNCFDREMDSEANCMVDE 120
           F  +++  F D  +M+ L RITECSGAVS SS   +N  +EN  C  RE D  ANCMVD 
Sbjct: 70  FVPEHDKPFGDPPEMVELGRITECSGAVSSSSVSSINCTEENSVCSGREGDVGANCMVDA 129

Query: 121 LEQDQMNECVVTLEGESNGFSQSVDKFE-----NPFPECKGVNI-KKVKKLWKRIISMKK 174
           L Q Q  +  +  EGE+ G   S  +FE          CK + + KK +  WKR IS +K
Sbjct: 130 LNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQACVEGCKNLGMDKKTRSWWKRFISKRK 189

Query: 175 RNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG 234
                  S+  K  SE PK N+M+V+QNKK+CMEFTAL   QEIQAHKG IWT+KFSPDG
Sbjct: 190 GRDAASASQVSKQTSETPKINQMKVRQNKKRCMEFTALCIGQEIQAHKGFIWTMKFSPDG 249

Query: 235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294
           +YLASGGEDGVVRIW VTS  ASCK  T +G FG             + S+ PVVIPD++
Sbjct: 250 QYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGC------------EPSYAPVVIPDKI 297

Query: 295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC 354
           FQIEESPLQE HGH  DVLDLAWS SN LLS SMDKTVR+WQVG ++CLNVF H+NYVTC
Sbjct: 298 FQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMDKTVRLWQVGHDECLNVFRHNNYVTC 357

Query: 355 VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT 414
           +QFNP+DDNYFISGSIDGKVRIWGV E+RVVDWADVRDVI+AICY PDGKGFIVGS+TGT
Sbjct: 358 IQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWADVRDVITAICYQPDGKGFIVGSVTGT 417

Query: 415 CHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 473
           C FY ASGN L+L+ KV+FH RKKTSGNKITGIQFS++ESQ++MITSEDSKLRILDG+DV
Sbjct: 418 CCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQFSQEESQKVMITSEDSKLRILDGIDV 477

Query: 474 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 533
           ++K+KGL KSGSQMSASFT+TG+HI+S+G+D RVYVWNYD  C  SSKQ  SV+SCEHFF
Sbjct: 478 VYKYKGLRKSGSQMSASFTSTGRHIVSVGEDSRVYVWNYDGFCSQSSKQMKSVQSCEHFF 537

Query: 534 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCR 593
            EGVSVA+ W   G E+K L S SLR      D+LE   WIRDSERFSLG+WFS DG CR
Sbjct: 538 FEGVSVAIPWSDTGAEKKGLGSDSLRQSPPTQDHLEATSWIRDSERFSLGNWFSMDGSCR 597

Query: 594 GSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR-----AISATWGLVIVT 648
           G ATWP EKLPLW           +        Q     +DV+     A+S  WGLVI T
Sbjct: 598 GGATWPEEKLPLWGAP--------EHDHHHHDHQQQQQHNDVQNHNHLALSEAWGLVIAT 649

Query: 649 AGCDGMIKTFHNYGLPIRL 667
           AG DG I+TFHNYGLP+RL
Sbjct: 650 AGWDGTIRTFHNYGLPVRL 668

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552366|ref|XP_002517227.1| WD-repeat protein, putative [Ricinus communis] gi|223543598|gb|EEF45127.1| WD-repeat protein, putative [Ricinus communis]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/678 (57%), Positives = 499/678 (73%), Gaps = 35/678 (5%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           ML+ DEG DD+FFDS DCLS EES+V +E        Y+IW++EP+SVKERR++FLC+MG
Sbjct: 1   MLNFDEGEDDLFFDSVDCLSPEESIVNKE--------YEIWLNEPQSVKERRQSFLCEMG 52

Query: 61  LVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRA----DENLNCFDREMDSEANC 116
           L E + K++      ++++GL RI+E SGAVS SS  R     + NL+C  RE +SEANC
Sbjct: 53  LTELACKSD------NEIIGLQRISEFSGAVSSSSSLRTYGEEEGNLDCCGRESNSEANC 106

Query: 117 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPE---CKGVNIKKVKKLWKRIISMK 173
           M+D+++Q Q+++ +V  E E++    SV + ++   E         +K+K  WK  +  +
Sbjct: 107 MIDDMKQYQLDKPIVGCENENSESLTSVSECDHSDSEQYRSYDAGKQKMKSWWKFFVQKR 166

Query: 174 KRNVETCMSEKRKPNSEKP--KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFS 231
           K+   TC+S+  + NS+ P  + N+++VKQNKK+CMEFT +Y  QE++AHKG IWT+KFS
Sbjct: 167 KQKECTCVSKISELNSDTPTIETNRIKVKQNKKRCMEFTGVYMQQELRAHKGFIWTMKFS 226

Query: 232 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291
           PDG+YLA+GGEDG+VRIW VTSV    KSF  +  F  + KEGK    K+K SH  VVIP
Sbjct: 227 PDGQYLATGGEDGIVRIWQVTSVNGCQKSFASEDSF--DMKEGK---SKRKMSHASVVIP 281

Query: 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
           + +FQ+EESP+ E +GH  DVLDLAWSNSN LLS S DKTVR+WQVG + CLN+F H +Y
Sbjct: 282 ERIFQLEESPVHEFYGHSSDVLDLAWSNSNCLLSSSKDKTVRLWQVGSDHCLNIFHHISY 341

Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
           VTC+QFNP+++NYFISGSIDGKVRIWGVCE+RVVDW D  DV SAICY PDGKGF+VGSI
Sbjct: 342 VTCIQFNPVNENYFISGSIDGKVRIWGVCEQRVVDWVDAHDVTSAICYQPDGKGFVVGSI 401

Query: 412 TGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470
           TGTC FY+ASGNDL+L  ++    RK+T+GN+ITGIQFS++  QR+MI+SEDSKLRILDG
Sbjct: 402 TGTCRFYEASGNDLQLGAEIHVQGRKRTAGNRITGIQFSQERPQRVMISSEDSKLRILDG 461

Query: 471 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 530
           VD++HK+KGLPKSGSQMSASFT+ GKHIIS+G+DCRVYVW+YDELC PSSK K SVRSCE
Sbjct: 462 VDIVHKYKGLPKSGSQMSASFTSGGKHIISVGEDCRVYVWDYDELCTPSSKHKKSVRSCE 521

Query: 531 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG 590
           HFFSEGVS+AV W G+  E K + S S+     +  + E     RDSERFSLG+WF  DG
Sbjct: 522 HFFSEGVSIAVPWSGMRKELKDVDSGSIHS---RMPSEEGTSRRRDSERFSLGNWFFIDG 578

Query: 591 PCRG-SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTA 649
           PCRG SATWP EKLP WD+ + ++  CQ    +  QQQ +        +   WGLVI TA
Sbjct: 579 PCRGSSATWPEEKLPHWDIAM-AEEECQHQHYENFQQQLIKTHGHT-TLPNAWGLVIATA 636

Query: 650 GCDGMIKTFHNYGLPIRL 667
           G DG I+TFHNYGLP+RL
Sbjct: 637 GWDGTIRTFHNYGLPVRL 654

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131190|ref|XP_002328477.1| predicted protein [Populus trichocarpa] gi|222838192|gb|EEE76557.1| predicted protein [Populus trichocarpa]

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/679 (56%), Positives = 480/679 (70%), Gaps = 37/679 (5%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           MLSSDEG  D+F+DS D            +LG  +L+YDIW++EP+SV+ERR+ FL  MG
Sbjct: 1   MLSSDEGKRDLFYDSVDYF----------DLGCDQLEYDIWLTEPQSVEERRQGFLRGMG 50

Query: 61  LVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSMNRAD-ENLNCFD----REMDSEAN 115
           L  F+ K         +  GL+RITECSGAVS SS+   + E +N       RE +SEAN
Sbjct: 51  LDGFAFKRH-------ENTGLERITECSGAVSSSSVPCTNVEEVNVVSCSAGREENSEAN 103

Query: 116 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPE-CKGVNIKK--VKKLWKRIISM 172
           C++D++ +D+M++  V  E E+ G    +   E    E CK  +  K  +K  WK  +  
Sbjct: 104 CVIDQMSKDKMDKSDVASENENIGPLLDLQGCEQCEEEKCKKCDSGKSIMKSWWKHFLKK 163

Query: 173 -KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFS 231
            K+  V  C+S   K ++E PK N+ +VKQNKK CMEFT +Y  QEIQAHKG IWT+KFS
Sbjct: 164 SKEERVGRCVSGVSKLDTEAPKTNRTKVKQNKKGCMEFTGVYMRQEIQAHKGFIWTMKFS 223

Query: 232 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK-FGKKKSSHVPVVI 290
           PDG+YLA+GGED ++R+W VT V +SCKSF  +G   SN KE K      KK  +  VVI
Sbjct: 224 PDGQYLATGGEDRIIRVWRVTLVDSSCKSFPSEGHCDSNLKEAKSNNLSTKKRMYSSVVI 283

Query: 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 350
           P++VFQIEE+PLQE HGH  ++LDLAWS+SN+LLS SMDKTVR+W++GCN  LN+F H N
Sbjct: 284 PEKVFQIEETPLQEFHGHASEILDLAWSDSNHLLSSSMDKTVRLWRLGCNHSLNIFRHSN 343

Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410
           YVTC+QFNP+D NYFISGSIDGKVRIWGV EKRVV W DVRDVISAI Y PDG+GF+VG+
Sbjct: 344 YVTCIQFNPVDKNYFISGSIDGKVRIWGVSEKRVVHWTDVRDVISAISYQPDGRGFVVGT 403

Query: 411 ITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469
           I GTC FY+ SG DL+LE +V    R++TSGN+IT IQFS++   R+MITSEDSK+R+ D
Sbjct: 404 IKGTCRFYEVSGTDLQLEAEVHIQGRRRTSGNRITSIQFSQEICPRVMITSEDSKVRVFD 463

Query: 470 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 529
           GVD+++KFKGLPKSGSQMSASFT+ G+HIIS+G+DCRVYVWNYD LC   SK   SV+SC
Sbjct: 464 GVDIVNKFKGLPKSGSQMSASFTSNGRHIISVGEDCRVYVWNYDGLCTSWSKHIKSVKSC 523

Query: 530 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSND 589
           E FFSEGVSVAV W G GTE + L   S R  ++     ETA W +DSERFSLGSWF  D
Sbjct: 524 EFFFSEGVSVAVPWSGTGTEVRGL--GSRRSLTE-----ETASWRKDSERFSLGSWFFMD 576

Query: 590 GPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVT 648
           G CRGS ATWP EKLP+WDV +    Y     +   QQQC+N+ D + ++S  WGLVIVT
Sbjct: 577 GRCRGSYATWPEEKLPMWDVPVLDAEYQNQQIKSLHQQQCVNSNDHI-SLSEAWGLVIVT 635

Query: 649 AGCDGMIKTFHNYGLPIRL 667
           AG DG I+ FHNYGLPI L
Sbjct: 636 AGWDGKIRAFHNYGLPIML 654

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461887|ref|XP_004148673.1| PREDICTED: uncharacterized protein LOC101207772 [Cucumis sativus] gi|449507515|ref|XP_004163054.1| PREDICTED: uncharacterized LOC101207772 [Cucumis sativus]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/690 (53%), Positives = 462/690 (66%), Gaps = 45/690 (6%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           MLSSD G  DVFFDS D L  EES+VAEE     KL Y+IWMSEP+S+K+RR+ FL ++G
Sbjct: 1   MLSSD-GDADVFFDSEDYLPLEESLVAEE-ADFSKLGYEIWMSEPQSIKKRRERFLQEVG 58

Query: 61  LVEFSSKNEITFDDSSQM------MGLDRITECSGAVSGSSMNRADENLNCFDREMDSEA 114
            V+F+S +    D   +       M L+R+TECSGAVS S                D   
Sbjct: 59  FVDFASSSTCAQDSEIESSCSSERMELERLTECSGAVSSS----------------DYTP 102

Query: 115 NCMVDELE----QDQMNECVVTLEGESNGFSQSVDKFENPFPE-----CKGVNIKKVKKL 165
           +C V+E +     ++M       E  S   S S   F  P  E     C+  ++ K K L
Sbjct: 103 SCNVEENDLVVCHNEMQSAEFDNEATSRLSSVSDSSFRRPQGEANVEACQDADVGKRKIL 162

Query: 166 --WKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKG 223
             WK   +   R      S + + NS K ++ +M+V Q+KK+C EF+ALY  Q+I AHKG
Sbjct: 163 TWWKSFKNKAARRRSADFSRESELNSPKSQSCRMKVYQHKKRCSEFSALYMRQQICAHKG 222

Query: 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS 283
            IWT+KFSPDG+YLASGGEDGVVRIW VT   AS +   DDG + +  KEGK  F  K  
Sbjct: 223 LIWTMKFSPDGKYLASGGEDGVVRIWRVTYANASSEFLADDGNYNTKPKEGKSSFSSKPL 282

Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 343
               VVIP++VFQI+E P+QELHGH  D+LD+AWS SN LLS S DKTVR+WQV  +QCL
Sbjct: 283 RFATVVIPEKVFQIDELPIQELHGHSSDILDIAWSTSNCLLSSSKDKTVRLWQVSSDQCL 342

Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG 403
           NVF H NYVTCVQFNP+D+N+F+SGSIDGK+RIWGV ++RVVDWAD+RDVI+A+ Y PDG
Sbjct: 343 NVFHHKNYVTCVQFNPMDENFFVSGSIDGKIRIWGVKKQRVVDWADIRDVITAVSYRPDG 402

Query: 404 KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462
           KGF VGSITGTC FY+ SG+ L L  +++   RKK SG +ITGIQF R+ SQR+MITSED
Sbjct: 403 KGFAVGSITGTCRFYETSGDYLHLSAQINVQGRKKASGKRITGIQFFRENSQRVMITSED 462

Query: 463 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 522
           SK+RI +G ++IHK+KGLPKSGSQMSASFT  GKHI+S+G+D RVY+WNYD L  PSSK+
Sbjct: 463 SKVRIFEGTEIIHKYKGLPKSGSQMSASFTKNGKHIVSVGEDSRVYMWNYDSLFLPSSKE 522

Query: 523 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSL 582
             S +SCEHFFS+GVSVA+ W G+GTE     ++     ++K +    A W R+++RFSL
Sbjct: 523 AKSQQSCEHFFSDGVSVAIPWSGVGTEPNCFSNNQALFSNRK-NYQRAASWTRETDRFSL 581

Query: 583 GSWFSNDGPCRGSATWPAEKLPLWDVTI--DSDGYCQDPQQQRLQQQCLNNVDDVRAISA 640
            +WFS DG  RGSATWP E+LPLWD+ I  D +G     Q     Q+ LN+  D     +
Sbjct: 582 SNWFSADGLFRGSATWPEERLPLWDLPITEDENGSL---QHHDCHQKKLNSHRDAHNDGS 638

Query: 641 ---TWGLVIVTAGCDGMIKTFHNYGLPIRL 667
              TWGLV+V AG DG IKTFHNYGLPI+L
Sbjct: 639 QLETWGLVMVVAGLDGTIKTFHNYGLPIKL 668

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511161|ref|XP_003524298.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/686 (52%), Positives = 469/686 (68%), Gaps = 30/686 (4%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYD-IWMSEPRSVKERRKNFLCKM 59
           MLSSD+G  DVFFDS D LS ++SV+A+EE G G+  YD IW+ EP SVKERR+ FL  +
Sbjct: 1   MLSSDDGDMDVFFDSVDSLSTQDSVLAKEEFGSGRCGYDEIWVKEPVSVKERRERFLQGL 60

Query: 60  GLVEFSSK----NEITFDDSSQMMGLDRITECSGAVSGSSMNRAD----ENLNCFDREMD 111
           GL + SSK     ++  DDSS  +GL+RI ECSGA+S + +   D    E L     +  
Sbjct: 61  GLADSSSKVCSQEKMNLDDSSISLGLERIRECSGAISNACILHTDQVVSEKLILSGGKAA 120

Query: 112 SEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKF-------ENPFPECKGVNIKKVKK 164
           S+    +DE +    +E    ++G+ + FS + ++        +  F +   ++ +K K 
Sbjct: 121 SKEKISLDEFKGCPQDEAEANIQGKEHEFSSTAEEHRPREAVSQEEFQDFD-MSKRKRKN 179

Query: 165 LWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGC 224
            WKR ++++K       S   K N+   K  +++V+QNKK+ +EF+ LY  QE++AHKG 
Sbjct: 180 WWKRFVNIRKSGEGNVRS---KLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGL 236

Query: 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284
           +WT+KFSP G+YLASGGEDGVVRIW VTS+  S   FT +     +  E      +KK S
Sbjct: 237 VWTMKFSPCGQYLASGGEDGVVRIWCVTSLDKSSICFTPEDSTSKSKVECDNSSPRKKHS 296

Query: 285 HVPVV-IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 343
             P + +P+ VFQIEESPLQE  GH  DVLDLAWSNS+ LLS SMDKTVR+WQ+GCNQCL
Sbjct: 297 SQPFIFLPNSVFQIEESPLQEFFGHSNDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCL 356

Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG 403
           NVF H++YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RV+DWAD+RD ISAI Y  DG
Sbjct: 357 NVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDAISAISYQQDG 416

Query: 404 KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462
           KGF+VGS+TGTC FY ASG   +LE ++D H +KK SGNKITGIQFS+  SQRIMITSED
Sbjct: 417 KGFVVGSVTGTCCFYVASGTYFQLEAQIDVHGKKKASGNKITGIQFSQKNSQRIMITSED 476

Query: 463 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 522
           SK+ + DG++++ K++GLPKSG QMS+SFT++GKHIIS+G+D  VY+WN+D++   SSKQ
Sbjct: 477 SKICVFDGIELVQKYRGLPKSGCQMSSSFTSSGKHIISVGEDSHVYIWNFDDMGNASSKQ 536

Query: 523 KNSVRSCEHFFSEGVSVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNLETAPWIRDSERFS 581
             S RSCE+FFS+GV+VA+   G+  +++ S  + S          LE A   RD +RFS
Sbjct: 537 TKSERSCEYFFSKGVTVAIPRSGMKADKRDSSGNYSHHSSEMPTQQLEVASEARDHKRFS 596

Query: 582 LGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISAT 641
           LG+WF+ DG CRGS TWP EKLP WD+ I  D Y         QQ C  +    R +S T
Sbjct: 597 LGNWFAIDGTCRGSMTWPEEKLPSWDLPITEDEYGH-------QQLCYKDNCHGRNVSET 649

Query: 642 WGLVIVTAGCDGMIKTFHNYGLPIRL 667
           WGL IV AGCDG IKTFHN+GLP+RL
Sbjct: 650 WGLSIVAAGCDGTIKTFHNFGLPVRL 675

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518745|ref|XP_003528038.1| PREDICTED: uncharacterized protein LOC100801576 [Glycine max]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 353/683 (51%), Positives = 452/683 (66%), Gaps = 34/683 (4%)

Query: 1   MLSSDEGVDDVFFDSTDCLS-FEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKM 59
           ML SDEG  DVFFDS DC S   +SV+ E+E G     Y+IW++EP SV ERR+ FL +M
Sbjct: 1   MLISDEGDSDVFFDSVDCFSPTRDSVLTEQEFG-----YEIWVNEPVSVMERREKFLQEM 55

Query: 60  GLVEFSSK------NEITFDDSSQMMGLDRITECSGAVSGSSMN--RADEN----LNCFD 107
           GL + SSK      N ++ DDSS+ +GL+RI + SGAVS +S +    D++    L    
Sbjct: 56  GLGDGSSKVCSQENNVMSSDDSSERLGLERIRD-SGAVSNASCSCILPDDDQVSELVLSG 114

Query: 108 REMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPEC--KGVNIKKVKKL 165
            E  SEA  + DE +    +E     EG+    S +  +  +   E   K +  K+ K  
Sbjct: 115 SEATSEAQGLFDEHKGCPKDESC--FEGKVYEVSCTDQEVRHRKAEVREKYMGEKEKKNW 172

Query: 166 WKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCI 225
           WK  IS KK       S   K NS   K  ++ V+QNKK+ ME +ALY  QEI+AHKG I
Sbjct: 173 WKHFISSKKGGGGKVRS---KLNSSTNKTRRINVRQNKKRWMELSALYIGQEIRAHKGLI 229

Query: 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285
           WT+KFSP+G+YLASGGEDGV+RIW V ++  S   F  +    +  K       KK SS 
Sbjct: 230 WTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICFNAEDSAANKVKHDFSSSQKKHSSQ 289

Query: 286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV 345
             VV+P ++F+IEESPL E  GH  DVLDLAWSNS+ LLS S DKTVR+W++GC+QCL+V
Sbjct: 290 SFVVLPSKIFKIEESPLHEFSGHASDVLDLAWSNSDTLLSSSSDKTVRLWKIGCSQCLSV 349

Query: 346 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405
           F H +YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RVVDWAD+RDVISAI Y PDGKG
Sbjct: 350 FHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDGKG 409

Query: 406 FIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 464
           F+VGS+ GTC FY ASG   +LE K+  + +K TSGNKITGIQFS+   QR+MITSEDS+
Sbjct: 410 FVVGSLPGTCRFYVASGKHFQLETKIHVNGKKSTSGNKITGIQFSQKNHQRVMITSEDSR 469

Query: 465 LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 524
           +RIL+G + +  +KGLP+SGSQMS SFT+ G+HI+S+G D RVY+WN+++L   SSKQ  
Sbjct: 470 VRILEGTEFVQTYKGLPRSGSQMSGSFTSGGEHIVSVGGDSRVYIWNFNDLGNASSKQTK 529

Query: 525 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS 584
           S  SCEHF SEGV+VA+ W  +  E++S  S+     S     LE +  +R+SERFS GS
Sbjct: 530 SKYSCEHFGSEGVTVALPWSCMSAEEQSGSSNDFAHHSSSQHQLEASHGVRESERFSFGS 589

Query: 585 WFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGL 644
           WFS DG CRGS TWP E LP WD+ +    +         Q+ C  +    + +S TWGL
Sbjct: 590 WFSIDGSCRGSVTWPEETLPRWDLPLVEVEFDH-------QKLCTKDPSHEKHVSETWGL 642

Query: 645 VIVTAGCDGMIKTFHNYGLPIRL 667
            IV AGCDG IKTFHN+GLPIRL
Sbjct: 643 SIVAAGCDGTIKTFHNFGLPIRL 665

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507482|ref|XP_003522494.1| PREDICTED: uncharacterized protein LOC100780979 [Glycine max]

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 343/684 (50%), Positives = 450/684 (65%), Gaps = 33/684 (4%)

Query: 1   MLSSDEGVDDVFFDSTDCLS-FEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKM 59
           ML SDEG  D+FFDS DC S   ES++ ++E G     Y+IW++EP SV ERR+ FL  +
Sbjct: 1   MLISDEGDSDLFFDSVDCFSPTRESLLTKQEFG-----YEIWVNEPVSVMERREKFLQGL 55

Query: 60  GLVEFSS-------KNEITFDDSSQMMGLDRITECSGAVSGSSMNRADENLNCF---DRE 109
           GL + SS        N ++ DDSS  +GL+RI +   A +  S    D+ ++       E
Sbjct: 56  GLGDGSSSKVCSQENNMMSSDDSSVRLGLERIRDSGAASNACSCILPDDQVSELVLSGSE 115

Query: 110 MDSEANCMVDELEQDQMNE-CVVTLEGESNGFSQSVDKFENPFPE-CKGVNI--KKVKKL 165
             SEA  + DE +    +E C      E +   Q V   +   PE C G ++  K+ K  
Sbjct: 116 ATSEAQALFDEHKGCPKDESCFEGKVYEVSCTDQEVRHRKVEVPEKCLGFDMGEKEKKNW 175

Query: 166 WKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCI 225
           WK  IS KK       S   K NS   K  ++ V+QNKK+ MEF+ALY  QEI+AH+G I
Sbjct: 176 WKHFISSKKGGGGKFRS---KLNSTTNKTRRINVRQNKKRWMEFSALYIGQEIRAHEGLI 232

Query: 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG-KIKFGKKKSS 284
           WT+KFSP+G+YLASGGEDGV+RIW V ++  S      +    S  K        K  S 
Sbjct: 233 WTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICLNAEDSAASKVKHDFSSSQKKHSSQ 292

Query: 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN 344
              +V+P+++F+IEESPL E +GH  DVLDLAWS+S+ LLS S DKTVR+W++GC+QCL+
Sbjct: 293 SSFIVLPNKIFKIEESPLHEFYGHASDVLDLAWSSSDTLLSSSSDKTVRLWKIGCSQCLS 352

Query: 345 VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 404
           VF H +YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RVVDWAD+RDVISAI Y PD K
Sbjct: 353 VFYHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDAK 412

Query: 405 GFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463
           GF+VGS+TGTC FY ASG   +LE K+  + +K+TSGNKITGIQFS+   QR+MITS+DS
Sbjct: 413 GFVVGSLTGTCRFYVASGKYFQLETKIRVNGKKRTSGNKITGIQFSQKNHQRVMITSDDS 472

Query: 464 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK 523
           K+RIL+G++++  +KGL +SGSQMS SFT+ G+HIIS+G D RVY+WN+++    SSKQ 
Sbjct: 473 KVRILEGIELVQTYKGLSRSGSQMSGSFTSGGEHIISVGGDSRVYIWNFNDSGNASSKQT 532

Query: 524 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLG 583
            S  SCEHF SEGV++A+ W G+  E++S  S+     S +   LE +  +R+SERFS G
Sbjct: 533 KSNYSCEHFGSEGVTIAIPWSGMSAEERSGSSNDFTHYSSQ-HQLEASHGVRESERFSFG 591

Query: 584 SWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWG 643
           SWFS DG CRGS TWP EKLP WD+ +    +         Q+ C  +    + +S TWG
Sbjct: 592 SWFSIDGSCRGSVTWPEEKLPSWDLPLVEVEFDH-------QKLCTKDPSHEKHVSETWG 644

Query: 644 LVIVTAGCDGMIKTFHNYGLPIRL 667
           L IV AGCDG IKTFHN+GLPIRL
Sbjct: 645 LSIVAAGCDGTIKTFHNFGLPIRL 668

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093348|ref|XP_002309892.1| predicted protein [Populus trichocarpa] gi|222852795|gb|EEE90342.1| predicted protein [Populus trichocarpa]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 319/561 (56%), Positives = 390/561 (69%), Gaps = 69/561 (12%)

Query: 1   MLSSDEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMG 60
           MLSSDEG  D+FFDS D L          ELG  KL+YDIW++EP+SVKERR+ FL  MG
Sbjct: 1   MLSSDEGESDLFFDSVDYL----------ELGCDKLEYDIWLNEPQSVKERRQGFLRGMG 50

Query: 61  LVEFSSKNEITFDDSSQMMGLDRITECSGAVSGSSM---NRADENLNCFD--REMDSEAN 115
           L  F+S       +  + +GL+RITECS AVS S +   N  + NL  +   RE +SEAN
Sbjct: 51  LGGFAS-------NIDENLGLERITECSEAVSSSLVSCTNVEEVNLVSYSAGREENSEAN 103

Query: 116 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKR 175
           CMVDE+    M++     E E+ G S               V++++              
Sbjct: 104 CMVDEILPFSMDKPGAASENENIGPS---------------VHLRQ-------------- 134

Query: 176 NVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR 235
                           PK N+ +VKQNKK  MEF+ +Y  QEIQAHKG IWT+KFSPDG+
Sbjct: 135 --------------GSPKTNRTKVKQNKKGFMEFSGVYMGQEIQAHKGFIWTMKFSPDGQ 180

Query: 236 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295
           YLA+GGED ++RIW VTSV +SCKSF+ +G   SN KEGK     KK  H  VVIP++VF
Sbjct: 181 YLATGGEDRIIRIWRVTSVDSSCKSFSSEGHSDSNLKEGKSSLRTKKRMHSSVVIPEKVF 240

Query: 296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCV 355
           QIEE+PLQE HGH  ++LDLAWS+SN+LLS SMDKTVR+W VGCN CL +F H +YVTC+
Sbjct: 241 QIEETPLQEFHGHTSEILDLAWSDSNHLLSSSMDKTVRLWLVGCNYCLGIFHHSSYVTCI 300

Query: 356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTC 415
           QFNP+D+NYFISGSIDGKVR+WGV EKRVV WADVRDVISAICY PDG+GF+VG+I G+C
Sbjct: 301 QFNPVDENYFISGSIDGKVRVWGVSEKRVVHWADVRDVISAICYQPDGRGFVVGTIIGSC 360

Query: 416 HFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI 474
            FY+ SG DL+LE ++    R + SGN+ITGIQ   +   R+MITSEDSK+R+ DGVDV+
Sbjct: 361 RFYEVSGTDLQLEAEIHIQGRNRNSGNRITGIQ---EICPRVMITSEDSKVRVFDGVDVV 417

Query: 475 HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS 534
           +KFKGLPKSGSQMSASFT+ G+HIIS+G+DCRVYVWNYD LC P SK   SVRSCE+FFS
Sbjct: 418 NKFKGLPKSGSQMSASFTSKGRHIISVGEDCRVYVWNYDGLCTPWSKHTKSVRSCEYFFS 477

Query: 535 EGVSVAVQWPGIGTEQKSLCS 555
           EGVSVAV W G GTE + L S
Sbjct: 478 EGVSVAVPWSGPGTELRGLSS 498

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528542|ref|XP_003532860.1| PREDICTED: uncharacterized protein LOC100806747 [Glycine max]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/551 (54%), Positives = 387/551 (70%), Gaps = 28/551 (5%)

Query: 126 MNECVVTLEGESNGFSQSVDKFE----NPFPECKGVNI--KKVKKLWKRIISMKKRNVET 179
           M E     +G+ + FS + ++      +   E +  N+  +K K  WKR ++++K     
Sbjct: 86  MYEADANFQGKVHEFSSTAEEHRPREADSQEEFQDFNMSKRKRKNWWKRFVNIRKGG--- 142

Query: 180 CMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLAS 239
                 + N+   K  +++V+QNKK+ +EF+ LY  QE++AHKG IW +KFSP G+YLAS
Sbjct: 143 ------EGNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGLIWKMKFSPCGQYLAS 196

Query: 240 GGEDGVVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298
           GGEDGVV IW VTS+  +S  S T+D    S  +        K SS   + +P+ +FQIE
Sbjct: 197 GGEDGVVCIWRVTSLDKSSICSTTEDSTSNSKVECDNSSPRNKHSSQPFIFLPNSIFQIE 256

Query: 299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 358
           ESPLQE  GH  DVLDLAWSNS+ LLS SMDKTVR+WQ+GCNQCLNVF H++YVTC+QFN
Sbjct: 257 ESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLNVFHHNDYVTCIQFN 316

Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 418
           P+D+NYFISGSIDGKVRIWG+ E+RV+DWAD+RDVISAI Y  DGKGF+VGS+TGTC FY
Sbjct: 317 PVDENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCCFY 376

Query: 419 KASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 477
            ASG   +LE ++D H +KK SGNKITGIQFS+  SQRIMITSEDSK+ I DG +++ K+
Sbjct: 377 VASGTYFQLEAQIDVHGKKKVSGNKITGIQFSQKNSQRIMITSEDSKICIFDGTELVQKY 436

Query: 478 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 537
           KGLPKSGSQMS SFT++GK+IIS+G+D  VY+WN+D++   SSKQ  S RSCE+FFS+GV
Sbjct: 437 KGLPKSGSQMSGSFTSSGKNIISVGEDSHVYIWNFDDMGNASSKQTKSERSCEYFFSKGV 496

Query: 538 SVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA 596
           +VA+ W G+  +Q+ S  + S R        LE AP  RD E FSLG+WF+ DG CRGS 
Sbjct: 497 TVAIPWSGMKADQRDSSGNYSHRSSEMPTQQLEVAPETRDHELFSLGNWFTTDGSCRGSM 556

Query: 597 TWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIK 656
           TWP EKLP WD+ I      ++ QQ   +  C +     R++S TWGL IV AGCDG IK
Sbjct: 557 TWPEEKLPSWDLPI-----AEEDQQLSHKDNCHD-----RSVSETWGLSIVAAGCDGTIK 606

Query: 657 TFHNYGLPIRL 667
           TFHN+GLP+RL
Sbjct: 607 TFHNFGLPVRL 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	667
TAIR|locus:2028539	593	AT1G48870 [Arabidopsis thalian	0.505	0.568	0.512	7.3e-115
TAIR|locus:2169769	698	AT5G24320 "AT5G24320" [Arabido	0.523	0.5	0.450	3.5e-107
TAIR|locus:2181733	905	AT5G02430 "AT5G02430" [Arabido	0.380	0.280	0.455	2e-101
TAIR|locus:2153443	825	AT5G54200 "AT5G54200" [Arabido	0.553	0.447	0.412	1.7e-99
TAIR|locus:2165700	709	AT5G42010 "AT5G42010" [Arabido	0.536	0.504	0.438	3.8e-98
TAIR|locus:2168606	654	AT5G53500 "AT5G53500" [Arabido	0.395	0.403	0.520	3.7e-97
TAIR|locus:2040731	903	AT2G37670 "AT2G37670" [Arabido	0.577	0.426	0.391	4.5e-96
TAIR|locus:2019494	647	AT1G64610 "AT1G64610" [Arabido	0.380	0.392	0.505	4.3e-92
TAIR|locus:2090146	883	AT3G15470 "AT3G15470" [Arabido	0.563	0.425	0.404	6.2e-91
WB|WBGene00006369	1043	sym-4 [Caenorhabditis elegans	0.490	0.313	0.333	1.9e-47

TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 7.3e-115, Sum P(3) = 7.3e-115
 Identities = 185/361 (51%), Positives = 235/361 (65%)

Query:   186 KPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGV 245
             K  S +   +K++VK NKK  +E +A Y  Q+I  HKG IWTLKFSPDG+YLA+GGEDGV
Sbjct:   162 KYKSSEETMSKVKVKTNKKSHVELSAAYMVQKINGHKGKIWTLKFSPDGKYLATGGEDGV 221

Query:   246 VRIWHVTSVAASCKSFT-DDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQE 304
             V+IW +T   +   SF          A                V+ P + F IEE+P QE
Sbjct:   222 VKIWRITLSDSLLASFLRQQEPINQQAAL--------------VLFPQKAFHIEETPFQE 267

Query:   305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364
             L+GH GDVLDLAWS+SN LLS S DKTVR+W+ GC+QCL+VF H+NYVTCV+FNP++ N 
Sbjct:   268 LYGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFHHNNYVTCVEFNPVNKNN 327

Query:   365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424
             F SGSIDGK RIWG+ E+RVV W DVRD ISAI Y P+G GF+VG ITG C FY+   ND
Sbjct:   328 FASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNGNGFVVGCITGNCRFYQILDND 387

Query:   425 LKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS 483
             + + E++    R     N+IT ++F    S++I+++SEDSK+RI D   +IHKFK     
Sbjct:   388 VIMDEQILIRGR-----NRITAVEFCPGSSEKILVSSEDSKVRIFDKTQMIHKFKAPSNF 442

Query:   484 GSQMSASF-TTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ 542
             G Q SASF ++TGKHI+S+     VY+WN D   FPS K   S RS E+F S GVS    
Sbjct:   443 GRQSSASFVSSTGKHILSVRRGVGVYLWNND--AFPSRKGAKSSRSFEYFHSPGVSAVAA 500

Query:   543 W 543
             W
Sbjct:   501 W 501

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 3.5e-107, Sum P(3) = 3.5e-107
 Identities = 176/391 (45%), Positives = 238/391 (60%)

Query:   288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 347
             V+IP ++F++ + PL E  GH GD+LD++WS +N LLS S+D +VR+WQ+GC  CL +F 
Sbjct:   335 VIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFS 394

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H+NYVT VQFNP+DD++FISGSIDGKVRIW   + +VVDWAD R +++A+CY PDG+  I
Sbjct:   395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVI 454

Query:   408 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF-----SRDESQRIMITSE 461
             +G++T  C FY  SG+ L+L+  +  H++KK+S  +I G QF     S D S R+M+ S 
Sbjct:   455 IGTLTSDCRFYNVSGHCLQLDGHICLHNKKKSSNKRIIGFQFLLQFDSTDPS-RVMVASA 513

Query:   462 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN---YD-ELCF 517
             DS++RI+ G +V+HK+KG   +G+Q+SASFT  GKHI+S  DD  VYVWN   +D E   
Sbjct:   514 DSQVRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHDPEQSS 573

Query:   518 P---SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWI 574
             P   S  ++  +RS E F S  VSVA+ W G       L   S           E +P +
Sbjct:   574 PGFFSHTKRLKIRSFEKF-SADVSVAIPWCGF---TPVLSGGS-----------ELSPSL 618

Query:   575 RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCXXXXXXXXXXXCLNNVDD 634
                  FSLG  +  D P +GSATWP EKL      + +               C    + 
Sbjct:   619 -----FSLGREYVLDSP-KGSATWPEEKLASSFSPVKA---IRRSHYKFLRSSCRRTSES 669

Query:   635 VRAISATWGLVIVTAGCDGMIKTFHNYGLPI 665
                 S  WGLVIVT G DG IK FHNYGLP+
Sbjct:   670 ----SHLWGLVIVTGGWDGRIKLFHNYGLPV 696

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 2.0e-101, Sum P(5) = 2.0e-101
 Identities = 119/261 (45%), Positives = 169/261 (64%)

Query:   291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 350
             P+ VF + + P+    GH  DVLDL+WS S  LLS SMDKTVR+W +    CL +F H++
Sbjct:   501 PETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHND 560

Query:   351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410
             YVTCVQFNP+D++YFISGS+D K+RIW +  ++VV+W D++++++A+CY PDG+   VGS
Sbjct:   561 YVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAFVGS 620

Query:   411 ITGTCHFYKASGNDLKLEK---VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467
             I G C  Y A   D KLE+   +D  ++KK    KIT  QFS      +++TS DS++R+
Sbjct:   621 INGHCRLYSAE--DCKLEQTNQIDLQNKKKAQAKKITAFQFSPINPSEVLVTSADSRIRV 678

Query:   468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE--LCFPSSKQKNS 525
             LDG +++ KF+G     SQM+AS+T   KHI+   +D +VYVW ++E  L     K    
Sbjct:   679 LDGTELVQKFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYVWKHEEPRLGITGRKTVTM 738

Query:   526 VRSCEHFFSEGVSVAVQWPGI 546
               S E F  + VSVAV W G+
Sbjct:   739 CTSYETFPCKDVSVAVPWNGV 759

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 1.7e-99, Sum P(3) = 1.7e-99
 Identities = 161/390 (41%), Positives = 227/390 (58%)

Query:   288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 347
             V++P+ VF + E P+    GH  DVLDL+WS S +LLS SMDKTVR+W +    CL VF 
Sbjct:   447 VLVPEAVFGLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFS 506

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H +YVTC+QFNP+DDNYFISGS+D KVRIW + + +VVDW D+ ++++A CY PDG+G +
Sbjct:   507 HSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGAL 566

Query:   408 VGSITGTCHFYKASGNDLKLEK-VDFHDRKK-TSGNKITGIQFSRDESQRIMITSEDSKL 465
             VGS  GTC  Y    N L+  + ++  +RKK T   KITG QF    S  +++TS DS+ 
Sbjct:   567 VGSYKGTCCLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSSSEVLVTSADSRT 626

Query:   466 RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD-ELCFPSSKQKN 524
             R++DGVD++HKFKG   + SQ+SAS T+ GK ++S  +D  VYVWNYD +     SK+  
Sbjct:   627 RVVDGVDLVHKFKGFRNTNSQISASLTSNGKFLVSASEDSNVYVWNYDSDSRAGRSKRVT 686

Query:   525 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRD---SERFS 581
                S E+F+   VSVA  WPG  +   +  ++S    S   +N    P + D   ++  +
Sbjct:   687 VTNSYENFYCRDVSVAAPWPGKISNNHT--NNSPEQSSFTANNNPPTP-VNDPTNNKTVT 743

Query:   582 LGSWFSNDGPC---RGSATWPAEKLPLWDVTIDSDGYCXXXXXXXXXXXCLNNVD-DVRA 637
              G   S        R SATWP EKL L                       ++N+  + + 
Sbjct:   744 NGIISSATNRYFFDRVSATWPEEKLLL--------AAKNRARTSPRVSVDMSNIQVNTKP 795

Query:   638 ISATWGLVIVTAGCDGMIKTFHNYGLPIRL 667
              ++ W +VIVT    G I+ F N+G P+RL
Sbjct:   796 SASAWSMVIVTGSLRGEIRIFQNFGFPVRL 825

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 3.8e-98, Sum P(3) = 3.8e-98
 Identities = 170/388 (43%), Positives = 238/388 (61%)

Query:   289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-QCLNVFD 347
             V+P +VF I E+P  E  GH G++LDL+WS   +LLS S+D+TVR+W+VG + +C+ VF 
Sbjct:   343 VLPSKVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFS 402

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H ++VTCV FNP+DDNYFISGSIDGKVRIW V + RVVD+ D+R +++A+CY PDGKG +
Sbjct:   403 HKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALCYRPDGKGAV 462

Query:   408 VGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 466
             VGS+TG C FY  + N L+L++ +  H +KK    +ITG QF   +S ++M+TS DS++R
Sbjct:   463 VGSMTGECRFYHTTDNQLQLDRDISLHGKKKVPNKRITGFQFFPGDSDKVMVTSADSQIR 522

Query:   467 ILDGVDVIHKFKGLPKSGSQ-MS---ASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 522
             I+ GVD I K K      +  MS   ASFT+ GKHI+S  ++  ++VW++ +    +S Q
Sbjct:   523 IICGVDTICKLKKASSLRTTLMSPTFASFTSDGKHIVSTIEESGIHVWDFSQPNKKASSQ 582

Query:   523 K-NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFS 581
             K  ++RS E F S  VSVA+ W G G E      S + D  + + +    P   D     
Sbjct:   583 KPKTIRSYEGFLSRNVSVAIPWLGQGKED-----SIIADLEKSFAHF---PVPLD----- 629

Query:   582 LGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCXXXXXXXXXXXCLNNV-DDVRAISA 640
                +FS   P +G+ TWP EKL +  V   +                L +V  +V   + 
Sbjct:   630 ---YFS---PMKGATTWPEEKLGV--VAGTAAAAVSATVSSRSKLRLLKSVCQNVHGSTP 681

Query:   641 -TWGLVIVTAGCDGMIKTFHNYGLPIRL 667
               WGLVIVTA  DG I+ FHNYGLPIR+
Sbjct:   682 HLWGLVIVTATWDGSIRVFHNYGLPIRV 709

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
 Identities = 141/271 (52%), Positives = 190/271 (70%)

Query:   288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 347
             VV P +VF+I E PL E  GH G+VLD++WS  NYLLS SMDKTVR+W+VG N CL VF 
Sbjct:   307 VVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFA 366

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H++YVT VQFNP+++NYF+SGSIDGKVRIW +    VVDWAD++D+ISA+CY PDG+G I
Sbjct:   367 HNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGI 426

Query:   408 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 466
             +GS+ G+C F+  SG  L+L+ ++  H++KK+S  +ITG QF   E  ++++ S DSK+R
Sbjct:   427 IGSLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKRITGFQFLPQEPTKVLVVSADSKVR 486

Query:   467 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 526
             IL G +V+ K+KG+ K+ S  SAS T+ GKHI+S  +D  VY+W+ DE     S+ K  +
Sbjct:   487 ILQGNNVVRKYKGVCKTRSLTSASLTSDGKHIVSACEDSNVYIWSNDE----ESETKK-I 541

Query:   527 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 557
             RS E F S   SVA  W G      +L  SS
Sbjct:   542 RSFERF-SANASVAATWCGFSDHNTTLPFSS 571

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 4.5e-96, Sum P(4) = 4.5e-96
 Identities = 159/406 (39%), Positives = 234/406 (57%)

Query:   158 NIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK-MEVKQNKKKCMEFTALYTSQ 216
             NIK V       ++ K  +  +  S K+  + +  KAN+ ++V+   K   E +AL+  Q
Sbjct:   339 NIKGVAHSMSLRVADKDVSDGSTDSPKKGKDHKHGKANEWVKVRPTGKSYKELSALHMCQ 398

Query:   217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT----------SVAASCKSFTDDGG 266
             EIQAH+G +WT+KFS D  YLASGG D V+ +W V           S+     S  D  G
Sbjct:   399 EIQAHEGAVWTIKFSQDAHYLASGGADRVIHVWEVQECELMSMNEGSLTPIHPSLCDSSG 458

Query:   267 FGSNAXXXXXXXXXXXS---SHVP--VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN 321
                                 +H+P  V +P+ VF   + P+  L GH   +LDL+WS S 
Sbjct:   459 NEITVVEKKKKGKGSSGRRHNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQ 518

Query:   322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
              LLS SMDKTVR+W +    CL +F H++YVTC+QF+P+D+NYF+SGS+D K+RIW + +
Sbjct:   519 LLLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQD 578

Query:   382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDFHDRKKTSG 440
             + VV+W+D+ ++++A CY PDG+G ++GS  G C  Y      L +  ++D    KK+  
Sbjct:   579 RHVVEWSDLHEMVTAACYTPDGQGALIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQA 638

Query:   441 N-KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 499
               KIT  QFS      +++TS DS++RILDG +VIHKFKG   + SQ+SAS++  GK+II
Sbjct:   639 KRKITSFQFSPVNPSEVLVTSADSRIRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYII 698

Query:   500 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 545
                +D +VY+W  D   F  ++   + +S EHF  + VS AV W G
Sbjct:   699 CASEDSQVYLWKND---FHRTRSTLTTQSHEHFHCKDVSAAVPWHG 741

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
 Identities = 132/261 (50%), Positives = 182/261 (69%)

Query:   288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 347
             VV+P  +F I E PL E  GH G++LDL+WS   YLLS S+D+TVR+W+VGC++CL  F 
Sbjct:   301 VVLPPTIFSISEKPLHEFKGHIGEILDLSWSEKGYLLSSSVDETVRLWRVGCDECLRTFT 360

Query:   348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
             H+N+VTCV FNP+DDNYFISGSIDGKVRIW V   RVVD+ D+RD+++A+CY PD KG +
Sbjct:   361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVCYRPDAKGAV 420

Query:   408 VGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQF--SRDESQRIMITSEDSK 464
             +GS+TG C FY    N L++++ ++ H +KK +  +I+G+Q+  S  +S ++M+TS DS+
Sbjct:   421 IGSMTGNCRFYHIFENQLQMDQEINVHGKKKVASKRISGLQYLPSDSDSDKVMVTSADSQ 480

Query:   465 LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF--PSSKQ 522
             +RI+ G DVI K K    S    SASF + GKHIIS  +D  + VW+Y +L    P S+ 
Sbjct:   481 IRIICGEDVICKLKA--SSLRTTSASFISDGKHIISTSEDSYINVWSYSQLPSKKPYSET 538

Query:   523 KNSVRSCEHFFSEGVSVAVQW 543
               S+RS E F S   SVA+ W
Sbjct:   539 PKSIRSYEGFLSHNASVAIPW 559

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
 Identities = 161/398 (40%), Positives = 234/398 (58%)

Query:   196 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA 255
             ++ V+Q  K   E TALY +QEIQAH G IW++KFS DG+YLAS GED ++ IW V    
Sbjct:   387 RVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAE 446

Query:   256 ASCKSFTD---------DGGFGSNAXXXXXXXXXXXS----SHVPVVIPDEVFQIEESPL 302
                +   D         +G                 S    S   + +PD +F + E P 
Sbjct:   447 KKGELLLDRPELLLLATNGSPEPTTMSPRRRGRTSISRKSLSLENIFVPDSLFGLSEKPF 506

Query:   303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD 362
                 GH  DVLDLAWS S +LLS SMDKTVR+W +    CL VF H +YVTC+QFNP+DD
Sbjct:   507 CSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDD 566

Query:   363 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422
              YFISGS+D KVR+W + +++VVDW D+ +++++ CY PDG+G +VGS  G+C  Y AS 
Sbjct:   567 RYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMYSASD 626

Query:   423 NDLKLE-KVDFHDRKKTSGNK-ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL 480
             N L+ + +++  ++KK +  K ITG QF    S  +++TS DS++R++DG D+++K KG 
Sbjct:   627 NKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVDGTDLVNKLKGF 686

Query:   481 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS-----VRSCEHFFSE 535
               + SQ+SAS T  GK+++S  +D  VY+W Y+      S+  N+       S EHF S+
Sbjct:   687 RNTSSQISASITADGKYVVSASEDSHVYIWKYESPASRPSRSNNNKNVTVTNSYEHFHSQ 746

Query:   536 GVSVAVQWPGIGTEQK--SLCSSSLRDCSQKWDNLETA 571
              VS A+ WPG+ + +   +   +     +   DN+ TA
Sbjct:   747 DVSAAISWPGMASTENWGTQNRAGFNGSTNNLDNISTA 784

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

WB|WBGene00006369 sym-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 496 (179.7 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
 Identities = 118/354 (33%), Positives = 184/354 (51%)

Query:   194 ANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252
             +N +  +++KK   +F  L   QE+   H G IW +KFS  G+ +A+ G+D ++R+W V 
Sbjct:   588 SNIVRPRKSKKGPYDFEHLTVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVWVVR 647

Query:   253 S-----------VAASCKSFTDDGGFGSNAXXXX--XXXXXXXSSHVPVVIPDEVFQIEE 299
             S            AA+     D      N              +S       D       
Sbjct:   648 SHLQYFSDMREKYAANANPEADPMNSVDNMEHFRPPSSMESVVNSEATTASDDNNGLFCA 707

Query:   300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 359
              P   L GH  D+LD++WS + ++LS  MD+TV++W +  N+CL  F H ++VTCV F P
Sbjct:   708 KPFALLKGHTADILDVSWSKNYFILSSGMDRTVKLWHLSRNECLCCFQHIDFVTCVAFLP 767

Query:   360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RDVISAICYIPDGKGFIVGSITGTCHFY 418
              DD YF+SGS+DGK+R+W + +K+V  W D  +  I+A+ ++  GK  +VG+  G C FY
Sbjct:   768 KDDRYFLSGSLDGKLRMWHIPDKKVAVWNDTEKKYITAMTFVKSGKFAVVGTYDGKCIFY 827

Query:   419 KASGNDLKLEK-VDFHDR--KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--V 473
               + + LK    VD      K   G+K+TG+    D   ++++TS DS++R+ D  D  +
Sbjct:   828 --TSDQLKYHTAVDVRSTRGKNARGHKVTGLTSHGD---KLLVTSNDSRIRMYDIRDKAL 882

Query:   474 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--KQKNS 525
               KFKG+    SQ+ A+F+  G+HII   +D  VY+W   +     S  K +NS
Sbjct:   883 TCKFKGVQNDHSQIRAAFSPDGRHIICGSEDKFVYIWRASDTTVALSVRKDRNS 936

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	667
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
smart00320	40	smart00320, WD40, WD40 repeats	3e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	3e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	6e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  119 bits (301), Expect = 4e-30
 Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 63/299 (21%)

Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF 278
           + H G +  +  S DG YLASG  D  +R+W                          ++ 
Sbjct: 48  KGHTGPVRDVAASADGTYLASGSSDKTIRLW-------------------------DLET 82

Query: 279 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV 337
           G+                     ++ L GH   V  +A+S     L S S DKT+++W V
Sbjct: 83  GEC--------------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 338 GCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIW-GVCEKRVVDWADVRDVIS 395
              +CL     H  +V  V F+P D  +  S S DG +++W     K V         ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455
           ++ + PDG+  +  S  GT   +  S     L  +  H+      N +  + FS D    
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHE------NGVNSVAFSPD--GY 232

Query: 456 IMIT-SEDSKLRI--LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511
           ++ + SED  +R+  L   + +    G   S +  S +++  GK + S   D  + +W+
Sbjct: 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT--SLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (250), Expect = 3e-23
 Identities = 55/259 (21%), Positives = 99/259 (38%), Gaps = 65/259 (25%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
           + +  H   + ++ FSPDGR L+S   D  +++W V +                      
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---------------------- 124

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 334
                                     L  L GH   V  +A+S +  ++ S S D T+++
Sbjct: 125 -----------------------GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Query: 335 WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RD 392
           W +   +C+     H   V  V F+P D    +S S DG +++W +   + +       +
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220

Query: 393 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF----HDRKKTSGNKITGIQF 448
            ++++ + PDG     GS  GT   +     DL+  +       H       N +T + +
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVW-----DLRTGECVQTLSGHT------NSVTSLAW 269

Query: 449 SRDESQRIMITSEDSKLRI 467
           S D  +R+   S D  +RI
Sbjct: 270 SPD-GKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.0 bits (245), Expect = 8e-22
 Identities = 71/344 (20%), Positives = 122/344 (35%), Gaps = 23/344 (6%)

Query: 184 KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGED 243
                S     + + +       +      +S  ++ H+  I ++ FSPDG  L SG  D
Sbjct: 27  SLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSD 86

Query: 244 GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK---KSSHVPVVIPDEVFQIEES 300
           G +++W + +     KS         +        G      SS +   +          
Sbjct: 87  GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146

Query: 301 PLQELHGHKGDVLDLAWSNSNYLL--SCSMDKTVRMWQVGCNQCLNVFDHHN-YVTCVQF 357
            ++ L GH   V  LA+S    LL    S+D T+++W +   + L+    H   V+ + F
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206

Query: 358 NPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG 413
           +P       SGS DG +R+W    G   +  +       V     + PDG     GS  G
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV---SSFSPDGSLLASGSSDG 263

Query: 414 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GV 471
           T   +    +   L  +  H         +  + FS D    +   S D  +R+ D    
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSS------SVLSVAFSPDGKL-LASGSSDGTVRLWDLETG 316

Query: 472 DVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDE 514
            ++         G   S SF+  G  +     DD  + +W+   
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.9 bits (224), Expect = 3e-19
 Identities = 66/318 (20%), Positives = 117/318 (36%), Gaps = 18/318 (5%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 273
            + ++ H   + +L FSPDG+ LASG   DG +++W + +      +        S+   
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAF 206

Query: 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 333
                    S      I        +     L GH   V+     + + L S S D T+R
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266

Query: 334 MWQV-GCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 391
           +W +   +  L     H+  V  V F+P D     SGS DG VR+W +   +++    ++
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 392 ---DVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447
                +S++ + PDG   + G S  GT   +                +     + +  + 
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT--------GKPLKTLEGHSNVLSVS 377

Query: 448 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 507
           FS D  + +   S D  +R+ D             +    S  F+  GK + S   D  +
Sbjct: 378 FSPDG-RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436

Query: 508 YVWNYDELCFPSSKQKNS 525
            +W+        S   + 
Sbjct: 437 RLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 48/164 (29%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
             +  H G + ++ FSPDG  L S   DG +++W                    +   GK
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--------------------DLSTGK 210

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL-SCSMDKTVRM 334
                                     L  L GH+  V  +A+S   YLL S S D T+R+
Sbjct: 211 -------------------------CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245

Query: 335 WQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           W +   +C+     H N VT + ++P D     SGS DG +RIW
Sbjct: 246 WDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 36/278 (12%)

Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
             + L GH G V  +A+S +   L + S D T+++W +   + L     H   V  V  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 359 PIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT 414
             D  Y  SGS D  +R+W    G C   V         +S++ + PDG+     S   T
Sbjct: 61  A-DGTYLASGSSDKTIRLWDLETGEC---VRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-- 472
              +                        +  + FS D    +  +S+D  +++ D     
Sbjct: 117 IKVWDVETGKCLTT---LRGHTDW----VNSVAFSPD-GTFVASSSQDGTIKLWDLRTGK 168

Query: 473 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 532
            +    G     +  S +F+  G+ ++S   D  + +W+       + K   ++R  E+ 
Sbjct: 169 CVATLTGHTGEVN--SVAFSPDGEKLLSSSSDGTIKLWDLS-----TGKCLGTLRGHENG 221

Query: 533 FSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET 570
                SVA       +    L +S   D + +  +L T
Sbjct: 222 V---NSVAF------SPDGYLLASGSEDGTIRVWDLRT 250

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 46/124 (37%)

Query: 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 273
               ++ H+  + ++ FSPDG  LASG EDG +R+W + +                    
Sbjct: 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-------------------- 250

Query: 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTV 332
                                       +Q L GH   V  LAWS     L S S D T+
Sbjct: 251 -------------------------GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Query: 333 RMWQ 336
           R+W 
Sbjct: 286 RIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250
           + ++ H G + ++ FSPDG+YLASG +DG +++W 
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250
           + ++ H G + ++ FSPDG  LASG +DG VR+W 
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 299 ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
              L+ L GH G V  +A+S + N L S S D TVR+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 300 SPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
             L+ L GH G V  +A+S +  YL S S D T+++W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 341 QCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           + L     H   VT V F+P D  Y  SGS DG +++W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 341 QCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIW 377
           + L     H   VT V F+P D N   SGS DG VR+W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 18/103 (17%)

Query: 296 QIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCN----------QCL 343
           Q+ + P+ +L GH   +LDL ++   S  L S S D T+R+W++  N          QC+
Sbjct: 61  QMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120

Query: 344 NVFDHHNYVTCVQFNPIDDNYFI--SGSIDGKVRIWGV-CEKR 383
            +  H   ++ + +NP+  NY+I  S   D  V IW +  EKR
Sbjct: 121 -LKGHKKKISIIDWNPM--NYYIMCSSGFDSFVNIWDIENEKR 160

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 14/149 (9%)

Query: 218 IQAHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 276
           ++ H+G + +L FSPDG  L SGG +DG +R+W +                 SN      
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL-----RTGKPLKTLEGHSNVLSVSF 378

Query: 277 KFGKKKSSHVP----VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT 331
               +  S       V + D       S L+ L GH   V  L +S     L S S D T
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLS---TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Query: 332 VRMWQVGCNQCLNVFDHHNYVTCVQFNPI 360
           +R+W +  +     F     V   + + +
Sbjct: 436 IRLWDLKTSLKSVSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.8 bits (100), Expect = 6e-04
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 37/182 (20%)

Query: 217 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHV----------TSVAASCKSFTDDG 265
           E++ H+  +W++ +S  D   LASG +DG V++W +          T     C  F  + 
Sbjct: 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629

Query: 266 G----FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN 321
           G    FGS   + K+ +   ++  +P              L  + GH   V  + + +S+
Sbjct: 630 GRSLAFGS--ADHKVYYYDLRNPKLP--------------LCTMIGHSKTVSYVRFVDSS 673

Query: 322 YLLSCSMDKTVRMWQV-----GCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 375
            L+S S D T+++W +     G N+  L+ F  H  V       + D Y  +GS   +V 
Sbjct: 674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF 733

Query: 376 IW 377
           ++
Sbjct: 734 VY 735

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	667
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG0641	350	consensus WD40 repeat protein [General function pr	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.87
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.85
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.84
KOG4227	609	consensus WD40 repeat protein [General function pr	99.84
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.83
KOG0267	825	consensus Microtubule severing protein katanin p80	99.83
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG0646	476	consensus WD40 repeat protein [General function pr	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.78
KOG1539	910	consensus WD repeat protein [General function pred	99.78
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.78
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.77
KOG1273	405	consensus WD40 repeat protein [General function pr	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.76
KOG1274	933	consensus WD40 repeat protein [General function pr	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.72
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.71
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
COG2319	466	FOG: WD40 repeat [General function prediction only	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.68
KOG1963	792	consensus WD40 repeat protein [General function pr	99.66
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.63
KOG4227	609	consensus WD40 repeat protein [General function pr	99.63
KOG0649	325	consensus WD40 repeat protein [General function pr	99.63
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.63
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.62
KOG1188	376	consensus WD40 repeat protein [General function pr	99.62
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.6
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.59
KOG2139	445	consensus WD40 repeat protein [General function pr	99.59
KOG1310	758	consensus WD40 repeat protein [General function pr	99.59
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.59
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.58
KOG0649	325	consensus WD40 repeat protein [General function pr	99.57
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.57
PRK01742	429	tolB translocation protein TolB; Provisional	99.57
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.57
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.56
KOG1963	792	consensus WD40 repeat protein [General function pr	99.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.55
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.54
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.53
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.52
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.51
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.45
PRK04922	433	tolB translocation protein TolB; Provisional	99.44
KOG2139	445	consensus WD40 repeat protein [General function pr	99.44
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.42
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.42
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.36
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.34
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.29
KOG1334	559	consensus WD40 repeat protein [General function pr	99.29
PRK04792	448	tolB translocation protein TolB; Provisional	99.29
KOG2321	703	consensus WD40 repeat protein [General function pr	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.27
KOG2315	566	consensus Predicted translation initiation factor	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.22
PRK01029	428	tolB translocation protein TolB; Provisional	99.2
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.19
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.18
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.18
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.17
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.17
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.14
PRK01029	428	tolB translocation protein TolB; Provisional	99.13
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.11
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.03
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.02
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.99
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.97
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.95
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.94
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.94
KOG2314	698	consensus Translation initiation factor 3, subunit	98.92
PRK04043	419	tolB translocation protein TolB; Provisional	98.91
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.9
PRK04043	419	tolB translocation protein TolB; Provisional	98.89
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.88
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.87
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.85
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.85
KOG2314	698	consensus Translation initiation factor 3, subunit	98.84
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.84
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.82
KOG4547	541	consensus WD40 repeat-containing protein [General	98.82
COG4946	668	Uncharacterized protein related to the periplasmic	98.8
COG4946	668	Uncharacterized protein related to the periplasmic	98.79
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.78
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.76
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.73
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.7
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.66
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.65
KOG2315	566	consensus Predicted translation initiation factor	98.65
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.6
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.59
KOG2695	425	consensus WD40 repeat protein [General function pr	98.58
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.55
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.54
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.52
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.51
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.49
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.48
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.47
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.47
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.44
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.43
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.41
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.4
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.39
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.36
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.32
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.28
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.25
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.25
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.23
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.23
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.22
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.21
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.17
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.15
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.15
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.14
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.1
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.09
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.07
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.05
KOG2695	425	consensus WD40 repeat protein [General function pr	98.05
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.04
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.04
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.03
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.02
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.99
PRK02888	635	nitrous-oxide reductase; Validated	97.97
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.95
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.93
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.85
KOG3621	726	consensus WD40 repeat-containing protein [General	97.69
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.66
PRK02888	635	nitrous-oxide reductase; Validated	97.6
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.59
KOG3621	726	consensus WD40 repeat-containing protein [General	97.59
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.58
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.55
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.52
COG3391	381	Uncharacterized conserved protein [Function unknow	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.5
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.42
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.38
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.32
COG3391	381	Uncharacterized conserved protein [Function unknow	97.31
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.29
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.26
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.26
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.26
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.18
KOG2395	644	consensus Protein involved in vacuole import and d	97.18
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.11
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.91
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.85
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.79
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.7
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.67
PRK13616	591	lipoprotein LpqB; Provisional	96.66
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.64
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.64
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.56
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.44
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.41
PRK13616	591	lipoprotein LpqB; Provisional	96.32
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.3
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.26
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.15
KOG2444	238	consensus WD40 repeat protein [General function pr	96.14
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.97
KOG2395	644	consensus Protein involved in vacuole import and d	95.95
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.94
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.79
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.74
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.65
PHA02713	557	hypothetical protein; Provisional	95.63
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.54
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.37
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.19
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.19
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.18
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.12
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.08
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.01
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.91
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.71
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.67
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.63
PHA03098	534	kelch-like protein; Provisional	94.61
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.58
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.29
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.23
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.94
PRK10115	686	protease 2; Provisional	93.83
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.78
PHA02713	557	hypothetical protein; Provisional	93.63
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.5
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.39
COG5167	776	VID27 Protein involved in vacuole import and degra	93.36
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.13
KOG2444	238	consensus WD40 repeat protein [General function pr	92.8
PHA02790	480	Kelch-like protein; Provisional	92.68
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.5
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.44
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.42
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.05
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.03
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.96
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.75
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.61
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.09
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.07
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.73
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.53
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.49
COG5167	776	VID27 Protein involved in vacuole import and degra	90.45
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.0
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.68
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.47
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.26
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.99
PHA03098	534	kelch-like protein; Provisional	88.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.46
PLN02153	341	epithiospecifier protein	88.27
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.12
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.08
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.96
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	87.42
PRK13684	334	Ycf48-like protein; Provisional	87.23
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	86.74
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	86.3
PLN02193	470	nitrile-specifier protein	85.96
PRK10115	686	protease 2; Provisional	85.96
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.75
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.67
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	85.46
PHA02790	480	Kelch-like protein; Provisional	85.33
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.23
PRK13684	334	Ycf48-like protein; Provisional	85.22
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	85.01
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	84.92
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.61
COG5276	370	Uncharacterized conserved protein [Function unknow	83.41
PF13449	326	Phytase-like: Esterase-like activity of phytase	82.85
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.33
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	82.05
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	80.98

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-76  Score=632.79  Aligned_cols=625  Identities=39%  Similarity=0.671  Sum_probs=454.6

Q ss_pred             CCCcccceeeccccccccccccccccCCCCCccccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCcccCCC--------
Q 005956            5 DEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSK-NEITFDDS--------   75 (667)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------   75 (667)
                      .|||||.|||+.|+++.               .|++|+..|.||.|||++||++|||+..... +.++....        
T Consensus         5 ~~ee~~~f~~~~~~~~~---------------~~~~w~~~p~sv~err~~~l~~mgls~~~~~~~~~~~~~~~~~~~~~~   69 (712)
T KOG0283|consen    5 GEEEEDRFFDASERVSP---------------DYDLWTSSPGSVSERRRKFLNGMGLSSKKTLSRSETVDRLSSSSVESN   69 (712)
T ss_pred             cccccccccccccccCc---------------chhhhhcCccchhHHHHHHhhhhccccccccccccccccccccccccc
Confidence            34556999999999962               1999999999999999999999999955322 22211111        


Q ss_pred             ---ccccCcccccc--cCcccccCCCCCCCCCccccccccCCCceeEeec---------cccccCCceEEeecccc-ccc
Q 005956           76 ---SQMMGLDRITE--CSGAVSGSSMNRADENLNCFDREMDSEANCMVDE---------LEQDQMNECVVTLEGES-NGF  140 (667)
Q Consensus        76 ---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~  140 (667)
                         +.+..++....  +..+. ..+...-..-..+  -..+.|.++++.+         +.+.|.+...+.++++. .|.
T Consensus        70 ~~~~~~~~v~~~~~~~~~~~~-~~s~~~~~~~~~~--~~~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~  146 (712)
T KOG0283|consen   70 VDESNHNSVEDTDSEQCRPSS-SSSKSRVSQSSSS--IELDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGE  146 (712)
T ss_pred             ccccccccccccccccCCccc-ccccccccccccc--eeecccceeeEeeccCccccccccCCCcccccccccccCCcCc
Confidence               01100111000  00000 0000000011112  1158889999977         55677788899999998 788


Q ss_pred             chhhhhhcCCCCCC------------CCc-----chhhhHhHHHHHHhhhcccch-------h--hcccc----------
Q 005956          141 SQSVDKFENPFPEC------------KGV-----NIKKVKKLWKRIISMKKRNVE-------T--CMSEK----------  184 (667)
Q Consensus       141 ~~~~~~l~~~~~~~------------~~~-----~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~----------  184 (667)
                      ++.+.+|++.....            ...     ..++.+.|++++..+......       .  .....          
T Consensus       147 ~~~v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~  226 (712)
T KOG0283|consen  147 SSRVKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPK  226 (712)
T ss_pred             ccchhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhhccccccccccccccccccccccchhcccccccccc
Confidence            88888887722111            111     113344577776655221000       0  00000          


Q ss_pred             CCC--CCCCCCcchhHHhhcccccccccccccceeec-cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeee
Q 005956          185 RKP--NSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF  261 (667)
Q Consensus       185 ~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~l~-~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~  261 (667)
                      ...  ......++++++++++|..+++..+++.|+++ +|.++||+|+||+||+|||+||+||.|+||.+...+......
T Consensus       227 ~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~  306 (712)
T KOG0283|consen  227 SSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAE  306 (712)
T ss_pred             cccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccc
Confidence            000  11113348899999999999999999999999 999999999999999999999999999999998633222211


Q ss_pred             CC----------CCCc---cc--cCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEE
Q 005956          262 TD----------DGGF---GS--NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSC  326 (667)
Q Consensus       262 ~~----------~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~  326 (667)
                      ..          .+..   ..  ....+......+.....++.++..++.+..+|++.|.||.+.|++|.|+.+++|+++
T Consensus       307 ~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS  386 (712)
T KOG0283|consen  307 GDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS  386 (712)
T ss_pred             cccchhhhhhhhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEec
Confidence            11          1100   00  111223334444455556888999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE
Q 005956          327 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF  406 (667)
Q Consensus       327 s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l  406 (667)
                      ++|+|||||++...+|+++|.|.+.|+|++|+|.|++||++|+.||+||||++...+++.|.+.++.|+++||.|||++.
T Consensus       387 SMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~a  466 (712)
T KOG0283|consen  387 SMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGA  466 (712)
T ss_pred             cccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC--CcceeeEEeCCCC
Q 005956          407 IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDVIHKFKGLPKS  483 (667)
Q Consensus       407 ~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~--~~~~~~~~~~~~~  483 (667)
                      ++|+.+|.|++|+..+.++... .+..+..++....+||+++|.|.....+++++.|..|||||+  .+++++|++..+.
T Consensus       467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~  546 (712)
T KOG0283|consen  467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT  546 (712)
T ss_pred             EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence            9999999999999999998877 788877777766699999999987778999999999999999  6899999999888


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc-cccccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcC
Q 005956          484 GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS-SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCS  562 (667)
Q Consensus       484 ~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~  562 (667)
                      .....+.|+.||+||+++++|..||||+++...... ........+.+.|+......|+.|.+......   +..    .
T Consensus       547 ~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~n~---ss~----~  619 (712)
T KOG0283|consen  547 SSQISASFSSDGKHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAHNP---SSN----L  619 (712)
T ss_pred             CcceeeeEccCCCEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccccc---ccc----C
Confidence            999999999999999999999999999997654322 23344566778999999999999998765321   000    0


Q ss_pred             ccCcCCC-CCCcccCCCcccCCCCCCCCCCCCCCCCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccCCCC
Q 005956          563 QKWDNLE-TAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISAT  641 (667)
Q Consensus       563 ~~w~~~~-~~~~~~~~~~fS~~~~~~~~g~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (667)
                         +..+ .++........++...++.   .+++++||++++.....    .......+++++.+.|+....   ..+++
T Consensus       620 ---p~~~~~~~~~~~~~~~s~~~~~~~---~~~s~t~~e~~~~~s~~----~~~~~~~~~~~~~S~~~~~~~---~~~~~  686 (712)
T KOG0283|consen  620 ---PPLIKAALRPVNEFKLSSPMRSLN---SRGSATWPEEKLLDSPG----ASASSRSSIKFLMSGCQRSSS---SSPHA  686 (712)
T ss_pred             ---CCCcccccCcccccccCCcccccc---ccccccCcccccccccC----cccccccccccccCCCccccc---cccCC
Confidence               1111 0000000011111222222   48999999999876522    122233344777777765222   23689


Q ss_pred             CceEEEecCCCCeEeeeeecCCcccC
Q 005956          642 WGLVIVTAGCDGMIKTFHNYGLPIRL  667 (667)
Q Consensus       642 ~g~vivta~~~G~ir~f~~~~~~~~~  667 (667)
                      ||||||||+|+|+||+|||||||+++
T Consensus       687 wg~vivTs~~~g~Ir~~~n~glp~~~  712 (712)
T KOG0283|consen  687 WGMVIVTSTLDGQIRCFQNYGLPRRV  712 (712)
T ss_pred             CcceeeeccccceEEEEEecCCCCCC
Confidence            99999999999999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-38  Score=309.56  Aligned_cols=319  Identities=22%  Similarity=0.302  Sum_probs=253.7

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ..+...+.||.++|.|++|+|+|++||||+.|.++|+||+.+                                      
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T--------------------------------------  146 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT--------------------------------------  146 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--------------------------------------
Confidence            445667889999999999999999999999999999999986                                      


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE-e-eCCCcEEEEEEeeC----CCCE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPI----DDNY  364 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~-~-~h~~~V~~l~f~p~----d~~~  364 (667)
                             +.|..+.++|..-|.|++|+||| .|++|+.||+|++||..+++++.. + +|...|++++|.|.    ..++
T Consensus       147 -------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~  219 (480)
T KOG0271|consen  147 -------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR  219 (480)
T ss_pred             -------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccc
Confidence                   57789999999999999999999 999999999999999999877643 3 59999999999872    4678


Q ss_pred             EEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956          365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                      |++++.||.|+|||+..++++. ..+|...|+|++|--+| +|++|+.|++|++|+...+.+...       .+.|...|
T Consensus       220 las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~-------lkGHahwv  291 (480)
T KOG0271|consen  220 LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRE-------LKGHAHWV  291 (480)
T ss_pred             eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHh-------hcccchhe
Confidence            9999999999999999988765 78899999999997665 899999999999999988665432       33445677


Q ss_pred             EEEEEc-----------cCC------------------------CeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCC
Q 005956          444 TGIQFS-----------RDE------------------------SQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGS  485 (667)
Q Consensus       444 ~~l~~s-----------p~g------------------------~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~  485 (667)
                      +.++.+           |.+                        +..+++++.|.++.+|+...   ++.+..+  |..-
T Consensus       292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg--Hq~l  369 (480)
T KOG0271|consen  292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG--HQAL  369 (480)
T ss_pred             eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc--hhhh
Confidence            777766           222                        24699999999999999663   3334444  8999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCcc
Q 005956          486 QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQK  564 (667)
Q Consensus       486 v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~  564 (667)
                      |+.+.||||++|||++|-|..|++|+-.+++...... +-..+-.++|+.|.+.|+.+..+..  ++++....-..    
T Consensus       370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT--LKvw~V~tkKl----  443 (480)
T KOG0271|consen  370 VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST--LKVWDVRTKKL----  443 (480)
T ss_pred             eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce--EEEEEeeeeee----
Confidence            9999999999999999999999999999998866543 2333344589998888777665543  33322211100    


Q ss_pred             CcCCCCCCcccCCCcccCCCCCCCCCC
Q 005956          565 WDNLETAPWIRDSERFSLGSWFSNDGP  591 (667)
Q Consensus       565 w~~~~~~~~~~~~~~fS~~~~~~~~g~  591 (667)
                      -..+|.+-..+...+.||++.-.+.|.
T Consensus       444 ~~DLpGh~DEVf~vDwspDG~rV~sgg  470 (480)
T KOG0271|consen  444 KQDLPGHADEVFAVDWSPDGQRVASGG  470 (480)
T ss_pred             cccCCCCCceEEEEEecCCCceeecCC
Confidence            023454555566677888887776554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4e-38  Score=311.91  Aligned_cols=271  Identities=19%  Similarity=0.276  Sum_probs=241.2

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +-+.+|..+.||+|++.||||+.+|.++||++.+                                             .
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~---------------------------------------------~  207 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ---------------------------------------------C  207 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCC---------------------------------------------c
Confidence            7789999999999999999999999999999986                                             2


Q ss_pred             CcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~  375 (667)
                      ..+++|.||+..|.++.|+|.  + .++||+.||++++|++.+..++..+. |...|..++|+| +|++|.+++.|.+-+
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWR  286 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWR  286 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchh
Confidence            457899999999999999997  4 89999999999999999988888774 889999999999 999999999999999


Q ss_pred             EEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          376 IWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       376 iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      +||++++..+ ...+|...|.+++|+|||..+++|+.|..-+|||++++.....   +.+    |..+|.++.|+|+| +
T Consensus       287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~---L~g----H~k~I~~V~fsPNG-y  358 (459)
T KOG0272|consen  287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF---LAG----HIKEILSVAFSPNG-Y  358 (459)
T ss_pred             hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE---ecc----cccceeeEeECCCc-e
Confidence            9999998754 5778999999999999999999999999999999999887653   222    45899999999996 9


Q ss_pred             EEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEE
Q 005956          455 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHF  532 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~f  532 (667)
                      .|++|+.|++++|||++.....+....|..-|+.+.|+| .|.+|+|++.|++++||.-.+..+.... .+...+-++..
T Consensus       359 ~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di  438 (459)
T KOG0272|consen  359 HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI  438 (459)
T ss_pred             EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe
Confidence            999999999999999997777888888999999999998 7899999999999999999998765442 34444555699


Q ss_pred             ccCCcEEEEecC
Q 005956          533 FSEGVSVAVQWP  544 (667)
Q Consensus       533 s~dg~~lav~w~  544 (667)
                      ++||..++.+.-
T Consensus       439 s~d~~~i~t~s~  450 (459)
T KOG0272|consen  439 SPDSQAIATSSF  450 (459)
T ss_pred             ccCCceEEEecc
Confidence            999998887543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.9e-38  Score=309.11  Aligned_cols=251  Identities=22%  Similarity=0.376  Sum_probs=225.1

Q ss_pred             cccccccceeeccccccEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956          208 EFTALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (667)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~v~fspd--g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (667)
                      ..+.....++|.+|++.|.++.|+|.  +.-||||+.||++++|++.+                                
T Consensus       203 ~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--------------------------------  250 (459)
T KOG0272|consen  203 SVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--------------------------------  250 (459)
T ss_pred             ecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC--------------------------------
Confidence            34556778899999999999999997  66999999999999999985                                


Q ss_pred             ceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCC
Q 005956          286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN  363 (667)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~  363 (667)
                                   ..++..+.||...|..++|+|+| +|+|++.|.+-++||+.++..+... +|...|.+++|+| ||.
T Consensus       251 -------------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGS  316 (459)
T KOG0272|consen  251 -------------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGS  316 (459)
T ss_pred             -------------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCc
Confidence                         46789999999999999999999 9999999999999999998766555 5999999999999 999


Q ss_pred             EEEEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          364 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      ++++|+.|..-+|||+++++.+ .+.+|...|.+|+|+|+|..+|+|+.|++++|||++...... .      ...|.+-
T Consensus       317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly-~------ipAH~nl  389 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY-T------IPAHSNL  389 (459)
T ss_pred             eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce-e------cccccch
Confidence            9999999999999999999866 477899999999999999999999999999999999776632 2      3344588


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      |+.+.|+|+.+.+|++++.|++++||........-...+|.+.|.++++++|+.+|+|++.|.++++|.
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999997779999999999999999886555445555999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-35  Score=281.23  Aligned_cols=284  Identities=20%  Similarity=0.344  Sum_probs=237.9

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc-----------eeeeeeCCCCCccc-cCCCCeEEecc
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA-----------ASCKSFTDDGGFGS-NAKEGKIKFGK  280 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~  280 (667)
                      ...++|++|.+.|.+|.|++|.++|++++.||.+.|||.-+..           +....|.|.+.+++ +.-+.+..++.
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            3447899999999999999999999999999999999987643           23456777776544 33444444443


Q ss_pred             cCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEee
Q 005956          281 KKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP  359 (667)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p  359 (667)
                      .......         .......++.+|++.+.++.|-+|+.|+|++.|.+..+||+++++.+..|. |...|.++.+.|
T Consensus       126 ls~~d~~---------g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  126 LSTRDAE---------GNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             ccccccc---------ccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence            3321110         011335678999999999999999999999999999999999999999995 999999999999


Q ss_pred             CCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956          360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (667)
Q Consensus       360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~  438 (667)
                      .+++.|++|+-|++.++||++.+..++ +.+|...|++++|.|+|.-|++|+.|+++++||++..+.... +.    ...
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-ys----~~~  271 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-YS----HDS  271 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-ec----cCc
Confidence            999999999999999999999998775 788999999999999999999999999999999997655432 11    222


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      ...+|++++|+..| ++|++|..|..+.+||.-+....-...+|...|.++..+|||.-|++||.|..++||.
T Consensus       272 ~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  272 IICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            34789999999996 8999999999999999876665555566999999999999999999999999999994

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-36  Score=291.37  Aligned_cols=278  Identities=21%  Similarity=0.351  Sum_probs=231.6

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ....+.++|..-|.|++|+|||+.||+|+.||.|++||..++.                                     
T Consensus       148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-------------------------------------  190 (480)
T KOG0271|consen  148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-------------------------------------  190 (480)
T ss_pred             CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-------------------------------------
Confidence            3456788999999999999999999999999999999988742                                     


Q ss_pred             CcccccCCcceeeeccccceEEEEecC-----CC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSN-----SN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~-----~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l  365 (667)
                             .....|.||...|++|+|.|     .. +|++++.||+|+|||+..+.++..+ +|+.+|+|+.|-  ...+|
T Consensus       191 -------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gli  261 (480)
T KOG0271|consen  191 -------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLI  261 (480)
T ss_pred             -------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceE
Confidence                   34567889999999999976     23 8999999999999999999998887 599999999997  36799


Q ss_pred             EEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEe-----------eCCC-------------------------EEEE
Q 005956          366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----------PDGK-------------------------GFIV  408 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~s-----------pdg~-------------------------~l~~  408 (667)
                      ++|+.|++|++|+...|.+.. +.+|...|+.++.+           |.++                         .+++
T Consensus       262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            999999999999999988765 77888888888766           3344                         4999


Q ss_pred             EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEE
Q 005956          409 GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMS  488 (667)
Q Consensus       409 gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~  488 (667)
                      |+.|.++.+|+-...+.....      ...|..-|+.+.|+||+ .+|++++.|..|++||..+........+|-..|..
T Consensus       342 gsDd~tlflW~p~~~kkpi~r------mtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq  414 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITR------MTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ  414 (480)
T ss_pred             ecCCceEEEecccccccchhh------hhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhhhhhhccceeEE
Confidence            999999999997765544332      23345789999999996 99999999999999998865443333348999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEec
Q 005956          489 ASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       489 v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      ++|+.|.++|++||.|.+++||++.+.+...-. .....+.++.|+|||+.+|..-
T Consensus       415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg  470 (480)
T KOG0271|consen  415 VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG  470 (480)
T ss_pred             EEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence            999999999999999999999999988765433 3445556668888888776543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=266.84  Aligned_cols=283  Identities=17%  Similarity=0.267  Sum_probs=236.5

Q ss_pred             cceeeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      +.-+|++|++.|+.++..+. ...|++++.|.++.+|++...+..                                   
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-----------------------------------   51 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-----------------------------------   51 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-----------------------------------
Confidence            44578899999999999987 458999999999999999862110                                   


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEec
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                           -+.+++.|.||...|..+..++++ +.++++.|+++++||+.+++..+.| +|...|.+++|+| |...+++|+.
T Consensus        52 -----~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSr  125 (315)
T KOG0279|consen   52 -----YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSR  125 (315)
T ss_pred             -----cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCC
Confidence                 256788999999999999999999 9999999999999999999888887 5999999999999 9999999999


Q ss_pred             CCeEEEEecCCCeEEEeccc--CCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          371 DGKVRIWGVCEKRVVDWADV--RDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~~~~~--~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      |.+|++|++.+.........  .+.|+|++|+|+  ..+|+.++.|+++++||+++.++...       ...|.+.++.+
T Consensus       126 DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~-------~~gh~~~v~t~  198 (315)
T KOG0279|consen  126 DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT-------FIGHSGYVNTV  198 (315)
T ss_pred             cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc-------cccccccEEEE
Confidence            99999999998887765554  789999999997  67899999999999999998776543       33456899999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc---
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK---  523 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~---  523 (667)
                      +++||| .+.++|+.||.+.+||++...+.+.. .+...|.+++|+|+.-.|+.+. +..|+|||+++.........   
T Consensus       199 ~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~  275 (315)
T KOG0279|consen  199 TVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGI  275 (315)
T ss_pred             EECCCC-CEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccc
Confidence            999997 89999999999999999987775554 4889999999999876666554 55699999998866433221   


Q ss_pred             -------cCccceeEEccCCcEEEEecCCCC
Q 005956          524 -------NSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       524 -------~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                             ...-..++|++||+.|-..+....
T Consensus       276 g~s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  276 GPSSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             ccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence                   122234788888888888777654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.9e-33  Score=259.85  Aligned_cols=269  Identities=19%  Similarity=0.333  Sum_probs=227.6

Q ss_pred             CEEEEEECCCcEEEEEcCCCceee-----------eeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          235 RYLASGGEDGVVRIWHVTSVAASC-----------KSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       235 ~~Latgs~Dg~I~vWdv~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      -+|+|+|.|-+||+|...++.+..           +..+++...++......+++++..++.             ..|+.
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~n-------------p~Pv~   77 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNN-------------PNPVA   77 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCC-------------CCcee
Confidence            489999999999999988875543           445566666667777777777765543             35899


Q ss_pred             eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      ++.+|+..|+++.|..+| .+++|+.||+++|||++...+.+.+.|..+|+++..+| +...|++|..+|.|++||+...
T Consensus        78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCC
Confidence            999999999999999999 99999999999999999999999999999999999999 8889999999999999999987


Q ss_pred             eEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          383 RVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       383 ~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                      ....  .......|.++...|||..++.+...|++++|++-+........ ...+...|.+.|..+.++|++ ++|++++
T Consensus       157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~-P~~k~~ah~~~il~C~lSPd~-k~lat~s  234 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE-PVHKFQAHNGHILRCLLSPDV-KYLATCS  234 (311)
T ss_pred             ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce-EhhheecccceEEEEEECCCC-cEEEeec
Confidence            6543  33445679999999999999999999999999998755433333 333466788999999999995 9999999


Q ss_pred             CCCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          461 EDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       461 ~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      .|.+++||+..+. ........|...+..++||.||.||++|+.|+.+++|++..++...
T Consensus       235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence            9999999998865 3344445588899999999999999999999999999999988543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.4e-34  Score=281.27  Aligned_cols=355  Identities=20%  Similarity=0.350  Sum_probs=280.5

Q ss_pred             cccchhhhhhcCCCCCCCCcchhhhHhHHHHHHhhhcccchhhccccCCCCCCCCCcchhHHhhccccccccccccccee
Q 005956          138 NGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQE  217 (667)
Q Consensus       138 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  217 (667)
                      +....++.+|+..++++.++|++|++-++++.+..|....--.+..           ..+...+..+....-.+.+..|.
T Consensus       151 n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsl-----------dsvsll~Dh~c~~~qip~qt~qi  219 (519)
T KOG0293|consen  151 NERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSL-----------DSVSLLSDHFCGRLQIPSQTWQI  219 (519)
T ss_pred             hhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhccc-----------chhhhhhhcccCcccCCchhhhh
Confidence            4446678999999999999999999999999988876432111110           11222223232223345667889


Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      |+.|++.||-+.||++|+|||||+.|.+..||++....                                          
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------------------------  257 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------------------------  257 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------------------------
Confidence            99999999999999999999999999999999987411                                          


Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCC--CcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                      .-+..+++.||..+|..+.||||. +|++|+.|..+.+||+.+|.+...+.+.  ..+.+++|.| |+..|++|+.|+++
T Consensus       258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i  336 (519)
T KOG0293|consen  258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTI  336 (519)
T ss_pred             ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcE
Confidence            124478899999999999999999 9999999999999999999999999755  7899999999 99999999999999


Q ss_pred             EEEecCCCeEEEecccC-CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          375 RIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~-~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      ..||+.......|.+.+ ..|.+++.++||+++++.+.|..|++|+..+.....        ......+|++++.+.++ 
T Consensus       337 ~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~--------lise~~~its~~iS~d~-  407 (519)
T KOG0293|consen  337 IMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG--------LISEEQPITSFSISKDG-  407 (519)
T ss_pred             EEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc--------cccccCceeEEEEcCCC-
Confidence            99999988877776655 448999999999999999999999999987643321        11123789999999996 


Q ss_pred             eEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccce
Q 005956          454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSC  529 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~  529 (667)
                      +++++.=.+..|++||+.  ..+++|.++.....+..-||.- +.++|++||+|+.||||+..+++...... +...+. 
T Consensus       408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN-  486 (519)
T KOG0293|consen  408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN-  486 (519)
T ss_pred             cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee-
Confidence            888888899999999987  4567788877777888888854 45899999999999999999998755432 223333 


Q ss_pred             eEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCC
Q 005956          530 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL  568 (667)
Q Consensus       530 ~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~  568 (667)
                                +++|++..+.  .+++.+.+++.++|...
T Consensus       487 ----------cVswNP~~p~--m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  487 ----------CVSWNPADPE--MFASASDDGTIRIWGPS  513 (519)
T ss_pred             ----------EEecCCCCHH--HhhccCCCCeEEEecCC
Confidence                      4556655433  46666777778888653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-34  Score=278.98  Aligned_cols=364  Identities=19%  Similarity=0.302  Sum_probs=284.3

Q ss_pred             cccccCCceEEeecccc--cccchhhhhhcC-CCCCCCCc--chhhhHhHHHHHHhhhccc--chhhccccCCCCCCCCC
Q 005956          121 LEQDQMNECVVTLEGES--NGFSQSVDKFEN-PFPECKGV--NIKKVKKLWKRIISMKKRN--VETCMSEKRKPNSEKPK  193 (667)
Q Consensus       121 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  193 (667)
                      +.++|.++....+-.+.  +|++.+-+.+.+ ....+.+.  +...+++.|..+.+++|+-  ++...++..+.......
T Consensus         5 ~~~~~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~~~~~~~g~ll~kkwtSv~rlqKki~~Les~l~~~~~el~~g~p   84 (406)
T KOG0295|consen    5 LSERQRDEINMAIADLSGSNGYSESDRIFHKEASLATEMRKKDGGLLEKKWTSVDRLQKKIRELESKLDETGDELIAGDP   84 (406)
T ss_pred             ecccchHHHHHHHHhhhccccccccceeEeecCCCcccccccccceeeccccccchhHHHHHHHHhhhcccccccccCCC
Confidence            34556666555555554  555444444433 22333333  4467788999999888753  33333333322111111


Q ss_pred             cchhHHhhcccccccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCC
Q 005956          194 ANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE  273 (667)
Q Consensus       194 ~~~~~~~~~~k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~  273 (667)
                           ....+....+.+++.+.+.+.+|..+|+.+-|+|+-..++++++|++|++||..++                   
T Consensus        85 -----t~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------------------  140 (406)
T KOG0295|consen   85 -----TGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG-------------------  140 (406)
T ss_pred             -----CcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch-------------------
Confidence                 11223344477788888999999999999999999999999999999999999873                   


Q ss_pred             CeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-CeEeEEe-eCCC
Q 005956          274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHN  350 (667)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-~~~~~~~-~h~~  350 (667)
                                                .....++||+..|.++.|+..| +|++++.|-.+++||.++ .+|++.. +|..
T Consensus       141 --------------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h  194 (406)
T KOG0295|consen  141 --------------------------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH  194 (406)
T ss_pred             --------------------------hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence                                      3467889999999999999999 999999999999999987 4555544 5999


Q ss_pred             cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee
Q 005956          351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  429 (667)
Q Consensus       351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~  429 (667)
                      .|.++.|-| .++++++++.|.+|+.|++.++-.+. +.+|...|..+..+.||..+++++.|.++++|-+.+.+.... 
T Consensus       195 ~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~-  272 (406)
T KOG0295|consen  195 GVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE-  272 (406)
T ss_pred             ceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-
Confidence            999999999 88999999999999999999998775 778889999999999999999999999999999998755432 


Q ss_pred             EeeccccCcCCCCeEEEEEccC--------------CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC
Q 005956          430 VDFHDRKKTSGNKITGIQFSRD--------------ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  495 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~--------------g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg  495 (667)
                            ...|..+|.+++|.|.              +..++.+++.|++|++||+..+.+.+...+|...|..++|+|.|
T Consensus       273 ------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G  346 (406)
T KOG0295|consen  273 ------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG  346 (406)
T ss_pred             ------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence                  2334577888888664              23699999999999999999988888888899999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEe
Q 005956          496 KHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       496 ~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~  542 (667)
                      +||+++.+|++++|||+++..+.... .......++.|+.+--++..+
T Consensus       347 kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  347 KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTG  394 (406)
T ss_pred             eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEec
Confidence            99999999999999999998876553 345566777888766655543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.3e-33  Score=266.18  Aligned_cols=278  Identities=24%  Similarity=0.401  Sum_probs=239.1

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .+.+|++.|+.++|+|+|.+|||||.|..|.+|++..                                           
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-------------------------------------------   78 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-------------------------------------------   78 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-------------------------------------------
Confidence            4679999999999999999999999999999999874                                           


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                       ..+....+++|.+.|..+.|.+++ .+++++.|++|+.||+++|++++.++ |..-|..+.-...+..++.+++.|+++
T Consensus        79 -dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~  157 (338)
T KOG0265|consen   79 -DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL  157 (338)
T ss_pred             -cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence             234466778999999999999999 99999999999999999999999986 888888888655566788999999999


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      ++||+++...++....+..+++++|...+..+.+|+-|+.|++||++.+.....       ...|..+|+.+..+|+| .
T Consensus       158 kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-------lsGh~DtIt~lsls~~g-s  229 (338)
T KOG0265|consen  158 KLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-------LSGHADTITGLSLSRYG-S  229 (338)
T ss_pred             EEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE-------eecccCceeeEEeccCC-C
Confidence            999999999998888889999999999999999999999999999988776432       33446899999999996 8


Q ss_pred             EEEEEeCCCcEEEEECC------cceeeEEeCCCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-ccccccC
Q 005956          455 RIMITSEDSKLRILDGV------DVIHKFKGLPKS--GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP-SSKQKNS  525 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~------~~~~~~~~~~~~--~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~-~~~~~~~  525 (667)
                      ++++-+.|.++++||.+      .++..+.++.|.  .....++|+|++.++.+|+.|..+++||....... .......
T Consensus       230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g  309 (338)
T KOG0265|consen  230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG  309 (338)
T ss_pred             ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce
Confidence            99999999999999976      346777776554  34567899999999999999999999999885543 3345556


Q ss_pred             ccceeEEccCCcEEEEecCCC
Q 005956          526 VRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       526 ~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .+.++.|+|...++..+.++.
T Consensus       310 svn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  310 SVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             eEEEeeecCCCcEEEEeccCc
Confidence            777889999888887765544

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-32  Score=259.61  Aligned_cols=246  Identities=20%  Similarity=0.385  Sum_probs=206.7

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+.++||+..|..+..++||++.++++.|+++++||+.+                                       
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~---------------------------------------   94 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT---------------------------------------   94 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC---------------------------------------
Confidence            34567889999999999999999999999999999999996                                       


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCC-CCEEEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID-DNYFISG  368 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d-~~~l~sg  368 (667)
                            +++.+.|.||...|.+++|++|+ .+++|+.|++|++|++..........  +.+.|.|+.|+|+. ..+|+++
T Consensus        95 ------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~  168 (315)
T KOG0279|consen   95 ------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA  168 (315)
T ss_pred             ------CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence                  35578899999999999999999 99999999999999998655444444  37899999999943 7799999


Q ss_pred             ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      +.|++|++||+++.++.. +.+|.+.++.++++|||...+.|+.||.+.+||++..+...        ...+...|.+++
T Consensus       169 s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly--------sl~a~~~v~sl~  240 (315)
T KOG0279|consen  169 SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY--------SLEAFDIVNSLC  240 (315)
T ss_pred             cCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE--------eccCCCeEeeEE
Confidence            999999999999988775 77899999999999999999999999999999999877632        222347899999


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCccee------eEEeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDVIH------KFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~------~~~~~---~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      |+|+  .+.++...+..|+|||+.....      .+.+.   .......+++|++||..|++|-.|+.|++|.+.
T Consensus       241 fspn--rywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  241 FSPN--RYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ecCC--ceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            9998  4666666667799999763221      11121   113345788999999999999999999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.8e-32  Score=290.23  Aligned_cols=283  Identities=24%  Similarity=0.348  Sum_probs=223.8

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      +..++......+ ..++|..|++|+..||.|-.|..|++|.+.......+.   +...+        ...++......  
T Consensus       367 pSic~YT~~nt~-~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk---~~~~l--------~~~d~~sad~~--  432 (707)
T KOG0263|consen  367 PSICMYTFHNTY-QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLK---DASDL--------SNIDTESADVD--  432 (707)
T ss_pred             CcEEEEEEEEcC-CcceeEeecCCcchhhccccccEEEEEecchhhhcccc---chhhh--------ccccccccchh--
Confidence            444444444444 45999999999999999999999999999842211110   00000        00000000000  


Q ss_pred             cCCCccc-ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEE
Q 005956          290 IPDEVFQ-IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       290 ~~~~~~~-~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~  366 (667)
                        ....+ .......++.||.++|..+.|+|+. +|++|+.|++||+|.+.+..++..+. |..+|++++|+| .|-||+
T Consensus       433 --~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFa  509 (707)
T KOG0263|consen  433 --VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFA  509 (707)
T ss_pred             --hhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEE
Confidence              00111 1223456689999999999999999 99999999999999999999998885 999999999999 899999


Q ss_pred             EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      +++.|++.++|........+ +.+|-..|.|+.|+|+..++++|+.|.++++||+.++.....   +    ..|.++|++
T Consensus       510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi---F----~GH~~~V~a  582 (707)
T KOG0263|consen  510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI---F----TGHKGPVTA  582 (707)
T ss_pred             ecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE---e----cCCCCceEE
Confidence            99999999999998877765 677889999999999999999999999999999998876432   2    335699999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      ++|+|+| .+|++|+.|+.|.|||+...........|.+.|.++.||.+|..||+||.|.+|++||+.....
T Consensus       583 l~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  583 LAFSPCG-RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEEcCCC-ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            9999996 9999999999999999886444444444799999999999999999999999999999876543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.9e-33  Score=280.31  Aligned_cols=278  Identities=22%  Similarity=0.424  Sum_probs=235.7

Q ss_pred             cccccccceeeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCc
Q 005956          208 EFTALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  286 (667)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (667)
                      .+.+-.+..++.+|+..|+++.|.| .+.+|++|+.|+.|+||++..                                 
T Consensus       200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------------------------------  246 (503)
T KOG0282|consen  200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------------------------------  246 (503)
T ss_pred             eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------------
Confidence            3445566788999999999999999 899999999999999999975                                 


Q ss_pred             eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEE
Q 005956          287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l  365 (667)
                                 ..+.+++|.||..+|.+++|+++| .+++++.|++|++||+++|+++..|.....++|+.|+|.+.+.|
T Consensus       247 -----------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~f  315 (503)
T KOG0282|consen  247 -----------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIF  315 (503)
T ss_pred             -----------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEE
Confidence                       356789999999999999999999 99999999999999999999999999999999999999555999


Q ss_pred             EEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      ++|+.|+.|+.||++++++++ +..|-+.|..+.|-++|+.+++.+.|++++||+.+..-.........      .....
T Consensus       316 l~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~------~hsmP  389 (503)
T KOG0282|consen  316 LVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE------MHTMP  389 (503)
T ss_pred             EEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh------hccCc
Confidence            999999999999999999886 56677899999999999999999999999999998655433222211      24567


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECC-----cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGV-----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~-----~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      ++..+|++ .++++-+.|+.|.++.+.     +...+|+++.-.+.-..+.|||||.+|++|+.||.+++||.++.+...
T Consensus       390 ~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~  468 (503)
T KOG0282|consen  390 CLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS  468 (503)
T ss_pred             ceecCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh
Confidence            89999996 899999999999999865     345677887777888899999999999999999999999999877644


Q ss_pred             cccc-cCccceeEEccCC
Q 005956          520 SKQK-NSVRSCEHFFSEG  536 (667)
Q Consensus       520 ~~~~-~~~~~~~~fs~dg  536 (667)
                      .... ......+.|+|..
T Consensus       469 ~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  469 KLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             ccccCCcceEEEEecCCC
Confidence            4322 2333334566543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.1e-31  Score=267.44  Aligned_cols=270  Identities=21%  Similarity=0.310  Sum_probs=234.5

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      +..|++++|+.+|.+||||+.||.++||+...                                              ..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----------------------------------------------~l  268 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG----------------------------------------------NL  268 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc----------------------------------------------hh
Confidence            35799999999999999999999999999873                                              45


Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      +.+|..|.++|.+|.|+..| +|++++.|+++.+||..++...+.|. |..+-..+.|-  +...|++++.|+.|+++-+
T Consensus       269 ~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv  346 (524)
T KOG0273|consen  269 ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKV  346 (524)
T ss_pred             hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEe
Confidence            77888999999999999999 99999999999999999999999997 66665788997  4778999999999999999


Q ss_pred             CCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC-----
Q 005956          380 CEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-----  453 (667)
Q Consensus       380 ~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~-----  453 (667)
                      ....++ .+.+|++.|.++.|+|.|..|++++.|++++||.........       ....|...|..+.|+|.|+     
T Consensus       347 ~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~-------~l~~Hskei~t~~wsp~g~v~~n~  419 (524)
T KOG0273|consen  347 GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH-------DLQAHSKEIYTIKWSPTGPVTSNP  419 (524)
T ss_pred             cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-------hhhhhccceeeEeecCCCCccCCC
Confidence            887765 577899999999999999999999999999999976544321       1334457899999998753     


Q ss_pred             ---eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCcccee
Q 005956          454 ---QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  530 (667)
Q Consensus       454 ---~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~  530 (667)
                         ..+++++.|++|++||+...++......|..+|.+++|+|+|+|+|+|+.||.|.||+.++++..........+..+
T Consensus       420 ~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel  499 (524)
T KOG0273|consen  420 NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFEL  499 (524)
T ss_pred             cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEE
Confidence               57999999999999999988777777779999999999999999999999999999999999876666666666778


Q ss_pred             EEccCCcEEEEecCCC
Q 005956          531 HFFSEGVSVAVQWPGI  546 (667)
Q Consensus       531 ~fs~dg~~lav~w~~~  546 (667)
                      +|+.+|..|+++.+..
T Consensus       500 ~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  500 CWNAAGDKLGACASDG  515 (524)
T ss_pred             EEcCCCCEEEEEecCC
Confidence            8998888888876654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-31  Score=243.30  Aligned_cols=270  Identities=25%  Similarity=0.446  Sum_probs=229.8

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.|..|+++|.++.|+-||+|.+|+|.|++|++|+...                                         
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-----------------------------------------   48 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-----------------------------------------   48 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc-----------------------------------------
Confidence            456789999999999999999999999999999999875                                         


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                          +..++++.||...|.+++.+.|+ .|++|+.|+.|.+||+.+|+.++.+. |...|..++|+. +...+++|+.|.
T Consensus        49 ----g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~  123 (307)
T KOG0316|consen   49 ----GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDS  123 (307)
T ss_pred             ----cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccc
Confidence                45689999999999999999888 99999999999999999999999996 999999999999 899999999999


Q ss_pred             eEEEEecCCCe--EEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          373 KVRIWGVCEKR--VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       373 ~v~iwdl~~~~--~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      ++++||.+...  +++ +....+.|.++...  +..|++|+.||+++.||++.+.+....         .+.+|+++.|+
T Consensus       124 s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy---------~g~pit~vs~s  192 (307)
T KOG0316|consen  124 SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY---------FGHPITSVSFS  192 (307)
T ss_pred             eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh---------cCCcceeEEec
Confidence            99999998765  343 44567788888764  578999999999999999988764331         13789999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cccC
Q 005956          450 RDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QKNS  525 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~~~  525 (667)
                      +++ +..++++-|+++++.|-.  +....++++.+...-..++++....++++|++||.|++||+.+.......  +...
T Consensus       193 ~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v  271 (307)
T KOG0316|consen  193 KDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV  271 (307)
T ss_pred             CCC-CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence            996 899999999999999955  67788889877777788899999999999999999999999887654432  2233


Q ss_pred             ccceeEEccCCcEEEEe
Q 005956          526 VRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       526 ~~~~~~fs~dg~~lav~  542 (667)
                      +...+.|+|.-.-+.++
T Consensus       272 ~v~dl~~hp~~~~f~~A  288 (307)
T KOG0316|consen  272 IVTDLSCHPTMDDFITA  288 (307)
T ss_pred             eEEeeecccCccceeEe
Confidence            35667777765544443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-31  Score=284.77  Aligned_cols=209  Identities=30%  Similarity=0.541  Sum_probs=190.2

Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      ......+|.+|.++|..+.|+|+.++|+++++|++||+|.+.+                                     
T Consensus       440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-------------------------------------  482 (707)
T KOG0263|consen  440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-------------------------------------  482 (707)
T ss_pred             CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeeccc-------------------------------------
Confidence            3445567899999999999999999999999999999999986                                     


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                              ...+..+.||..+|+++.|+|.| ++||+|.|++.++|.....++++.|. |-..|.|+.|+| +.+|+++|
T Consensus       483 --------~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTG  553 (707)
T KOG0263|consen  483 --------WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATG  553 (707)
T ss_pred             --------ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccC
Confidence                    34467788999999999999999 99999999999999999999999985 999999999999 99999999


Q ss_pred             ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      |.|.+||+||+.+|..++ +.+|.++|++++|+|+|++|++|+.||.|.+||+.++.+...       ...|.+.|.++.
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~-------l~~Ht~ti~Sls  626 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ-------LKGHTGTIYSLS  626 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh-------hhcccCceeEEE
Confidence            999999999999998876 778999999999999999999999999999999998776543       333458999999


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCcc
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDV  473 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~  473 (667)
                      |+.+| ..|++++.|+.|++||+.+.
T Consensus       627 FS~dg-~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  627 FSRDG-NVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EecCC-CEEEecCCCCeEEEEEchhh
Confidence            99996 89999999999999997643

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=7.3e-31  Score=254.99  Aligned_cols=310  Identities=17%  Similarity=0.296  Sum_probs=240.6

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      .+..+.+.|++|.+.|.|+++.|-..+|+||+.|++|+|||+.+                                    
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat------------------------------------  182 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT------------------------------------  182 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc------------------------------------
Confidence            34456688999999999999999999999999999999999997                                    


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEE
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~s  367 (667)
                               ++...++.||...|..+++++-. +|++++.|+.|+.||++.++.++.+ +|-..|.|++.+| .-+.|++
T Consensus       183 ---------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t  252 (460)
T KOG0285|consen  183 ---------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVT  252 (460)
T ss_pred             ---------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEe
Confidence                     34567889999999999999988 9999999999999999999999887 5999999999999 8899999


Q ss_pred             EecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          368 GSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      |+.|.++++||+++...+ .+.+|...|..+.+.|-...+++|+.|++|++||++.++....   +    ..|...+.++
T Consensus       253 ~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t---l----t~hkksvral  325 (460)
T KOG0285|consen  253 GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT---L----THHKKSVRAL  325 (460)
T ss_pred             cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe---e----ecccceeeEE
Confidence            999999999999998766 4778999999999999888999999999999999998876443   1    1223679999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCc
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV  526 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~  526 (667)
                      +.+|.. ..+++++.| .|+-|++...........|...|++++...|| ++++|+++|.+.+||.+++..-...+..  
T Consensus       326 ~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~--  400 (460)
T KOG0285|consen  326 CLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI--  400 (460)
T ss_pred             ecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccc--
Confidence            999984 555555555 69999987544333334488899999997765 8889999999999999998653332211  


Q ss_pred             cceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcc
Q 005956          527 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERF  580 (667)
Q Consensus       527 ~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f  580 (667)
                      +..-..-....++|.++...+..   +..+..+.+...|.+....+...+|..+
T Consensus       401 vqpGSl~sEagI~as~fDktg~r---lit~eadKtIk~~keDe~aT~EthPl~w  451 (460)
T KOG0285|consen  401 VQPGSLESEAGIFASCFDKTGSR---LITGEADKTIKMYKEDEHATEETHPLNW  451 (460)
T ss_pred             ccCCccccccceeEEeecccCce---EEeccCCcceEEEecccccCcccCCcCC
Confidence            11111122233445555444433   2233445556667665555554555444

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=276.52  Aligned_cols=280  Identities=31%  Similarity=0.499  Sum_probs=227.5

Q ss_pred             ceeeccc-cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          215 SQEIQAH-KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       215 ~~~l~~H-~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      .+.+..| ...|.++.|+|+|++|++++.|+.+++|+......                                     
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------------------  193 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------------------  193 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence            4555454 88999999999999999999999999999864210                                     


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEec-CCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEec
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~-~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                            .....+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++ +|..+|++++|+| .++++++|+.
T Consensus       194 ------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~  266 (456)
T KOG0266|consen  194 ------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSD  266 (456)
T ss_pred             ------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecC
Confidence                  1355568999999999999999 9999999999999999 556888888 4999999999999 7799999999


Q ss_pred             CCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce-eeeEeeccccCcCCCCeEEEEE
Q 005956          371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      |++|+|||++++++.. +..|.+.|++++|+++|+.|++++.||.|++||+.++... ...+  .+. .... +++.++|
T Consensus       267 D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--~~~-~~~~-~~~~~~f  342 (456)
T KOG0266|consen  267 DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL--SGA-ENSA-PVTSVQF  342 (456)
T ss_pred             CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc--cCC-CCCC-ceeEEEE
Confidence            9999999999988775 7788999999999999999999999999999999988743 1111  111 1112 7999999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cc
Q 005956          449 SRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QK  523 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~  523 (667)
                      +|++ .++++++.|+.+++||+..  ....+.++... ..+.+...++.++++++|+.|+.|++|++.++......  +.
T Consensus       343 sp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~  421 (456)
T KOG0266|consen  343 SPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS  421 (456)
T ss_pred             CCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC
Confidence            9996 8999999999999999884  44455554222 24455566889999999999999999999987654432  32


Q ss_pred             cCccceeEEccCCcEEEEec
Q 005956          524 NSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       524 ~~~~~~~~fs~dg~~lav~w  543 (667)
                      ........++|...+++...
T Consensus       422 ~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  422 KAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             CCceeccccCCCcCeeeecC
Confidence            45555668888777777743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=7e-30  Score=268.99  Aligned_cols=248  Identities=22%  Similarity=0.429  Sum_probs=215.6

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      ..++|...|+++++||||+++|||++||.|+|||..++                                          
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------------------------------------------  382 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG------------------------------------------  382 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc------------------------------------------
Confidence            34799999999999999999999999999999999863                                          


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCc--EEEEEEeeCCCCEEEEEecCCe
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~--V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                         -+..+|..|+..|+.++|+..+ .+++++.||+|+.||+...++.++|..+.+  ..|++..| .|.+++.|+.|..
T Consensus       383 ---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F  458 (893)
T KOG0291|consen  383 ---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSF  458 (893)
T ss_pred             ---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceE
Confidence               4578899999999999999999 999999999999999999999999975554  46888888 8999999998864


Q ss_pred             -EEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          374 -VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       374 -v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                       |++|++.+|+++. +.+|.++|.+++|+|+|..|++|+.|.+|++||+-......+.+...       ..++.++|.|+
T Consensus       459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~-------sdvl~vsfrPd  531 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR-------SDVLAVSFRPD  531 (893)
T ss_pred             EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec-------cceeEEEEcCC
Confidence             9999999999987 67899999999999999999999999999999998776555555443       57999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEe--------------------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKG--------------------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~--------------------~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      | ..|++++-||.|.+||.....+....                    .......+.+++|+||.+|++||+.+.|+||+
T Consensus       532 G-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  532 G-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             C-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence            7 89999999999999997644333111                    12346789999999999999999999999999


Q ss_pred             cCCCCcc
Q 005956          512 YDELCFP  518 (667)
Q Consensus       512 ~~~~~~~  518 (667)
                      +.++-..
T Consensus       611 v~~~vll  617 (893)
T KOG0291|consen  611 VPEGVLL  617 (893)
T ss_pred             Cchhhee
Confidence            9987543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=8.3e-29  Score=251.70  Aligned_cols=414  Identities=19%  Similarity=0.214  Sum_probs=287.5

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-------------ceeeeeeCCCCCccccCCCCeE
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-------------AASCKSFTDDGGFGSNAKEGKI  276 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~-------------~~~~~~~~~~~~~~~~~~~~~~  276 (667)
                      ..+.....+..|..+++-.+|||.|-|+|+|...|+|||||....             ....+.+..++..++....|+-
T Consensus        47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre  126 (603)
T KOG0318|consen   47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE  126 (603)
T ss_pred             CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence            344456677899999999999999999999999999999998752             2222333344433332222222


Q ss_pred             EecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEE
Q 005956          277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT  353 (667)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~  353 (667)
                      ++       ..++.++     .+..+.++.||...|+++.|-|..  +++||+.|++|.+|+-.-.+....++ |...|.
T Consensus       127 rf-------g~~F~~D-----SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~  194 (603)
T KOG0318|consen  127 RF-------GHVFLWD-----SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN  194 (603)
T ss_pred             ce-------eEEEEec-----CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence            11       1111111     245678899999999999999988  99999999999999977777777775 889999


Q ss_pred             EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-e---cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee
Q 005956          354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  429 (667)
Q Consensus       354 ~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~---~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~  429 (667)
                      |+.|+| |+.+|++++.||++.+||-.+++.+. +   ..|++.|.+++|+||++.+++++.|.+++|||+.++++..+ 
T Consensus       195 ~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t-  272 (603)
T KOG0318|consen  195 CVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST-  272 (603)
T ss_pred             eEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE-
Confidence            999999 99999999999999999999988764 3   36899999999999999999999999999999999876544 


Q ss_pred             EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005956          430 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV  509 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i  509 (667)
                      +.+...   -...-..+.|..+   .|++.+.+|.|.+++...+.......+|...|++++.+|++++|++|+.||.|.-
T Consensus       273 ~~~~~~---v~dqqvG~lWqkd---~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~  346 (603)
T KOG0318|consen  273 WPMGST---VEDQQVGCLWQKD---HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS  346 (603)
T ss_pred             eecCCc---hhceEEEEEEeCC---eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE
Confidence            322221   1244456667643   8999999999999997754433334449999999999999999999999999999


Q ss_pred             EEcCCCCcccc--ccccCccceeEEccCCcEEEEecCCCCccccc------------ccC-------CCCC-----Cc--
Q 005956          510 WNYDELCFPSS--KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS------------LCS-------SSLR-----DC--  561 (667)
Q Consensus       510 Wd~~~~~~~~~--~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~------------~~~-------~~~~-----~~--  561 (667)
                      |+...+..-..  ..+...+..+.-+..+.++.++|.+.-.....            +..       .+..     .+  
T Consensus       347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~  426 (603)
T KOG0318|consen  347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS  426 (603)
T ss_pred             EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence            99998865333  22334444555566678888888765332110            000       0000     00  


Q ss_pred             -CccCc-----CCCCCCcccCCCcccCCCCCCCCCCCCCCCCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCc
Q 005956          562 -SQKWD-----NLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV  635 (667)
Q Consensus       562 -~~~w~-----~~~~~~~~~~~~~fS~~~~~~~~g~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (667)
                       ....+     ...+........+++|+..+.+.|...|+.--  .++.....         ...-+     |......+
T Consensus       427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv--ysl~g~~l---------~ee~~-----~~~h~a~i  490 (603)
T KOG0318|consen  427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV--YSLSGDEL---------KEEAK-----LLEHRAAI  490 (603)
T ss_pred             cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE--EEecCCcc---------cceee-----eecccCCc
Confidence             00000     01122344566788999999999998887211  01111000         00000     00000000


Q ss_pred             -ccCCCCCceEEEecCCCCeEeeee
Q 005956          636 -RAISATWGLVIVTAGCDGMIKTFH  659 (667)
Q Consensus       636 -~~~~~~~g~vivta~~~G~ir~f~  659 (667)
                       ...-+|.|..+|+++..+.|-+|.
T Consensus       491 T~vaySpd~~yla~~Da~rkvv~yd  515 (603)
T KOG0318|consen  491 TDVAYSPDGAYLAAGDASRKVVLYD  515 (603)
T ss_pred             eEEEECCCCcEEEEeccCCcEEEEE
Confidence             145678999999999999999885

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=2.5e-29  Score=255.43  Aligned_cols=259  Identities=24%  Similarity=0.388  Sum_probs=210.7

Q ss_pred             cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      +-+++....+++.|..-|+|+.|+|||.++||++.||+|.|||=.+++                                
T Consensus       176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge--------------------------------  223 (603)
T KOG0318|consen  176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--------------------------------  223 (603)
T ss_pred             eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--------------------------------
Confidence            446667777889999999999999999999999999999999987643                                


Q ss_pred             eecCCCcccccCCcceeee---ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE------------------
Q 005956          288 VVIPDEVFQIEESPLQELH---GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV------------------  345 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~---gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~------------------  345 (667)
                                   .+.++.   +|.+.|.+|+|+||+ .++|++.|++++|||+.+.+++++                  
T Consensus       224 -------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk  290 (603)
T KOG0318|consen  224 -------------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK  290 (603)
T ss_pred             -------------EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC
Confidence                         234444   899999999999999 999999999999999876654432                  


Q ss_pred             --------------------------eeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe------------
Q 005956          346 --------------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW------------  387 (667)
Q Consensus       346 --------------------------~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~------------  387 (667)
                                                .+|...|+++..+| ++++|++|+.||.|.-||..++..-++            
T Consensus       291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~  369 (603)
T KOG0318|consen  291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGM  369 (603)
T ss_pred             CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEE
Confidence                                      13778899999999 899999999999999998754321100            


Q ss_pred             cc----------------------------------------------------------------------cCCceEEE
Q 005956          388 AD----------------------------------------------------------------------VRDVISAI  397 (667)
Q Consensus       388 ~~----------------------------------------------------------------------~~~~v~~v  397 (667)
                      ..                                                                      ......++
T Consensus       370 ~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v  449 (603)
T KOG0318|consen  370 AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV  449 (603)
T ss_pred             eecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence            00                                                                      00115678


Q ss_pred             EEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeE
Q 005956          398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF  477 (667)
Q Consensus       398 ~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~  477 (667)
                      +++|+++.+++|+.||.+++|.+....+..+..     ...|.++|++++|+||+ .+|+++...+.+.+||........
T Consensus       450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-----~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~~  523 (603)
T KOG0318|consen  450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-----LLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREVKT  523 (603)
T ss_pred             EEcCCCCEEEEecccceEEEEEecCCcccceee-----eecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCceec
Confidence            899999999999999999999999876543312     23345899999999996 899999999999999987433222


Q ss_pred             E-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956          478 K-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       478 ~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      . ..-|...|.+++|+|+.+++|+|+.|-.|.||+++.+...
T Consensus       524 ~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  524 NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence            2 2238999999999999999999999999999999987654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.1e-29  Score=235.16  Aligned_cols=274  Identities=23%  Similarity=0.418  Sum_probs=217.4

Q ss_pred             cccceeeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCC-cee--------------eeeeCCCCCccc-cCCCC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSV-AAS--------------CKSFTDDGGFGS-NAKEG  274 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~-~~~--------------~~~~~~~~~~~~-~~~~~  274 (667)
                      +-..+.+++|++.|+.++|+|- |..|||||.|+.|+||+...+ ...              .+.+.|.+++++ +..+.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4456789999999999999998 899999999999999999842 122              234556665443 34444


Q ss_pred             eEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC---eEeEEee-CC
Q 005956          275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVFD-HH  349 (667)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~---~~~~~~~-h~  349 (667)
                      ...++.+...             +.+.+.++.||...|.+++|+++| +||+|+.|+.|-||.+..+   +|..+++ |.
T Consensus        84 t~~Iw~k~~~-------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   84 TVVIWKKEDG-------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT  150 (312)
T ss_pred             eEEEeecCCC-------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence            4455544432             235688999999999999999999 9999999999999999754   5666665 99


Q ss_pred             CcEEEEEEeeCCCCEEEEEecCCeEEEEecC-CCe---EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (667)
Q Consensus       350 ~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~-~~~---~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~  425 (667)
                      ..|..+.|+| ...+|++++.|.+|++|.-. ...   +..+..|...|.+++|+|.|..|++++.|++++||-....- 
T Consensus       151 qDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~-  228 (312)
T KOG0645|consen  151 QDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL-  228 (312)
T ss_pred             ccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc-
Confidence            9999999999 89999999999999999876 322   34577788899999999999999999999999999866221 


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----c--eeeE-EeCCCCCCeEEEEEcCC-CCE
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----V--IHKF-KGLPKSGSQMSASFTTT-GKH  497 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~--~~~~-~~~~~~~~v~~v~~spd-g~~  497 (667)
                                ...|..++..+.|. +|  .|++++.|+.|++|.-..    .  .... ....|...|+++.|.|. ...
T Consensus       229 ----------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~  295 (312)
T KOG0645|consen  229 ----------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNR  295 (312)
T ss_pred             ----------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCc
Confidence                      12234788999998 54  899999999999996332    1  1111 12347889999999995 678


Q ss_pred             EEEEeCCCcEEEEEcC
Q 005956          498 IISIGDDCRVYVWNYD  513 (667)
Q Consensus       498 l~sgs~Dg~I~iWd~~  513 (667)
                      |++|++||.|++|.+.
T Consensus       296 L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  296 LASGGDDGIVNFWELE  311 (312)
T ss_pred             eeecCCCceEEEEEec
Confidence            9999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.8e-28  Score=249.13  Aligned_cols=276  Identities=24%  Similarity=0.437  Sum_probs=226.2

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .++|++|.++|++++|+|++++|++++.||.|++|++.+.                                        
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----------------------------------------   41 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------------------------------   41 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------------------
Confidence            3567899999999999999999999999999999999852                                        


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                           .....+.+|...+..+.|++++ .|++++.|+.|++|++.+++.+..+. |...|.++.|+| ++.++++++.++
T Consensus        42 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~  115 (289)
T cd00200          42 -----ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDK  115 (289)
T ss_pred             -----CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCC
Confidence                 2356677899999999999998 99999999999999999877777665 777999999999 788888888899


Q ss_pred             eEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       373 ~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      .|++||+.+++... +..+...+.+++|+|++.++++++.+|.+++||++..+.... +.      .+...|.++.|+|+
T Consensus       116 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~------~~~~~i~~~~~~~~  188 (289)
T cd00200         116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-LT------GHTGEVNSVAFSPD  188 (289)
T ss_pred             eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee-Ee------cCccccceEEECCC
Confidence            99999999776554 455778899999999998998888899999999986554332 21      23468999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCcccee
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCE  530 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~  530 (667)
                      + ..+++++.++.|++||............+...+.+++|+|++.++++++.||.|++|++.++...... ........+
T Consensus       189 ~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~  267 (289)
T cd00200         189 G-EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL  267 (289)
T ss_pred             c-CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEE
Confidence            6 67888888999999998754333333246779999999999999999988999999999876543332 233456677


Q ss_pred             EEccCCcEEEEecC
Q 005956          531 HFFSEGVSVAVQWP  544 (667)
Q Consensus       531 ~fs~dg~~lav~w~  544 (667)
                      .|++++..++++..
T Consensus       268 ~~~~~~~~l~~~~~  281 (289)
T cd00200         268 AWSPDGKRLASGSA  281 (289)
T ss_pred             EECCCCCEEEEecC
Confidence            89998888877544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=5.7e-31  Score=260.02  Aligned_cols=246  Identities=19%  Similarity=0.355  Sum_probs=212.4

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ..+++|..+|.+|.|+++|.++++|..+|.|++|+..-                                          
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------------------------------------------  169 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------------------------------------------  169 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch------------------------------------------
Confidence            45689999999999999999999999999999998763                                          


Q ss_pred             cccCCcceeeeccc-cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          296 QIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       296 ~~~~~~~~~l~gh~-~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                          ..++.+.+|. ..|.+++|+|+. .+++|+.|++|+|||....+....+ +|.-.|.+++|+| ...+|++|+.|.
T Consensus       170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDn  244 (464)
T KOG0284|consen  170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDN  244 (464)
T ss_pred             ----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCc
Confidence                2345555555 899999999977 9999999999999999888776666 5889999999999 888999999999


Q ss_pred             eEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       373 ~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      .|++||.+++.++. +..|+..|..+.|+|++++|++++.|..|++||+++.+....       .+.|...++++.|+|-
T Consensus       245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~-------~r~Hkkdv~~~~WhP~  317 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT-------YRGHKKDVTSLTWHPL  317 (464)
T ss_pred             eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH-------hhcchhhheeeccccc
Confidence            99999999998774 778999999999999999999999999999999995544321       3345688999999998


Q ss_pred             CCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          452 ESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ...++.+++.||.|..|.+. +.........|...|.+++|+|=|..|++|+.|.++++|....+
T Consensus       318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            78899999999999999976 22222233458999999999999999999999999999987654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.4e-28  Score=259.17  Aligned_cols=288  Identities=21%  Similarity=0.309  Sum_probs=238.4

Q ss_pred             cccccccccceeeccccccEEEEEEcCCCCEEEEEECC-CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCC
Q 005956          206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  284 (667)
Q Consensus       206 ~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~D-g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (667)
                      ..+++.+.+.+.|.--...|..+.|+..|.+||.|+.. |.+-||++++                               
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-------------------------------  339 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-------------------------------  339 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec-------------------------------
Confidence            34567777788888778899999999999999999864 8999999985                               


Q ss_pred             CceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCC
Q 005956          285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD  362 (667)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~  362 (667)
                                    +..+...+||...+++++++||| ++++|+.||.|+|||...+-|..+|. |+..|+.++|+. .+
T Consensus       340 --------------EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g  404 (893)
T KOG0291|consen  340 --------------ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RG  404 (893)
T ss_pred             --------------cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cC
Confidence                          34567778999999999999999 99999999999999999999999996 999999999999 99


Q ss_pred             CEEEEEecCCeEEEEecCCCeEEEeccc--CCceEEEEEeeCCCEEEEEecCC-cEEEEEecCCcceeeeEeeccccCcC
Q 005956          363 NYFISGSIDGKVRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~~~~~~~~--~~~v~~v~~spdg~~l~~gs~dg-~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      +.+++.+.||+|+.||+...+..+....  +-...|++..|.|..+.+|+.|. .|.+|++.++++.-.       ...|
T Consensus       405 ~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi-------LsGH  477 (893)
T KOG0291|consen  405 NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI-------LSGH  477 (893)
T ss_pred             CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh-------hcCC
Confidence            9999999999999999998887664443  34567888888899999999886 699999999887432       4456


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      .++|.+++|+|.+ ..|++++.|.+|++||+..............-+..++|+|+|+-|+++.-||.|.+||.+.+....
T Consensus       478 EgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~  556 (893)
T KOG0291|consen  478 EGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG  556 (893)
T ss_pred             CCcceeeEEcccc-CeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence            7999999999996 799999999999999977543333333467789999999999999999999999999987654321


Q ss_pred             cc---------------------cccCccceeEEccCCcEEEEecCCCC
Q 005956          520 SK---------------------QKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       520 ~~---------------------~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      ..                     ......+.++|++||..+..+-....
T Consensus       557 ~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~  605 (893)
T KOG0291|consen  557 SIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS  605 (893)
T ss_pred             cccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence            10                     11123445799999998887654443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.1e-28  Score=283.90  Aligned_cols=281  Identities=17%  Similarity=0.337  Sum_probs=218.4

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ..+..|.+.|++++|+|+|++||||+.|+.|+||++......       +         .                    
T Consensus       477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-------~---------~--------------------  520 (793)
T PLN00181        477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-------G---------R--------------------  520 (793)
T ss_pred             ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-------c---------c--------------------
Confidence            345679999999999999999999999999999997641000       0         0                    


Q ss_pred             cccCCcceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                       ....+...+.+ ...|.+++|++. + +|++++.||+|+|||+.+++.+..+. |...|++++|+|.++.+|++|+.|+
T Consensus       521 -~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg  598 (793)
T PLN00181        521 -DIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG  598 (793)
T ss_pred             -ccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence             00112233333 457999999874 4 99999999999999999998888774 9999999999976789999999999


Q ss_pred             eEEEEecCCCeEEEecccCCceEEEEEe-eCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          373 KVRIWGVCEKRVVDWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~s-pdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      +|++||+.++..+........+.++.|+ ++|..|++|+.||.|++||++........+      ..|...|+++.|.+.
T Consensus       599 ~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------~~h~~~V~~v~f~~~  672 (793)
T PLN00181        599 SVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------IGHSKTVSYVRFVDS  672 (793)
T ss_pred             EEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------cCCCCCEEEEEEeCC
Confidence            9999999998877655566789999995 479999999999999999998765322221      234578999999743


Q ss_pred             CCeEEEEEeCCCcEEEEECCc--------ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc---
Q 005956          452 ESQRIMITSEDSKLRILDGVD--------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS---  520 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~--------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~---  520 (667)
                        .+|++++.|+.|+|||+..        .+..+.+  |...+..++|+|++.+|++|+.|+.|+||+.........   
T Consensus       673 --~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~  748 (793)
T PLN00181        673 --STLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF  748 (793)
T ss_pred             --CEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence              6899999999999999863        2344444  778889999999999999999999999999865532211   


Q ss_pred             -----------ccccCccceeEEccCCcEEEEecC
Q 005956          521 -----------KQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       521 -----------~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                                 ......+..++|+|++..|+++..
T Consensus       749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~  783 (793)
T PLN00181        749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS  783 (793)
T ss_pred             ccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence                       112234566788888887776554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=9.7e-29  Score=231.40  Aligned_cols=280  Identities=17%  Similarity=0.228  Sum_probs=244.1

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      +++++|.+.|.+++|+-+|..||+|+.|++++||++.....                                       
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------------------------------   54 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------------------------------   54 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------------------------
Confidence            67789999999999999999999999999999999985210                                       


Q ss_pred             cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                          ..-....+|.+.|-.++|+|..  .|++++.|++|++||+..+++.........-.-+.|+| ++.+++.++.|..
T Consensus        55 ----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp-~g~~~~~~~kdD~  129 (313)
T KOG1407|consen   55 ----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSP-DGEYIAVGNKDDR  129 (313)
T ss_pred             ----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcC-CCCEEEEecCccc
Confidence                1123456899999999999866  99999999999999999999999998777777889999 9999999999999


Q ss_pred             EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       374 v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      |.+.|.++.+++........++.++|+.+++.++..+..|.|.|......+...       ..+.|.....+|.|+|+| 
T Consensus       130 it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~-------si~AH~snCicI~f~p~G-  201 (313)
T KOG1407|consen  130 ITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ-------SIKAHPSNCICIEFDPDG-  201 (313)
T ss_pred             EEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc-------ccccCCcceEEEEECCCC-
Confidence            999999999999888888889999999888888888888999999887544332       244556888999999996 


Q ss_pred             eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEc
Q 005956          454 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  533 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs  533 (667)
                      +++++|+.|..+.+||+.++++.-....+.-+|..++||.||++||+||+|..|-|=++++|......+.......++|+
T Consensus       202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWH  281 (313)
T KOG1407|consen  202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWH  281 (313)
T ss_pred             ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEec
Confidence            89999999999999999987766666668899999999999999999999999999999999988887777777788999


Q ss_pred             cCCcEEEEecCCCC
Q 005956          534 SEGVSVAVQWPGIG  547 (667)
Q Consensus       534 ~dg~~lav~w~~~~  547 (667)
                      |...+||.+.+...
T Consensus       282 Pk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  282 PKRPLLAYACDDKD  295 (313)
T ss_pred             CCCceeeEEecCCC
Confidence            99999999876554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.8e-30  Score=261.81  Aligned_cols=292  Identities=22%  Similarity=0.321  Sum_probs=229.9

Q ss_pred             cCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCC-CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          298 EESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~-~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                      +.+.++++.||+..|+++.|.| .+ +|++++.|+.|+||++-. +.|+++|. |..+|..++|++ ++..|++++.|+.
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF  281 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence            4567889999999999999999 55 899999999999999976 89999995 999999999999 9999999999999


Q ss_pred             EEEEecCCCeEEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          374 VRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       374 v~iwdl~~~~~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      |++||+++|++.........++|+.|+|++ +.+++|+.|+.|+.||+++++...+       ...|.+.|..+.|-++|
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-------Yd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-------YDRHLGAILDITFVDEG  354 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-------HHhhhhheeeeEEccCC
Confidence            999999999999988899999999999998 8999999999999999999986543       34456889999999996


Q ss_pred             CeEEEEEeCCCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeE
Q 005956          453 SQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  531 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  531 (667)
                       .++++++.|+.++||+.... ...+....+.....++..+|+++++++-+.|+.|.|+.+...........        
T Consensus       355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~--------  425 (503)
T KOG0282|consen  355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR--------  425 (503)
T ss_pred             -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhh--------
Confidence             89999999999999997643 33333334556677899999999999999999999999765432211110        


Q ss_pred             EccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC---CCCCCCcCCCCCC
Q 005956          532 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS---ATWPAEKLPLWDV  608 (667)
Q Consensus       532 fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~---~~w~~~~~~~~~~  608 (667)
                      |-  |                                ....++.-...|||+++|+..|+..|.   ..|...|+-.. .
T Consensus       426 fe--G--------------------------------h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~-l  470 (503)
T KOG0282|consen  426 FE--G--------------------------------HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK-L  470 (503)
T ss_pred             hc--c--------------------------------eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc-c
Confidence            00  0                                001113334578889999998888888   34555544322 1


Q ss_pred             cccCCCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956          609 TIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  659 (667)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~  659 (667)
                                   |...+.|+.     +.+++--..+++||||||.|++|.
T Consensus       471 -------------kah~~~ci~-----v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  471 -------------KAHDQPCIG-----VDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             -------------ccCCcceEE-----EEecCCCcceeEecccCceeEecC
Confidence                         111235766     334444566789999999999984

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.4e-28  Score=266.61  Aligned_cols=250  Identities=25%  Similarity=0.417  Sum_probs=211.1

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ..+++.+|...|.+++|+|||++|++|+.|++|+|||+..                                        
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~----------------------------------------  234 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD----------------------------------------  234 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC----------------------------------------
Confidence            4556689999999999999999999999999999999943                                        


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                          ....++++.+|...|++++|+|++ ++++|+.|++|+|||+++++++..+. |.+.|++++|++ ++++|++++.|
T Consensus       235 ----~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d  309 (456)
T KOG0266|consen  235 ----DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYD  309 (456)
T ss_pred             ----CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence                134578899999999999999999 99999999999999999999999996 999999999999 99999999999


Q ss_pred             CeEEEEecCCCeE--E-EecccCC--ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          372 GKVRIWGVCEKRV--V-DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       372 g~v~iwdl~~~~~--~-~~~~~~~--~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      +.|++||+.++..  . ....+..  .+++++|+|++.++++++.|+.+++||+..........   ++... ...+.+.
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~-~~~~~~~  385 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT---GHSNL-VRCIFSP  385 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec---ccCCc-ceeEecc
Confidence            9999999999983  3 3333333  58999999999999999999999999999776654421   11111 1245555


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCC-CCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGKHIISIG--DDCRVYVWNYD  513 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~  513 (667)
                      .+++.+ .++++++.|+.|++||............| ...+..+.++|...++++++  .|+.|++|..+
T Consensus       386 ~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  386 TLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cccCCC-CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            667764 89999999999999998865444444446 88899999999999999998  78999999765

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.8e-29  Score=241.17  Aligned_cols=249  Identities=22%  Similarity=0.389  Sum_probs=221.3

Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      .-.+...|++|+.+|..|.|+..|++||+++.|=.+++||..+.                                    
T Consensus       139 tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------------------------------------  182 (406)
T KOG0295|consen  139 TGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF------------------------------------  182 (406)
T ss_pred             chhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH------------------------------------
Confidence            33446789999999999999999999999999999999999851                                    


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                              ...+..+.+|...|.+++|-|.| ++++++.|.+|+.|++.++.|+++|. |...|..++.+. |+.+++++
T Consensus       183 --------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~  253 (406)
T KOG0295|consen  183 --------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASC  253 (406)
T ss_pred             --------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEec
Confidence                    24567788999999999999999 99999999999999999999999996 889999999999 99999999


Q ss_pred             ecCCeEEEEecCCCeEE-EecccCCceEEEEEeeC---------------CCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956          369 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPD---------------GKGFIVGSITGTCHFYKASGNDLKLEKVDF  432 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spd---------------g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~  432 (667)
                      +.|.+|++|-+.++++. ....|..+|.+++|-|.               ++++.+++.|++|++||+.++.+...    
T Consensus       254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t----  329 (406)
T KOG0295|consen  254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT----  329 (406)
T ss_pred             CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE----
Confidence            99999999999998765 36778888999998663               25889999999999999999877554    


Q ss_pred             ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                         ...|...|..++|+|.| ++|+++..|+++++||+.+..+......|...+++++|+.+-.|+++|+-|..+++|..
T Consensus       330 ---L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  330 ---LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ---EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence               23346899999999986 99999999999999999987777766679999999999999999999999999999974

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=7.2e-28  Score=226.21  Aligned_cols=246  Identities=22%  Similarity=0.353  Sum_probs=211.2

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .|+||+.+|+.++|+.+|.+|++++.|.++.||-..+                                           
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-------------------------------------------   41 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-------------------------------------------   41 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-------------------------------------------
Confidence            4679999999999999999999999999999997654                                           


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC----
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID----  371 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D----  371 (667)
                        +..+.++.||++.|+++....+. .+++|+.|.++++||+++|+++..+....+|..+.|++ ++++++....+    
T Consensus        42 --GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~  118 (327)
T KOG0643|consen   42 --GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGY  118 (327)
T ss_pred             --CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCc
Confidence              45688999999999999998877 99999999999999999999999999999999999999 88888776543    


Q ss_pred             -CeEEEEecCC-------Ce-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          372 -GKVRIWGVCE-------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       372 -g~v~iwdl~~-------~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                       +.|.++|++.       .. ...+..+...++.+-|.|-+++|++|..+|.|..||++++........      .|...
T Consensus       119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~------~h~~~  192 (327)
T KOG0643|consen  119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE------EHSSK  192 (327)
T ss_pred             ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh------hhccc
Confidence             6799999983       33 445666778899999999999999999999999999998876554333      34478


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeE-------------------------------------------
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKF-------------------------------------------  477 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~-------------------------------------------  477 (667)
                      |+.++++++. .++++++.|.+-++||..++  +.+|                                           
T Consensus       193 Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF  271 (327)
T KOG0643|consen  193 INDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF  271 (327)
T ss_pred             cccccccCCc-ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhH
Confidence            9999999995 89999999999999996532  1111                                           


Q ss_pred             ----------EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          478 ----------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       478 ----------~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                                ...+|-++|++++|+|+|+..++|++||.|++..++..
T Consensus       272 yh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  272 YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             HHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence                      11248899999999999999999999999999877654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=2.8e-28  Score=232.60  Aligned_cols=248  Identities=21%  Similarity=0.306  Sum_probs=217.1

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .+++|+++|..+.|.+|+..|+++|.|.+|+.||+++                                           
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-------------------------------------------  121 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-------------------------------------------  121 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-------------------------------------------
Confidence            4569999999999999999999999999999999997                                           


Q ss_pred             ccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                        ++.+..+++|...|+.+.-+.-|  ++.+++.|++++|||+++..+++++.....++++.|.. .+..+++|+.|+.|
T Consensus       122 --G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~i  198 (338)
T KOG0265|consen  122 --GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDI  198 (338)
T ss_pred             --ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCce
Confidence              35577888999999999966556  77799999999999999999999999999999999999 88999999999999


Q ss_pred             EEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCC
Q 005956          375 RIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       375 ~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      ++||++.+.... ..+|.+.|+.+..+|+|.++.+-+.|.++++||++-...... ...+.++..........++|+|++
T Consensus       199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~  278 (338)
T KOG0265|consen  199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG  278 (338)
T ss_pred             eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence            999999887664 788999999999999999999999999999999986554443 222333333334556678999995


Q ss_pred             CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                       ..+.+++.|..+++||.......++..+|.+.|+++.|+|...+|.+++.|.+|++=.
T Consensus       279 -~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  279 -TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             -CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence             8999999999999999887777788888999999999999999999999999998743

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.8e-27  Score=226.02  Aligned_cols=281  Identities=23%  Similarity=0.388  Sum_probs=224.0

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      +...+.+..-.+.|++|.|+++|.+|+++++|-+++|||..+                                      
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~--------------------------------------   45 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS--------------------------------------   45 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC--------------------------------------
Confidence            445566666788999999999999999999999999999986                                      


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~s  367 (667)
                             ++.++++..+.-.|..++|.... .++.++.  |.+||..++.+++.++.|. |...|..+..+| -++.|++
T Consensus        46 -------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS  117 (311)
T KOG1446|consen   46 -------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLS  117 (311)
T ss_pred             -------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEe
Confidence                   34466677777778888885444 5555555  8899999999999999996 999999999999 6799999


Q ss_pred             EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce-eeeEeeccccCcCCCCeEEE
Q 005956          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~~~~~~I~~l  446 (667)
                      ++.|++|++||++..++........ -..++|.|.|-.+|++...+.|++||++..... ...+.+..   ......+.+
T Consensus       118 ~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l  193 (311)
T KOG1446|consen  118 SSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDL  193 (311)
T ss_pred             cccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---CCccceeee
Confidence            9999999999999777655443333 245689999999999998889999999976433 33443331   234779999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSG-SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-  522 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~-~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-  522 (667)
                      .|+|+| ++|+.+...+.+++.|.-  .....+....... ....++|+||+++|++|+.||+|.+|+++++....... 
T Consensus       194 ~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  194 EFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             EEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            999997 888888999999999965  4556666655444 23678899999999999999999999999998754432 


Q ss_pred             -ccCccceeEEccCCcEEEEec
Q 005956          523 -KNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       523 -~~~~~~~~~fs~dg~~lav~w  543 (667)
                       ......|+.|+|.-.++|.+.
T Consensus       273 ~~~~~~~~~~fnP~~~mf~sa~  294 (311)
T KOG1446|consen  273 PNGGPVSCVRFNPRYAMFVSAS  294 (311)
T ss_pred             CCCCCccccccCCceeeeeecC
Confidence             356777888999777776653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=5.2e-28  Score=254.93  Aligned_cols=404  Identities=17%  Similarity=0.214  Sum_probs=280.2

Q ss_pred             cccccceeecc-ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceee-----------eeeCCCCCc---cccCCCC
Q 005956          210 TALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-----------KSFTDDGGF---GSNAKEG  274 (667)
Q Consensus       210 ~~~~~~~~l~~-H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~-----------~~~~~~~~~---~~~~~~~  274 (667)
                      +.....+.+++ |++||..|+|+|.|.+||+||.||.|+|||+..+.+..           +.|.+....   .++..++
T Consensus        92 ~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~  171 (775)
T KOG0319|consen   92 PTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG  171 (775)
T ss_pred             ccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence            33445566677 99999999999999999999999999999998765433           333333211   2233344


Q ss_pred             eEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee------
Q 005956          275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD------  347 (667)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~------  347 (667)
                      .++.|+....              ..++..+..|...|+++.|++++ .+++++.|+.+.|||+.+.+++++..      
T Consensus       172 ~v~vwnl~~~--------------~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E  237 (775)
T KOG0319|consen  172 TVRVWNLNDK--------------RTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE  237 (775)
T ss_pred             eEEEEEcccC--------------chHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence            4444333211              12467788999999999999999 89999999999999965332222211      


Q ss_pred             --------------------------------------------------------------------------------
Q 005956          348 --------------------------------------------------------------------------------  347 (667)
Q Consensus       348 --------------------------------------------------------------------------------  347 (667)
                                                                                                      
T Consensus       238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k  317 (775)
T KOG0319|consen  238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK  317 (775)
T ss_pred             eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence                                                                                            


Q ss_pred             ----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956          348 ----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (667)
Q Consensus       348 ----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~  423 (667)
                          .++.|..+.|--.+.++++.++..+.+|+|++.+..+.-+.+|.+.|.++....+|.+|++|+.|.++++|.++++
T Consensus       318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~  397 (775)
T KOG0319|consen  318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN  397 (775)
T ss_pred             hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence                1233444444433567777788888888888777777777889999999997778899999999999999999544


Q ss_pred             cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-------c--eeeEEeCCCCCCeEEEEEcCC
Q 005956          424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-------V--IHKFKGLPKSGSQMSASFTTT  494 (667)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-------~--~~~~~~~~~~~~v~~v~~spd  494 (667)
                      .....   .......|.+.|.+++++..+..+++++|.|.+|++|++..       .  ...+....|...|++++++|+
T Consensus       398 ~~~~~---~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n  474 (775)
T KOG0319|consen  398 CSKSL---CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN  474 (775)
T ss_pred             cchhh---hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence            43322   12224557789999999998889999999999999999875       1  122234568999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCcccc--ccccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCC
Q 005956          495 GKHIISIGDDCRVYVWNYDELCFPSS--KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP  572 (667)
Q Consensus       495 g~~l~sgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  572 (667)
                      .++|||||.|.+.+||+++.......  .|.+.++ ++.|++..+.+|+++.+..  ++++.....    ....++..+.
T Consensus       475 dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw-~V~Fs~~dq~laT~SgD~T--vKIW~is~f----SClkT~eGH~  547 (775)
T KOG0319|consen  475 DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVW-CVSFSKNDQLLATCSGDKT--VKIWSISTF----SCLKTFEGHT  547 (775)
T ss_pred             CceEEecccccceeeecccCceEEEEeeCCccceE-EEEeccccceeEeccCCce--EEEEEeccc----eeeeeecCcc
Confidence            99999999999999999996655333  3444444 5699999999999877664  333322111    1112223333


Q ss_pred             cccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCC-Cc----ccCCCCCceEE
Q 005956          573 WIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVD-DV----RAISATWGLVI  646 (667)
Q Consensus       573 ~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~g~vi  646 (667)
                      -.+--+.|-.++..+..+...|- ..|.-.+..                       |..+.| |.    +.+..+.+..|
T Consensus       548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~e-----------------------C~~tlD~H~DrvWaL~~~~~~~~~  604 (775)
T KOG0319|consen  548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-----------------------CEMTLDAHNDRVWALSVSPLLDMF  604 (775)
T ss_pred             ceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----------------------hhhhhhhccceeEEEeecCcccee
Confidence            33444567777777777766665 456543211                       221111 11    23445566678


Q ss_pred             EecCCCCeEeeeee
Q 005956          647 VTAGCDGMIKTFHN  660 (667)
Q Consensus       647 vta~~~G~ir~f~~  660 (667)
                      ||||-||+|-.|+.
T Consensus       605 ~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  605 VTGGGDGRIIFWKD  618 (775)
T ss_pred             EecCCCeEEEEeec
Confidence            99999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=6.5e-28  Score=229.26  Aligned_cols=234  Identities=15%  Similarity=0.245  Sum_probs=194.2

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      +..++|+||.+.|.++.|++|. +|++++.||.+.|||.-+......+. ...+|..++|+| .++++++|+.|....||
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence            4458899999999999999999 99999999999999998888777776 677999999999 99999999999999999


Q ss_pred             ecCCC--e----E-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          378 GVCEK--R----V-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       378 dl~~~--~----~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      ++.+.  +    + ..+..|.+.+.++.|-+| ..|++++.|.++-+||+++++....   ++    .|.+.|.++.++|
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~---f~----GH~gDV~slsl~p  196 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQV---FH----GHTGDVMSLSLSP  196 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEE---ec----CCcccEEEEecCC
Confidence            99864  2    2 237789999999999775 5899999999999999998876543   33    4568999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc---cCcc
Q 005956          451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK---NSVR  527 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~---~~~~  527 (667)
                      ...+.+++|+.|+..++||++.........+|..-|++++|.|+|.-+++|++|++.++||+...+.......   ...+
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi  276 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI  276 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence            5569999999999999999996555444455999999999999999999999999999999988765433221   2233


Q ss_pred             ceeEEccCCcEEEEe
Q 005956          528 SCEHFFSEGVSVAVQ  542 (667)
Q Consensus       528 ~~~~fs~dg~~lav~  542 (667)
                      +.+.|+..|++|-+.
T Consensus       277 tSv~FS~SGRlLfag  291 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAG  291 (343)
T ss_pred             eeEEEcccccEEEee
Confidence            445666666655554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-27  Score=245.32  Aligned_cols=278  Identities=14%  Similarity=0.280  Sum_probs=231.8

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.+..|+..|.++.|+|...+++++-..|.|.||+.++.                                        
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq----------------------------------------   45 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ----------------------------------------   45 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc----------------------------------------
Confidence            4456679999999999999999999999999999999862                                        


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                           ..+..+.-..-+|.+..|-+.. .+++|+.|..|+||+..+++.++.|. |.++|.|++.+| ...+++++|.|-
T Consensus        46 -----tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm  119 (794)
T KOG0276|consen   46 -----TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDM  119 (794)
T ss_pred             -----eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCcc
Confidence                 3456666667788889998766 99999999999999999999999996 999999999999 888999999999


Q ss_pred             eEEEEecCCCe--EEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          373 KVRIWGVCEKR--VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       373 ~v~iwdl~~~~--~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      +|++||.+.+=  ...+.+|...|.+++|+| |.+.+++++-|++|++|.+.......   .+.    .|...|+++.|-
T Consensus       120 ~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf---Tl~----gHekGVN~Vdyy  192 (794)
T KOG0276|consen  120 TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF---TLE----GHEKGVNCVDYY  192 (794)
T ss_pred             EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce---eee----ccccCcceEEec
Confidence            99999998754  345788999999999999 77899999999999999998665432   222    345789999998


Q ss_pred             cCC-CeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc-cC
Q 005956          450 RDE-SQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK-NS  525 (667)
Q Consensus       450 p~g-~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~  525 (667)
                      +.| ..+|++|+.|.+|+|||..+  +++++.+  |...|..+.|+|.-..|++||+||+|+||+..+-+......- ..
T Consensus       193 ~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle  270 (794)
T KOG0276|consen  193 TGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE  270 (794)
T ss_pred             cCCCcceEEecCCCceEEEeecchHHHHHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence            754 46999999999999999874  5666666  889999999999999999999999999999988765444322 22


Q ss_pred             ccceeEEccCCcEEEEecCCCC
Q 005956          526 VRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       526 ~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      ..-|+.-.+.+..+|+++....
T Consensus       271 RvW~I~~~k~~~~i~vG~Deg~  292 (794)
T KOG0276|consen  271 RVWCIAAHKGDGKIAVGFDEGS  292 (794)
T ss_pred             eEEEEeecCCCCeEEEeccCCc
Confidence            3334566666777888776554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=7.6e-29  Score=245.02  Aligned_cols=274  Identities=17%  Similarity=0.266  Sum_probs=223.4

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .-+-+|..+.|.|+|+.|+||+..|.+.+|+..+.                                             
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------------------------  128 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------------------------  128 (464)
T ss_pred             ccccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------------------------
Confidence            34568999999999999999999999999997541                                             


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      ..-..++.|...|.++.|++++ .+++|..+|.|++|+..-........ |...|++++|+| ++..|++++.||+|+||
T Consensus       129 nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiW  207 (464)
T KOG0284|consen  129 NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIW  207 (464)
T ss_pred             eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEE
Confidence            1123456899999999999999 99999999999999987554444444 448999999999 88999999999999999


Q ss_pred             ecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          378 GVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       378 dl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                      |....+.. .+.+|.-.|.+++|+|.-..|++|+.|..|++||.+++.....   ++.    |...|..+.|+|++ ++|
T Consensus       208 df~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t---lh~----HKntVl~~~f~~n~-N~L  279 (464)
T KOG0284|consen  208 DFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT---LHG----HKNTVLAVKFNPNG-NWL  279 (464)
T ss_pred             eccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh---hhh----ccceEEEEEEcCCC-Cee
Confidence            98876543 4578888999999999999999999999999999999887653   232    34789999999997 999


Q ss_pred             EEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccc--ccccCccceeEEc
Q 005956          457 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSS--KQKNSVRSCEHFF  533 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~~fs  533 (667)
                      +++|.|..++++|++.....+....|...++++.|+|-. .++.+|+.||.|+.|.+...+....  ......+-.+.|+
T Consensus       280 lt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h  359 (464)
T KOG0284|consen  280 LTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH  359 (464)
T ss_pred             EEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecc
Confidence            999999999999998554444444489999999999954 5778899999999999984433222  2223334456899


Q ss_pred             cCCcEEEEecCCCC
Q 005956          534 SEGVSVAVQWPGIG  547 (667)
Q Consensus       534 ~dg~~lav~w~~~~  547 (667)
                      |=|.+||.+.++..
T Consensus       360 PlGhil~tgsnd~t  373 (464)
T KOG0284|consen  360 PLGHILATGSNDRT  373 (464)
T ss_pred             ccceeEeecCCCcc
Confidence            99999988666543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1e-28  Score=236.84  Aligned_cols=277  Identities=22%  Similarity=0.403  Sum_probs=226.6

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +.+..+-|..|||||+||++|+.||-|.||+..++....                                     ++..
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------------------------------------DLkY  253 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------------------------------------DLKY  253 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhh-------------------------------------hhhh
Confidence            566778899999999999999999999999998754310                                     0111


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      .....|.-|..+|.|+.|+.|. +|++|+.||.|++|.+.+|.|++.|.  |+..|+|+.|+. |+..+++++.|.++++
T Consensus       254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRi  332 (508)
T KOG0275|consen  254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRI  332 (508)
T ss_pred             hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEE
Confidence            2233456688999999999998 99999999999999999999999995  999999999999 9999999999999999


Q ss_pred             EecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       377 wdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      .-+..|+++. +.+|...|+...|.+||..+++++.||++++|+..+..+....-.     .....+|.++..-|.++..
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-----~~~d~~vnsv~~~PKnpeh  407 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-----LGTDYPVNSVILLPKNPEH  407 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-----CCCcccceeEEEcCCCCce
Confidence            9999999875 888999999999999999999999999999999998776543111     1234789999999988889


Q ss_pred             EEEEeCCCcEEEEECC-cceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc--ccccCccceeE
Q 005956          456 IMITSEDSKLRILDGV-DVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--KQKNSVRSCEH  531 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~-~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~~  531 (667)
                      ++++...++|+|.++. ..++.+. +....+...+++.||.|.++++.++|+.+|.+.+.++.....  .+.+.++. +.
T Consensus       408 ~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG-l~  486 (508)
T KOG0275|consen  408 FIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG-LT  486 (508)
T ss_pred             EEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc-cc
Confidence            9999999999999987 4455554 334566778889999999999999999999999998876433  23333333 24


Q ss_pred             EccCCcEEE
Q 005956          532 FFSEGVSVA  540 (667)
Q Consensus       532 fs~dg~~la  540 (667)
                      -+|+-..+|
T Consensus       487 HHPHqNllA  495 (508)
T KOG0275|consen  487 HHPHQNLLA  495 (508)
T ss_pred             cCcccchhh
Confidence            455444443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=7e-27  Score=228.46  Aligned_cols=284  Identities=15%  Similarity=0.198  Sum_probs=228.2

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .++|..|+++|.+++.+|+.+++||||.|-.-.||++.++                                        
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g----------------------------------------   96 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG----------------------------------------   96 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC----------------------------------------
Confidence            4577899999999999999999999999999999999873                                        


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                           ....++.+|...|+++.|+.+| +|+||..+|.|+||++.++.....+. .-..|.-+.|+| ...+|+.|+.||
T Consensus        97 -----e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DG  170 (399)
T KOG0296|consen   97 -----EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDG  170 (399)
T ss_pred             -----cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCC
Confidence                 3467888999999999999999 99999999999999999998887775 666888899999 999999999999


Q ss_pred             eEEEEecCCC-eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEe-----ecc------------
Q 005956          373 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD-----FHD------------  434 (667)
Q Consensus       373 ~v~iwdl~~~-~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~-----~~~------------  434 (667)
                      .+.+|.+..+ .+..+.+|..++++=+|.|+|+.+++|..||+|++|+..++......-.     .+.            
T Consensus       171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~  250 (399)
T KOG0296|consen  171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK  250 (399)
T ss_pred             cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence            9999999994 4455788999999999999999999999999999999988755432110     000            


Q ss_pred             -c--------------------------cCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCC
Q 005956          435 -R--------------------------KKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS  485 (667)
Q Consensus       435 -~--------------------------~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~  485 (667)
                       .                          ...+...+.++.+.|..  -.+.++|+-||+|.|||+.....+.... |...
T Consensus       251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~  329 (399)
T KOG0296|consen  251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDG  329 (399)
T ss_pred             ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCc
Confidence             0                          00011112223333321  2467889999999999988655555543 7888


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEecCCC
Q 005956          486 QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       486 v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      |+.+.|-+ ..+|++++.||.|++||..++.+....+ +...+-..+.+|+...++......
T Consensus       330 V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  330 VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            99999988 7899999999999999999998876643 334455668899888877765544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.8e-27  Score=226.14  Aligned_cols=273  Identities=19%  Similarity=0.379  Sum_probs=207.2

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ..-|....+..|++++.+.+|||||.++|||+.|..|+|.|+...-..             .....+.......      
T Consensus       100 ~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlak-------------s~~~em~~~~~qa------  160 (430)
T KOG0640|consen  100 PSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAK-------------SKPKEMISGDTQA------  160 (430)
T ss_pred             CcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhh-------------cchhhhccCCccc------
Confidence            445666778899999999999999999999999999999999842111             0000111011100      


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE---eEEeeCCCcEEEEEEeeCCCCEE
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~---~~~~~h~~~V~~l~f~p~d~~~l  365 (667)
                              ....+++|..|..+|+++.|+|.. .|++++.|++|+++|+.....   .+.|....+|.++.|+| .|.+|
T Consensus       161 --------~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefl  231 (430)
T KOG0640|consen  161 --------RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFL  231 (430)
T ss_pred             --------CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceE
Confidence                    113468899999999999999988 999999999999999976543   34556778999999999 99999


Q ss_pred             EEEecCCeEEEEecCCCeEEE----ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956          366 ISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~~~----~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~  441 (667)
                      +.|..-.++++||+.+-++..    -..|.+.|+++.|++.|+..++|+.||.|++||--.+++....-..++     +.
T Consensus       232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-----gs  306 (430)
T KOG0640|consen  232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-----GS  306 (430)
T ss_pred             EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-----Cc
Confidence            999999999999999988764    346788999999999999999999999999999887777554333333     37


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCC---CeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSG---SQMSASFTTTGKHIISIGD-DCRVYVWNYDEL  515 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~---~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~  515 (667)
                      .|++..|..+| +++++++.|..+++|.+.  ..+..+.+.+..+   .-+...|+....|++.-.+ .+.+.-||..+.
T Consensus       307 evcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta  385 (430)
T KOG0640|consen  307 EVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA  385 (430)
T ss_pred             eeeeEEEccCC-eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence            79999999996 999999999999999965  4555665542222   2234556555666655443 345666666554


Q ss_pred             C
Q 005956          516 C  516 (667)
Q Consensus       516 ~  516 (667)
                      .
T Consensus       386 d  386 (430)
T KOG0640|consen  386 D  386 (430)
T ss_pred             h
Confidence            3

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=6e-27  Score=217.90  Aligned_cols=251  Identities=18%  Similarity=0.310  Sum_probs=205.8

Q ss_pred             cCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe--EeEEe
Q 005956          270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF  346 (667)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~  346 (667)
                      ...+..+++|....               +.+..+++...+.|+.|...|++ .|++++ ...||+||+.++.  ++.+|
T Consensus        16 A~YDhTIRfWqa~t---------------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~   79 (311)
T KOG0315|consen   16 AGYDHTIRFWQALT---------------GICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATF   79 (311)
T ss_pred             ccCcceeeeeehhc---------------CeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEE
Confidence            44555666665543               45577787778899999999999 555554 5689999998775  56677


Q ss_pred             e-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956          347 D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (667)
Q Consensus       347 ~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~  425 (667)
                      . |...|+.+.|.. +++.+++|+.||+++|||++.-.+.+...+..+|+++..+|+-..|++|..+|.|++||+..+..
T Consensus        80 e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   80 EGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             eccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence            5 889999999999 99999999999999999999988888888999999999999999999999999999999998765


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--------ceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------VIHKFKGLPKSGSQMSASFTTTGKH  497 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--------~~~~~~~~~~~~~v~~v~~spdg~~  497 (667)
                      ..+.+.-.      ...|.++...||| .+++++...|..++|++..        ++.+++.  |.+.+..+.+|||++|
T Consensus       159 ~~~liPe~------~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~  229 (311)
T KOG0315|consen  159 THELIPED------DTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKY  229 (311)
T ss_pred             ccccCCCC------CcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcE
Confidence            54433222      3789999999997 8899999999999999642        2334444  8999999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCC-Cc--cccccccCccceeEEccCCcEEEEecCCCC
Q 005956          498 IISIGDDCRVYVWNYDEL-CF--PSSKQKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       498 l~sgs~Dg~I~iWd~~~~-~~--~~~~~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      ||++|.|.+++||+.++. +.  ....+..-++.| +||.||++|+++.++..
T Consensus       230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc-~FS~dg~YlvTassd~~  281 (311)
T KOG0315|consen  230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC-AFSADGEYLVTASSDHT  281 (311)
T ss_pred             EEeecCCceEEEEecCCceeeEEEeecCCceEEee-eeccCccEEEecCCCCc
Confidence            999999999999999987 21  223344566666 99999999999888754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.1e-27  Score=238.17  Aligned_cols=276  Identities=13%  Similarity=0.165  Sum_probs=228.8

Q ss_pred             ccceEEEEecCCC-eEEEEeCCCcEEEEecCCC--eEeEEee-CCCcEEEEEEeeCCCC-EEEEEecCCeEEEEecCCCe
Q 005956          309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKR  383 (667)
Q Consensus       309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f~p~d~~-~l~sgs~Dg~v~iwdl~~~~  383 (667)
                      .+.|+++.|+|.. .|++++.|++++||.++..  ..++.+. ...+|.+..|.| +|. .+++++....++.||+.+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence            4679999999998 9999999999999998743  3444444 567999999999 777 89999999999999999988


Q ss_pred             EEEeccc----CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          384 VVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       384 ~~~~~~~----~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                      +..+...    ...+..+.++|++++|++.+..|.|++....++.+... +.+       .+.|..++|+.++ +.|+++
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s-~Ki-------eG~v~~~~fsSds-k~l~~~  362 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS-FKI-------EGVVSDFTFSSDS-KELLAS  362 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe-eee-------ccEEeeEEEecCC-cEEEEE
Confidence            7764332    33578889999999999999999999999988877543 222       3679999999886 888899


Q ss_pred             eCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc-------cccccCcccee
Q 005956          460 SEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS-------SKQKNSVRSCE  530 (667)
Q Consensus       460 s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~-------~~~~~~~~~~~  530 (667)
                      +.+|.|++||++.  +++++... ..-.-++++.+++|.|||+|+..|.|.|||.++.....       ..+..+.++.+
T Consensus       363 ~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl  441 (514)
T KOG2055|consen  363 GGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL  441 (514)
T ss_pred             cCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence            9999999999884  55666654 23345788889999999999999999999976543211       12456677889


Q ss_pred             EEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCCC
Q 005956          531 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA  596 (667)
Q Consensus       531 ~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~~  596 (667)
                      .|++|+++||+++......+++.+.++.+. |.|||+..++..++++.+|||+++|+|.|+..|..
T Consensus       442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv  506 (514)
T KOG2055|consen  442 QFNHDAQILAIASRVKKNALRLVHVPSCTV-FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV  506 (514)
T ss_pred             eeCcchhhhhhhhhccccceEEEeccceee-eccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence            999999999999999999999777777766 88999999999999999999999999999998874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=1.5e-26  Score=232.68  Aligned_cols=245  Identities=22%  Similarity=0.388  Sum_probs=211.6

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      -.+..+|..|+++|.+++|+.+|.||++++.||++.+||..++                                     
T Consensus       266 G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-------------------------------------  308 (524)
T KOG0273|consen  266 GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-------------------------------------  308 (524)
T ss_pred             chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-------------------------------------
Confidence            3445577889999999999999999999999999999999863                                     


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                              ...+.+.-|..+-.++.|-.+..+++++.|+.|+|+.+....++.++. |.+.|.++.|+| .+.+|++++.
T Consensus       309 --------~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~Sd  379 (524)
T KOG0273|consen  309 --------TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSD  379 (524)
T ss_pred             --------eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecC
Confidence                    234566678888889999988899999999999999999999988885 999999999999 9999999999


Q ss_pred             CCeEEEEecCCCeEE-EecccCCceEEEEEeeCC---------CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956          371 DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDG---------KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg---------~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~  440 (667)
                      |++++||.+...... .+..|...|..+.|+|+|         ..+++++.|+++++||+..+.....       ...|.
T Consensus       380 D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~-------f~kH~  452 (524)
T KOG0273|consen  380 DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT-------LMKHQ  452 (524)
T ss_pred             CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe-------eccCC
Confidence            999999998776555 577888999999999965         4688999999999999998766543       33456


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          441 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      .+|.+++|+|+| .++++|+.||.|.||+...  ..+.++   ..+.|..++|+.+|.+|..+-.|+.+.+-|+.
T Consensus       453 ~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l~~s~~---~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  453 EPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKLVKSYQ---GTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CceEEEEecCCC-cEEEecCCCCeeEeccccchheeEeec---CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            899999999996 8999999999999999764  444444   46679999999999999999999999998874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1e-25  Score=228.79  Aligned_cols=244  Identities=26%  Similarity=0.477  Sum_probs=205.5

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ....+..|...|..+.|+|++++|++++.||.|++|++.+.                                       
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~---------------------------------------   83 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG---------------------------------------   83 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc---------------------------------------
Confidence            34567789999999999999999999999999999999852                                       


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                            +.+..+..|...|.++.|++++ ++++++.|+.|++||+.+++....+. |...|.++.|+| ++.++++++.|
T Consensus        84 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~  156 (289)
T cd00200          84 ------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD  156 (289)
T ss_pred             ------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCC
Confidence                  3456677888899999999988 77777779999999999888888776 888999999999 78888888889


Q ss_pred             CeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          372 GKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       372 g~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      +.|++||+.+++... +..+...+.+++|+|+++.+++++.+|.+++||++.......       ...+...+.++.|+|
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-------~~~~~~~i~~~~~~~  229 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT-------LRGHENGVNSVAFSP  229 (289)
T ss_pred             CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc-------hhhcCCceEEEEEcC
Confidence            999999999777554 456667899999999999999999999999999987544322       112346899999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      + +.++++++.++.|++||............|...+.+++|+|++++|++++.|+.|++|+
T Consensus       230 ~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         230 D-GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             C-CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            8 47777777899999999875443333335778899999999999999999999999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.2e-26  Score=218.71  Aligned_cols=275  Identities=20%  Similarity=0.303  Sum_probs=219.1

Q ss_pred             cccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          220 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       220 ~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      .-.+.|.+++||| ...+|+.|+.||+||+|+++....                                          
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------------------------------------------   62 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------------------------------------------   62 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCc------------------------------------------
Confidence            3578899999999 555777999999999999985100                                          


Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCC--EEEEEecCCeEE
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVR  375 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~--~l~sgs~Dg~v~  375 (667)
                      .. -+....|.++|.+++|+.+| .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ ...  .|++|+.|.+|+
T Consensus        63 ~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlK  140 (347)
T KOG0647|consen   63 LV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLK  140 (347)
T ss_pred             cc-chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEeccccccee
Confidence            01 13345789999999999999 99999999999999999998888888999999999988 555  799999999999


Q ss_pred             EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       376 iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      .||++....+......+.+.++..-.  ..+++++.+..|.+|++++.....+.+.-.     ..-.+.+++..++. ..
T Consensus       141 fWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k~~~Sp-----Lk~Q~R~va~f~d~-~~  212 (347)
T KOG0647|consen  141 FWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFKRIESP-----LKWQTRCVACFQDK-DG  212 (347)
T ss_pred             ecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhhhhcCc-----ccceeeEEEEEecC-Cc
Confidence            99999999888888888888876543  478899999999999998765543322111     23568899998885 55


Q ss_pred             EEEEeCCCcEEEEECCcc----eeeEEeCCC-------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-ccc
Q 005956          456 IMITSEDSKLRILDGVDV----IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQK  523 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~~----~~~~~~~~~-------~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~  523 (667)
                      .+.|+-+|.+.|..+...    ...|+.|..       -..|++++|+|.-..|+|+|.||++.+||-+....... ...
T Consensus       213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~  292 (347)
T KOG0647|consen  213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH  292 (347)
T ss_pred             eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence            699999999999876542    234444432       23578899999999999999999999999877655444 455


Q ss_pred             cCccceeEEccCCcEEEEecCCC
Q 005956          524 NSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       524 ~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      ...++|..|+.+|.++|.+-..+
T Consensus       293 ~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  293 PQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             CCccceeEecCCCCEEEEEeecc
Confidence            67788889999999999874443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-26  Score=248.30  Aligned_cols=277  Identities=16%  Similarity=0.256  Sum_probs=227.7

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      ..-+..|..++|+|...+++++-..|+|++||..-                                             
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM---------------------------------------------   40 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM---------------------------------------------   40 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhh---------------------------------------------
Confidence            34567788999999999999999999999999873                                             


Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      ...+..|..|.++|..++|+|++ ++++|+.|..|+||+..+.+|+.++ +|-++|..+.|++ .-..|+++|.|.+|+|
T Consensus        41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrI  119 (1202)
T KOG0292|consen   41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRI  119 (1202)
T ss_pred             hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEE
Confidence            34578889999999999999999 9999999999999999999999877 5999999999999 8889999999999999


Q ss_pred             EecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee----------------------Eeec
Q 005956          377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK----------------------VDFH  433 (667)
Q Consensus       377 wdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~----------------------~~~~  433 (667)
                      |+..+++++. ..+|...|.|..|+|....+++++-|.+|++||+.+-+.....                      ....
T Consensus       120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK  199 (1202)
T KOG0292|consen  120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK  199 (1202)
T ss_pred             EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence            9999998775 7889999999999999999999999999999999753221110                      0000


Q ss_pred             cccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          434 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       434 ~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      .-...|...|+-++|+|.- .++++|+.|..|++|.+....  ..-...+|...|.++-|+|...+|++.|+|+.|+|||
T Consensus       200 ~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  200 HVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             eeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            1123456779999999984 799999999999999876322  2222334899999999999999999999999999999


Q ss_pred             cCCCCccccc-cccCccceeEEccCCcEEEEe
Q 005956          512 YDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       512 ~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~  542 (667)
                      +......... +.....-+++-+|....+|++
T Consensus       279 m~kRt~v~tfrrendRFW~laahP~lNLfAAg  310 (1202)
T KOG0292|consen  279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAG  310 (1202)
T ss_pred             cccccceeeeeccCCeEEEEEecCCcceeeee
Confidence            9876654433 333334456777777777664

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.9e-27  Score=219.15  Aligned_cols=240  Identities=20%  Similarity=0.369  Sum_probs=205.8

Q ss_pred             ccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          221 HKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       221 H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      -.+.+..++|+++. ..+++++.||+++|||+..                                            ..
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------------------------~s   94 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------------------------PS   94 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------------------------CC
Confidence            46789999999864 5889999999999999653                                            35


Q ss_pred             CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      +|++.++.|..+|.++.|++..  .+++++.|++|++|+...++.+.+|. |..-|...+|+|..+++|++++.|+++++
T Consensus        95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l  174 (311)
T KOG0277|consen   95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL  174 (311)
T ss_pred             cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence            7899999999999999999855  78888999999999999999999985 99999999999999999999999999999


Q ss_pred             EecCC-CeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          377 WGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       377 wdl~~-~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      ||++. ++.+.+..|...+.++.|+. +.+.+++|+.|+.|+.||++..+.+...+      ..|+-.|..+.|+|.-..
T Consensus       175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL------~gh~~AVRkvk~Sph~~~  248 (311)
T KOG0277|consen  175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL------NGHGLAVRKVKFSPHHAS  248 (311)
T ss_pred             EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee------cCCceEEEEEecCcchhh
Confidence            99976 55666777888999999998 66788999999999999999877654333      334588999999998778


Q ss_pred             EEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 005956          455 RIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~  512 (667)
                      .|++++.|-+++|||...   .+.++.  .|...+..+.||+ ++.++|+.+-|+.++||+.
T Consensus       249 lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  249 LLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             HhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence            999999999999999762   333333  3888899999987 5678999999999999984

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=1.9e-27  Score=230.17  Aligned_cols=244  Identities=24%  Similarity=0.436  Sum_probs=203.4

Q ss_pred             ccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956          209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  288 (667)
Q Consensus       209 ~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (667)
                      ...+++...|.||+|.|.|+.|.  .+.|++|+.|.+|+|||+++                                   
T Consensus       224 ~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-----------------------------------  266 (499)
T KOG0281|consen  224 KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-----------------------------------  266 (499)
T ss_pred             cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-----------------------------------
Confidence            34567778899999999999986  56999999999999999997                                   


Q ss_pred             ecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeE---E-eeCCCcEEEEEEeeCCCCE
Q 005956          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN---V-FDHHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~---~-~~h~~~V~~l~f~p~d~~~  364 (667)
                                ++++.++.+|...|..+.|+. |++++++.|.+|.+||+....-+.   + .+|...|..+.|   +.++
T Consensus       267 ----------ge~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~ky  332 (499)
T KOG0281|consen  267 ----------GEPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKY  332 (499)
T ss_pred             ----------CchhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccce
Confidence                      467888999999999999984 799999999999999998765332   2 259999999999   5689


Q ss_pred             EEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956          365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                      +++++.|.+|++|++.+++.+. +.+|+..|.|+.|  .|+++++|+.|.+|++||+..+.+...       ...|..-|
T Consensus       333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv-------LeGHEeLv  403 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-------LEGHEELV  403 (499)
T ss_pred             EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH-------HhchHHhh
Confidence            9999999999999999999886 6678888888876  578999999999999999998876532       22345779


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCcce---------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      .++.|..   +.+++|+.||+|+|||+....         +......|.+.|..+.|  |...|++++.|.+|.|||+.+
T Consensus       404 RciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  404 RCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             hheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence            9999964   589999999999999975321         22233458889999998  466899999999999999987


Q ss_pred             CCc
Q 005956          515 LCF  517 (667)
Q Consensus       515 ~~~  517 (667)
                      +..
T Consensus       479 ~~~  481 (499)
T KOG0281|consen  479 GPP  481 (499)
T ss_pred             CCc
Confidence            643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=9e-26  Score=216.66  Aligned_cols=272  Identities=18%  Similarity=0.243  Sum_probs=220.0

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      -+..|.+|.|+|.+..|+.++.||++++|++...                                              
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~----------------------------------------------   45 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN----------------------------------------------   45 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch----------------------------------------------
Confidence            3678999999999999999999999999999852                                              


Q ss_pred             cceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                      .+.....|..++++++|.++..+++|+.||.|+.+|+.++.....-.|..+|.|+.+.+ ..+.+++|+.|++|++||.+
T Consensus        46 ~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   46 SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence            12223358899999999998899999999999999999999988888999999999999 78899999999999999999


Q ss_pred             CCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          381 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       381 ~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                      ....+........|.++..  .|+.|++|+.+..+.+||+++.....+.     ....-...+.++++.|++ .-+++++
T Consensus       125 ~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~-----reS~lkyqtR~v~~~pn~-eGy~~sS  196 (323)
T KOG1036|consen  125 NKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR-----RESSLKYQTRCVALVPNG-EGYVVSS  196 (323)
T ss_pred             ccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh-----ccccceeEEEEEEEecCC-CceEEEe
Confidence            8666655555667777665  5789999999999999999987765421     111123678999999964 6688899


Q ss_pred             CCCcEEEEECCc------ceeeEEeCCC-------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc-Cc
Q 005956          461 EDSKLRILDGVD------VIHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN-SV  526 (667)
Q Consensus       461 ~dg~I~iwd~~~------~~~~~~~~~~-------~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~  526 (667)
                      -||.|.+=....      ....|+.|..       ..+|++++|+|-...+|||+.||.|.+||+.+.+.....+.- ..
T Consensus       197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S  276 (323)
T KOG1036|consen  197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS  276 (323)
T ss_pred             ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc
Confidence            999988754332      2233333221       247899999999999999999999999999988765555443 55


Q ss_pred             cceeEEccCCcEEEEecCCCC
Q 005956          527 RSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       527 ~~~~~fs~dg~~lav~w~~~~  547 (667)
                      +..++|+.||..||++.+...
T Consensus       277 I~slsfs~dG~~LAia~sy~y  297 (323)
T KOG1036|consen  277 ISSLSFSMDGSLLAIASSYQY  297 (323)
T ss_pred             eEEEEeccCCCeEEEEechhh
Confidence            788899999999999877543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.4e-26  Score=244.30  Aligned_cols=256  Identities=18%  Similarity=0.291  Sum_probs=216.1

Q ss_pred             ccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956          209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  288 (667)
Q Consensus       209 ~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (667)
                      ...++. +.+.||+..|.++....+|-+||||+.|.++++|.+++...                                
T Consensus       353 ~~~~~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~--------------------------------  399 (775)
T KOG0319|consen  353 LPTSYC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS--------------------------------  399 (775)
T ss_pred             cCCCce-EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc--------------------------------
Confidence            344443 48899999999999777889999999999999999854211                                


Q ss_pred             ecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE---eEEe-------eCCCcEEEEE
Q 005956          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC---LNVF-------DHHNYVTCVQ  356 (667)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~---~~~~-------~h~~~V~~l~  356 (667)
                               ...++....||++.|.+++++..+  +|+++|.|+++++|++...+.   ...+       .|...|+|++
T Consensus       400 ---------~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va  470 (775)
T KOG0319|consen  400 ---------KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA  470 (775)
T ss_pred             ---------hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence                     123456677999999999998777  999999999999999976221   1111       3999999999


Q ss_pred             EeeCCCCEEEEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956          357 FNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  435 (667)
Q Consensus       357 f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~  435 (667)
                      .+| ++++|++||.|.+.+||++....+. .+.+|...|.++.|+|..+.+++++.|++|+||.+.+..+...       
T Consensus       471 ia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT-------  542 (775)
T KOG0319|consen  471 IAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT-------  542 (775)
T ss_pred             ecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee-------
Confidence            999 9999999999999999999987766 4788999999999999999999999999999999998876532       


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ...|...|..++|-.+| ..|++++.||.|++|++.+..+......|...|.+++.+|.+.+++||+.||.|.+|.=.+.
T Consensus       543 ~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  543 FEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             ecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            33456899999999986 89999999999999999866655555569999999999999999999999999999975443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=9.3e-26  Score=220.61  Aligned_cols=274  Identities=17%  Similarity=0.243  Sum_probs=222.2

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeee-----------CCCCC-ccccCCCCeEEeccc
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF-----------TDDGG-FGSNAKEGKIKFGKK  281 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~  281 (667)
                      ..-++.+|++.|+++.||.||.|||||+.+|.|+||++.++......+           ++.+. ++++..++.+-.|..
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            345678999999999999999999999999999999999876555443           33332 223334444333322


Q ss_pred             CCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEe
Q 005956          282 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFN  358 (667)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~  358 (667)
                      ..               +...+.+.||..++++=.|.|+| +++++..||+|++||..+++++....  ......++.++
T Consensus       178 p~---------------~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~  242 (399)
T KOG0296|consen  178 PS---------------QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN  242 (399)
T ss_pred             CC---------------cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc
Confidence            21               25577889999999999999999 99999999999999999999998886  44477899999


Q ss_pred             eCCCCEEEEEecCCeEEEEecCCCeEEEecc---------cCCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcce
Q 005956          359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLK  426 (667)
Q Consensus       359 p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~---------~~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~  426 (667)
                      . .+..++.|+.++.+++-+..+++++....         +...+.++.+.|   .=.+.|+|+.||+|.|||+....+.
T Consensus       243 ~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R  321 (399)
T KOG0296|consen  243 L-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR  321 (399)
T ss_pred             c-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence            8 89999999999999999999999876443         233455555555   4467899999999999999876654


Q ss_pred             eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005956          427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  506 (667)
Q Consensus       427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~  506 (667)
                      .        ...|...|+.+.|-++  .+|++++.+|.|+.||.+....++...+|...|.+++++|+.++++|+|.|++
T Consensus       322 ~--------~c~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  322 H--------ICEHEDGVTKLKWLNT--DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             e--------eccCCCceEEEEEcCc--chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence            2        2334577999999984  69999999999999999987777777779999999999999999999999999


Q ss_pred             EEEEEcC
Q 005956          507 VYVWNYD  513 (667)
Q Consensus       507 I~iWd~~  513 (667)
                      .+||++.
T Consensus       392 a~VF~v~  398 (399)
T KOG0296|consen  392 ALVFEVP  398 (399)
T ss_pred             EEEEecC
Confidence            9999875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-25  Score=215.96  Aligned_cols=242  Identities=21%  Similarity=0.344  Sum_probs=205.1

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ..+++|.++|++++.+  |+|+|+||.|-+|+|||+..                                          
T Consensus        37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k------------------------------------------   72 (362)
T KOG0294|consen   37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK------------------------------------------   72 (362)
T ss_pred             ccccccccceeEEEec--ceeEeccCCCCcEEEEeccc------------------------------------------
Confidence            4567999999999986  88999999999999999985                                          


Q ss_pred             cccCCcceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                         ...+..+-.|.+.|+++.|.++-   .|++|+.||.|.+|++....++..++ |...|+.++.+| .+++.++.+.|
T Consensus        73 ---~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D  148 (362)
T KOG0294|consen   73 ---RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGD  148 (362)
T ss_pred             ---hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCC
Confidence               34566777899999999998765   89999999999999999999999996 888999999999 99999999999


Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      +.+++||+-.++.-.........+.+.|+|.|.+++++..+ .|-+|.+.+..+-.. +..       ...+.++.|...
T Consensus       149 ~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~-i~~-------~~r~l~~~~l~~  219 (362)
T KOG0294|consen  149 QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFRE-IEN-------PKRILCATFLDG  219 (362)
T ss_pred             ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhh-hhc-------cccceeeeecCC
Confidence            99999999999887777777777789999999999998866 688998876654322 111       145777777654


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~--spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                        ..+++|+.|+.|.+||............|...|-++.+  .|++.||+|+|.||.|+|||++...
T Consensus       220 --~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  220 --SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             --ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence              59999999999999998854444444458999999884  6788999999999999999998763

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=5.1e-26  Score=223.37  Aligned_cols=253  Identities=18%  Similarity=0.268  Sum_probs=212.0

Q ss_pred             ccceeeccccccEEEEEEcCCC---CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDG---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg---~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ....++.+|.++|.++++....   ..|++|+.|.++++|.++.+...                                
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~--------------------------------  182 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK--------------------------------  182 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh--------------------------------
Confidence            4456788999999988875433   36999999999999998753221                                


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-------------------------CeEe
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------------------------NQCL  343 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-------------------------~~~~  343 (667)
                               .+.+..-.||...|.++...+++ ++++|+.|.+|+||+..+                         +.++
T Consensus       183 ---------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  183 ---------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             ---------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence                     12233445999999999999999 999999999999999321                         1223


Q ss_pred             EEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC
Q 005956          344 NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (667)
Q Consensus       344 ~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~  422 (667)
                      .++ +|..+|.++.|.+  ...+++++.|.+|+.||+.++...........++++.++|..++|++|+.|..+++||.++
T Consensus       254 vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             EEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence            333 4999999999996  7789999999999999999999988788888999999999999999999999999999998


Q ss_pred             CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          423 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      +.-......+.+|    .+.|.++.|+|.+...|++++.|+++++||++... ..|...+|...|.++.|+ ++.+|++|
T Consensus       332 ~~gs~v~~s~~gH----~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSG  406 (423)
T KOG0313|consen  332 GDGSVVSQSLIGH----KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSG  406 (423)
T ss_pred             CCCceeEEeeecc----hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEec
Confidence            8766555555554    57999999999988899999999999999999665 667777799999999996 67899999


Q ss_pred             eCCCcEEEEEcC
Q 005956          502 GDDCRVYVWNYD  513 (667)
Q Consensus       502 s~Dg~I~iWd~~  513 (667)
                      |.|++|+|+.-.
T Consensus       407 GaD~~l~i~~~~  418 (423)
T KOG0313|consen  407 GADNKLRIFKGS  418 (423)
T ss_pred             cCcceEEEeccc
Confidence            999999998754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.9e-26  Score=228.02  Aligned_cols=252  Identities=21%  Similarity=0.299  Sum_probs=206.9

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      +.+.+++.+|..+|..+.||||.+||++++.|..+++||+.+++..                                  
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~----------------------------------  304 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR----------------------------------  304 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh----------------------------------
Confidence            5667899999999999999999999999999999999999985432                                  


Q ss_pred             CCcccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEE
Q 005956          292 DEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       292 ~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~s  367 (667)
                                 +.+ .+|...+.+++|.||| .+++|+.|+++..||++... +....  ....|.+++..+ ||+++++
T Consensus       305 -----------~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~-Dgk~vl~  371 (519)
T KOG0293|consen  305 -----------HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY-DGKYVLL  371 (519)
T ss_pred             -----------hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC-CCcEEEE
Confidence                       111 2356789999999999 99999999999999998543 33332  345799999999 9999999


Q ss_pred             EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      ...|..|++|+..+...........+|++++++.||+++++.-.+..+++||+..+.+..+   +.+++.  +..|..-+
T Consensus       372 v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k---Y~Ghkq--~~fiIrSC  446 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK---YFGHKQ--GHFIIRSC  446 (519)
T ss_pred             EecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH---hhcccc--cceEEEec
Confidence            9999999999998877766777788999999999999999999999999999997766543   222211  24466666


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      |-..+..++++|++|+.|+||+...........+|...|++++|+|.. .++|+||+||+|+||.....
T Consensus       447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            765545799999999999999977554444445589999999999976 46899999999999987654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=3.7e-27  Score=228.23  Aligned_cols=231  Identities=23%  Similarity=0.399  Sum_probs=194.4

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      ....|.|+.+.  ...+++|..|.+|+|||..+.                                             .
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~---------------------------------------------~  228 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL---------------------------------------------E  228 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccH---------------------------------------------H
Confidence            45689999986  447999999999999999862                                             4


Q ss_pred             cceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      .+..+.||++.|.|+.|... .+++|+.|.+|+|||++++++++++ .|...|..+.|+   ..++++++.|.++.+||+
T Consensus       229 c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm  304 (499)
T KOG0281|consen  229 CLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDM  304 (499)
T ss_pred             HHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEec
Confidence            46778999999999998643 8999999999999999999999887 588899999995   579999999999999999


Q ss_pred             CCCeEE----EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          380 CEKRVV----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       380 ~~~~~~----~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      ....-+    .+.+|...|+.+.|+  .+++++++.|.+|++|++.+......       ...|...|.|+++.   +++
T Consensus       305 ~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt-------l~gHkRGIAClQYr---~rl  372 (499)
T KOG0281|consen  305 ASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT-------LNGHKRGIACLQYR---DRL  372 (499)
T ss_pred             cCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehh-------hhcccccceehhcc---CeE
Confidence            876533    256889999999985  46999999999999999998776543       22334678888875   379


Q ss_pred             EEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956          456 IMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      +++|+.|.+|++||+..  +...+++  |..-|.++.|  |.+.|++|+.||+|+|||+..+.-+
T Consensus       373 vVSGSSDntIRlwdi~~G~cLRvLeG--HEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  373 VVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             EEecCCCceEEEEeccccHHHHHHhc--hHHhhhheee--cCceeeeccccceEEEEecccccCC
Confidence            99999999999999874  4455555  8899999999  4689999999999999999887544

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=4.5e-26  Score=221.75  Aligned_cols=253  Identities=20%  Similarity=0.338  Sum_probs=215.6

Q ss_pred             ccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCc
Q 005956          207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  286 (667)
Q Consensus       207 ~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (667)
                      .++..-.+..+|.||...|..+++|+-..||+++++|+.|+.||+..                                 
T Consensus       178 wDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~---------------------------------  224 (460)
T KOG0285|consen  178 WDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY---------------------------------  224 (460)
T ss_pred             EEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh---------------------------------
Confidence            34455566778999999999999999999999999999999999985                                 


Q ss_pred             eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCE
Q 005956          287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~  364 (667)
                                  .+.++.+.||-..|.+++.+|.- .|++|+.|.+++|||+++...+.++. |..+|..+.+.| .+..
T Consensus       225 ------------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpq  291 (460)
T KOG0285|consen  225 ------------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQ  291 (460)
T ss_pred             ------------hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCc
Confidence                        45688899999999999999987 99999999999999999999888885 999999999999 6678


Q ss_pred             EEEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956          365 FISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                      +++|+.|++|++||++.++.. ....|+..+.+++.+|....+|+++.| .|+-|++..+.....       ...|..-|
T Consensus       292 vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n-------lsgh~~ii  363 (460)
T KOG0285|consen  292 VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN-------LSGHNAII  363 (460)
T ss_pred             eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc-------ccccccee
Confidence            999999999999999998865 578889999999999999999998877 789999987765432       23345789


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeE---Ee---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKF---KG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~---~~---~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      .++....||  ++++|+.+|.|.+||.....  +..   ..   ......|.+.+|...|..|++|..|.+|++|.-+..
T Consensus       364 ntl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  364 NTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             eeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence            999999986  99999999999999976321  111   11   113457889999999999999999999999986543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.3e-25  Score=230.43  Aligned_cols=252  Identities=19%  Similarity=0.268  Sum_probs=213.4

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ....+.+.+.-..-+|.+.+|-+-.+++++|++|..|+||+..+                                    
T Consensus        43 etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------------------------------------   86 (794)
T KOG0276|consen   43 ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------------------------------------   86 (794)
T ss_pred             ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc------------------------------------
Confidence            34556677777888999999999999999999999999999987                                    


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-eEeEEee-CCCcEEEEEEeeCCCCEEE
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~d~~~l~  366 (667)
                               ...++.|..|.+-|.+++.+|.. +++|+|.|-+|++||.+.. .|.++|. |..+|.+++|+|.|.+.|+
T Consensus        87 ---------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa  157 (794)
T KOG0276|consen   87 ---------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA  157 (794)
T ss_pred             ---------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence                     35588999999999999999998 9999999999999999865 6778885 9999999999999999999


Q ss_pred             EEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCC--CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956          367 SGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg--~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                      +++.|++|++|.+.+..+. .+.+|...|+|++|-+.|  .+|++|+.|.++++||..+..+...       ...|...|
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-------LeGHt~Nv  230 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-------LEGHTNNV  230 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-------hhcccccc
Confidence            9999999999999876654 577899999999998855  5999999999999999998776543       23345789


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ..+.|+|. -.++++|+.||+++||+..+....-...-....+.+++-.+.+..|+.|.+.|.|.| .+...
T Consensus       231 s~v~fhp~-lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgre  300 (794)
T KOG0276|consen  231 SFVFFHPE-LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGRE  300 (794)
T ss_pred             eEEEecCC-CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCC
Confidence            99999998 589999999999999997654433333225678999999898889999988776643 44333

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=4.1e-26  Score=231.38  Aligned_cols=287  Identities=19%  Similarity=0.290  Sum_probs=210.5

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeee----------------eCCCC-CccccCCCCeEEe
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS----------------FTDDG-GFGSNAKEGKIKF  278 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~  278 (667)
                      -.|++|+..|.++++.|.|..|+||+.|-+|++||+.........                +++.+ .+++........+
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            457899999999999999999999999999999999865433322                22222 1222222222222


Q ss_pred             cccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe-EeEEee------CC
Q 005956          279 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVFD------HH  349 (667)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~-~~~~~~------h~  349 (667)
                      ++..+....-......+-   ..+..-+||...++|-+|+|..  .++|++.||++||||+...+ .+.++.      ..
T Consensus       241 ~DRdG~~~~e~~KGDQYI---~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYI---RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             EccCCceeeeeeccchhh---hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            222221111111111000   1123446999999999999987  89999999999999997653 344443      23


Q ss_pred             CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE----EecccCC--ceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV----DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (667)
Q Consensus       350 ~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~----~~~~~~~--~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~  423 (667)
                      -+++.++|+| +++.|++|..||.|.+|+.....+.    .-..|..  .|+||.|++||++|++-+.|+++++||++..
T Consensus       318 v~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  318 VPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             cCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            4789999999 9999999999999999998553321    1234544  7999999999999999999999999999987


Q ss_pred             cceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEe------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC
Q 005956          424 DLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITS------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK  496 (667)
Q Consensus       424 ~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~  496 (667)
                      +..+. ...+..     ..+-+.++|+|+. ++|++|.      ..|.+.+||..+....++..-....|..+.|+|.-+
T Consensus       397 kkpL~~~tgL~t-----~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN  470 (641)
T KOG0772|consen  397 KKPLNVRTGLPT-----PFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN  470 (641)
T ss_pred             ccchhhhcCCCc-----cCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence            76654 222322     2567889999995 7788775      346899999887777777665688899999999999


Q ss_pred             EEEEEeCCCcEEEEEc
Q 005956          497 HIISIGDDCRVYVWNY  512 (667)
Q Consensus       497 ~l~sgs~Dg~I~iWd~  512 (667)
                      .|+.|+.||.++||==
T Consensus       471 Qi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  471 QIFAGSGDGTAHVYYD  486 (641)
T ss_pred             heeeecCCCceEEEEC
Confidence            9999999999998843

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.3e-25  Score=213.93  Aligned_cols=310  Identities=18%  Similarity=0.242  Sum_probs=217.8

Q ss_pred             CCcchhHHhhcccccccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC---------------Cce
Q 005956          192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS---------------VAA  256 (667)
Q Consensus       192 ~~~~~~~~~~~~k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~---------------~~~  256 (667)
                      ++++..+.++.+++...|........|++|.+.|++|+|+.||++|||++.|++|+||++..               ..+
T Consensus        56 kkk~hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp  135 (420)
T KOG2096|consen   56 KKKKHQRNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP  135 (420)
T ss_pred             chhcccchhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc
Confidence            44455566777777778888888899999999999999999999999999999999999874               245


Q ss_pred             eeeeeCCCCC-ccc-cCCCCeEEecccC---CCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCC
Q 005956          257 SCKSFTDDGG-FGS-NAKEGKIKFGKKK---SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK  330 (667)
Q Consensus       257 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg  330 (667)
                      +.+.|.++.. ++. .....++..+...   .+....  +.    +.......-+.|.-.|..+-...++ +|++++.|.
T Consensus       136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~--~~----v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt  209 (420)
T KOG2096|consen  136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH--HF----VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT  209 (420)
T ss_pred             eEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc--cc----ccccccccchhcccceEEEeecCCceEEEEecCCC
Confidence            5667777763 222 2233333332211   111000  00    0001111223566777777776666 999999999


Q ss_pred             cEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC---C------eEEEecccCCceEEEEEe
Q 005956          331 TVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE---K------RVVDWADVRDVISAICYI  400 (667)
Q Consensus       331 ~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~---~------~~~~~~~~~~~v~~v~~s  400 (667)
                      +|.||++. |+.+..+. ....-+..+.+| +|+++++++...-|++|.+--   |      ++..+.+|...|..+||+
T Consensus       210 ~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs  287 (420)
T KOG2096|consen  210 KICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS  287 (420)
T ss_pred             cEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC
Confidence            99999999 88888775 444667788999 999999999999999998632   2      244678899999999999


Q ss_pred             eCCCEEEEEecCCcEEEEEecCCcceee---eEe-eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc--e
Q 005956          401 PDGKGFIVGSITGTCHFYKASGNDLKLE---KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--I  474 (667)
Q Consensus       401 pdg~~l~~gs~dg~i~l~d~~~~~~~~~---~~~-~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~  474 (667)
                      |+...+++.+.||++++||+.-.....+   .+. ........++.-..+.++|+|  .+++.+....+++|..++.  .
T Consensus       288 n~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s~gs~l~~~~se~g~~~  365 (420)
T KOG2096|consen  288 NSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVSFGSDLKVFASEDGKDY  365 (420)
T ss_pred             CCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC--cEEEeecCCceEEEEcccCccc
Confidence            9999999999999999999863211110   000 000011123344589999997  4455555677999986642  2


Q ss_pred             eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          475 HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       475 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ..+.. .|...|.+++|+++|+|+++++ |..+++..-.
T Consensus       366 ~~~e~-~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt  402 (420)
T KOG2096|consen  366 PELED-IHSTTISSISYSSDGKYIATCG-DRYVRVIRNT  402 (420)
T ss_pred             hhHHH-hhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence            22222 2889999999999999999998 7888887633

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=4e-25  Score=258.69  Aligned_cols=241  Identities=16%  Similarity=0.234  Sum_probs=198.4

Q ss_pred             ccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          221 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       221 H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +...|.+++|+| ++.+||+++.||+|+|||+.+                                             .
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------------------------------~  565 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------------------------------S  565 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------------------------------C
Confidence            346799999987 478999999999999999985                                             2


Q ss_pred             CcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      +.+..+.+|.+.|++++|+| ++ +|++|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.|+.|++|
T Consensus       566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iw  645 (793)
T PLN00181        566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYY  645 (793)
T ss_pred             eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence            34567789999999999997 55 89999999999999999999998888778899999976589999999999999999


Q ss_pred             ecCCCe--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee--e-eEeeccccCcCCCCeEEEEEccCC
Q 005956          378 GVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--E-KVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       378 dl~~~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~--~-~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      |++..+  ...+..|...|.++.|. ++.+|++++.|++|++||++......  . ...    ...|...+..+.|+|++
T Consensus       646 D~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~----~~gh~~~i~~v~~s~~~  720 (793)
T PLN00181        646 DLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS----FMGHTNVKNFVGLSVSD  720 (793)
T ss_pred             ECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE----EcCCCCCeeEEEEcCCC
Confidence            998765  34567788999999996 78899999999999999997532110  0 111    22345788999999996


Q ss_pred             CeEEEEEeCCCcEEEEECCcce--eeEE-----------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          453 SQRIMITSEDSKLRILDGVDVI--HKFK-----------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~--~~~~-----------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                       .+|++++.|+.|++|+.....  ..+.           ...+...|.+++|+|++.+|++|+.||.|+||++
T Consensus       721 -~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        721 -GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             -CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence             799999999999999965321  1111           1224567999999999999999999999999986

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.1e-25  Score=237.29  Aligned_cols=274  Identities=19%  Similarity=0.316  Sum_probs=225.0

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce---------eeeeeCCCC-CccccCCCCeEEecccCCCCc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA---------SCKSFTDDG-GFGSNAKEGKIKFGKKKSSHV  286 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  286 (667)
                      ++.+|...|.+++||.|...+++|+. +.|+||+..+..+         .+..|.|.+ ..+.+.+.|.+.+++..+.  
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--  444 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA--  444 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh--
Confidence            57799999999999999888888765 6799999997654         334455554 3344555566555544432  


Q ss_pred             eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-----C---eEe-----EEeeCCCcE
Q 005956          287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----N---QCL-----NVFDHHNYV  352 (667)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-----~---~~~-----~~~~h~~~V  352 (667)
                                   ..+.+...|.+.|++++.+||+ .+++||.|++|++||..-     +   +.+     +++...+.|
T Consensus       445 -------------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv  511 (888)
T KOG0306|consen  445 -------------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV  511 (888)
T ss_pred             -------------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccE
Confidence                         3355667999999999999999 999999999999999631     1   111     334467899


Q ss_pred             EEEEEeeCCCCEEEEEecCCeEEEEecCCCeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEe
Q 005956          353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  431 (667)
Q Consensus       353 ~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~  431 (667)
                      .|+.++| |+++|+.+-.|.+|++|-+.+-+. +.+.+|.-+|.|+.++||++.+++|+.|.+|++|-+.=+.+..    
T Consensus       512 L~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK----  586 (888)
T KOG0306|consen  512 LCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK----  586 (888)
T ss_pred             EEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh----
Confidence            9999999 999999999999999999999875 4688999999999999999999999999999999888666532    


Q ss_pred             eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                         ...+|...|.+++|.|. ...+++++.|+.|+-||..+........+|...|.+++.+|+|.|++++|.|..|++|.
T Consensus       587 ---S~fAHdDSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  587 ---SFFAHDDSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             ---hhhcccCceeEEEEccc-ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence               24456689999999997 58999999999999999887665555566999999999999999999999999999999


Q ss_pred             cCCC
Q 005956          512 YDEL  515 (667)
Q Consensus       512 ~~~~  515 (667)
                      ....
T Consensus       663 ~tde  666 (888)
T KOG0306|consen  663 RTDE  666 (888)
T ss_pred             ccCc
Confidence            8763

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=1.1e-26  Score=216.21  Aligned_cols=270  Identities=21%  Similarity=0.352  Sum_probs=230.5

Q ss_pred             eeeccccccEEEEEEcC---CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          216 QEIQAHKGCIWTLKFSP---DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fsp---dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ++..+|+.+|..++|||   +|-+|++++.||.-.+-+-+++                                      
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--------------------------------------   49 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--------------------------------------   49 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--------------------------------------
Confidence            45679999999999985   8889999999997666554442                                      


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                             .=+.+|.||.+.|+..+...+. +.++++.|-+.+|||.-+|..+..|.|..-|..++|+. |.++|++|+.+
T Consensus        50 -------dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~-ds~~lltgg~e  121 (334)
T KOG0278|consen   50 -------DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQ-DSNYLLTGGQE  121 (334)
T ss_pred             -------CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecc-cchhhhccchH
Confidence                   3378899999999999999888 88899999999999999999999999999999999999 99999999999


Q ss_pred             CeEEEEecCCCe--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          372 GKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       372 g~v~iwdl~~~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      ..+||||++..+  +..+.+|.+.|..+.|....+.|++.+.|++||+||.+++..... +.+       ..+|+++..+
T Consensus       122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s-L~~-------~s~VtSlEvs  193 (334)
T KOG0278|consen  122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS-LEF-------NSPVTSLEVS  193 (334)
T ss_pred             HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE-Eec-------CCCCcceeec
Confidence            999999998754  556889999999999999999999999999999999999876543 222       2679999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc--ccccC
Q 005956          450 RDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--KQKNS  525 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~--~~~~~  525 (667)
                      ++|  .+++....+.|.+||....  +..++   -...|.+++++|+...+++|++|..++.||+.+++..-.  .....
T Consensus       194 ~dG--~ilTia~gssV~Fwdaksf~~lKs~k---~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g  268 (334)
T KOG0278|consen  194 QDG--RILTIAYGSSVKFWDAKSFGLLKSYK---MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG  268 (334)
T ss_pred             cCC--CEEEEecCceeEEeccccccceeecc---CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence            997  6778888889999997643  33333   356789999999999999999999999999999987554  45567


Q ss_pred             ccceeEEccCCcEEEEecC
Q 005956          526 VRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       526 ~~~~~~fs~dg~~lav~w~  544 (667)
                      .+-|+.|+|||...|..+.
T Consensus       269 pVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  269 PVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             ceEEEEECCCCceeeccCC
Confidence            7889999999998877433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-25  Score=240.62  Aligned_cols=244  Identities=22%  Similarity=0.439  Sum_probs=205.1

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ...+..|.|+|..++|+|.+.++++||+|-.|+||+..+                                         
T Consensus        44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-----------------------------------------   82 (1202)
T KOG0292|consen   44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-----------------------------------------   82 (1202)
T ss_pred             HhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-----------------------------------------
Confidence            345678999999999999999999999999999999985                                         


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                          .+++.++.||-+.|..+.|++.- .++++|.|.||+||+..+++|+.++. |..+|.|.+|+| ....++++|.|.
T Consensus        83 ----rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQ  157 (1202)
T KOG0292|consen   83 ----RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQ  157 (1202)
T ss_pred             ----ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccc
Confidence                46688899999999999999988 99999999999999999999999885 999999999999 899999999999


Q ss_pred             eEEEEecCCCe----------------------------EEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC
Q 005956          373 KVRIWGVCEKR----------------------------VVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (667)
Q Consensus       373 ~v~iwdl~~~~----------------------------~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~  422 (667)
                      +||+||+..-+                            +++  +.+|...|+-++|+|.-..|++|+.|..|++|.++.
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence            99999985310                            111  446778899999999999999999999999999875


Q ss_pred             CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956          423 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIIS  500 (667)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~s  500 (667)
                      .+. .   .. .....|.+.|.++-|+|. ..++++.+.|+.|+|||+.+  .++.|+.  .......++.+|..+++++
T Consensus       238 tKa-W---Ev-DtcrgH~nnVssvlfhp~-q~lIlSnsEDksirVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAA  309 (1202)
T KOG0292|consen  238 TKA-W---EV-DTCRGHYNNVSSVLFHPH-QDLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAA  309 (1202)
T ss_pred             ccc-e---ee-hhhhcccCCcceEEecCc-cceeEecCCCccEEEEecccccceeeeec--cCCeEEEEEecCCcceeee
Confidence            432 1   11 124456799999999997 47999999999999999874  4555554  5677888999999888777


Q ss_pred             EeCCCcEEEEEcC
Q 005956          501 IGDDCRVYVWNYD  513 (667)
Q Consensus       501 gs~Dg~I~iWd~~  513 (667)
                      |- |+-+.||.++
T Consensus       310 gH-DsGm~VFkle  321 (1202)
T KOG0292|consen  310 GH-DSGMIVFKLE  321 (1202)
T ss_pred             ec-CCceEEEEEc
Confidence            65 4445556554

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=1.6e-24  Score=236.04  Aligned_cols=258  Identities=17%  Similarity=0.208  Sum_probs=192.1

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      |-..|....+++|+..+++++.+.....|+...+.. .+.....+                              .+. .
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-v~~~~~~G------------------------------~~~-~   66 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-VLKHTDYG------------------------------KLA-S   66 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceE-Eeeccccc------------------------------cCC-C
Confidence            455677777888988889999999999998764211 00000000                              000 1


Q ss_pred             cceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCe-------EeEEe-eCCCcEEEEEEeeCCCCEEEEEec
Q 005956          301 PLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~-------~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                      ....+.+|.+.|++++|+| ++ +|++|+.|++|+|||+.++.       ++..+ .|...|.+++|+|..+++|++|+.
T Consensus        67 ~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         67 NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            1234789999999999999 66 99999999999999997652       34444 499999999999944579999999


Q ss_pred             CCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      |++|+|||+.+++... +..|...|.+++|+|+|+.|++++.||.|++||+++++.... +..+.     ...+..+.|.
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H~-----~~~~~~~~w~  220 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAHA-----SAKSQRCLWA  220 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecCC-----CCcceEEEEc
Confidence            9999999999987664 556888999999999999999999999999999998765332 22221     1334577888


Q ss_pred             cCCCeEEEEEe----CCCcEEEEECCcceeeEEe--CCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956          450 RDESQRIMITS----EDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  517 (667)
Q Consensus       450 p~g~~~l~~~s----~dg~I~iwd~~~~~~~~~~--~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~  517 (667)
                      +++ ..+++++    .|+.|++||+++....+..  ......+....|++++++|++++ .|+.|++||+.++..
T Consensus       221 ~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        221 KRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             CCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence            886 4555543    4789999998754332222  12334566677899999999887 599999999998764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.2e-26  Score=229.81  Aligned_cols=251  Identities=20%  Similarity=0.397  Sum_probs=210.9

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ..+.+|.+.|..+.|-++...|+|||.|..|++|++....                                        
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k----------------------------------------  208 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK----------------------------------------  208 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch----------------------------------------
Confidence            4567899999999999998899999999999999987521                                        


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                         ...+.++.|..+.|+++.|.+++ ++++++.|+.+++|++...+...++. |.+.|+++.|.. ....+++|+.|.+
T Consensus       209 ---~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRt  284 (459)
T KOG0288|consen  209 ---SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRT  284 (459)
T ss_pred             ---hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccch
Confidence               12466788888999999999988 99999999999999999999888874 999999999998 5556999999999


Q ss_pred             EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       374 v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      |++||+....+.........+..|+.+  +..+++|-.|++|++||.++...... +.+       ++.|+++..++++ 
T Consensus       285 iK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s-v~~-------gg~vtSl~ls~~g-  353 (459)
T KOG0288|consen  285 IKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS-VPL-------GGRVTSLDLSMDG-  353 (459)
T ss_pred             hhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeE-eec-------CcceeeEeeccCC-
Confidence            999999998877766666667777766  56788899999999999998776543 222       3689999999996 


Q ss_pred             eEEEEEeCCCcEEEEECCc--ceeeEEe--CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956          454 QRIMITSEDSKLRILDGVD--VIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~--~~~~~~~--~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~  521 (667)
                      ..|++++.|.++.+.|++.  ..+.+..  .......+.+.|||++.|+++||.||.|+||++.++++....
T Consensus       354 ~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  354 LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence            7888889999999999874  4445543  223455889999999999999999999999999999875443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-25  Score=226.40  Aligned_cols=247  Identities=21%  Similarity=0.347  Sum_probs=207.6

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      ++.-.+..|.++.|-.||++||+|.+.|.|+|+|..+                                           
T Consensus        63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-------------------------------------------   99 (487)
T KOG0310|consen   63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-------------------------------------------   99 (487)
T ss_pred             hHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-------------------------------------------
Confidence            3445677899999999999999999999999999653                                           


Q ss_pred             ccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                        ...+..+.+|+.+|..+.|+|++  .|++|+.|+.+++||+.+......+ .|+++|.|.+|+|.++.++++|+.||+
T Consensus       100 --r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~  177 (487)
T KOG0310|consen  100 --RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK  177 (487)
T ss_pred             --HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence              23467888999999999999977  8889999999999999998864344 599999999999988889999999999


Q ss_pred             EEEEecCCC-eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          374 VRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       374 v~iwdl~~~-~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      |++||++.. ..+...+|..+|..+.+-|.|..|++++. ..+++||+.++.....      ....|...|||+.+..++
T Consensus       178 vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~------~~~~H~KtVTcL~l~s~~  250 (487)
T KOG0310|consen  178 VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT------SMFNHNKTVTCLRLASDS  250 (487)
T ss_pred             EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh------hhhcccceEEEEEeecCC
Confidence            999999987 66677889999999999999999998764 4899999995554332      122256889999999985


Q ss_pred             CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                       ..|++++-|+.|++||+.+....... ...++|.+++.+|+++.++.|..||.+.+=+....+.
T Consensus       251 -~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k  313 (487)
T KOG0310|consen  251 -TRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK  313 (487)
T ss_pred             -ceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence             89999999999999997655444333 3678999999999999999999999888775554443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=5.3e-26  Score=225.36  Aligned_cols=245  Identities=19%  Similarity=0.266  Sum_probs=211.4

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ...+|.+-.++|+++.|.++++++++++.|+.+++|++..                                        
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~----------------------------------------  250 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS----------------------------------------  250 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc----------------------------------------
Confidence            4567788899999999999999999999999999999986                                        


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                           .....+|.||++.|+++.|.... .+++|+.|.+|++||+....|.+++-....+..|..+   ...+++|..|+
T Consensus       251 -----~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~Dk  322 (459)
T KOG0288|consen  251 -----LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDK  322 (459)
T ss_pred             -----hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeeccccc
Confidence                 35578899999999999999877 6999999999999999999999998777777777775   46799999999


Q ss_pred             eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      +|++||+++..........+.|+++..+++|..+++.+.|.++.+.|+++...... +...+-+.  ....+.++|+|++
T Consensus       323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~-~sA~g~k~--asDwtrvvfSpd~  399 (459)
T KOG0288|consen  323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT-FSAEGFKC--ASDWTRVVFSPDG  399 (459)
T ss_pred             ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE-eecccccc--ccccceeEECCCC
Confidence            99999999999998888888999999999999999999999999999998776543 22222222  2448999999996


Q ss_pred             CeEEEEEeCCCcEEEEECCcceeeEEeCCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSG--SQMSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~--~v~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                       .|+++|+.||.|+||++........+.....  .|++++|+|.|.+|++++.++.+.+|
T Consensus       400 -~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  400 -SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence             8999999999999999875554444432333  59999999999999999999999999

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.2e-24  Score=234.80  Aligned_cols=251  Identities=16%  Similarity=0.214  Sum_probs=187.7

Q ss_pred             eeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          217 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       217 ~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .+.+|.+.|++++|+| ++++||+|+.||+|+|||+.+.....                                     
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-------------------------------------  112 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-------------------------------------  112 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-------------------------------------
Confidence            4679999999999999 88999999999999999997521100                                     


Q ss_pred             cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                       ....++..+.+|...|.+++|+|++  +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|+
T Consensus       113 -~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg  190 (493)
T PTZ00421        113 -NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDK  190 (493)
T ss_pred             -ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCC
Confidence             0124577889999999999999974  89999999999999999999888875 889999999999 999999999999


Q ss_pred             eEEEEecCCCeEEE-ecccCCc-eEEEEEeeCCCEEEEEe----cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          373 KVRIWGVCEKRVVD-WADVRDV-ISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       373 ~v~iwdl~~~~~~~-~~~~~~~-v~~v~~spdg~~l~~gs----~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      +|++||+++++.+. ...|.+. +..+.|.+++..+++++    .|+.|++||++.............     ...+...
T Consensus       191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-----~~~~~~~  265 (493)
T PTZ00421        191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-----SSALFIP  265 (493)
T ss_pred             EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-----CCceEEE
Confidence            99999999988664 4455443 45677888887777654    478999999987654433222221     2456667


Q ss_pred             EEccCCCeEEEEEe-CCCcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          447 QFSRDESQRIMITS-EDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       447 ~~sp~g~~~l~~~s-~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      .|++++ .+|++++ .|+.|++||+.+....+.. .....++..++|.|.-..=+.  .--..++|.+..
T Consensus       266 ~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~--~~Ei~r~~~l~~  332 (493)
T PTZ00421        266 FFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTR--KCEIARFYALTY  332 (493)
T ss_pred             EEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccccccc--ceeeeEEEEecC
Confidence            789986 5666666 6999999998754333222 224556788888885322111  112346666643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.8e-24  Score=199.68  Aligned_cols=205  Identities=22%  Similarity=0.437  Sum_probs=171.9

Q ss_pred             cceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCC---CeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          301 PLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC---NQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~---~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                      .++.+.+|++.|..++|+|- | .|++|+.|+.|+||+...   -.|...+  .|+..|..++|+| .+++|++|+.|.+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t   84 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT   84 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccce
Confidence            36778899999999999998 6 899999999999999984   3455555  3999999999999 9999999999999


Q ss_pred             EEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          374 VRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       374 v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      +.||.-..+..   -.+.+|...|.+++|+++|++||+++.|..+-||.+..... ..   ...-...|...|..+.|+|
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fe---c~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FE---CIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EE---EEeeeccccccccEEEEcC
Confidence            99998776543   34778999999999999999999999999999999984332 22   1111334467899999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECC---c--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          451 DESQRIMITSEDSKLRILDGV---D--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~---~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      .. .+|++++.|++|++|+-.   +  +.+++.+  |...|.+++|++.|..|+++++|++|+||..-
T Consensus       161 t~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  161 TE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             Cc-ceeEEeccCCeEEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            73 699999999999999744   2  3445544  78899999999999999999999999999865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=7.8e-24  Score=223.52  Aligned_cols=230  Identities=19%  Similarity=0.330  Sum_probs=189.2

Q ss_pred             eeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      .++.||...|.+++++.+..++.++..+.|+||+..+.+|++++... ++.+..|-| .++++++|...|.+.+||+...
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence            45679999999999999996666666679999999999999999765 899999999 9999999999999999999998


Q ss_pred             eEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc----eeeeEeecc-ccCcCCCCeEEEEEccCCCeEE
Q 005956          383 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHD-RKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       383 ~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~----~~~~~~~~~-~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                      .++. ...|.+.|..++.+||++.+++|+.|.+|++||..-..-    +...+.++. +...-...|.++.+|||| .+|
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~L  523 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLL  523 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEE
Confidence            8765 567999999999999999999999999999999752111    000111111 111234789999999996 899


Q ss_pred             EEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccC
Q 005956          457 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSE  535 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~d  535 (667)
                      +++=-|++++||-+.+....+...+|.-+|.++.+|||++.|+|||.|.+|+||-++-|.+.... .+...+.++.|-|+
T Consensus       524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~  603 (888)
T KOG0306|consen  524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK  603 (888)
T ss_pred             EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc
Confidence            99999999999998888777788889999999999999999999999999999999988875443 23334445566553

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=6e-24  Score=232.47  Aligned_cols=228  Identities=16%  Similarity=0.210  Sum_probs=167.9

Q ss_pred             CcceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCCCe--------EeEEe-eCCCcEEEEEEeeCCCC-EEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ--------CLNVF-DHHNYVTCVQFNPIDDN-YFIS  367 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~--------~~~~~-~h~~~V~~l~f~p~d~~-~l~s  367 (667)
                      .++..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++.        ++..+ .|...|.+++|+| ++. +|++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaS  143 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCS  143 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEE
Confidence            346778899999999999996 4 99999999999999997642        22333 4889999999999 565 5678


Q ss_pred             EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe----
Q 005956          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI----  443 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I----  443 (667)
                      ++.|++|+|||+++++......+...|.+++|+|+|+.|++++.|+.|+|||++++..... +  .+|    .+.+    
T Consensus       144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t-l--~gH----~g~~~s~~  216 (568)
T PTZ00420        144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS-F--HIH----DGGKNTKN  216 (568)
T ss_pred             EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE-E--ecc----cCCceeEE
Confidence            9999999999999988665445678899999999999999999999999999998765432 2  222    2322    


Q ss_pred             -EEEEEccCCCeEEEEEeCCC----cEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          444 -TGIQFSRDESQRIMITSEDS----KLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       444 -~~l~~sp~g~~~l~~~s~dg----~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                       ....|++++ .+|++++.++    +|+|||++.   .+..+....+.+.+......++|.++++|+.|+.|++|++..+
T Consensus       217 v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        217 IWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence             223456775 6788877664    799999874   3444444334444444445667999999999999999999876


Q ss_pred             Ccccc--ccccCccceeEEccCC
Q 005956          516 CFPSS--KQKNSVRSCEHFFSEG  536 (667)
Q Consensus       516 ~~~~~--~~~~~~~~~~~fs~dg  536 (667)
                      .....  .........++|.|+-
T Consensus       296 ~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        296 SIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             cEEeecccccCCCccceEEcccc
Confidence            43222  1222333445666643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=4.7e-26  Score=211.90  Aligned_cols=245  Identities=18%  Similarity=0.271  Sum_probs=207.4

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      -++.+|+++||...++.+...-|+++.|-+-+|||..++                                         
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg-----------------------------------------   91 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG-----------------------------------------   91 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh-----------------------------------------
Confidence            467899999999999999999999999999999998863                                         


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                          ..++.| .|..-|.+++|+.|. +|++|+.++.+||||++..+ +...+ +|...|..+.|.. .++.|++.+.|+
T Consensus        92 ----delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~  165 (334)
T KOG0278|consen   92 ----DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDK  165 (334)
T ss_pred             ----hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCC
Confidence                234444 488899999999988 99999999999999997654 33334 5999999999999 888999999999


Q ss_pred             eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      +||+||.+++..++....+..|+++.++++|++|.++ ..+.|.+||..+..+... ..       ....|.+..++|+ 
T Consensus       166 tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs-~k-------~P~nV~SASL~P~-  235 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKS-YK-------MPCNVESASLHPK-  235 (334)
T ss_pred             ceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceee-cc-------CccccccccccCC-
Confidence            9999999999999999999999999999999776654 567899999988766432 22       2367999999998 


Q ss_pred             CeEEEEEeCCCcEEEEECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          453 SQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      ...+++|+.|..++.||..+....-. ..+|.++|.++.|+|+|...++||+||+|+||....++.
T Consensus       236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            48999999999999999775433322 245899999999999999999999999999999876653

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=5.1e-24  Score=232.98  Aligned_cols=238  Identities=16%  Similarity=0.229  Sum_probs=180.8

Q ss_pred             ceeeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          215 SQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ...+.+|.+.|++++|+|+ +.+||||+.||+|+|||+.+.....                                   
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~-----------------------------------  111 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV-----------------------------------  111 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc-----------------------------------
Confidence            4568899999999999997 7899999999999999997521100                                   


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                        .....++..+.+|...|.+++|+|++  .|++++.|++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.|
T Consensus       112 --~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D  188 (568)
T PTZ00420        112 --KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVG  188 (568)
T ss_pred             --cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecC
Confidence              00013456788999999999999988  56799999999999999998887777888999999999 99999999999


Q ss_pred             CeEEEEecCCCeEEE-ecccCCceEEE-----EEeeCCCEEEEEecCC----cEEEEEecCCcceeeeEeeccccCcCCC
Q 005956          372 GKVRIWGVCEKRVVD-WADVRDVISAI-----CYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       372 g~v~iwdl~~~~~~~-~~~~~~~v~~v-----~~spdg~~l~~gs~dg----~i~l~d~~~~~~~~~~~~~~~~~~~~~~  441 (667)
                      +.|+|||+++++.+. +..|.+.+.+.     .|++++.+|++++.++    .|+|||++........+.+...    .+
T Consensus       189 ~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~----~~  264 (568)
T PTZ00420        189 KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA----SA  264 (568)
T ss_pred             CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC----cc
Confidence            999999999988764 55666554332     3458889999887664    7999999964443333333221    23


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCC
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTG  495 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg  495 (667)
                      .+...-..++ +.++++|+.|+.|++|++... ...+....+..++.+++|.|..
T Consensus       265 ~L~p~~D~~t-g~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        265 PLIPHYDEST-GLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ceEEeeeCCC-CCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence            3333333444 478899999999999998633 3333444466788899999974

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.7e-24  Score=217.66  Aligned_cols=290  Identities=19%  Similarity=0.258  Sum_probs=228.5

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.+..|.-+|++|+++||+++.++++.||+|.=|++.++....-....+                            .+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~----------------------------ev  186 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD----------------------------EV  186 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc----------------------------hh
Confidence            45677899999999999999999999999999999998754321100000                            00


Q ss_pred             ccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956          295 FQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       295 ~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                      ......+...- .+|...|.+++.++|| +|++|+.|..|.||+.++.+.++.+. |.+.|.+++|-. ..+.+++++.|
T Consensus       187 ~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~D  265 (479)
T KOG0299|consen  187 LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASAD  265 (479)
T ss_pred             hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecC
Confidence            00011222222 4899999999999999 99999999999999999999999975 999999999998 88899999999


Q ss_pred             CeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          372 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       372 g~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      .+|++|++.....+ .+.+|++.|..+....-++.+-+|+.|.++++|++......    .    +..+.+.+-|++|-.
T Consensus       266 rsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql----i----frg~~~sidcv~~In  337 (479)
T KOG0299|consen  266 RSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL----I----FRGGEGSIDCVAFIN  337 (479)
T ss_pred             CceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee----e----eeCCCCCeeeEEEec
Confidence            99999999987766 48899999999999888889999999999999999543221    1    223357899999988


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcce--eeEEeC----------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956          451 DESQRIMITSEDSKLRILDGVDVI--HKFKGL----------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~----------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      +  .++++|+.+|.|.+|++.+..  ......          .+...|++++..|...++|+|+.+|.|++|-+.++...
T Consensus       338 ~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  338 D--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             c--cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence            7  599999999999999976432  222221          11237899999999999999999999999999988432


Q ss_pred             cc----ccccCccceeEEccCCcEEEEec
Q 005956          519 SS----KQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       519 ~~----~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      ..    ......++.++|+++|..+.++-
T Consensus       416 i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  416 INLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             cceeeecccccEEEEEEEccCCCEEEEec
Confidence            21    23445566788999999777763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=5e-26  Score=222.01  Aligned_cols=295  Identities=18%  Similarity=0.283  Sum_probs=197.2

Q ss_pred             ccccccccccccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEeccc
Q 005956          203 KKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK  281 (667)
Q Consensus       203 ~k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (667)
                      .|-..-|.+.+..+ |.+|.+.|.|++=+|.. ..+|||+.||.|+|||+....+....-...|.+ -+     +.+.. 
T Consensus        48 tKleR~fakPFv~~-L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V-~G-----i~v~~-  119 (433)
T KOG0268|consen   48 TKLERVFAKPFVGS-LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLV-RG-----ICVTQ-  119 (433)
T ss_pred             HHHHHHhhccchhh-ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCce-ee-----EEecc-
Confidence            33333445555544 58999999999999987 789999999999999998632211111111000 00     00000 


Q ss_pred             CCCCceeecC--CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEE
Q 005956          282 KSSHVPVVIP--DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQF  357 (667)
Q Consensus       282 ~~~~~~~~~~--~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f  357 (667)
                       .....+.-.  -+.|.+...+++++.+. ..++.|.-+..+ .++|||.+  |-|||.....+++.+. ..+.|.++.|
T Consensus       120 -~~~~tvgdDKtvK~wk~~~~p~~tilg~-s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkf  195 (433)
T KOG0268|consen  120 -TSFFTVGDDKTVKQWKIDGPPLHTILGK-SVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKF  195 (433)
T ss_pred             -cceEEecCCcceeeeeccCCcceeeecc-ccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEec
Confidence             000000000  01122222333333321 223333333222 44444432  4455555445555554 4567899999


Q ss_pred             eeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956          358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  437 (667)
Q Consensus       358 ~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~  437 (667)
                      +|....+|++|..|+.|.+||++++.++...-....-+.+||+|.+-.+++|..|-.++.||++....+...      ..
T Consensus       196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v------~~  269 (433)
T KOG0268|consen  196 NPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV------HK  269 (433)
T ss_pred             CCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchh------hc
Confidence            998888999999999999999999998876666677889999998888999999999999999976654432      34


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      .|...|.++.|+|.| +.+++||.|.+|+||..+.....-.- ......|.++.||.|.+||++||+|+.|++|.....+
T Consensus       270 dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             ccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            456899999999997 89999999999999997643221111 1135679999999999999999999999999876544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=5.1e-24  Score=212.38  Aligned_cols=269  Identities=17%  Similarity=0.249  Sum_probs=218.0

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      .-.|+++...|....++|||.|..+.++|...                                             ++.
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s---------------------------------------------~q~  253 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPS---------------------------------------------NQI  253 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecch---------------------------------------------hhh
Confidence            35688999998878999999999999999875                                             456


Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      +..|.||...|+.+.|+++. .+++++.|..|+||.+....+.... .|..+|+.+..+| ++.||++++.|++..+.|+
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~  332 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDI  332 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEc
Confidence            78899999999999999998 8999999999999999877665555 4999999999999 9999999999999999999


Q ss_pred             CCCeEEEecccC---CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          380 CEKRVVDWADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       380 ~~~~~~~~~~~~---~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                      +++..+....+.   -.+++.+|+|||..|.+|+.||.++|||+.......       +...|.++|..++|+.+| ++|
T Consensus       333 ~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a-------~Fpght~~vk~i~FsENG-Y~L  404 (506)
T KOG0289|consen  333 SSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA-------KFPGHTGPVKAISFSENG-YWL  404 (506)
T ss_pred             cCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc-------cCCCCCCceeEEEeccCc-eEE
Confidence            999877644443   458999999999999999999999999998766332       134467999999999996 999


Q ss_pred             EEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC--cccccccc-CccceeE
Q 005956          457 MITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC--FPSSKQKN-SVRSCEH  531 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~--~~~~~~~~-~~~~~~~  531 (667)
                      +++..|+.|++||+++..  .++... ....+.+++|.+.|.||+.++.|=.|++++-.+..  +....+.. ...+.+.
T Consensus       405 at~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~  483 (506)
T KOG0289|consen  405 ATAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVR  483 (506)
T ss_pred             EEEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceee
Confidence            999999999999998543  444443 33479999999999999999877666666533321  11112222 3556678


Q ss_pred             EccCCcEEEEecCC
Q 005956          532 FFSEGVSVAVQWPG  545 (667)
Q Consensus       532 fs~dg~~lav~w~~  545 (667)
                      |..+.++++....+
T Consensus       484 Fg~~aq~l~s~smd  497 (506)
T KOG0289|consen  484 FGEHAQYLASTSMD  497 (506)
T ss_pred             ecccceEEeeccch
Confidence            88888888775443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.5e-24  Score=226.38  Aligned_cols=240  Identities=22%  Similarity=0.356  Sum_probs=202.2

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      +...|+++.|+++|.+||.|..+|.|.|||+.+                                             .+
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~---------------------------------------------~k  250 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE---------------------------------------------QK  250 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhh---------------------------------------------cc
Confidence            488999999999999999999999999999985                                             34


Q ss_pred             cceeeec-cccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE-e-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          301 PLQELHG-HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       301 ~~~~l~g-h~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~-~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      .+..+.+ |...|-+++|. ...+.+|+.|+.|..+|+...+.... + .|...|..+.|++ +++++++|+.|+.+.||
T Consensus       251 ~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iw  328 (484)
T KOG0305|consen  251 KTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIW  328 (484)
T ss_pred             ccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEec
Confidence            4566666 99999999999 44899999999999999988765444 4 4999999999999 99999999999999999


Q ss_pred             ecCCCe-EEEecccCCceEEEEEee-CCCEEEEE--ecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          378 GVCEKR-VVDWADVRDVISAICYIP-DGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       378 dl~~~~-~~~~~~~~~~v~~v~~sp-dg~~l~~g--s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      |..... ...+..|...|.+++|+| ....||+|  +.|+.|++||..++.....        ...+..|+++.|++...
T Consensus       329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~--------vdtgsQVcsL~Wsk~~k  400 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS--------VDTGSQVCSLIWSKKYK  400 (484)
T ss_pred             cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc--------cccCCceeeEEEcCCCC
Confidence            996544 456889999999999999 55677875  4799999999997765432        12247899999999864


Q ss_pred             eEEEEE-eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          454 QRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       454 ~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      .++.+. ..++.|.||+...........+|...|..++++|||..|++|+.|.++++|++-+.
T Consensus       401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            444443 45679999998866655555669999999999999999999999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=3.5e-24  Score=210.50  Aligned_cols=261  Identities=21%  Similarity=0.342  Sum_probs=211.3

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      -|.+-|.++...  +++|+||+.||.++|||..                                              +
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~----------------------------------------------G  134 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK----------------------------------------------G  134 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC----------------------------------------------C
Confidence            489999999988  6799999999999999987                                              3


Q ss_pred             CcceeeeccccceEEEEecCCC----eEEEEeCCCcEEEEecCCCeEeEE-----eeCCCcEEEEEEeeCCCCEEEEEec
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN----YLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~----~l~s~s~Dg~I~iWd~~~~~~~~~-----~~h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                      +....+.||.++|.+++|...+    .|++++.|.++++|.++.+.....     -+|...|-++...+ ++..+++|+.
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~  213 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSW  213 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecc
Confidence            6678889999999999986432    699999999999999887653221     26999999999999 9999999999


Q ss_pred             CCeEEEEecCCC--------------------------eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCc
Q 005956          371 DGKVRIWGVCEK--------------------------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (667)
Q Consensus       371 Dg~v~iwdl~~~--------------------------~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~  424 (667)
                      |..|.||+....                          .++.+.+|...|.++.|++ ...+++++.|.+|+.||+.++.
T Consensus       214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence            999999993210                          1335678999999999987 6789999999999999999888


Q ss_pred             ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCCCE-EEE
Q 005956          425 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKH-IIS  500 (667)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg~~-l~s  500 (667)
                      ......        .+..++++.++|. ..+|++|+.|..|++||.+.   .+...+..+|...|.++.|+|...| |++
T Consensus       293 ~~~~~~--------~~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  293 LKSTLT--------TNKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             ceeeee--------cCcceeEeecccc-cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence            764321        2378999999997 58999999999999999774   2333344448889999999998765 789


Q ss_pred             EeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCCc
Q 005956          501 IGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT  548 (667)
Q Consensus       501 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~  548 (667)
                      |+.|+++++||+.....+...-.         -.+.++|++.|+..+.
T Consensus       364 ~S~D~t~klWDvRS~k~plydI~---------~h~DKvl~vdW~~~~~  402 (423)
T KOG0313|consen  364 GSYDNTVKLWDVRSTKAPLYDIA---------GHNDKVLSVDWNEGGL  402 (423)
T ss_pred             EecCCeEEEEEeccCCCcceeec---------cCCceEEEEeccCCce
Confidence            99999999999998764332111         1167889999987753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=2.7e-24  Score=216.42  Aligned_cols=255  Identities=20%  Similarity=0.326  Sum_probs=205.8

Q ss_pred             cccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          220 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      -|.+.|+.+.+-|... .+||++..+.|.|||...........                                   -+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-----------------------------------~~  166 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-----------------------------------GE  166 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-----------------------------------cc
Confidence            5999999999999654 77788889999999998632111000                                   02


Q ss_pred             CCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE-------eEEe-eCCCcEEEEEEeeCCCCEEEEE
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~-------~~~~-~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                      ..|-..+.||...-.+|+|++..  .|++++.|++|++||+.....       ...+ .|...|..++|++.+.++|+++
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv  246 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV  246 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence            35667889999988999999865  999999999999999964322       2333 4999999999999999999999


Q ss_pred             ecCCeEEEEecCC--CeEE-EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          369 SIDGKVRIWGVCE--KRVV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       369 s~Dg~v~iwdl~~--~~~~-~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      +.|+.+.|||+++  .+.. ....|...|+|++|+| ++..||+|+.|++|.+||+++.......      ...|...|.
T Consensus       247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~------~e~H~dev~  320 (422)
T KOG0264|consen  247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT------FEGHEDEVF  320 (422)
T ss_pred             cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee------ccCCCcceE
Confidence            9999999999995  3333 3567889999999999 6678889999999999999987764432      233458999


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcc--------------eeeEEeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEE
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDV--------------IHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYV  509 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--------------~~~~~~~~~~~~v~~v~~spdg~~-l~sgs~Dg~I~i  509 (667)
                      .+.|+|.....|++++.|+.+.|||+.+.              ...|.-.+|...|..++|+|+..+ |+++++|+.+.|
T Consensus       321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI  400 (422)
T KOG0264|consen  321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI  400 (422)
T ss_pred             EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence            99999998889999999999999997532              123555568999999999999876 567889999999


Q ss_pred             EEcCCC
Q 005956          510 WNYDEL  515 (667)
Q Consensus       510 Wd~~~~  515 (667)
                      |.....
T Consensus       401 W~~s~~  406 (422)
T KOG0264|consen  401 WQMAEN  406 (422)
T ss_pred             eecccc
Confidence            998754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.5e-24  Score=216.98  Aligned_cols=271  Identities=15%  Similarity=0.199  Sum_probs=213.8

Q ss_pred             ccccEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          221 HKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       221 H~~~I~~v~fspdg~~-Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      ...+|.+++|||...| +|+++. -.+.||+..+                                             .
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~---------------------------------------------~   58 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT---------------------------------------------R   58 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecch---------------------------------------------h
Confidence            3467999999996653 444333 4688998775                                             2


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      ....++......|.++.|-.|| +|++|...|.|+|+|+.+...++.+. |+.+|..+.|+|.++..|++|+.|+.+++|
T Consensus        59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~  138 (487)
T KOG0310|consen   59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW  138 (487)
T ss_pred             hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence            3345556677889999999999 88888899999999977766666664 999999999999888899999999999999


Q ss_pred             ecCCCeEE-EecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          378 GVCEKRVV-DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       378 dl~~~~~~-~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      |+.+..+. ...+|.+.|.|.+|+|- +..+++|+.||.|++||++......  ..     ..|+.+|..+.+-|.| ..
T Consensus       139 d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v--~e-----lnhg~pVe~vl~lpsg-s~  210 (487)
T KOG0310|consen  139 DLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV--VE-----LNHGCPVESVLALPSG-SL  210 (487)
T ss_pred             EcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee--EE-----ecCCCceeeEEEcCCC-CE
Confidence            99998865 57899999999999995 5588899999999999999875222  22     2345899999999986 45


Q ss_pred             EEEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEcc
Q 005956          456 IMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS  534 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~  534 (667)
                      +++++ .+.|+|||+...-+.. ....|...|+|+++..++..|++|+-|+.|+|||+.+-+....-.-...+-.+..+|
T Consensus       211 iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~  289 (487)
T KOG0310|consen  211 IASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP  289 (487)
T ss_pred             EEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC
Confidence            55544 4689999987433333 333389999999999999999999999999999988776554444344455568999


Q ss_pred             CCcEEEEecCCC
Q 005956          535 EGVSVAVQWPGI  546 (667)
Q Consensus       535 dg~~lav~w~~~  546 (667)
                      |++.++++-...
T Consensus       290 dd~t~viGmsnG  301 (487)
T KOG0310|consen  290 DDQTVVIGMSNG  301 (487)
T ss_pred             CCceEEEecccc
Confidence            999999976544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.9e-24  Score=196.98  Aligned_cols=245  Identities=19%  Similarity=0.278  Sum_probs=199.8

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      -.+.+++.+|...|..++.+.|...|++||.|..|.+||+.++                                     
T Consensus        49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG-------------------------------------   91 (307)
T KOG0316|consen   49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG-------------------------------------   91 (307)
T ss_pred             cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC-------------------------------------
Confidence            3456788999999999999999999999999999999999973                                     


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC--eEeEEee-CCCcEEEEEEeeCCCCEEEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f~p~d~~~l~s  367 (667)
                              +.++.+.+|.+.|+.+.|+.+. .+++|+.|.++++||-++.  ++++.+. ..+.|.++..   .+..|+.
T Consensus        92 --------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v---~~heIva  160 (307)
T KOG0316|consen   92 --------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV---AEHEIVA  160 (307)
T ss_pred             --------eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe---cccEEEe
Confidence                    5578899999999999999888 9999999999999998764  6777775 7788999998   4688999


Q ss_pred             EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      |+.||++|.||++.++... .....+|++++|++||+..++++.++++++.|-.++++....   .+++.  ...-...+
T Consensus       161 GS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY---kGhkn--~eykldc~  234 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY---KGHKN--MEYKLDCC  234 (307)
T ss_pred             eccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh---ccccc--ceeeeeee
Confidence            9999999999999998764 234567999999999999999999999999999998876542   12111  12233455


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS-QMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~-v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      ++... .++++|++||.|++||+.+.....+...+... +.+++++|.-.-++++. ++.+..|--
T Consensus       235 l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  235 LNQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             ecccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence            65553 79999999999999999876555555445555 78999999887777776 455666643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=4.5e-24  Score=235.07  Aligned_cols=266  Identities=23%  Similarity=0.374  Sum_probs=203.1

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .+...|.++|+|+.|+|||+|||+|++|+.|.||+...... .-.|...                  ++..        .
T Consensus        63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~-~~~fgs~------------------g~~~--------~  115 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS-GTVFGST------------------GGAK--------N  115 (942)
T ss_pred             eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC-ccccccc------------------cccc--------c
Confidence            34567999999999999999999999999999999874100 0000000                  0000        0


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                      ....+.+..+.+|...|.+++|+|++ +|++++.|++|.|||..+.++++++. |...|..+.|.| -|+||++-+.|++
T Consensus       116 vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrt  194 (942)
T KOG0973|consen  116 VESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRT  194 (942)
T ss_pred             cceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCce
Confidence            01245678899999999999999999 99999999999999999999988885 999999999999 9999999999999


Q ss_pred             EEEEecCCCeEEEec-------ccCCceEEEEEeeCCCEEEEEec----CCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          374 VRIWGVCEKRVVDWA-------DVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       374 v~iwdl~~~~~~~~~-------~~~~~v~~v~~spdg~~l~~gs~----dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      |++|.+.+-.+.+..       .....+..+.|+|||++|++...    ...+.|.+-.+.+..   ..+    .+|.++
T Consensus       195 ikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~---~~L----vGH~~p  267 (942)
T KOG0973|consen  195 LKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD---KDL----VGHSAP  267 (942)
T ss_pred             EEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee---eee----ecCCCc
Confidence            999997764444321       12345788999999999998542    235666665443332   222    334689


Q ss_pred             eEEEEEccC--------CC--------eEEEEEeCCCcEEEEECCcceeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          443 ITGIQFSRD--------ES--------QRIMITSEDSKLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       443 I~~l~~sp~--------g~--------~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      ++++.|+|.        |.        ..+++|+.|+.|.||........+..+ -....|..++|+|||-.|+++|.||
T Consensus       268 ~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  268 VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             eEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence            999999873        11        168899999999999976443333331 1367899999999999999999999


Q ss_pred             cEEEEEcCCCC
Q 005956          506 RVYVWNYDELC  516 (667)
Q Consensus       506 ~I~iWd~~~~~  516 (667)
                      +|.+..++..+
T Consensus       348 tV~~i~Fee~E  358 (942)
T KOG0973|consen  348 TVALIHFEEKE  358 (942)
T ss_pred             eEEEEEcchHH
Confidence            99999997653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=229.52  Aligned_cols=246  Identities=22%  Similarity=0.384  Sum_probs=204.2

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ..+...+.+|.+.|++++|..-+.+|++|+.|.+++|||+.++                                     
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-------------------------------------  281 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-------------------------------------  281 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-------------------------------------
Confidence            3344458999999999999887889999999999999998864                                     


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                              .+.+.+.||...|.++...+ ..+++|+.|.+|++|++.++.++.++. |..+|.++..   ++.++++|+.
T Consensus       282 --------~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~---~~~~lvsgs~  349 (537)
T KOG0274|consen  282 --------ECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL---DEPLLVSGSY  349 (537)
T ss_pred             --------cEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe---cCCEEEEEec
Confidence                    55788899999999998653 378889999999999999999999998 9999999999   4789999999


Q ss_pred             CCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC-cceeeeEeeccccCcCCCCeEEEEE
Q 005956          371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~-~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      |++|++||+.+++++. ..+|...|+++.+.+. ..++.|+.|++|++||+++. +....       ...|..-+..+.+
T Consensus       350 d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-------l~~h~~~v~~l~~  421 (537)
T KOG0274|consen  350 DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT-------LQGHTSLVSSLLL  421 (537)
T ss_pred             CceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh-------hcCCccccccccc
Confidence            9999999999999875 7789999999987665 89999999999999999987 44321       2233455666666


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCcceeeEEeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          449 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      ..   ++|++++.|++|++||..+......... |...|..+++.  ...+++++.||.+++||+.++....
T Consensus       422 ~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  422 RD---NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cc---ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence            53   5999999999999999875444443333 56778888775  4678899999999999999987543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=2.1e-23  Score=196.32  Aligned_cols=290  Identities=14%  Similarity=0.150  Sum_probs=226.6

Q ss_pred             eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~  381 (667)
                      .++||..+++.+.|+.+| +|++|+.|.++.||-..+|+.+.++. |.+.|+|+...- +.+.+++|+.|.++++||+.+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence            467999999999999999 99999999999999999999999985 999999999998 899999999999999999999


Q ss_pred             CeEEEecccCCceEEEEEeeCCCEEEEEec-----CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          382 KRVVDWADVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       382 ~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-----dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                      |+.+.......+|..+.|+++|+++++.+.     .+.|.++|++........-...-....+...++.+.|.|-+ .+|
T Consensus        84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~i  162 (327)
T KOG0643|consen   84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETI  162 (327)
T ss_pred             CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEE
Confidence            999998889999999999999999888764     36799999984432111000000122234889999999996 899


Q ss_pred             EEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccC
Q 005956          457 MITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  535 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~d  535 (667)
                      ++|..||.|.+||..+..... ....|...|+.+.+++|..++++++.|.+-++||+.+...........+.++.+++|-
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~  242 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL  242 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence            999999999999998754333 3345888999999999999999999999999999999988888888888888899997


Q ss_pred             CcEEEEecCCCCcccccccCCCC--CCcCc--cC----cCCCCCCcccCCCcccCCCCCCCCCCCCCC
Q 005956          536 GVSVAVQWPGIGTEQKSLCSSSL--RDCSQ--KW----DNLETAPWIRDSERFSLGSWFSNDGPCRGS  595 (667)
Q Consensus       536 g~~lav~w~~~~~~~~~~~~~~~--~~~~~--~w----~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~  595 (667)
                      -..+.+.-......+........  ..+|-  +.    .....+-....+.+|+|++...+.|...|-
T Consensus       243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence            77777655544333221111100  00000  00    112333445567899999999998887765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=4.4e-24  Score=204.32  Aligned_cols=213  Identities=22%  Similarity=0.356  Sum_probs=179.0

Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC------------C------eEeEEe-eCCCcEEEEEEeeC
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------N------QCLNVF-DHHNYVTCVQFNPI  360 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~------------~------~~~~~~-~h~~~V~~l~f~p~  360 (667)
                      ....+..|..++.+.+|++|| ++++|+.|..|+|.|++.            +      -.++++ .|.+.|+++.|+| 
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-  182 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-  182 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-
Confidence            345677899999999999999 999999999999999861            1      133443 5999999999999 


Q ss_pred             CCCEEEEEecCCeEEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  437 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~  437 (667)
                      ....|++|+.|++|++||...-..   .+......+|.++.|+|.|.+|++|+...++++||+++.+.-....    ...
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan----Pd~  258 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN----PDD  258 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC----ccc
Confidence            899999999999999999976433   3455566789999999999999999999999999999876543311    234


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      .|.+.|+++.+++.| ++.++++.||.|+|||..  +++..+........|.++.|+.+|+||++.+.|..|++|.+.++
T Consensus       259 qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             ccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            567899999999996 899999999999999965  56666666556778999999999999999999999999999988


Q ss_pred             Cccc
Q 005956          516 CFPS  519 (667)
Q Consensus       516 ~~~~  519 (667)
                      ....
T Consensus       338 R~l~  341 (430)
T KOG0640|consen  338 RMLK  341 (430)
T ss_pred             ceEE
Confidence            6543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=209.19  Aligned_cols=250  Identities=19%  Similarity=0.293  Sum_probs=210.6

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ..-.+.++++||.-.|+.+.|+|+...+++++.|-.|+||.+...                                   
T Consensus       249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-----------------------------------  293 (506)
T KOG0289|consen  249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-----------------------------------  293 (506)
T ss_pred             chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-----------------------------------
Confidence            344566788999999999999999999999999999999998751                                   


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCC---CcEEEEEEeeCCCCEE
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNYF  365 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~d~~~l  365 (667)
                                ........|..+|+.+..+|.| +|++++.|++..+.|+.++.++....+.   -.+++++|+| ||.+|
T Consensus       294 ----------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLif  362 (506)
T KOG0289|consen  294 ----------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIF  362 (506)
T ss_pred             ----------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEE
Confidence                      2344566899999999999999 9999999999999999999999888764   3589999999 99999


Q ss_pred             EEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          366 ISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      .+|..|+.|+|||+..+..+ .+.+|.++|.+++|+.+|.++++++.|+.|++||++..+. ...+.+...     ..+.
T Consensus       363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~-----~~v~  436 (506)
T KOG0289|consen  363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEK-----KEVN  436 (506)
T ss_pred             eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-cceeecccc-----ccce
Confidence            99999999999999987755 5788999999999999999999999999999999997653 333444332     4799


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      ++.|.+.| .+|++++.|=+|++++-.  ..........|.+..+.+.|....++++++|.|..++++.+
T Consensus       437 s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  437 SLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            99999996 888888888777777722  22222333347778899999999999999999999998864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=186.57  Aligned_cols=249  Identities=20%  Similarity=0.349  Sum_probs=199.0

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.-+.|++.|.|.+|||+|++||||+.|.+|++.-.....+.                                     
T Consensus        82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~-------------------------------------  124 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN-------------------------------------  124 (350)
T ss_pred             eeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccc-------------------------------------
Confidence            3444579999999999999999999999999999876642111                                     


Q ss_pred             ccccCCcceeeeccccceEEEEecCC----C-eEEEEe-CCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNS----N-YLLSCS-MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~----~-~l~s~s-~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~s  367 (667)
                         ...+-.+|.-|.+.|.+++|..+    + .|++++ .|..|++-|..+++....+. |++.|.++---  ++-.|++
T Consensus       125 ---~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~s  199 (350)
T KOG0641|consen  125 ---ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFAS  199 (350)
T ss_pred             ---ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEc
Confidence               11334567789999999999642    2 566554 47778888888998888775 88888876432  6889999


Q ss_pred             EecCCeEEEEecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          368 GSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      |+.|.+|++||++-...+...+        ....|.+++..|.|+.|++|-.|..+.+||++.+.....       ...|
T Consensus       200 gsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~-------f~ph  272 (350)
T KOG0641|consen  200 GSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR-------FHPH  272 (350)
T ss_pred             cCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee-------eCCC
Confidence            9999999999999877765332        125699999999999999999999999999998876543       3344


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-c---ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGV-D---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~---~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ...|.++.|+|. ..++++++.|..|++-|+. +   .........|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus       273 sadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  273 SADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ccceeEEEeCCC-ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            688999999997 5899999999999999976 2   22222333488889999999999889999999999999765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=4.5e-24  Score=200.22  Aligned_cols=235  Identities=20%  Similarity=0.302  Sum_probs=199.1

Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      ..+++|...|.+++|+.+| .|++|+.|+++.+|+++..+.....   +|.+.|-.++|+|.....|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5677999999999999999 9999999999999999987655444   48889999999998999999999999999999


Q ss_pred             cCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       379 l~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      ++.+++.......+.-.-++|+|+|.+++++..|..|.+.|.++.+.....        .....+..+.|+-++ .+++.
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--------~~~~e~ne~~w~~~n-d~Ffl  164 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--------QFKFEVNEISWNNSN-DLFFL  164 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--------cccceeeeeeecCCC-CEEEE
Confidence            999998887777777777899999999999999999999999987664331        112457788888654 67777


Q ss_pred             EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-ccccccCccceeEEccCCc
Q 005956          459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP-SSKQKNSVRSCEHFFSEGV  537 (667)
Q Consensus       459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~fs~dg~  537 (667)
                      +...|+|.|.....+........|.....++.|+|+|+|+|+|+.|..+-+||++..-+. ......-++..+.|+.||+
T Consensus       165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~  244 (313)
T KOG1407|consen  165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR  244 (313)
T ss_pred             ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence            788899999997766655555668899999999999999999999999999999987553 4456667778889999999


Q ss_pred             EEEEecCCC
Q 005956          538 SVAVQWPGI  546 (667)
Q Consensus       538 ~lav~w~~~  546 (667)
                      +||.++.+.
T Consensus       245 ~lASaSEDh  253 (313)
T KOG1407|consen  245 MLASASEDH  253 (313)
T ss_pred             eeeccCccc
Confidence            999977654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=6.9e-23  Score=223.44  Aligned_cols=241  Identities=18%  Similarity=0.331  Sum_probs=203.4

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .|...|++..|.  +.++++++.|++|++|+..++                                             
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~---------------------------------------------  238 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG---------------------------------------------  238 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccc---------------------------------------------
Confidence            367789999998  458999999999999999863                                             


Q ss_pred             Cccee-eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          300 SPLQE-LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       300 ~~~~~-l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      ..+.. +.||.+.|+++++...+ +|++|+.|+++++||..+++|..++. |...|.++...   +.++++|+.|.+|++
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkV  315 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKV  315 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc---CceEeeccCCceEEE
Confidence            22344 88999999999998744 99999999999999999999999997 99999999884   578899999999999


Q ss_pred             EecCCCeEEEecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          377 WGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       377 wdl~~~~~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      |++.++..+.... |.+.|.++.++  +..+++|+.||+|.+||+.+.++...       ...|...|+++.+.+.  ..
T Consensus       316 W~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s-------l~gH~~~V~sl~~~~~--~~  384 (537)
T KOG0274|consen  316 WDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS-------LSGHTGRVYSLIVDSE--NR  384 (537)
T ss_pred             EeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee-------ecCCcceEEEEEecCc--ce
Confidence            9999999888666 99999999987  78999999999999999997766432       3335689999988774  58


Q ss_pred             EEEEeCCCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc
Q 005956          456 IMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK  523 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  523 (667)
                      +++|+.|+.|++||+.+. .+......|...+..+.  ..+++|++++.|+.|++||.+++++......
T Consensus       385 ~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  385 LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             EEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence            999999999999998866 44444444777776555  4578999999999999999999987665444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=217.77  Aligned_cols=250  Identities=20%  Similarity=0.391  Sum_probs=204.6

Q ss_pred             cccccEE---EEEEc-CCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          220 AHKGCIW---TLKFS-PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       220 ~H~~~I~---~v~fs-pdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .|...|.   .+..+ |.++||+|||.||.|++|++......                                      
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~--------------------------------------   60 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE--------------------------------------   60 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCC--------------------------------------
Confidence            3444555   44444 57889999999999999998752110                                      


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC--eEeEEee-CCCcEEEEEE-eeCCCCEEEEEec
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQF-NPIDDNYFISGSI  370 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f-~p~d~~~l~sgs~  370 (667)
                       .+...+..++.|.+.|+++....++ .|+++|.|-+|++|+...+  -|..+++ |.++|.|++. -+ +..++++|+.
T Consensus        61 -~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGL  138 (735)
T KOG0308|consen   61 -PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGL  138 (735)
T ss_pred             -cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCC
Confidence             0112367788999999999998888 9999999999999999877  5677775 9999999999 55 8889999999


Q ss_pred             CCeEEEEecCCCeE--E---------Eec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956          371 DGKVRIWGVCEKRV--V---------DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (667)
Q Consensus       371 Dg~v~iwdl~~~~~--~---------~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~  438 (667)
                      |+.|.+||+.++..  +         ... ++...|++++.++.|..|+.|+..+.+++||.++.+....   +.    +
T Consensus       139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---Lr----G  211 (735)
T KOG0308|consen  139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---LR----G  211 (735)
T ss_pred             CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---ee----c
Confidence            99999999997722  1         122 6778899999999999999999999999999998876543   22    4


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      |...|..+..++|| ..+++++.||+|++||+....+......|...|.++..+|+-.++++|+.||.|+.=|+.+...
T Consensus       212 HTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  212 HTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             cccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence            46889999999996 8999999999999999985544444444888899999999999999999999999999988543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.6e-23  Score=200.86  Aligned_cols=255  Identities=18%  Similarity=0.311  Sum_probs=214.4

Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      ...+.+++.||++.||.++.......+.|++.|.+.+||.+++                                     
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-------------------------------------  179 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-------------------------------------  179 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-------------------------------------
Confidence            3456778899999999999988888999999999999999997                                     


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEec------CC------------------------
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------GC------------------------  339 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~------~~------------------------  339 (667)
                              +.++.++.||.+.|+++.|++.+ ++++++.|++..||..      ..                        
T Consensus       180 --------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d  251 (481)
T KOG0300|consen  180 --------GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD  251 (481)
T ss_pred             --------ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence                    45678899999999999999999 8899999999999961      10                        


Q ss_pred             ------C----eEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEE
Q 005956          340 ------N----QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFI  407 (667)
Q Consensus       340 ------~----~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~  407 (667)
                            +    .++..+ +|...|.+..|.. .++.+++++.|.+..+||++++.++. +.+|....+.++-+|..++++
T Consensus       252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVv  330 (481)
T KOG0300|consen  252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVV  330 (481)
T ss_pred             cccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEE
Confidence                  0    012222 4888999999998 99999999999999999999999886 678889999999999999999


Q ss_pred             EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeE
Q 005956          408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM  487 (667)
Q Consensus       408 ~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~  487 (667)
                      +.+.|.+.++||++..-..  ...+++    |...|+++.|..++  .+++|+.|.+|+|||+++....+.......+++
T Consensus       331 TsSrDtTFRLWDFReaI~s--V~VFQG----HtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N  402 (481)
T KOG0300|consen  331 TSSRDTTFRLWDFREAIQS--VAVFQG----HTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN  402 (481)
T ss_pred             EeccCceeEeccchhhcce--eeeecc----cccceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence            9999999999999843222  222333    45889999999984  899999999999999887655554444678899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          488 SASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       488 ~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      .++++..++.|+.--++..|++||++......
T Consensus       403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             eeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence            99999888899999888999999999876543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2e-23  Score=209.89  Aligned_cols=235  Identities=25%  Similarity=0.382  Sum_probs=196.6

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      ++|...|.+++.|+||+|||||+.|..|.||+..+                                             
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t---------------------------------------------  233 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT---------------------------------------------  233 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc---------------------------------------------
Confidence            38999999999999999999999999999999986                                             


Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE-eeCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      .++++.+.+|.+.|.+++|-... .|++++.|.+|++|+++....+.+ |+|.+.|..|.... -++.+.+|+.|+++++
T Consensus       234 ~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rl  312 (479)
T KOG0299|consen  234 LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRL  312 (479)
T ss_pred             cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEE
Confidence            35677899999999999998766 999999999999999988776655 47999999998887 6777888889999999


Q ss_pred             EecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc-----CCCCeEEEEEccC
Q 005956          377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-----SGNKITGIQFSRD  451 (667)
Q Consensus       377 wdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~-----~~~~I~~l~~sp~  451 (667)
                      |++.......+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...+.....-..|+-...     ++..|++++..|.
T Consensus       313 wKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~  391 (479)
T KOG0299|consen  313 WKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG  391 (479)
T ss_pred             EeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence            99987777777888889999999754 68999999999999999887766543333322111     2248999999997


Q ss_pred             CCeEEEEEeCCCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          452 ESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                       ..++++|+.+|.|++|-+.+.   +..+....-.+.|++++|+++|++|++|
T Consensus       392 -sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  392 -SDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             -CceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence             589999999999999987654   3344444467889999999999977766

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=6.1e-23  Score=226.22  Aligned_cols=288  Identities=20%  Similarity=0.249  Sum_probs=218.0

Q ss_pred             cccccEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs--~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      .|...|.++..+|||..+||||  .||.++||+.......                                  ...++.
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------------------------------~~~~~~   56 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------------------------------KEEKNE   56 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccch----------------------------------hhhhhc
Confidence            3556799999999999999999  8999999998741100                                  000011


Q ss_pred             -cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC------------------CeEeEEe-eCCCcEEEEE
Q 005956          298 -EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------------NQCLNVF-DHHNYVTCVQ  356 (667)
Q Consensus       298 -~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~------------------~~~~~~~-~h~~~V~~l~  356 (667)
                       -.+.+.....|.+.|+|+.|++|| +||+|+.|+.|.||....                  .++...+ +|...|..+.
T Consensus        57 ~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~  136 (942)
T KOG0973|consen   57 NLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN  136 (942)
T ss_pred             ccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence             145678888999999999999999 999999999999998762                  1234444 4999999999


Q ss_pred             EeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956          357 FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  435 (667)
Q Consensus       357 f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~  435 (667)
                      |+| ++.+|++++.|++|.||+..+.+.+. +.+|...|..+.|.|-|++||+-+.|++|++|++.+..... .+.-+-.
T Consensus       137 Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k-~It~pf~  214 (942)
T KOG0973|consen  137 WSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK-SITKPFE  214 (942)
T ss_pred             cCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE-eeccchh
Confidence            999 99999999999999999999987654 78899999999999999999999999999999976643322 1211111


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEe----CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCC-----CC----------
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITS----EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GK----------  496 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s----~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spd-----g~----------  496 (667)
                      .......+..+.|+||| .+|++..    .-.++.|.+-..........+|..++.++.|+|.     .+          
T Consensus       215 ~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence            12234568899999997 7777753    2347888875544444444558899999999982     11          


Q ss_pred             --EEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCcEEEEecC
Q 005956          497 --HIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       497 --~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~~lav~w~  544 (667)
                        .+|+||.|++|-||...........+.-  ..+.-+.|+|||-.|-+++-
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~  345 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL  345 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence              5789999999999999776654444332  33444689999976665543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.9e-23  Score=193.02  Aligned_cols=249  Identities=22%  Similarity=0.343  Sum_probs=199.8

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      -..|++.|..+...--|+.|||++.|++|+|+.+.+...                                         
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----------------------------------------   45 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----------------------------------------   45 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------------------------------------
Confidence            357999999999988999999999999999999986211                                         


Q ss_pred             cCCcceeeeccccceEEEEecC--CC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCC-CCEEEEEec
Q 005956          298 EESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPID-DNYFISGSI  370 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~--~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d-~~~l~sgs~  370 (667)
                       .+++.+|.||.++|+.++|..  -| +|++++.||.|.||.-++++-.+..   .|...|++++|-|.+ +-.|++++.
T Consensus        46 -s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS  124 (299)
T KOG1332|consen   46 -SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS  124 (299)
T ss_pred             -ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC
Confidence             256789999999999999964  45 9999999999999999988655444   388999999999943 456889999


Q ss_pred             CCeEEEEecCCC-eE---EEecccCCceEEEEEeeC---C-----------CEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956          371 DGKVRIWGVCEK-RV---VDWADVRDVISAICYIPD---G-----------KGFIVGSITGTCHFYKASGNDLKLEKVDF  432 (667)
Q Consensus       371 Dg~v~iwdl~~~-~~---~~~~~~~~~v~~v~~spd---g-----------~~l~~gs~dg~i~l~d~~~~~~~~~~~~~  432 (667)
                      ||.|.|.+.+.. .-   .....|.-.|++++|.|.   |           +.|++|+.|..++||+........+.   
T Consensus       125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~---  201 (299)
T KOG1332|consen  125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER---  201 (299)
T ss_pred             CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh---
Confidence            999999998765 21   124567888999999995   5           66999999999999999887554431   


Q ss_pred             ccccCcCCCCeEEEEEccCC---CeEEEEEeCCCcEEEEECCcceeeEE---eCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005956          433 HDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDVIHKFK---GLPKSGSQMSASFTTTGKHIISIGDDCR  506 (667)
Q Consensus       433 ~~~~~~~~~~I~~l~~sp~g---~~~l~~~s~dg~I~iwd~~~~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~Dg~  506 (667)
                        ....|...|..++|.|.-   ..+|++++.||++.||.........+   .......+..++||+.|..|+.++.|+.
T Consensus       202 --~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk  279 (299)
T KOG1332|consen  202 --TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK  279 (299)
T ss_pred             --hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE
Confidence              134456899999999963   35899999999999997552211111   1224567899999999999999999999


Q ss_pred             EEEEEcC
Q 005956          507 VYVWNYD  513 (667)
Q Consensus       507 I~iWd~~  513 (667)
                      |.+|.-+
T Consensus       280 vtlwke~  286 (299)
T KOG1332|consen  280 VTLWKEN  286 (299)
T ss_pred             EEEEEeC
Confidence            9999754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.6e-23  Score=222.83  Aligned_cols=231  Identities=21%  Similarity=0.363  Sum_probs=183.1

Q ss_pred             ceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCC--------------------------------C-------
Q 005956          302 LQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--------------------------------N-------  340 (667)
Q Consensus       302 ~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~--------------------------------~-------  340 (667)
                      .+.+. .|.+.|+++.|++|| +||+||.|+.|+||.+..                                .       
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34555 899999999999999 999999999999998754                                0       


Q ss_pred             ---------------------eEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEE
Q 005956          341 ---------------------QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC  398 (667)
Q Consensus       341 ---------------------~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~  398 (667)
                                           ++++.| +|.+.|..+.|+.  .++|++++.|.+||+|++....++..+.|.+.|+|++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence                                 001112 3888999999996  7899999999999999999999999999999999999


Q ss_pred             Eee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee--
Q 005956          399 YIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--  475 (667)
Q Consensus       399 ~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~--  475 (667)
                      |+| |.++|++|+-||.|+||++...+.... ..+       ..-|++++|.|+| +..++|+.+|.+++|+......  
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl-------~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~  487 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDL-------RDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS  487 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEee-hhh-------hhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE
Confidence            999 889999999999999999987765432 111       2679999999996 8999999999999999874332  


Q ss_pred             eEEeCCC------CCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCccccc---cccCccceeEEccCCcEEEEec
Q 005956          476 KFKGLPK------SGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCFPSSK---QKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       476 ~~~~~~~------~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~~~~~~---~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      .+....+      ...|+.+.|.|... -|++.+.|..|+|||..+.......   +.........|+.||++++.+.
T Consensus       488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s  565 (712)
T KOG0283|consen  488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS  565 (712)
T ss_pred             eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence            2222111      23799999987543 4777788999999999655443221   2233334568999999999876

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.3e-21  Score=203.39  Aligned_cols=256  Identities=15%  Similarity=0.276  Sum_probs=209.4

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      +..+-+.--..+|++|+|+.+.+.||.+-.||.|.||++...                                      
T Consensus        16 hrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------------------   57 (691)
T KOG2048|consen   16 HRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------------------   57 (691)
T ss_pred             EEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------------------
Confidence            334444455788999999999999999999999999999862                                      


Q ss_pred             CcccccCCcceeeecc-ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec
Q 005956          293 EVFQIEESPLQELHGH-KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh-~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                            .-....+.|+ ...|.+|+|++.++|++.+.+|+|.-||+.+++.+..+. ..+.|++++.+| .+..++.|+.
T Consensus        58 ------w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~Igcd  130 (691)
T KOG2048|consen   58 ------WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCD  130 (691)
T ss_pred             ------ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecC
Confidence                  1123445555 468999999988899999999999999999999988886 677999999999 8899999999


Q ss_pred             CCeEEEEecCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEE
Q 005956          371 DGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l  446 (667)
                      ||.+..++...+.+..   +....+.+.+++|+|++..++.|+.||.|++||...+..... ...+.+-.+....-|.++
T Consensus       131 dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv  210 (691)
T KOG2048|consen  131 DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV  210 (691)
T ss_pred             CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE
Confidence            9988888888887764   333458899999999999999999999999999987765542 222222222234568899


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      .|-.++  .|++|..-|.|.+||..  +..+.+..  |...|.+++..+++.++++++.|+.|.-|...+...
T Consensus       211 ~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~--h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  211 LFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSC--HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             EEeecC--cEEEecCCceEEEEcccCcchhhhhhh--hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            998875  89999999999999976  44555555  789999999999999999999999999999887744

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.4e-22  Score=189.47  Aligned_cols=202  Identities=17%  Similarity=0.307  Sum_probs=170.1

Q ss_pred             cccceEEEEecCCC--eEEEEeCCCcEEEEecCC-CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956          308 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC-NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (667)
Q Consensus       308 h~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~-~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~  383 (667)
                      -.+.+.+++|+++.  .+++++.||+++|||+.. ..++..++ |...|.++.|++.....+++++.|++|++|+....+
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            35679999999876  899999999999999643 35677775 999999999999888899999999999999988766


Q ss_pred             E-EEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          384 V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       384 ~-~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      . ..+.+|...|....|+| .++.+++++.||++++||++....... +..+      ...|.++.|+.-+.+.+++++.
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah------~~Eil~cdw~ky~~~vl~Tg~v  211 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAH------NSEILCCDWSKYNHNVLATGGV  211 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEec------cceeEeecccccCCcEEEecCC
Confidence            4 45888999999999999 678999999999999999987644322 3333      3689999999988889999999


Q ss_pred             CCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCC
Q 005956          462 DSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       462 dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      |+.|++||+++. ...+...+|.-.|..+.|||.. ..||+++.|-+++|||...+.
T Consensus       212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence            999999998753 2344455689999999999975 578999999999999988654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.3e-22  Score=213.48  Aligned_cols=272  Identities=17%  Similarity=0.258  Sum_probs=212.8

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +|++.-+.|+|.|+|.+|+|++.||.|++|+.....                                           .
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------------------------------------------e   47 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------------------------------------------E   47 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------------------------------------------c
Confidence            799999999999999999999999999999987520                                           1


Q ss_pred             CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      .| .++.-|...|.+++... ++|++|+.+++|.+|.+..++.-..+ ..+-++.+++|+. +|++++.|+.|-.|++.+
T Consensus        48 ~P-~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~  124 (933)
T KOG1274|consen   48 EP-ETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLN  124 (933)
T ss_pred             CC-chhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEe
Confidence            11 11222667788777543 38999999999999999988776554 4778999999999 999999999999999999


Q ss_pred             cCCCeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc-CCCCeEEEEEccCCCeEE
Q 005956          379 VCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-SGNKITGIQFSRDESQRI  456 (667)
Q Consensus       379 l~~~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~-~~~~I~~l~~sp~g~~~l  456 (667)
                      +.+... ....+|..+|.++.|+|.+++||+.+.||.+++||+.++.+....-.+...... ....++.++|+|+| ..+
T Consensus       125 ~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~l  203 (933)
T KOG1274|consen  125 LDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTL  203 (933)
T ss_pred             ccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeE
Confidence            987654 458899999999999999999999999999999999977664331111111111 13567889999996 577


Q ss_pred             EEEeCCCcEEEEECCcceeeE--EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEcc
Q 005956          457 MITSEDSKLRILDGVDVIHKF--KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS  534 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~~~~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~  534 (667)
                      ++...|+.|++|+.......+  ....+...+..+.|+|+|+|||+++.||.|.|||+++...   -.....+.+++|.|
T Consensus       204 a~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  204 AVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKP  280 (933)
T ss_pred             EeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCC
Confidence            788889999999977544443  4444556699999999999999999999999999998332   22235567788888


Q ss_pred             CCcEEEE
Q 005956          535 EGVSVAV  541 (667)
Q Consensus       535 dg~~lav  541 (667)
                      +...+.+
T Consensus       281 ~~n~it~  287 (933)
T KOG1274|consen  281 NANAITL  287 (933)
T ss_pred             CCCeeEE
Confidence            7654443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.1e-22  Score=193.48  Aligned_cols=282  Identities=19%  Similarity=0.267  Sum_probs=209.9

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      -.|+.|++.|.+||.|+.||.|.|||+.+.                                             .+...
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---------------------------------------------~iar~   60 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF---------------------------------------------RIARM   60 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc---------------------------------------------chhhh
Confidence            789999999999999999999999999872                                             34567


Q ss_pred             eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~  383 (667)
                      +.+|..+|++++||++| .|+|++.|..|.+||+..|.+++.+....+|+.+.|+|.+.+.++..-.+..-.+.++....
T Consensus        61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~  140 (405)
T KOG1273|consen   61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK  140 (405)
T ss_pred             hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence            78999999999999999 99999999999999999999999999999999999999888887777766666666665433


Q ss_pred             EE--Eecc---cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          384 VV--DWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       384 ~~--~~~~---~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      ..  ....   ......+..|.+.|+++++|+..|.+.+||..+.++... +...     ....|..+.++..| .++++
T Consensus       141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas-~rit-----s~~~IK~I~~s~~g-~~lii  213 (405)
T KOG1273|consen  141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS-FRIT-----SVQAIKQIIVSRKG-RFLII  213 (405)
T ss_pred             eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee-eeec-----hheeeeEEEEeccC-cEEEE
Confidence            22  1111   122233446889999999999999999999998766543 1111     12578889999885 89999


Q ss_pred             EeCCCcEEEEECCcce-----------eeEEeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCccccccccCc
Q 005956          459 TSEDSKLRILDGVDVI-----------HKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSV  526 (667)
Q Consensus       459 ~s~dg~I~iwd~~~~~-----------~~~~~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~~~~~~~~~~  526 (667)
                      -+.|..||.|++.+..           ++++...+...-.+++||.+|.|++.++. -..+|||.-..|......+...-
T Consensus       214 NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg  293 (405)
T KOG1273|consen  214 NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG  293 (405)
T ss_pred             ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch
Confidence            9999999999976332           23333334455678999999999988874 35799999988876555443221


Q ss_pred             cceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCC
Q 005956          527 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETA  571 (667)
Q Consensus       527 ~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~  571 (667)
                               ...+-+.|.+..+.+..+.+    +...+|.+.+.+
T Consensus       294 ---------E~l~DV~whp~rp~i~si~s----g~v~iw~~~~~e  325 (405)
T KOG1273|consen  294 ---------EELLDVNWHPVRPIIASIAS----GVVYIWAVVQVE  325 (405)
T ss_pred             ---------hheeecccccceeeeeeccC----CceEEEEeeccc
Confidence                     12344566665554333322    334466655433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=1.8e-23  Score=200.99  Aligned_cols=242  Identities=23%  Similarity=0.383  Sum_probs=202.5

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      +--|.++|.|+.||.|...||+|+.||.|+||.+.++.                                          
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~------------------------------------------  296 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ------------------------------------------  296 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecch------------------------------------------
Confidence            45689999999999999999999999999999999754                                          


Q ss_pred             cCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          298 EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       298 ~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                         ++..|. .|+..|+++.|+.|+ .+++++.|.+++|.-+.+|++++.|. |..+|+...|.+ +|..+++++.||+|
T Consensus       297 ---ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtv  372 (508)
T KOG0275|consen  297 ---CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTV  372 (508)
T ss_pred             ---HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccE
Confidence               355555 899999999999999 99999999999999999999999996 999999999999 99999999999999


Q ss_pred             EEEecCCCeEEE---ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          375 RIWGVCEKRVVD---WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       375 ~iwdl~~~~~~~---~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      ++|+..+.++..   ..+...+|+++-.-| +...++++...+++.+.++.+.-.. .   +.. -+..++...+.+.+|
T Consensus       373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr-s---fsS-GkREgGdFi~~~lSp  447 (508)
T KOG0275|consen  373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR-S---FSS-GKREGGDFINAILSP  447 (508)
T ss_pred             EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe-e---ecc-CCccCCceEEEEecC
Confidence            999999988764   233456688888777 4578899999999999998753222 1   111 122346677788999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      .| .++.+.+.|+.++.|........-....|...+..++-+|..+.||+-++||.+++|.
T Consensus       448 kG-ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  448 KG-EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CC-cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            86 8999999999999999764433333334888899999999999999999999999995

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=1.6e-22  Score=205.49  Aligned_cols=244  Identities=17%  Similarity=0.213  Sum_probs=189.7

Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE----eEEee--CCCcEEEEEEeeCCCCEEEEEec
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNVFD--HHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~----~~~~~--h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                      ....-..+.+|+..|.++++.|.| +|++|+.|-+|++||+.....    .+.+.  ....|.+++|++ .+..|++.+.
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg  234 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSG  234 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEec
Confidence            344456788999999999999999 999999999999999975422    22222  456899999999 8888888888


Q ss_pred             CCeEEEEecCCCeEEE-------------ecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeecccc
Q 005956          371 DGKVRIWGVCEKRVVD-------------WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  436 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~-------------~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~  436 (667)
                      ....+|+|-...+++.             ..+|-..++|.||+|+. ..|++++.||++++||+...+.+.+.+.... .
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-~  313 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-A  313 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc-C
Confidence            8999999987765443             34567789999999965 5788999999999999998776665544332 2


Q ss_pred             CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      ....-+++.++|+++| ..|++|..||.|.+|+...    ....+ ..|.....|++++||+||++|++-|.|+++++||
T Consensus       314 ~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence            2334678999999997 7899999999999999642    22222 2333344899999999999999999999999999


Q ss_pred             cCCCCccccc----cccCccceeEEccCCcEEEEecC
Q 005956          512 YDELCFPSSK----QKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       512 ~~~~~~~~~~----~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      +...+.+...    ......+-++|||+.+++.++.+
T Consensus       393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             ccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            9987765442    22233445699999999988654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1e-22  Score=216.05  Aligned_cols=246  Identities=15%  Similarity=0.265  Sum_probs=200.0

Q ss_pred             EEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          225 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       225 I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      +..|+|+. +.++|||++..|.|.+||+...                                          +..+.+.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------~rnk~l~  127 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------IRNKLLT  127 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------ccchhhh
Confidence            44566653 4679999999999999999841                                          0134567


Q ss_pred             eeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          304 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                      .|..|+..|+++.|++..  +|++|+.||+|++||++..+...++. ....|..++|+|..+++|+++...|.+.+||++
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            788999999999999876  99999999999999999888777764 677999999999999999999999999999999


Q ss_pred             CCeE--EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          381 EKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       381 ~~~~--~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      .-..  .++..|.++|.|+.|+|++.+||+|+.|+.|+|||..+...... ..++.     ..++.++.|-|....+|++
T Consensus       208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-~tInT-----iapv~rVkWRP~~~~hLAt  281 (839)
T KOG0269|consen  208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-HTINT-----IAPVGRVKWRPARSYHLAT  281 (839)
T ss_pred             CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-eEEee-----cceeeeeeeccCccchhhh
Confidence            7553  35788999999999999999999999999999999987655433 22222     3789999999997777887


Q ss_pred             Ee--CCCcEEEEECCcceeeE-EeCCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956          459 TS--EDSKLRILDGVDVIHKF-KGLPKSGSQMSASFT-TTGKHIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       459 ~s--~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~s-pdg~~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      ++  .|-.|+|||+++....+ ....|...++.++|. .|-..+.+++.||.|..-.+++...+
T Consensus       282 csmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p  345 (839)
T KOG0269|consen  282 CSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP  345 (839)
T ss_pred             hhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence            76  46789999998643322 233488899999994 35667899999999988777766543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.7e-22  Score=191.52  Aligned_cols=285  Identities=17%  Similarity=0.279  Sum_probs=213.3

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCc---cccCCCCeEEecc--cCCCCc
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF---GSNAKEGKIKFGK--KKSSHV  286 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~  286 (667)
                      -.+..++.||.|.|++++|++.+.+++|++.|++-+||...-.-.......+.+..   .....+......+  ......
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence            34556788999999999999999999999999999999843110000000000000   0000000000000  000000


Q ss_pred             eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCE
Q 005956          287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~  364 (667)
                      .          -..|+..|.||.+.|.+..|-..+ .+++++.|.+..+||+++++.+..+. |....+.+.-+| ..++
T Consensus       260 t----------iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL  328 (481)
T KOG0300|consen  260 T----------IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL  328 (481)
T ss_pred             e----------eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence            0          135788999999999999999888 99999999999999999999999884 999999999999 9999


Q ss_pred             EEEEecCCeEEEEecCCCe--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          365 FISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +++.+.|.++++||.+..-  +..+.+|.+.|+++.|..+ ..+++|+.|.+|++||+++...+...+...       .+
T Consensus       329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd-------S~  400 (481)
T KOG0300|consen  329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD-------SP  400 (481)
T ss_pred             EEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC-------Cc
Confidence            9999999999999998532  3357899999999999876 478999999999999999888776655443       67


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCc-ce---eeEEeCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVD-VI---HKFKGLPKSGSQMSASFTTTG--KHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~---~~~~~~~~~~~v~~v~~spdg--~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      ++.++.+.. ...|+.--.+..|++||+.. ..   .+....+|..-|.+++|..+-  .-|++++-|..+.=|++..+.
T Consensus       401 ~NRvavs~g-~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  401 ANRVAVSKG-HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             cceeEeecC-CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            889999886 36888888888999999762 11   111234578889999996543  458899999999999987653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.7e-20  Score=194.07  Aligned_cols=256  Identities=14%  Similarity=0.147  Sum_probs=182.6

Q ss_pred             ceeeccccccEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~L-atgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      .+.+..|.. +.+++|+|+|++| ++++.++.|++||+.++..                                     
T Consensus        24 ~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-------------------------------------   65 (300)
T TIGR03866        24 TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-------------------------------------   65 (300)
T ss_pred             EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-------------------------------------
Confidence            344555544 6789999999976 5677899999999876321                                     


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                              ...+..+.. +..++|+|++ .++ +++.|+.|++||+.+.+.+..+.+...+.+++|+| ++.++++++.+
T Consensus        66 --------~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~  135 (300)
T TIGR03866        66 --------IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSET  135 (300)
T ss_pred             --------EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecC
Confidence                    222322322 4568899998 554 55678999999999988888887666678999999 99999988876


Q ss_pred             C-eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeecccc-CcCCCCeEEEEE
Q 005956          372 G-KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITGIQF  448 (667)
Q Consensus       372 g-~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~-~~~~~~I~~l~~  448 (667)
                      + .+.+||..+++..........+..++|+|+|+.+++++ .++.+++||+.+.+.... +...... .........+.|
T Consensus       136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~  214 (300)
T TIGR03866       136 TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK-ITFEIPGVHPEAVQPVGIKL  214 (300)
T ss_pred             CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee-eeecccccccccCCccceEE
Confidence            5 46778998887765444445678899999999886654 589999999987754332 2221100 001123457889


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccc
Q 005956          449 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~~~~  520 (667)
                      +|++...+++.+.++.|.+||+.+....... .+...+.+++|+|+|++|+++ +.++.|.|||+.+++....
T Consensus       215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~  286 (300)
T TIGR03866       215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS  286 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            9997444455566778999998754332221 134578899999999999886 4689999999999875433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=5e-22  Score=201.01  Aligned_cols=275  Identities=16%  Similarity=0.270  Sum_probs=226.8

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +|..-|.++.+|...+++.|||. |.|+|||+....                                          ..
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg------------------------------------------~k  453 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG------------------------------------------NK  453 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC------------------------------------------CC
Confidence            69999999999999999999987 669999998520                                          11


Q ss_pred             Ccceeee--ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          300 SPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       300 ~~~~~l~--gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                      .++..+.  .....|.++...||| .|++|+.-.+|.|||+..........   .....++++.+| |.++.+++..||.
T Consensus       454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGn  532 (705)
T KOG0639|consen  454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGN  532 (705)
T ss_pred             CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCc
Confidence            2233332  235678899999999 99999999999999997655433322   234677899999 9999999999999


Q ss_pred             EEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       374 v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      |.|||+....++. +.+|.+.+.||.+++||..|.+|+-|.+++.||++......+ ..+       ...|.++-++|.+
T Consensus       533 I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-hdF-------~SQIfSLg~cP~~  604 (705)
T KOG0639|consen  533 IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-HDF-------SSQIFSLGYCPTG  604 (705)
T ss_pred             EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-hhh-------hhhheecccCCCc
Confidence            9999999988775 888999999999999999999999999999999998765433 112       2679999999996


Q ss_pred             CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEE
Q 005956          453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF  532 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~f  532 (667)
                       .+|++|-.++.+.|...... .+++.+.|...|.++.|.+.|+++++.+.|+.+..|...-+...........+.++..
T Consensus       605 -dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI  682 (705)
T KOG0639|consen  605 -DWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI  682 (705)
T ss_pred             -cceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeee
Confidence             89999999999999886543 4566666999999999999999999999999999999998877666666666777799


Q ss_pred             ccCCcEEEEecCCCCc
Q 005956          533 FSEGVSVAVQWPGIGT  548 (667)
Q Consensus       533 s~dg~~lav~w~~~~~  548 (667)
                      +.|.+++++.......
T Consensus       683 S~ddkyIVTGSGdkkA  698 (705)
T KOG0639|consen  683 SFDDKYIVTGSGDKKA  698 (705)
T ss_pred             ccCceEEEecCCCcce
Confidence            9999999998776543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=8.2e-21  Score=203.18  Aligned_cols=284  Identities=17%  Similarity=0.240  Sum_probs=220.1

Q ss_pred             cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      .+..-.+..++++|...|+++.=+|--..+|.|..+|+|.|+++..                                  
T Consensus       188 Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~----------------------------------  233 (910)
T KOG1539|consen  188 NVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF----------------------------------  233 (910)
T ss_pred             EeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc----------------------------------
Confidence            3444556678889999999999999888999999999999999985                                  


Q ss_pred             eecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCC
Q 005956          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDN  363 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~  363 (667)
                                 .+.+.+|+...+.|+.++|..||  .+++|+..|.+-+||++..+.+....  |.+.|..+.|.| ...
T Consensus       234 -----------dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~ep  301 (910)
T KOG1539|consen  234 -----------DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEP  301 (910)
T ss_pred             -----------CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCc
Confidence                       34567776556999999999999  88899999999999999877666553  666666666666 556


Q ss_pred             EEEEEecCCeEEEEecCCCe----E-------------EE----------------------------------------
Q 005956          364 YFISGSIDGKVRIWGVCEKR----V-------------VD----------------------------------------  386 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl~~~~----~-------------~~----------------------------------------  386 (667)
                      .+++++.|..+++|=.+++.    .             +.                                        
T Consensus       302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~  381 (910)
T KOG1539|consen  302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR  381 (910)
T ss_pred             eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence            66666666655555211000    0             00                                        


Q ss_pred             --------------------------------------------------------ecc------cCCceEEEEEeeCCC
Q 005956          387 --------------------------------------------------------WAD------VRDVISAICYIPDGK  404 (667)
Q Consensus       387 --------------------------------------------------------~~~------~~~~v~~v~~spdg~  404 (667)
                                                                              ...      ....+++++.++.|+
T Consensus       382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN  461 (910)
T KOG1539|consen  382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN  461 (910)
T ss_pred             cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence                                                                    000      012378999999999


Q ss_pred             EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce----------
Q 005956          405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----------  474 (667)
Q Consensus       405 ~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~----------  474 (667)
                      +.+.|+..|.|.+|++.++......    +....|..+|++++...-+ +.+++++.+|.+.+||..+..          
T Consensus       462 F~~IG~S~G~Id~fNmQSGi~r~sf----~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~  536 (910)
T KOG1539|consen  462 FVFIGYSKGTIDRFNMQSGIHRKSF----GDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSS  536 (910)
T ss_pred             eEEEeccCCeEEEEEcccCeeeccc----ccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCC
Confidence            9999999999999999877554321    1234567999999998874 789999999999999854321          


Q ss_pred             ---------------------------------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956          475 ---------------------------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       475 ---------------------------------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~  521 (667)
                                                       +.|.  +|...|++++|||||++|++++.|++|++||+.++...-..
T Consensus       537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence                                             1111  48899999999999999999999999999999999887777


Q ss_pred             cccCccceeEEccCCcEEEEecC
Q 005956          522 QKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       522 ~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ....+...+.|+|+|.+||+.-.
T Consensus       615 ~vd~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  615 LVDSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             ecCCcceeeEECCCCCEEEEEEe
Confidence            77778888999999999999643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=5.5e-20  Score=169.04  Aligned_cols=263  Identities=19%  Similarity=0.228  Sum_probs=193.7

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      ..+.+|.+++|+|.|.+.|.|+...+++|-......                        +....+.....|+      .
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~------------------------~~r~~hea~~~pp------~   79 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALI------------------------DLRHAHEAAKQPP------S   79 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEcccccc------------------------CcccccccccCCC------e
Confidence            456789999999999999999999999987544210                        0000000000000      0


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE-----Ee-eCCCcEEEEEEeeC---CCCEEEEEe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----VF-DHHNYVTCVQFNPI---DDNYFISGS  369 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~-----~~-~h~~~V~~l~f~p~---d~~~l~sgs  369 (667)
                      ...+.-+.|.+.|.|.+|+|+| ++++|+.|++|++..+....+..     .| -|.+.|..++|...   .+.+|++++
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g  159 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG  159 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence            0112234689999999999999 99999999999998765443322     22 38999999999751   245666655


Q ss_pred             -cCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEE
Q 005956          370 -IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       370 -~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l  446 (667)
                       .|..|++-|...++... +.+|.+.|.++ |+-+|-.+++|+.|.+|++||++-+..... .-.+++ .......|.++
T Consensus       160 agdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-~glessavaav  237 (350)
T KOG0641|consen  160 AGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-GGLESSAVAAV  237 (350)
T ss_pred             CCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccC-CCcccceeEEE
Confidence             46778888888887664 67788888776 456788999999999999999997655432 111111 11123679999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      +..|.| ++|++|-.|....+||++........++|...|.++.|+|...|+++++.|..|++-|++..
T Consensus       238 ~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  238 AVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             EECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            999996 89999999999999998855444455669999999999999999999999999999999865

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=5e-21  Score=183.32  Aligned_cols=239  Identities=15%  Similarity=0.254  Sum_probs=195.0

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      .+..+....|.++|.+++|+.||..+++|+.|+.+++||+.++                                     
T Consensus        62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-------------------------------------  104 (347)
T KOG0647|consen   62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-------------------------------------  104 (347)
T ss_pred             cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-------------------------------------
Confidence            4444666789999999999999999999999999999999973                                     


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                               .+..+..|.++|..+.|-+..   .|+|||.|++|+.||.+...++.++.....++++..-   ..+++.+
T Consensus       105 ---------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVa  172 (347)
T KOG0647|consen  105 ---------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVA  172 (347)
T ss_pred             ---------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEE
Confidence                     355667899999999998654   7999999999999999999999999999999999874   4688888


Q ss_pred             ecCCeEEEEecCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC--c---CC
Q 005956          369 SIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK--T---SG  440 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~--~---~~  440 (667)
                      ..+..|.+|+|+.+....   ....+-.+.|++..+|....+.|+-.|.+-+..+..... ...+.+.-|..  .   .-
T Consensus       173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~V  251 (347)
T KOG0647|consen  173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDV  251 (347)
T ss_pred             ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCce
Confidence            999999999998765432   234566799999999999999999999999999987543 22333333221  1   13


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      ..|++|+|+|. ...|++.+.||++.+||-....+......+..+|++.+|+.+|.++|-+
T Consensus       252 YaVNsi~FhP~-hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  252 YAVNSIAFHPV-HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             EEecceEeecc-cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            46889999997 5799999999999999966444444445589999999999999988755

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=3e-21  Score=202.89  Aligned_cols=272  Identities=21%  Similarity=0.343  Sum_probs=211.2

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ..+.+++.+|...|..+++.+.. .++++|.||+++||+-....                                    
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~------------------------------------   46 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ------------------------------------   46 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcc------------------------------------
Confidence            34567899999999999987554 89999999999999875411                                    


Q ss_pred             CCcccccCCcceeeeccccceEE-EEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLD-LAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~-l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~s  367 (667)
                             ....+.+.+|.+-|.. +++-+ ++ +|++|++|++|.+|...+..++..+. |...|.|++... ++. +++
T Consensus        47 -------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iS  117 (745)
T KOG0301|consen   47 -------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LIS  117 (745)
T ss_pred             -------cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEe
Confidence                   1234567788887777 88775 33 89999999999999999999998885 999999999775 554 999


Q ss_pred             EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      ||.|.++++|-+..... .+.+|...|.++..-|.+ .+++|+.|.+|++|.-.+  .. ..      ...|...|.+++
T Consensus       118 gSWD~TakvW~~~~l~~-~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~l-~t------f~gHtD~VRgL~  186 (745)
T KOG0301|consen  118 GSWDSTAKVWRIGELVY-SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--LL-KT------FSGHTDCVRGLA  186 (745)
T ss_pred             cccccceEEecchhhhc-ccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--hh-hh------hccchhheeeeE
Confidence            99999999997643322 378899999999999987 899999999999998632  21 11      334568999999


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCc
Q 005956          448 FSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV  526 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~  526 (667)
                      +-+++  .+++++.||.|+.|++. ..+..  .++|...+.+++...++..|+++++|++++||+..............+
T Consensus       187 vl~~~--~flScsNDg~Ir~w~~~ge~l~~--~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsi  262 (745)
T KOG0301|consen  187 VLDDS--HFLSCSNDGSIRLWDLDGEVLLE--MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSI  262 (745)
T ss_pred             EecCC--CeEeecCCceEEEEeccCceeee--eeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccce
Confidence            99984  79999999999999983 44444  445899999999888899999999999999999883322222233344


Q ss_pred             cceeEEccCCcEEEEecCC
Q 005956          527 RSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       527 ~~~~~fs~dg~~lav~w~~  545 (667)
                      +.+ .+-++|.+++-++.+
T Consensus       263 Wsa-~~L~NgDIvvg~SDG  280 (745)
T KOG0301|consen  263 WSA-KVLLNGDIVVGGSDG  280 (745)
T ss_pred             EEE-EEeeCCCEEEeccCc
Confidence            544 455556655554443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=3.9e-21  Score=198.56  Aligned_cols=291  Identities=18%  Similarity=0.348  Sum_probs=213.0

Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce----------eeeeeCCCCC--ccccCCCCeEEe
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA----------SCKSFTDDGG--FGSNAKEGKIKF  278 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~  278 (667)
                      +..+...+++|++.|.+|...|.|.+||+|+.||+|+||.+.++.+          .++.|.+...  +++.+....+.+
T Consensus       389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI  468 (733)
T ss_pred             cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence            3445567899999999999999999999999999999999998644          4666777663  223222222322


Q ss_pred             cccCCC-Ccee--------ecCC--------Ccccc-----cCCcceeeeccccceEEEEecCCC-eEEEEeCC---CcE
Q 005956          279 GKKKSS-HVPV--------VIPD--------EVFQI-----EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTV  332 (667)
Q Consensus       279 ~~~~~~-~~~~--------~~~~--------~~~~~-----~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I  332 (667)
                      ....-+ ....        ..+.        ..|.-     ....++....|...|..+.|+..| +|++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            221111 0000        0000        01111     122245566799999999999999 88877654   579


Q ss_pred             EEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEe
Q 005956          333 RMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGS  410 (667)
Q Consensus       333 ~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs  410 (667)
                      .|+++.....+.-|. ..+.|.++.|+| ...+|++++. ..|+|||+..+.++. +......|..++.+|.|..|++|+
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence            999998887776674 677899999999 7777777664 679999998877664 455566799999999999999999


Q ss_pred             cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-------c----ceeeEEe
Q 005956          411 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-------D----VIHKFKG  479 (667)
Q Consensus       411 ~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-------~----~~~~~~~  479 (667)
                      .|+.+..||+.-...+.+.+.+|      ...+++++|++. -.++++++.||++.|+...       +    .+.++++
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H------~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g  699 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLH------EKAVRSVAFHKR-YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG  699 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhh------hhhhhhhhhccc-cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence            99999999998766555444333      478999999997 5789999999999998532       1    2233334


Q ss_pred             CC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          480 LP--KSGSQMSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       480 ~~--~~~~v~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                      +.  +...|..+.|+|...+|++++.||+|++|
T Consensus       700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceeecccceEeecccCCCceEEecCCCceEEee
Confidence            21  22448899999999999999999999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=7.9e-21  Score=191.23  Aligned_cols=275  Identities=15%  Similarity=0.190  Sum_probs=217.6

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      -.+.|++|.|+|..++|++||.||+++||.+....                                           ..
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------------------------------N~  248 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------------------------------NP  248 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCcc-------------------------------------------Ch
Confidence            35789999999999999999999999999997410                                           12


Q ss_pred             cceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee---C-CCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          301 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---H-HNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~---h-~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                      .++.+.-...+|.+++|.|+|  .+++++..+.++.||+.+.+..+.-.   + ...+.....+| ++++|+..+..|.|
T Consensus       249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I  327 (514)
T KOG2055|consen  249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHI  327 (514)
T ss_pred             hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceE
Confidence            355565667899999999999  78999999999999999887765542   2 33567788889 99999999999999


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      .+....+++.+......+.|..++|+.||+.|++.+.+|.|.+||++.+..... +.-.+.     -.-++++.++++ .
T Consensus       328 ~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r-f~D~G~-----v~gts~~~S~ng-~  400 (514)
T KOG2055|consen  328 HLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR-FVDDGS-----VHGTSLCISLNG-S  400 (514)
T ss_pred             EeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE-EeecCc-----cceeeeeecCCC-c
Confidence            999999999998888999999999999999999999999999999998855433 222221     234677888886 7


Q ss_pred             EEEEEeCCCcEEEEECCccee------eEEeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCc----ccccc
Q 005956          455 RIMITSEDSKLRILDGVDVIH------KFKGLPKSGSQMSASFTTTGKHIISIGD--DCRVYVWNYDELCF----PSSKQ  522 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~~~~~------~~~~~~~~~~v~~v~~spdg~~l~sgs~--Dg~I~iWd~~~~~~----~~~~~  522 (667)
                      ++++|+..|.|.|||...+..      ......-...|+++.|++|++.||.+|.  +..+++-.+.....    +....
T Consensus       401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~  480 (514)
T KOG2055|consen  401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT  480 (514)
T ss_pred             eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC
Confidence            999999999999999653321      1111123567999999999999988874  57899988877543    22222


Q ss_pred             ccCccceeEEccCCcEEEEecCCC
Q 005956          523 KNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       523 ~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .-.-+.|+.|+|.|.++|++-...
T Consensus       481 ~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  481 KVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             cccceEEEEecCCCceEEeecCCC
Confidence            334577899999999999975443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=3.8e-21  Score=188.99  Aligned_cols=259  Identities=23%  Similarity=0.286  Sum_probs=198.1

Q ss_pred             ccccccEEEEEEcCCC--CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          219 QAHKGCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg--~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      -.|.+.|+.+.-++-|  .+.|+-++.|.|+||++...-.   .+...+..                          +-.
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---~l~~~~~~--------------------------~~~  198 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---ALSEPGLE--------------------------VKD  198 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---hhcCcccc--------------------------ccc
Confidence            3799999999988865  4777778999999999874210   00000000                          000


Q ss_pred             ccCCcceeeeccccceEEEEecC--CCeEEEEeCCCcEEEEecCCCeEeE----EeeCCCcEEEEEEeeCCCCEEEEEec
Q 005956          297 IEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLN----VFDHHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~--~~~l~s~s~Dg~I~iWd~~~~~~~~----~~~h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                      ...+|+.++.+|...=.+|+|||  .|.|++|..-+.|++|...++.-..    ...|+..|-.++|+|.....|++|+-
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            13578999999999999999999  4489999999999999998875332    22499999999999988899999999


Q ss_pred             CCeEEEEecCCC---eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          371 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       371 Dg~v~iwdl~~~---~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      ||+|+|||++.+   ..+....|...|+.|.|+..-.+||+|+.||+++|||++..+.......    .+-|..+|+++.
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~----fk~Hk~pItsie  354 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT----FKYHKAPITSIE  354 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee----EEeccCCeeEEE
Confidence            999999999998   4566688999999999999888999999999999999997765522222    233458999999


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCcc------------------eeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEE
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDV------------------IHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVY  508 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~------------------~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~  508 (667)
                      |+|.....|++++.|.+|.|||+.--                  .+.+-.+.....+..+.|++.- .+|++.+.|| +.
T Consensus       355 W~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fn  433 (440)
T KOG0302|consen  355 WHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FN  433 (440)
T ss_pred             eccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-ee
Confidence            99988889999999999999996410                  1112222234567778888753 4788888888 55


Q ss_pred             EEE
Q 005956          509 VWN  511 (667)
Q Consensus       509 iWd  511 (667)
                      ||.
T Consensus       434 Vfk  436 (440)
T KOG0302|consen  434 VFK  436 (440)
T ss_pred             EEE
Confidence            553

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.8e-21  Score=193.89  Aligned_cols=253  Identities=20%  Similarity=0.298  Sum_probs=185.5

Q ss_pred             CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceE
Q 005956          234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  313 (667)
Q Consensus       234 g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~  313 (667)
                      |+|+|.|+.|..|.|||+.-.....-.+.    +.....                    +.....++.-..-.+|+..|.
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~----LGs~~s--------------------k~~~k~~k~~~~~~gHTdavl  247 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVT----LGSKAS--------------------KKKKKKGKRSNSASGHTDAVL  247 (463)
T ss_pred             cceEEEeccCceeEEecccccccccccee----echhhh--------------------hhhhhhcccccccccchHHHH
Confidence            67999999999999999874221110000    000000                    000001111223458999999


Q ss_pred             EEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe-EEEecc
Q 005956          314 DLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWAD  389 (667)
Q Consensus       314 ~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~-~~~~~~  389 (667)
                      +|+|+..-  .|++||.|++|++||+.+++|..++. |...|.++.|+|....+|++|+.|++|.+.|.+... .-....
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk  327 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK  327 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence            99998765  89999999999999999999999998 888999999999999999999999999999998522 222334


Q ss_pred             cCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          390 VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       390 ~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                      ..+.|-.++|.|. ...+++++.||+++-+|++........+..      |...|.++++++.-+.++++++.|+.|++|
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA------HDDEISGLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe------ccCCcceEEecCCCCcceeeccccceEEEE
Confidence            5677899999995 467888999999999999988654444333      458999999999888899999999999999


Q ss_pred             ECCc--ceeeEEeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCC
Q 005956          469 DGVD--VIHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       469 d~~~--~~~~~~~~~~~~~v~~v~~spdg~~-l~sgs~Dg~I~iWd~~~~~  516 (667)
                      ++..  ...........+...|+++.|+-.+ ++.|+..+.++|||+.+..
T Consensus       402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            9652  2111111112334567777777654 6677777889999998764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=4.8e-21  Score=182.49  Aligned_cols=264  Identities=18%  Similarity=0.312  Sum_probs=191.3

Q ss_pred             ccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       219 ~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      ..|.|.|+++...+ .|+|+++|+.||.|.|||+++..-..             ..+.+.      ...++         
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e-------------~s~li~------k~~c~---------   91 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE-------------ASGLIA------KHKCI---------   91 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchh-------------hcccee------heeee---------
Confidence            36999999999987 68999999999999999998621000             000000      00000         


Q ss_pred             cCCcceeeeccccceEEEEecCC--CeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCC--CCEEEEEecCCe
Q 005956          298 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID--DNYFISGSIDGK  373 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~--~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d--~~~l~sgs~Dg~  373 (667)
                        -....-.+|.-.|.++.|-|-  |++.+++.|.+++|||..+-+....|...+.|+.-+++|..  ..++++|..|-.
T Consensus        92 --v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~  169 (397)
T KOG4283|consen   92 --VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ  169 (397)
T ss_pred             --ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence              001223478999999999883  39999999999999999999999999999999999999843  346788888899


Q ss_pred             EEEEecCCCeEEE-ecccCCceEEEEEeeCCCE-EEEEecCCcEEEEEecCCcceeeeEeecc--------ccCcCCCCe
Q 005956          374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHD--------RKKTSGNKI  443 (667)
Q Consensus       374 v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~-l~~gs~dg~i~l~d~~~~~~~~~~~~~~~--------~~~~~~~~I  443 (667)
                      |++.|+..|.... +.+|.+.|.++.|+|...+ |++|+.||.|++||++...-....+..+.        ....|.+++
T Consensus       170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv  249 (397)
T KOG4283|consen  170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV  249 (397)
T ss_pred             EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence            9999999998765 7789999999999997765 56799999999999986422222222222        234577899


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeC---CCCC------CeEE-----EEEcC--CCCEEEEEeCCCcE
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL---PKSG------SQMS-----ASFTT--TGKHIISIGDDCRV  507 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~---~~~~------~v~~-----v~~sp--dg~~l~sgs~Dg~I  507 (667)
                      .+++|+.++ .++++.+.|..+++|+..+....++..   .|..      .+.+     +.+-|  ++-+|++..+...|
T Consensus       250 ngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~i  328 (397)
T KOG4283|consen  250 NGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFV  328 (397)
T ss_pred             eeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEE
Confidence            999999996 899999999999999965432222110   0100      0111     11223  33456677777889


Q ss_pred             EEEEcC
Q 005956          508 YVWNYD  513 (667)
Q Consensus       508 ~iWd~~  513 (667)
                      +.|+..
T Consensus       329 r~l~~h  334 (397)
T KOG4283|consen  329 RRLSTH  334 (397)
T ss_pred             Eeeecc
Confidence            999987

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.2e-22  Score=213.85  Aligned_cols=238  Identities=24%  Similarity=0.411  Sum_probs=207.4

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      -.+++.+|...|.++..-..++.+++|+.|..+-+|.+..                                        
T Consensus        20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k----------------------------------------   59 (825)
T KOG0267|consen   20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK----------------------------------------   59 (825)
T ss_pred             cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccC----------------------------------------
Confidence            3466778999999999988899999999999999998874                                        


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                           ..++..|.+|..+|.++.|++.. +|++|+.+|+|++||++.++.++++ +|...+..++|+| -+.++++|+.|
T Consensus        60 -----p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStd  133 (825)
T KOG0267|consen   60 -----PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTD  133 (825)
T ss_pred             -----CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEecccccc
Confidence                 23355689999999999999988 8899999999999999999888776 5999999999999 89999999999


Q ss_pred             CeEEEEecCC-CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          372 GKVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       372 g~v~iwdl~~-~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      +.+++||++. |....+..|...+..+.|+|+|++++.|+.|..+++||+..+++..+       .+.|.+++..+.|+|
T Consensus       134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-------f~~~e~~v~sle~hp  206 (825)
T KOG0267|consen  134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE-------FKSHEGKVQSLEFHP  206 (825)
T ss_pred             ccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc-------cccccccccccccCc
Confidence            9999999995 44555667888899999999999999999999999999988776543       445678999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      .. .+++.|+.|++|++||+.+....-.+......|.+..|+|+++.+++|..+.
T Consensus       207 ~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  207 LE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             hh-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            85 7888999999999999997776666666788999999999999999886554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.87  E-value=5.3e-21  Score=201.01  Aligned_cols=234  Identities=26%  Similarity=0.448  Sum_probs=194.1

Q ss_pred             eeeccccccEEE-EEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          216 QEIQAHKGCIWT-LKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       216 ~~l~~H~~~I~~-v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      +.+.+|.+-|.+ ++|-+ ++..|++|+.|.+|.+|....                                        
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~----------------------------------------   90 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ----------------------------------------   90 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCC----------------------------------------
Confidence            456789999988 88885 555799999999999999885                                        


Q ss_pred             cccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                           ..|+.+|.||...|.++....++.+++||.|.++++|...  ++...+ +|+..|+++++.| .+ .+++|+.|.
T Consensus        91 -----~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDK  161 (745)
T KOG0301|consen   91 -----AEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-EN-TYVTGSADK  161 (745)
T ss_pred             -----CCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC-CC-cEEeccCcc
Confidence                 5678999999999999998888899999999999999875  333334 5999999999998 44 999999999


Q ss_pred             eEEEEecCCCeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          373 KVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       373 ~v~iwdl~~~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      +|++|.-  ++. ..+.+|.+.|..+++-+++ .|++++.||.|++|++.+. ...+   ++    .|..-|.++....+
T Consensus       162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge-~l~~---~~----ghtn~vYsis~~~~  230 (745)
T KOG0301|consen  162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE-VLLE---MH----GHTNFVYSISMALS  230 (745)
T ss_pred             eeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc-eeee---ee----ccceEEEEEEecCC
Confidence            9999976  444 4577899999999998864 6888999999999999543 3332   23    34578999996555


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      + ..++++++|++++||+...+.+.+..  ....|.++.+-++|. |++|+.||.||||...
T Consensus       231 ~-~~Ivs~gEDrtlriW~~~e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  231 D-GLIVSTGEDRTLRIWKKDECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             C-CeEEEecCCceEEEeecCceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            3 69999999999999998888777776  566899999988886 6677789999999876

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.4e-19  Score=175.07  Aligned_cols=276  Identities=12%  Similarity=0.151  Sum_probs=203.4

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec--CCeEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI--DGKVR  375 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~--Dg~v~  375 (667)
                      ++.+.|..-.+.|+++.|+++| +|++++.|.+++|||..+++.++++. +...|..+.|.. ..+.++.++.  |.+||
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceE
Confidence            3445566667889999999999 89999999999999999999999987 556788889988 6777777776  88999


Q ss_pred             EEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          376 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       376 iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      ..++.+.+.++ +.+|...|+.++.+|-+..+++++.|++|++||++..+.+.. +..        ..-..++|.|.| -
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-l~~--------~~~pi~AfDp~G-L  153 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-LNL--------SGRPIAAFDPEG-L  153 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-Eec--------CCCcceeECCCC-c
Confidence            99999999876 778999999999999999999999999999999997665432 111        223467899997 6


Q ss_pred             EEEEEeCCCcEEEEECCc----ceeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccC----
Q 005956          455 RIMITSEDSKLRILDGVD----VIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS----  525 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~~----~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~----  525 (667)
                      ++|++...+.|++||++.    +...+... ......+.+.|||||++|+.+...+.+++.|.-+|..........    
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence            666666666999999873    34444443 346678999999999999999999999999998887654432221    


Q ss_pred             ccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCC
Q 005956          526 VRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP  591 (667)
Q Consensus       526 ~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~  591 (667)
                      ..-...|.|||+++..+..+..-.+..+..  ... ...|..  +.........|.|....++.++
T Consensus       234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t--g~~-v~~~~~--~~~~~~~~~~fnP~~~mf~sa~  294 (311)
T KOG1446|consen  234 LPLSATFTPDSKFVLSGSDDGTIHVWNLET--GKK-VAVLRG--PNGGPVSCVRFNPRYAMFVSAS  294 (311)
T ss_pred             cceeEEECCCCcEEEEecCCCcEEEEEcCC--CcE-eeEecC--CCCCCccccccCCceeeeeecC
Confidence            223568999999998876654332222211  110 112211  1122344556777666666543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.8e-20  Score=179.00  Aligned_cols=233  Identities=19%  Similarity=0.283  Sum_probs=188.6

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .|.++|.+++|.++ ..+++|+-||.|+.+|+.++                                             
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~---------------------------------------------   85 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG---------------------------------------------   85 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCC---------------------------------------------
Confidence            49999999999974 57999999999999999863                                             


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                       ....+..|...|.+|.+++-. .+++||.|++|++||.....+...+.....|.|+..   .++.|+.|+.|..|.+||
T Consensus        86 -~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyD  161 (323)
T KOG1036|consen   86 -NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYD  161 (323)
T ss_pred             -cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEE
Confidence             234556799999999999754 999999999999999998777777777779999988   578999999999999999


Q ss_pred             cCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce-eeeEeeccccCc-----CCCCeEEEEEc
Q 005956          379 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKT-----SGNKITGIQFS  449 (667)
Q Consensus       379 l~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~~-----~~~~I~~l~~s  449 (667)
                      +++.....   -...+..+.|+++.|++..+++++-+|.+.+=.+...... .....+..|...     ...+|++|+|+
T Consensus       162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh  241 (323)
T KOG1036|consen  162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH  241 (323)
T ss_pred             cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence            99866432   4456678999999999999999999999877555544221 113333322222     23579999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC
Q 005956          450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD  503 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~  503 (667)
                      |- ...+++|+.||.|.+||+....+..+.+.....|.+++|+.+|..||+++.
T Consensus       242 p~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  242 PI-HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cc-cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            98 579999999999999999876666666556678999999999999999873

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.2e-20  Score=190.56  Aligned_cols=237  Identities=17%  Similarity=0.233  Sum_probs=189.4

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      -.++|.|++-+|+|.||+.|+..|.|.+|.+.+                                             +.
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss---------------------------------------------G~  114 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS---------------------------------------------GI  114 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEecc---------------------------------------------cc
Confidence            367899999999999999999999999999997                                             34


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC---------CCeEeEEee-CCCcEEEEEEeeC-CCCEEEEE
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------CNQCLNVFD-HHNYVTCVQFNPI-DDNYFISG  368 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~---------~~~~~~~~~-h~~~V~~l~f~p~-d~~~l~sg  368 (667)
                      .+..+.+|-..|++|.|+.|+ +|+|||.||.|.+|.+.         +-+++..|. |.-+|+.+...+. ...+++++
T Consensus       115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta  194 (476)
T KOG0646|consen  115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA  194 (476)
T ss_pred             HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence            567778999999999999999 99999999999999863         235666675 8889999998872 35689999


Q ss_pred             ecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      +.|.++++||+..+.++........+++++.+|-++.+.+|+.+|.|.+.++.......             ..+..=.+
T Consensus       195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~-------------~~v~~k~~  261 (476)
T KOG0646|consen  195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS-------------AGVNQKGR  261 (476)
T ss_pred             cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc-------------cccccccc
Confidence            99999999999999999888888999999999999999999999999988876433211             11111112


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCcc
Q 005956          449 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVR  527 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~  527 (667)
                      ++.+                   +....+.++.....|++++++.||..|++|+.||.|.|||+...++..... .+.++
T Consensus       262 ~~~~-------------------t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpV  322 (476)
T KOG0646|consen  262 HEEN-------------------TQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPV  322 (476)
T ss_pred             cccc-------------------ceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccc
Confidence            2221                   223344554344699999999999999999999999999999887755543 56666


Q ss_pred             ceeEEcc
Q 005956          528 SCEHFFS  534 (667)
Q Consensus       528 ~~~~fs~  534 (667)
                      +.+.+.|
T Consensus       323 tnL~i~~  329 (476)
T KOG0646|consen  323 TNLQINP  329 (476)
T ss_pred             ceeEeec
Confidence            6666644

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=2.3e-21  Score=196.19  Aligned_cols=238  Identities=22%  Similarity=0.368  Sum_probs=202.5

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      -..-|.++.+.|||+.|++||+-.++.|||+.....                                           .
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-------------------------------------------r  500 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-------------------------------------------R  500 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCc-------------------------------------------c
Confidence            456799999999999999999999999999985211                                           1


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      ...++....-...+|+.+||. ..++|..||.|.|||+.+...++.|+ |.+.+.||..++ +|..|.+|+.|.+||.||
T Consensus       501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehh
Confidence            112233334457788999998 88899999999999999999999996 999999999999 999999999999999999


Q ss_pred             cCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       379 l~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      +++++.....+....|.++-+.|.+.++++|-.++.+.+........  .++..      |...|.++.|.+-| +++++
T Consensus       580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--yqlhl------heScVLSlKFa~cG-kwfvS  650 (705)
T KOG0639|consen  580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--YQLHL------HESCVLSLKFAYCG-KWFVS  650 (705)
T ss_pred             hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc--eeecc------cccEEEEEEecccC-ceeee
Confidence            99998887778888999999999999999999999998887764332  12222      24789999999996 89999


Q ss_pred             EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      ++.|+-+..|.+.-....|+.. ....|.++.+|.|.+||+||+.|....||.+
T Consensus       651 tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  651 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999987666677664 6789999999999999999999988888865

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=1.6e-20  Score=195.68  Aligned_cols=268  Identities=19%  Similarity=0.331  Sum_probs=193.7

Q ss_pred             EEEEcCC---CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          227 TLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       227 ~v~fspd---g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      +..|++.   ...||.+.+||.|.++|....                                       .+.+++..+.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~---------------------------------------~fr~ee~~lk   94 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSI---------------------------------------VFRLEERQLK   94 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhh---------------------------------------hcchhhhhhc
Confidence            3667652   348999999999999998751                                       1222344466


Q ss_pred             eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE---eeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~---~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      ....|...|.++.|.|.. .|++++.|.++++||+.+.++...   ++|...|.+++|.|.+...|++|+.||.|.|||+
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            777899999999999955 999999999999999999988765   4799999999999999999999999999999998


Q ss_pred             CCCeEE----------------------------EecccCCceEE---EEEeeCCCEEEEEec-CCcEEEEEecCCccee
Q 005956          380 CEKRVV----------------------------DWADVRDVISA---ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL  427 (667)
Q Consensus       380 ~~~~~~----------------------------~~~~~~~~v~~---v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~  427 (667)
                      +....-                            .+..+...|..   +.+..|...||+++. |+.|++||++.+....
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            653210                            11112233444   555578888988776 9999999999876654


Q ss_pred             eeEeeccc-cCcC---CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCCCEEE
Q 005956          428 EKVDFHDR-KKTS---GNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHII  499 (667)
Q Consensus       428 ~~~~~~~~-~~~~---~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg~~l~  499 (667)
                      .+-..... ...+   ...++++.....| .+|++.+.|+.|++|++..    ....+.+......-..-..+|++.+|+
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~  333 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL  333 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence            42221111 1111   2456777777776 6777777799999999873    344444443444444556799999999


Q ss_pred             EEeCCCcEEEEEcCCCCccccc--cccCccceeEEcc
Q 005956          500 SIGDDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFS  534 (667)
Q Consensus       500 sgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~fs~  534 (667)
                      +|+.|...++|.+...+.....  .+...+.++.|.|
T Consensus       334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             ccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            9999999999999998765432  2233344445554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.87  E-value=7e-21  Score=191.91  Aligned_cols=218  Identities=18%  Similarity=0.320  Sum_probs=177.0

Q ss_pred             ceeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      .-.|.+|++.=+.+.|++... +|++|+.|++|.+||+.......                                   
T Consensus       170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-----------------------------------  214 (422)
T KOG0264|consen  170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED-----------------------------------  214 (422)
T ss_pred             ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC-----------------------------------
Confidence            347889999888999998644 89999999999999998532100                                   


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCC--CeEeEEe-eCCCcEEEEEEeeCCCCEEEEE
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~--~~~~~~~-~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                         ..-.+...+.+|...|.+++|++-.  .|++++.|+.+.|||+++  .++.... .|...|.|++|+|.++.+|++|
T Consensus       215 ---~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~  291 (422)
T KOG0264|consen  215 ---KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG  291 (422)
T ss_pred             ---ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec
Confidence               0124577889999999999999866  899999999999999995  4444444 4999999999999999999999


Q ss_pred             ecCCeEEEEecCCCe--EEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCccee----------eeEeeccc
Q 005956          369 SIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL----------EKVDFHDR  435 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~--~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~----------~~~~~~~~  435 (667)
                      +.|++|++||++...  +..+..|.+.|..|.|+|. ...|++++.|+.+.+||+..-....          +.+-.   
T Consensus       292 S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~---  368 (422)
T KOG0264|consen  292 SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI---  368 (422)
T ss_pred             cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE---
Confidence            999999999999744  5568899999999999995 4678888999999999997433221          11111   


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV  473 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~  473 (667)
                      ...|...|..+.|+|..+..|++.+.|+.+.||.....
T Consensus       369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             ecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence            23456889999999999899999999999999997643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.1e-19  Score=174.59  Aligned_cols=251  Identities=23%  Similarity=0.354  Sum_probs=187.0

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      ..+|.+-|+++.|.+-|+.+|||+.|++|+|||......                                         
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------------------------   47 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------------------------   47 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------------------------
Confidence            358999999999999999999999999999999753111                                         


Q ss_pred             cCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCC-------e--EeEEe-eCCCcEEEEEEeeC-CCC
Q 005956          298 EESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCN-------Q--CLNVF-DHHNYVTCVQFNPI-DDN  363 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~-------~--~~~~~-~h~~~V~~l~f~p~-d~~  363 (667)
                      ........+.|.+.|..+.|.+.  | .+++++.|+++.||.=...       +  ...++ .....|+.+.|.|. -|-
T Consensus        48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL  127 (361)
T KOG2445|consen   48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL  127 (361)
T ss_pred             ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce
Confidence            12334567889999999999653  3 8999999999999964211       1  12222 36678999999983 356


Q ss_pred             EEEEEecCCeEEEEecCCCe-EEE-------------ecccCCceEEEEEeeC---CCEEEEEecC-----CcEEEEEec
Q 005956          364 YFISGSIDGKVRIWGVCEKR-VVD-------------WADVRDVISAICYIPD---GKGFIVGSIT-----GTCHFYKAS  421 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl~~~~-~~~-------------~~~~~~~v~~v~~spd---g~~l~~gs~d-----g~i~l~d~~  421 (667)
                      .+++++.||.+|||+...-- +..             ...+.....|+.|+|.   ...|++|+.+     +.+.||...
T Consensus       128 klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~  207 (361)
T KOG2445|consen  128 KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN  207 (361)
T ss_pred             EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec
Confidence            78999999999999875421 111             1124556788999874   4678888876     588899887


Q ss_pred             CCcceeeeEeeccccCcCCCCeEEEEEccCCC---eEEEEEeCCCcEEEEECCcc-------------------eeeEE-
Q 005956          422 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVDV-------------------IHKFK-  478 (667)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~---~~l~~~s~dg~I~iwd~~~~-------------------~~~~~-  478 (667)
                      .+..+...+.   ....+..+|+.++|.|+-+   ..|++++.|| |+||.+...                   +.+.. 
T Consensus       208 e~~rKw~kva---~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~  283 (361)
T KOG2445|consen  208 ENGRKWLKVA---ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE  283 (361)
T ss_pred             CCcceeeeeh---hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence            6654433221   1235679999999999732   5788999999 999986520                   11111 


Q ss_pred             eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          479 GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       479 ~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ...|.+.|..+.|+-.|..|++.|.||.|++|...
T Consensus       284 ~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  284 LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            33588899999999999999999999999999754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=1.4e-19  Score=183.76  Aligned_cols=308  Identities=22%  Similarity=0.302  Sum_probs=222.7

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC--C-ccccCCCCeEEecccCCCCceeecC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--G-FGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      .+...+|.+.|.+++.-.+|.+| +|+.|+.|..||-. .......-.|+.  . .......+.+.+.. ..+....   
T Consensus       280 ~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGT-trN~iL~---  353 (626)
T KOG2106|consen  280 SKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGT-TRNFILQ---  353 (626)
T ss_pred             EeEeeecCCceEEEEEecCccEe-ecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEee-ccceEEE---
Confidence            34444999999999999999755 59999999999932 111110001110  0 00011111121111 1111111   


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                         -.+......+..+|....+.++.+|+. .|++++.|+.+++|+  ..++.......+++.|+.|+| .+ .++.|..
T Consensus       354 ---Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~  426 (626)
T KOG2106|consen  354 ---GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTA  426 (626)
T ss_pred             ---eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeec
Confidence               012233455667999999999999988 999999999999999  667777777889999999999 77 9999999


Q ss_pred             CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      .|...+.|.++...+.......+++++.|+|+|.+||+|+.|+.|++|.+..+..........     +..+|+.+.|++
T Consensus       427 ~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-----~gs~ithLDwS~  501 (626)
T KOG2106|consen  427 TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-----SGSPITHLDWSS  501 (626)
T ss_pred             cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-----cCceeEEeeecC
Confidence            999999999998888766668999999999999999999999999999998877766533222     238999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcce----------------eeEE--eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          451 DESQRIMITSEDSKLRILDGVDVI----------------HKFK--GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~----------------~~~~--~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      |+ +++.+-+.|-.|..|....+.                .-|.  +..+...+..++-+.+.+.+|+|.+.|+|++|..
T Consensus       502 Ds-~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y  580 (626)
T KOG2106|consen  502 DS-QFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY  580 (626)
T ss_pred             CC-ceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence            95 999999999999999533211                1111  1234555667777888999999999999999998


Q ss_pred             CCCCccccc----cccCccceeEEccCCcEEEE
Q 005956          513 DELCFPSSK----QKNSVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       513 ~~~~~~~~~----~~~~~~~~~~fs~dg~~lav  541 (667)
                      .-.......    .......+++|..+...+..
T Consensus       581 Pc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~  613 (626)
T KOG2106|consen  581 PCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLIS  613 (626)
T ss_pred             ccCCCcccceeeccccceeEEEEEeeCCceEEe
Confidence            765544432    33455667788886665554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=2.7e-20  Score=187.31  Aligned_cols=294  Identities=15%  Similarity=0.205  Sum_probs=221.4

Q ss_pred             ccccccccceeeccccccEEEEEEcCCC--CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCC
Q 005956          207 MEFTALYTSQEIQAHKGCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  284 (667)
Q Consensus       207 ~~~~~~~~~~~l~~H~~~I~~v~fspdg--~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (667)
                      +.+..+...++++-|.+.|++++|+|..  +++|+|..-|.|-+||+.+...                            
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----------------------------  222 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----------------------------  222 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----------------------------
Confidence            4455667778889999999999999965  4899999999999999953111                            


Q ss_pred             CceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEee
Q 005956          285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNP  359 (667)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p  359 (667)
                                   ....+..+..|..+|.+|.|+|.+  .+++.|+||+|++-|++++..-..+.   ....+..++|+.
T Consensus       223 -------------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~  289 (498)
T KOG4328|consen  223 -------------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA  289 (498)
T ss_pred             -------------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC
Confidence                         123356678999999999999987  99999999999999999775444333   344677888888


Q ss_pred             CCCCEEEEEecCCeEEEEecCCCeE--EEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceee-eEeeccc
Q 005956          360 IDDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDR  435 (667)
Q Consensus       360 ~d~~~l~sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~  435 (667)
                       +...++.+..=|.+.+||++++..  ..+.-|...|+.++++|- ..+|++++.|++.+|||++....... .+.    
T Consensus       290 -e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls----  364 (498)
T KOG4328|consen  290 -ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS----  364 (498)
T ss_pred             -CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee----
Confidence             566666666667999999998664  346677789999999994 56789999999999999986554432 122    


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC----c--ceeeEEe-CC--CCCCeEEEEEcCCCCEEEEEeCCCc
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV----D--VIHKFKG-LP--KSGSQMSASFTTTGKHIISIGDDCR  506 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~----~--~~~~~~~-~~--~~~~v~~v~~spdg~~l~sgs~Dg~  506 (667)
                      ...|...|.+..|+|.++. |++++.|..|+|||..    .  ....+.- ..  ..-....+.|.|+..+|++|-.-..
T Consensus       365 t~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~  443 (498)
T KOG4328|consen  365 TLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP  443 (498)
T ss_pred             cccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcc
Confidence            2345688999999999866 9999999999999973    1  1111111 00  1123456789999999999999999


Q ss_pred             EEEEEcCCCCcccccc---ccCccceeEEccCCcEEEEecCCCC
Q 005956          507 VYVWNYDELCFPSSKQ---KNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       507 I~iWd~~~~~~~~~~~---~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      |-|+|-+.++.....+   ...+.....|+|-+..++.+.+..+
T Consensus       444 IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G  487 (498)
T KOG4328|consen  444 IDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG  487 (498)
T ss_pred             eeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence            9999999887544433   2345566789998886776655443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=4e-20  Score=194.34  Aligned_cols=372  Identities=18%  Similarity=0.211  Sum_probs=252.2

Q ss_pred             ccccceeeccccccEEEEEEcCCCC---EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~---~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      .+....++.||++.|.+++|..-+.   +|||+|.|..||||.+.-..... ...         .......   ..+ ..
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~-~~~---------~e~~~t~---~~~-~~  245 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED-SNE---------REDSLTT---LSN-LP  245 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc-ccc---------ccccccc---ccC-Cc
Confidence            4456678999999999999987554   99999999999999986422110 000         0000000   000 00


Q ss_pred             eecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE--eE--Eee----CCCcEEEEEEe
Q 005956          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LN--VFD----HHNYVTCVQFN  358 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~--~~--~~~----h~~~V~~l~f~  358 (667)
                      +.......+..-..-..+.||++-|.++.|+|.+ .|+++++|+++.+|.-.+..-  +.  .++    .....+...|+
T Consensus       246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~  325 (764)
T KOG1063|consen  246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS  325 (764)
T ss_pred             eeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence            0000000000001113356999999999999999 999999999999998765522  22  222    23468899999


Q ss_pred             eCCCCEEEEEecCCeEEEEecCCCe----EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc
Q 005956          359 PIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (667)
Q Consensus       359 p~d~~~l~sgs~Dg~v~iwdl~~~~----~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~  434 (667)
                      | +++.+++-+.-|-.++|-.....    .....+|-+.|+.++|+|.|.+|++.+.|-+-|+|-.-..+..   +.-..
T Consensus       326 ~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~---wHEia  401 (764)
T KOG1063|consen  326 P-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE---WHEIA  401 (764)
T ss_pred             C-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc---eeeec
Confidence            9 89999999999999999833322    1235678899999999999999999999999999976633332   33334


Q ss_pred             ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-----------------------------------e-----
Q 005956          435 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-----------------------------------I-----  474 (667)
Q Consensus       435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-----------------------------------~-----  474 (667)
                      +...|+..++|++|-+. ...+++|.....+|+|+..+.                                   .     
T Consensus       402 RPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~  480 (764)
T KOG1063|consen  402 RPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN  480 (764)
T ss_pred             ccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence            45667899999999985 367888888888999953110                                   0     


Q ss_pred             ---e---------------------------------eEEeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcC
Q 005956          475 ---H---------------------------------KFKGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYD  513 (667)
Q Consensus       475 ---~---------------------------------~~~~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~  513 (667)
                         .                                 .-+..+|...|.+++.+|+|++||+++..     ..|++|+..
T Consensus       481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~  560 (764)
T KOG1063|consen  481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA  560 (764)
T ss_pred             cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc
Confidence               0                                 00223588889999999999999999754     469999998


Q ss_pred             CCCccc-cccccCccceeEEccCCcEEEEecCCCCcccccccCCCCC-CcCccCcCCCCCCcccCCCcccCCCCCCCCCC
Q 005956          514 ELCFPS-SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLR-DCSQKWDNLETAPWIRDSERFSLGSWFSNDGP  591 (667)
Q Consensus       514 ~~~~~~-~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~  591 (667)
                      +-.... ...+...++.+.|||||++|+....+..-.+.-....-.+ ..|   ....++....-...++|++.||+.++
T Consensus       561 ~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f---a~~k~HtRIIWdcsW~pde~~FaTaS  637 (764)
T KOG1063|consen  561 NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF---ACLKAHTRIIWDCSWSPDEKYFATAS  637 (764)
T ss_pred             chhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh---ccccccceEEEEcccCcccceeEEec
Confidence            765543 3445566777899999999998776655443221111111 111   22345555666778999999999887


Q ss_pred             CCCC-CCCCCCcCC
Q 005956          592 CRGS-ATWPAEKLP  604 (667)
Q Consensus       592 ~~g~-~~w~~~~~~  604 (667)
                      ..-+ ..|.+++.+
T Consensus       638 RDK~VkVW~~~~~~  651 (764)
T KOG1063|consen  638 RDKKVKVWEEPDLR  651 (764)
T ss_pred             CCceEEEEeccCch
Confidence            5444 568777653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=4.1e-19  Score=183.66  Aligned_cols=257  Identities=12%  Similarity=0.096  Sum_probs=183.4

Q ss_pred             CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceE
Q 005956          234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  313 (667)
Q Consensus       234 g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~  313 (667)
                      +..++|++.|+.|++||+.++                                             +.+..+.+|.. +.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~---------------------------------------------~~~~~~~~~~~-~~   34 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL---------------------------------------------EVTRTFPVGQR-PR   34 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC---------------------------------------------ceEEEEECCCC-CC
Confidence            357899999999999998753                                             23445554443 67


Q ss_pred             EEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE-EecCCeEEEEecCCCeEEEeccc
Q 005956          314 DLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGVCEKRVVDWADV  390 (667)
Q Consensus       314 ~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s-gs~Dg~v~iwdl~~~~~~~~~~~  390 (667)
                      +++|+|++ .+ ++++.++.|++||+.+++.+..+.....+..++|+| +++.+++ ++.++.|++||+.+.+.+.....
T Consensus        35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~  113 (300)
T TIGR03866        35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV  113 (300)
T ss_pred             ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence            89999998 55 567789999999999998887776444567889999 7776654 45689999999999877665554


Q ss_pred             CCceEEEEEeeCCCEEEEEecCC-cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          391 RDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       391 ~~~v~~v~~spdg~~l~~gs~dg-~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      ...+.+++|+|+|+.++++..++ .+.+||..+...... .. .      ...+..++|+|++..+++++..++.|++||
T Consensus       114 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-~~-~------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d  185 (300)
T TIGR03866       114 GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-VL-V------DQRPRFAEFTADGKELWVSSEIGGTVSVID  185 (300)
T ss_pred             CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-EE-c------CCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence            55678899999999999988775 467789876544321 11 1      134577999999743445555799999999


Q ss_pred             CCcce--eeEEeCC-----CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEE
Q 005956          470 GVDVI--HKFKGLP-----KSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       470 ~~~~~--~~~~~~~-----~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav  541 (667)
                      +.+..  ..+....     .......++|+|++++++++ +.++.|.+||..+++.............+.|+|+|..|++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence            87543  2222211     11223568899999986554 4567899999988765433222334557799999999887


Q ss_pred             ecCC
Q 005956          542 QWPG  545 (667)
Q Consensus       542 ~w~~  545 (667)
                      +...
T Consensus       266 ~~~~  269 (300)
T TIGR03866       266 TNGV  269 (300)
T ss_pred             EcCC
Confidence            6543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=7.1e-20  Score=192.89  Aligned_cols=227  Identities=15%  Similarity=0.216  Sum_probs=186.4

Q ss_pred             ccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956          309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      ...|+++.|+++| +|+.|..+|.|.|||+.+.+.+..+.  |...|-+++|+   +..+.+|+.|+.|..+|++..+..
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh
Confidence            7899999999999 99999999999999999888887774  78899999995   689999999999999999986643


Q ss_pred             -E-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe--C
Q 005956          386 -D-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--E  461 (667)
Q Consensus       386 -~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s--~  461 (667)
                       . ...|...|..+.|++|++++|+|+.|+.+.|||.........       ...|...|..++|+|--..+||+|+  .
T Consensus       294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~-------~~~H~aAVKA~awcP~q~~lLAsGGGs~  366 (484)
T KOG0305|consen  294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT-------FTEHTAAVKALAWCPWQSGLLATGGGSA  366 (484)
T ss_pred             hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE-------EeccceeeeEeeeCCCccCceEEcCCCc
Confidence             3 677899999999999999999999999999999955444332       2334589999999998777888874  6


Q ss_pred             CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCccccc-cccCccceeEEccCCcE
Q 005956          462 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVS  538 (667)
Q Consensus       462 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~  538 (667)
                      |++|++||.......-.. .....|.++.|++..+-|+++.  .++.|.||++.+.+..... .+...+-+++.+|||..
T Consensus       367 D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~  445 (484)
T KOG0305|consen  367 DRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGET  445 (484)
T ss_pred             ccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCE
Confidence            999999998855443333 3578899999999997777653  4678999999987654433 34455777899999999


Q ss_pred             EEEecCCC
Q 005956          539 VAVQWPGI  546 (667)
Q Consensus       539 lav~w~~~  546 (667)
                      ++++..+.
T Consensus       446 i~t~a~DE  453 (484)
T KOG0305|consen  446 IVTGAADE  453 (484)
T ss_pred             EEEecccC
Confidence            99876554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=5.2e-19  Score=179.66  Aligned_cols=265  Identities=18%  Similarity=0.345  Sum_probs=212.1

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC---------------ceeeeeeCCCCCccccCCCCeEEecccC
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---------------AASCKSFTDDGGFGSNAKEGKIKFGKKK  282 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (667)
                      .+.-...|....|+|.+.-|+.....|.+..|+...+               ...|+.|.+++..+.....|.+.+|.+.
T Consensus       196 vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  196 VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG  275 (626)
T ss_pred             ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC
Confidence            3456678999999997665555555688999988753               3567889999999999999999988875


Q ss_pred             CCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecC------------------------
Q 005956          283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG------------------------  338 (667)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~------------------------  338 (667)
                      ....               .+....|.+.|.+|+...+|.|++|+.|..|..||-.                        
T Consensus       276 ~~~~---------------~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~  340 (626)
T KOG2106|consen  276 TNRI---------------SKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG  340 (626)
T ss_pred             CceE---------------EeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCC
Confidence            4332               3333489999999999999999999999999999821                        


Q ss_pred             -----------------CCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEee
Q 005956          339 -----------------CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP  401 (667)
Q Consensus       339 -----------------~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp  401 (667)
                                       ++-.+.++.|....+.++.+| +.+.+++++.|+.+++|+  ..++.-.....+++.|+.|+|
T Consensus       341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp  417 (626)
T KOG2106|consen  341 DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP  417 (626)
T ss_pred             cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC
Confidence                             111222345888899999999 899999999999999999  666666666778899999999


Q ss_pred             CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEE--e
Q 005956          402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK--G  479 (667)
Q Consensus       402 dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~--~  479 (667)
                      .| .+|+|+..|...+.|..+..+...  ...      +.+++.+.|+|+| .+|++++.|+.|+||-+...-.++.  +
T Consensus       418 sg-~va~Gt~~G~w~V~d~e~~~lv~~--~~d------~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~  487 (626)
T KOG2106|consen  418 SG-VVAVGTATGRWFVLDTETQDLVTI--HTD------NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVG  487 (626)
T ss_pred             cc-eEEEeeccceEEEEecccceeEEE--Eec------CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEee
Confidence            99 999999999999999988554432  111      4899999999996 8999999999999998653222222  2


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          480 LPKSGSQMSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       480 ~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                      ..+..+|+.+.||+|++||.+-+.|-.|..|
T Consensus       488 k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  488 KCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            2245899999999999999999999999999

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=1.1e-20  Score=184.92  Aligned_cols=232  Identities=17%  Similarity=0.246  Sum_probs=185.4

Q ss_pred             cceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          301 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      .+..+.||.+.|.+++=+|..  .+++|+.||.|+|||+....++..+. |.+.|..|.+..   ..+++++.|.+|+.|
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQW  134 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeee
Confidence            466789999999999999987  89999999999999999999999997 899999999964   678889999999999


Q ss_pred             ecCCC---------------------------eEEE-e-----------cccCCceEEEEEeeCC-CEEEEEecCCcEEE
Q 005956          378 GVCEK---------------------------RVVD-W-----------ADVRDVISAICYIPDG-KGFIVGSITGTCHF  417 (667)
Q Consensus       378 dl~~~---------------------------~~~~-~-----------~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l  417 (667)
                      -+...                           +.+. |           .-..+.|.++.|+|.. ..|+++..|+.|.+
T Consensus       135 k~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL  214 (433)
T KOG0268|consen  135 KIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL  214 (433)
T ss_pred             eccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence            74321                           1111 1           1112447888899965 45666779999999


Q ss_pred             EEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCC
Q 005956          418 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTT  494 (667)
Q Consensus       418 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spd  494 (667)
                      ||++........+ +       ...-+.|+|+|. ...++++++|..++.||++.   ....+++  |...|++++|||.
T Consensus       215 yD~R~~~Pl~KVi-~-------~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~d--hvsAV~dVdfspt  283 (433)
T KOG0268|consen  215 YDLRQASPLKKVI-L-------TMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPT  283 (433)
T ss_pred             EecccCCccceee-e-------eccccceecCcc-ccceeeccccccceehhhhhhcccchhhcc--cceeEEEeccCCC
Confidence            9999887654422 1       134578999995 57889999999999999874   4555555  7889999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCcEEEEecCCC
Q 005956          495 GKHIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       495 g~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      |+-+++||.|.+|+||.++.+...-..+++  ..+.|+.|+.|++++..++...
T Consensus       284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence            999999999999999999998776666554  3466789999999888765544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.4e-20  Score=196.32  Aligned_cols=248  Identities=14%  Similarity=0.265  Sum_probs=201.3

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ...++.|.+.|+.+....+|+.|++++.|-+|++|+...+.                                       
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~---------------------------------------  106 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN---------------------------------------  106 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc---------------------------------------
Confidence            45678999999999999999999999999999999998532                                       


Q ss_pred             ccccCCcceeeeccccceEEEEe-cCCC-eEEEEeCCCcEEEEecCCCe--EeEEe----------eCCCcEEEEEEeeC
Q 005956          295 FQIEESPLQELHGHKGDVLDLAW-SNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF----------DHHNYVTCVQFNPI  360 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~-s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~----------~h~~~V~~l~f~p~  360 (667)
                          .-+..++..|.+.|.|+++ .++. .+++||.|+.|.|||+.++.  .+..+          ++...|++++.++ 
T Consensus       107 ----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-  181 (735)
T KOG0308|consen  107 ----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-  181 (735)
T ss_pred             ----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-
Confidence                1235677889999999999 6666 89999999999999999772  22222          3677899999999 


Q ss_pred             CCCEEEEEecCCeEEEEecCCCe-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      .+..|++|+..+.+++||.++++ ++++.+|.+.|.++-.++||+.+++++.||+|++||+........ +..+      
T Consensus       182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T-~~vH------  254 (735)
T KOG0308|consen  182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT-YIVH------  254 (735)
T ss_pred             cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee-EEec------
Confidence            88999999999999999999865 567889999999999999999999999999999999987666544 2233      


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      ...|.+++.+|+ -.++++|+.|+.|..=|+++............+|..+..+...+-+-++..|+.|+-|...-
T Consensus       255 ~e~VWaL~~~~s-f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  255 KEGVWALQSSPS-FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             cCceEEEeeCCC-cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence            356999999987 58999999999999999886433222223456666666664444446667788898887653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.1e-19  Score=177.00  Aligned_cols=287  Identities=18%  Similarity=0.249  Sum_probs=211.0

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      +..+.+.+|.+.|+++.||.++++||+||.|..++||++...-..                                   
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-----------------------------------   91 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-----------------------------------   91 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-----------------------------------
Confidence            345567799999999999999999999999999999999752110                                   


Q ss_pred             CcccccCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCC---cEEEEEEeeCCCCEEEE
Q 005956          293 EVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       293 ~~~~~~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~---~V~~l~f~p~d~~~l~s  367 (667)
                          -..+|+.... .|...|.||+|.-.+ +|++|+.+++|.+.|+++.+.+.++.|..   .|+.+..+| .++.|++
T Consensus        92 ----k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~  166 (609)
T KOG4227|consen   92 ----KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIV  166 (609)
T ss_pred             ----cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEE
Confidence                0124555444 356899999998877 99999999999999999999999998776   999999999 6899999


Q ss_pred             EecCCeEEEEecCCCe----EEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          368 GSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~----~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      .+.++.|.+||++..+    ++...........+-|+|- ..+|++.+..|-+-+||.+.......+.............
T Consensus       167 ~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~  246 (609)
T KOG4227|consen  167 VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTE  246 (609)
T ss_pred             EecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchh
Confidence            9999999999998755    4445566677888999994 5678889999999999998766544322211111111233


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeC------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ..++.|+|+| +.+++--....-.+||... ....++..      .+...+.+++|--| ..|++|+.+-.|+||.+...
T Consensus       247 ~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  247 WMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             hhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCC
Confidence            4678999997 5666666666667788653 33333332      23346778888644 45999999999999998642


Q ss_pred             Cc------------------------cccccccCccceeEEccCCcEEEE
Q 005956          516 CF------------------------PSSKQKNSVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       516 ~~------------------------~~~~~~~~~~~~~~fs~dg~~lav  541 (667)
                      ..                        .....+..+...+.|+|...+|+.
T Consensus       325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~S  374 (609)
T KOG4227|consen  325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVS  374 (609)
T ss_pred             ccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEec
Confidence            11                        111234556666788887766654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=7.6e-20  Score=170.39  Aligned_cols=235  Identities=20%  Similarity=0.229  Sum_probs=182.3

Q ss_pred             eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE---eEEe-eCCCcEEEEEEe-eCCCCEEEEEecCCeEEEEec
Q 005956          306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF-DHHNYVTCVQFN-PIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~---~~~~-~h~~~V~~l~f~-p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      ..|.+.|.++...--| +|+||+.|++|+|+.++.+..   +..+ +|.++|+.++|. |.-|.+|++++.||+|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            4788999888877777 999999999999999986543   3333 599999999995 567899999999999999998


Q ss_pred             CCCeEE---EecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCC-cceeeeEeeccccCcCCCCeEEEEEccC--
Q 005956          380 CEKRVV---DWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQFSRD--  451 (667)
Q Consensus       380 ~~~~~~---~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~-~~~~~~~~~~~~~~~~~~~I~~l~~sp~--  451 (667)
                      .+++-.   ....|...|++++|-|.  |-.|++++.||.|.+.+.+.. ......+     ...|.-.|++++|.|.  
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki-----~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI-----VFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh-----hhccccccceeeecCcCC
Confidence            887533   46678899999999995  567899999999999999876 2222211     3345577999999886  


Q ss_pred             -C----------CeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEc
Q 005956          452 -E----------SQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYVWNY  512 (667)
Q Consensus       452 -g----------~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~Dg~I~iWd~  512 (667)
                       |          .+.|++|+.|+.|+||+...    ..+.+.+  |...|..++|.|.-    .+||+++.||+|.||..
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence             2          15699999999999999764    2333444  89999999999975    57999999999999998


Q ss_pred             CCCCcccccc----ccCccceeEEccCCcEEEEecCCCC
Q 005956          513 DELCFPSSKQ----KNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       513 ~~~~~~~~~~----~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      .....+....    -..+.-.+.|+..|.+||++.....
T Consensus       241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk  279 (299)
T KOG1332|consen  241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK  279 (299)
T ss_pred             cCccCcccccccccCCcceEEEEEeccccEEEEecCCcE
Confidence            7443333321    1223334689999999999766543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.9e-19  Score=172.11  Aligned_cols=277  Identities=19%  Similarity=0.246  Sum_probs=193.2

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-----eEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-----QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~  375 (667)
                      +..++||.+.|++++|+.|| .|+|++.|++|+||+++..     ++++.--.-+..+.+.|.|....++++.-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            56789999999999999999 9999999999999999753     23332223346788999994444555666667899


Q ss_pred             EEecCCCe-------EEEec------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          376 IWGVCEKR-------VVDWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       376 iwdl~~~~-------~~~~~------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +|-+...+       .+.+.      .|.-.+..+-.-.++.+|++++.|..|.+|++++..+.  .+.      +....
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~--~id------tnq~~  230 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ--SID------TNQSS  230 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceee--eec------ccccc
Confidence            99775432       11111      23344555666667899999999999999999943332  222      22245


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEEC--------CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDG--------VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~--------~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      -+..+.+|+| +++++++.--.|++|..        ....+.+...+|...|..++|+++...+++.|.||+++|||.+-
T Consensus       231 n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  231 NYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             ccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            5678899996 89999999999999973        24456667777999999999999999999999999999999753


Q ss_pred             CC----ccc-------ccccc-CccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCC-CCCCcccCCCccc
Q 005956          515 LC----FPS-------SKQKN-SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL-ETAPWIRDSERFS  581 (667)
Q Consensus       515 ~~----~~~-------~~~~~-~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~fS  581 (667)
                      ..    -+.       ..+.. ...--+..+|.|.+||++...+   +..+++....    ..+.. ..+........|+
T Consensus       310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~---l~~~~se~g~----~~~~~e~~h~~~Is~is~~  382 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSD---LKVFASEDGK----DYPELEDIHSTTISSISYS  382 (420)
T ss_pred             eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCc---eEEEEcccCc----cchhHHHhhcCceeeEEec
Confidence            21    111       11111 1122478999999999987654   3333332211    01111 1234456778899


Q ss_pred             CCCCCCCCCCCCC
Q 005956          582 LGSWFSNDGPCRG  594 (667)
Q Consensus       582 ~~~~~~~~g~~~g  594 (667)
                      ++++|.+.-.+|-
T Consensus       383 ~~g~~~atcGdr~  395 (420)
T KOG2096|consen  383 SDGKYIATCGDRY  395 (420)
T ss_pred             CCCcEEeeeccee
Confidence            9999998766554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.2e-19  Score=192.85  Aligned_cols=229  Identities=17%  Similarity=0.297  Sum_probs=174.0

Q ss_pred             ceEEEEecCC--CeEEEEeCCCcEEEEecCC---CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956          311 DVLDLAWSNS--NYLLSCSMDKTVRMWQVGC---NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (667)
Q Consensus       311 ~V~~l~~s~~--~~l~s~s~Dg~I~iWd~~~---~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~  384 (667)
                      .+.++.|+.-  ++|++++..|.|.+||+..   .+.+..|. |...++++.|++...++|++|+.||+|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            4567788742  3999999999999999987   55556665 9999999999998999999999999999999998775


Q ss_pred             EE-ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          385 VD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       385 ~~-~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                      .. +......|..|.|+| .+..|+++...|.+.+||++.......+      ..+|.++|.++.|+|+ ..+|++|+.|
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k------~~AH~GpV~c~nwhPn-r~~lATGGRD  241 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK------LTAHNGPVLCLNWHPN-REWLATGGRD  241 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH------hhcccCceEEEeecCC-CceeeecCCC
Confidence            53 555677899999999 6789999999999999999976654332      4456799999999997 5899999999


Q ss_pred             CcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCE-EEEEe--CCCcEEEEEcCCCCccccc--cccCccceeEEccCC
Q 005956          463 SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKH-IISIG--DDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFSEG  536 (667)
Q Consensus       463 g~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~-l~sgs--~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~fs~dg  536 (667)
                      +.|+|||.... ...........++..+.|-|...+ ||+++  .|-.|+|||+..+..+...  .+..+.+.++|-...
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d  321 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD  321 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence            99999997632 111111225678999999998765 55554  4778999999988765432  333444444555433


Q ss_pred             cEEEEecCCC
Q 005956          537 VSVAVQWPGI  546 (667)
Q Consensus       537 ~~lav~w~~~  546 (667)
                      ..+..+-+.+
T Consensus       322 ~~~l~s~sKD  331 (839)
T KOG0269|consen  322 RINLWSCSKD  331 (839)
T ss_pred             ceeeEeecCc
Confidence            4444333333

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=1.2e-19  Score=188.09  Aligned_cols=152  Identities=16%  Similarity=0.223  Sum_probs=122.6

Q ss_pred             eEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956          394 ISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       394 v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                      |+.+.|.| |...|++++.||.|++|.+..+.+.............|..+|+++.|+|--...|++++.|.+|++||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            66777888 67789999999999999998776654433333334557789999999997677999999999999999987


Q ss_pred             ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc---cCccceeEEccCCcEEEEecCC
Q 005956          473 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK---NSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       473 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~---~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      .....+..+|...|..++|||+|+.+|+.+.||+|+||+....+.+.....   .....-+.|.+||.++.+.--.
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence            666666666999999999999999999999999999999988776554322   2334457899999988885433

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.83  E-value=1.9e-19  Score=189.00  Aligned_cols=244  Identities=18%  Similarity=0.257  Sum_probs=198.4

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +-.-.|.+++.||+|++||+|..-|+++||++.+.                                             
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l---------------------------------------------  491 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL---------------------------------------------  491 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhh---------------------------------------------
Confidence            45567999999999999999999999999999862                                             


Q ss_pred             CcceeeeccccceEEEEecCCC----eEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEEEEeeCCC--CEEEEEecC
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN----YLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDD--NYFISGSID  371 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~----~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~d~--~~l~sgs~D  371 (667)
                      .....+..|...|.||.|+...    +|++++.|.-|.|||+...- +++++ .|...|+++.|-- ++  ..+++++.|
T Consensus       492 ~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGAD  570 (1080)
T KOG1408|consen  492 EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGAD  570 (1080)
T ss_pred             hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCc
Confidence            3355677999999999998532    89999999999999997653 45555 4999999999988 44  678999999


Q ss_pred             CeEEEEecCC---CeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          372 GKVRIWGVCE---KRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       372 g~v~iwdl~~---~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      ..|.+--.+.   +.+..   ....+..++.++..|..+++++++.|.+|+||++.+++....   +.+ ...+.+....
T Consensus       571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~---FKg-s~~~eG~lIK  646 (1080)
T KOG1408|consen  571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS---FKG-SRDHEGDLIK  646 (1080)
T ss_pred             hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee---ecc-cccCCCceEE
Confidence            8775433221   22221   122356689999999999999999999999999998876543   222 2345577888


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      +...|.| .||++...|.++.++|.....+..+..+|...|+.+.|++|-++|++.+.||.|.||.+.-
T Consensus       647 v~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  647 VILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEECCCc-cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            9999996 8999999999999999876666666666999999999999999999999999999999865

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.1e-20  Score=199.15  Aligned_cols=227  Identities=19%  Similarity=0.314  Sum_probs=190.9

Q ss_pred             eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      +..|...|.++..-..+ .+++|+.|..+-+|.+....++..+ .|..+|.++.|++ ...+|+.|+.+|+|++||+...
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhh
Confidence            44688888888875555 8889999999999999877777664 6999999999999 8999999999999999999998


Q ss_pred             eEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          383 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       383 ~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      +.++ +.+|...+..+.|+|-|.+++.|+.|+.+.+||.+...+...       .+.|...+..+.|+|+| .+++.++.
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-------~~s~~~vv~~l~lsP~G-r~v~~g~e  174 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-------YKSHTRVVDVLRLSPDG-RWVASGGE  174 (825)
T ss_pred             hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee-------ecCCcceeEEEeecCCC-ceeeccCC
Confidence            8665 788999999999999999999999999999999996555432       23355778999999996 89999999


Q ss_pred             CCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcE
Q 005956          462 DSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVS  538 (667)
Q Consensus       462 dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~  538 (667)
                      |..++|||+..  ....|..  |.+.+.++.|+|..-++++||.|++|++||+++-+..... .....+.+..|+|+|..
T Consensus       175 d~tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~  252 (825)
T KOG0267|consen  175 DNTVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKI  252 (825)
T ss_pred             cceeeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCcee
Confidence            99999999864  4555555  8899999999999999999999999999999977654433 23455667899999988


Q ss_pred             EEEe
Q 005956          539 VAVQ  542 (667)
Q Consensus       539 lav~  542 (667)
                      ++..
T Consensus       253 ~~~G  256 (825)
T KOG0267|consen  253 VLSG  256 (825)
T ss_pred             eecC
Confidence            7763

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.82  E-value=8.9e-19  Score=184.30  Aligned_cols=279  Identities=19%  Similarity=0.291  Sum_probs=204.7

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc------------------eeeeeeCCCC-CccccCCCCeE
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA------------------ASCKSFTDDG-GFGSNAKEGKI  276 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~------------------~~~~~~~~~~-~~~~~~~~~~~  276 (667)
                      ..+.||++-|.++.|+|.+..|++++.|.++.||.-.+..                  --...+.+++ .+++....|..
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            4567999999999999999999999999999999876431                  0111223333 23334444555


Q ss_pred             EecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-eEeEEe----eCCC
Q 005956          277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF----DHHN  350 (667)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-~~~~~~----~h~~  350 (667)
                      .+|.......            ........||.+.|.+++|.|.| +|++.|.|.|-||+---.. ..-..+    .|..
T Consensus       341 hlWkt~d~~~------------w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy  408 (764)
T KOG1063|consen  341 HLWKTKDKTF------------WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY  408 (764)
T ss_pred             EEEeccCccc------------eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence            5554222111            12344567999999999999999 9999999999999865422 122222    3889


Q ss_pred             cEEEEEEeeCCCCEEEEEecCCeEEEEecCC-------------------------------------------Ce----
Q 005956          351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------------------------------------------KR----  383 (667)
Q Consensus       351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-------------------------------------------~~----  383 (667)
                      .++|++|-+ ....|++|.....+|+|+...                                           +.    
T Consensus       409 Dl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~  487 (764)
T KOG1063|consen  409 DLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV  487 (764)
T ss_pred             cceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence            999999998 577899998888899996521                                           00    


Q ss_pred             ------------------------------EEEecccCCceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcceee
Q 005956          384 ------------------------------VVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLE  428 (667)
Q Consensus       384 ------------------------------~~~~~~~~~~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~  428 (667)
                                                    +.++.+|...|.+++.+|+|+.+|+++...     .|++|+..+..... 
T Consensus       488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-  566 (764)
T KOG1063|consen  488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-  566 (764)
T ss_pred             eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-
Confidence                                          001223445699999999999999988653     68999987655433 


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEE---eCCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFK---GLPKSGSQMSASFTTTGKHIISIGDD  504 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~D  504 (667)
                      .+      ..|.-.|+.++|+||| ++|++.+.|.++.+|...+ ....+.   ...|..-|.+++|+|++++++|+|.|
T Consensus       567 ~L------~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD  639 (764)
T KOG1063|consen  567 EL------EGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD  639 (764)
T ss_pred             ee------cccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence            22      2335789999999996 8999999999999998542 111111   34588899999999999999999999


Q ss_pred             CcEEEEEcCCC
Q 005956          505 CRVYVWNYDEL  515 (667)
Q Consensus       505 g~I~iWd~~~~  515 (667)
                      .+|+||.....
T Consensus       640 K~VkVW~~~~~  650 (764)
T KOG1063|consen  640 KKVKVWEEPDL  650 (764)
T ss_pred             ceEEEEeccCc
Confidence            99999999877

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.82  E-value=5.1e-19  Score=184.52  Aligned_cols=250  Identities=18%  Similarity=0.273  Sum_probs=180.8

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      ..+|.++|..++|.|....|++++.|.++++||+.+....                                        
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~----------------------------------------  135 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV----------------------------------------  135 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceee----------------------------------------
Confidence            4589999999999996679999999999999999863221                                        


Q ss_pred             cCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe--------------------EeEEe--------e
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ--------------------CLNVF--------D  347 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~--------------------~~~~~--------~  347 (667)
                         -...+.||...|.+++|.+.+  .|++|+.||.|.|||+....                    ..+..        .
T Consensus       136 ---G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  136 ---GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             ---cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence               122477999999999999987  89999999999999976322                    00000        1


Q ss_pred             CCC----cEEEEEEeeCCCCEEEEEec-CCeEEEEecCCCeEEE---------eccc---CCceEEEEEeeCCCEEEEEe
Q 005956          348 HHN----YVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD---------WADV---RDVISAICYIPDGKGFIVGS  410 (667)
Q Consensus       348 h~~----~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~~~~~~---------~~~~---~~~v~~v~~spdg~~l~~gs  410 (667)
                      +..    .|+.+.| . |+..|++++. |+.|++||++......         +..+   ...+.+++....|.++.+.+
T Consensus       213 ~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            233    3445555 4 7889999888 9999999998754321         1112   23477888888899999999


Q ss_pred             cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEE
Q 005956          411 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSA  489 (667)
Q Consensus       411 ~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v  489 (667)
                      .|+.|++|++.+........ +.++..  ...-..-..+|++ .++++|+.|...++|.+..+.... ...+|...|+++
T Consensus       291 tD~sIy~ynm~s~s~sP~~~-~sg~~~--~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V  366 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAE-FSGKLN--SSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV  366 (720)
T ss_pred             cCCcEEEEeccccCcCchhh-ccCccc--ceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE
Confidence            99999999998766543311 111100  0111223457885 899999999999999987543221 223488899999


Q ss_pred             EEcCCC-CEEEEEeCCCcEEEEEcCCCC
Q 005956          490 SFTTTG-KHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       490 ~~spdg-~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      +|.|.. .-++++++|..++||++..+-
T Consensus       367 ~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  367 RWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             eeccccCCCceeeccCcceEEEeccCch
Confidence            996643 346677999999999997653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=1.3e-18  Score=166.10  Aligned_cols=205  Identities=17%  Similarity=0.272  Sum_probs=170.1

Q ss_pred             eccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe------------EeEEe----eCCCcEEEEEEeeCCCCEEEE
Q 005956          306 HGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ------------CLNVF----DHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~------------~~~~~----~h~~~V~~l~f~p~d~~~l~s  367 (667)
                      ..|.+.|++|...+..  ++++|+.||.|.+||++...            |+...    .|...|..+.|.|.|...|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            3688999999998754  99999999999999997532            21111    277799999999999999999


Q ss_pred             EecCCeEEEEecCCCeEEEecccCCceEEEEEeeC---CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spd---g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      ++.|.++++||..+-+....+...+.|.+-+++|-   .-++|+|+.+-.|++.|+..+.....       ...|...|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-------LsGHr~~vl  192 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-------LSGHRDGVL  192 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee-------eccccCceE
Confidence            99999999999999998888888899999999983   34788899999999999998876432       233468899


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcc---eeeE-----------E-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDV---IHKF-----------K-GLPKSGSQMSASFTTTGKHIISIGDDCRVYV  509 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~---~~~~-----------~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i  509 (667)
                      ++.|+|.....|++|+.||.|++||+++.   ...+           + ...|.+.+..++|+.+|.++++.+.|..+++
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            99999987778899999999999997643   1111           1 2347788999999999999999999999999


Q ss_pred             EEcCCCCc
Q 005956          510 WNYDELCF  517 (667)
Q Consensus       510 Wd~~~~~~  517 (667)
                      |+...+..
T Consensus       273 wn~~~G~n  280 (397)
T KOG4283|consen  273 WNMESGRN  280 (397)
T ss_pred             eecccCcc
Confidence            99988764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=8.1e-19  Score=169.20  Aligned_cols=202  Identities=25%  Similarity=0.357  Sum_probs=164.9

Q ss_pred             ceeeccccccEEEEEEcCCCC--EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~--~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...|-.|.+.|+++.|.++-.  .|++|++||.|.+|++..                                       
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------------------------------------  116 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------------------------------------  116 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------------------------------------
Confidence            456668999999999999876  999999999999999985                                       


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                            ...+..+++|.+.|+.++.+|.+ +-++.+.|+.+++||+-+|+.-.........+.+.|+| .|.+|+.++.+
T Consensus       117 ------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~  189 (362)
T KOG0294|consen  117 ------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN  189 (362)
T ss_pred             ------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc
Confidence                  35688999999999999999999 66689999999999999998777776666666699999 88888887765


Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE--c
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF--S  449 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~--s  449 (667)
                       .|-+|.+....+.........+.++.|. ++..+++|..++.|.+||..+......       ...|..+|.++.+  .
T Consensus       190 -~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~-------~~AH~~RVK~i~~~~~  260 (362)
T KOG0294|consen  190 -KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE-------FLAHENRVKDIASYTN  260 (362)
T ss_pred             -EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcccee-------eecchhheeeeEEEec
Confidence             5999999888776554444556666664 567999999999999999987433221       3345688999884  3


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCc
Q 005956          450 RDESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                      |+ +.+|++++.||.|+|||+..
T Consensus       261 ~~-~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  261 PE-HEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             CC-ceEEEEeccCceEEEEEccc
Confidence            34 48999999999999999763

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=2.2e-18  Score=173.64  Aligned_cols=207  Identities=18%  Similarity=0.277  Sum_probs=172.6

Q ss_pred             cceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCe----EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          301 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~----~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                      +.....-|...|++++|+|..   ++++|..-|.|-+||+.+.+    -+..+ .|..+|.++.|+|.+...+++.+.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            445666789999999999965   78899999999999995332    23333 49999999999999999999999999


Q ss_pred             eEEEEecCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          373 KVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       373 ~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      +|++-|+.+.....   .......+..+.|+.+...+++|..-|...+||+++.......+.++.      .+|++++++
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~------kKI~sv~~N  331 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK------KKITSVALN  331 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh------cccceeecC
Confidence            99999998875433   333455678888988888899999889999999999887666555554      589999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCccee----eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          450 RDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      |....++++++.|++.+|||++++..    .+....|...|.++.|||.+-.|+|.+.|..|+|||..
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            99889999999999999999885432    24456689999999999999889999999999999984

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=4.6e-19  Score=179.08  Aligned_cols=202  Identities=20%  Similarity=0.323  Sum_probs=167.1

Q ss_pred             cccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956          206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (667)
Q Consensus       206 ~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (667)
                      ..+++.-.+...+.+|-.+|+|+.|+.||.+|+|||.||.|.+|.+...-.      ++                  .  
T Consensus       107 lWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~------a~------------------~--  160 (476)
T KOG0646|consen  107 LWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS------AD------------------N--  160 (476)
T ss_pred             EEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc------cc------------------c--
Confidence            345556666677889999999999999999999999999999999874110      00                  0  


Q ss_pred             ceeecCCCcccccCCcceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCC
Q 005956          286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD  362 (667)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~  362 (667)
                                +...+|++.|.+|+-+|+++...+.+   +|+|+|.|.++++||+..+..+..+.....+.+++..| .+
T Consensus       161 ----------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae  229 (476)
T KOG0646|consen  161 ----------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AE  229 (476)
T ss_pred             ----------CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cc
Confidence                      00347899999999999999988754   99999999999999999999999999999999999999 89


Q ss_pred             CEEEEEecCCeEEEEecCCCe-----------------EEEecccCC--ceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956          363 NYFISGSIDGKVRIWGVCEKR-----------------VVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~-----------------~~~~~~~~~--~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~  423 (667)
                      ..++.|+.+|.|.+.++..-.                 ...+.+|.+  .|+|++++-||..|++|+.||.+++||+.+.
T Consensus       230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            999999999999998774321                 223556766  8999999999999999999999999999987


Q ss_pred             cceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          424 DLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      +.......       ..++|+.+++.|-
T Consensus       310 Q~iRtl~~-------~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  310 QCIRTLQT-------SKGPVTNLQINPL  330 (476)
T ss_pred             HHHHHHhh-------hccccceeEeecc
Confidence            76544221       1378999999664

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.6e-17  Score=174.78  Aligned_cols=285  Identities=17%  Similarity=0.281  Sum_probs=205.3

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ..+.....+....++||+|+.+|.+..++.|++||.+..++.......                                
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~--------------------------------  145 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT--------------------------------  145 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE--------------------------------
Confidence            334444556677899999999999999999999997777776643221                                


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-----e----CCCcEEEEEEee
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-----D----HHNYVTCVQFNP  359 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-----~----h~~~V~~l~f~p  359 (667)
                                 ....|.-.++.|.+++|+|++ .+++|+.||.|++||+.++..+...     +    ...-|+++.|..
T Consensus       146 -----------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr  214 (691)
T KOG2048|consen  146 -----------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR  214 (691)
T ss_pred             -----------EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee
Confidence                       122333457899999999999 7999999999999999998877732     1    233588899885


Q ss_pred             CCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956          360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (667)
Q Consensus       360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~  438 (667)
                        ...|++|...|+|.+||...+.+++ ...|...|.+++..++++.+++++.|+.+..|...++...   +........
T Consensus       215 --d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r~~  289 (691)
T KOG2048|consen  215 --DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRRDL  289 (691)
T ss_pred             --cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccccC
Confidence              6789999999999999999999876 5668889999999999999999999999999998877653   222333445


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~-~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      |...|.+++..++   .+++|+.|..+.+-................+-. -+...|.. +|+.-=.+..+.+|.+.+...
T Consensus       290 h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~-~L~~~w~~h~v~lwrlGS~~~  365 (691)
T KOG2048|consen  290 HAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPEN-RLLVLWKAHGVDLWRLGSVIL  365 (691)
T ss_pred             Ccccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccc-eEEEEeccccccceeccCccc
Confidence            6678999999876   899999999998876543111110000111111 12223333 333333355677787766511


Q ss_pred             ----------cccccccCccceeEEccCCcEEEEecCCC
Q 005956          518 ----------PSSKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       518 ----------~~~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                                .........+++.+.+|||+.+|++....
T Consensus       366 ~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~  404 (691)
T KOG2048|consen  366 QGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSR  404 (691)
T ss_pred             ccccChhhheeeecCCccceeeeccCCCCCEEEEeeccc
Confidence                      11234556788889999999999987544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=2e-18  Score=170.80  Aligned_cols=235  Identities=22%  Similarity=0.345  Sum_probs=182.5

Q ss_pred             eeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          217 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       217 ~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .+.||+++|..++|+| +...||+|++|.+|.||++-......                                     
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-------------------------------------  118 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-------------------------------------  118 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-------------------------------------
Confidence            3469999999999999 56699999999999999987522110                                     


Q ss_pred             cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                       -...++..|.||...|--++|+|..  .|++++.|.+|.|||+.+++.+..+.|.+-|+++.|+. +|.+|++.+.|.+
T Consensus       119 -~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKk  196 (472)
T KOG0303|consen  119 -DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKK  196 (472)
T ss_pred             -CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccce
Confidence             0236789999999999999999976  89999999999999999999999999999999999999 9999999999999


Q ss_pred             EEEEecCCCeEEEec-ccCC-ceEEEEEeeCCCEEEEEe---cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          374 VRIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       374 v~iwdl~~~~~~~~~-~~~~-~v~~v~~spdg~~l~~gs---~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      |||||.++++++... .|.+ ....+-|-.+|..+.+|.   .+..+-+||..+.........+..     .+.|.---|
T Consensus       197 vRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-----SnGvl~PFy  271 (472)
T KOG0303|consen  197 VRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-----SNGVLLPFY  271 (472)
T ss_pred             eEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-----CCceEEeee
Confidence            999999999988643 4433 345566778888655554   456888999877665543333333     245665667


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCC
Q 005956          449 SRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG  495 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg  495 (667)
                      .+|.+-..++|-.|+.|+.|.+.+   .++-+..+....+...+.|-|..
T Consensus       272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence            787655666777899999998763   24444444456677777777753

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=4.5e-18  Score=164.42  Aligned_cols=277  Identities=19%  Similarity=0.272  Sum_probs=190.8

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      ...+.|||||..|++-++|..+++|++-...-...            ..+.+.                     .+...+
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~------------~~~~~~---------------------~~~~~~   98 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK------------ADGPLN---------------------FSKHLS   98 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccC------------CCCccc---------------------ccccee
Confidence            34688999999999999999999999863111000            000000                     001111


Q ss_pred             ee-ccccceEEEEec-------CCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCC---cEEEEEEeeCCCCEEEEEe
Q 005956          305 LH-GHKGDVLDLAWS-------NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHN---YVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       305 l~-gh~~~V~~l~~s-------~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~---~V~~l~f~p~d~~~l~sgs  369 (667)
                      ++ .....|.+.+|-       |+. ++++.+.+.-|++||.-+|+....+.   |.+   ...+++|+| ||.+|++| 
T Consensus        99 ~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaG-  176 (406)
T KOG2919|consen   99 YRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAG-  176 (406)
T ss_pred             EEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeec-
Confidence            11 234567777875       455 89999999999999999999887774   544   456899999 99998876 


Q ss_pred             cCCeEEEEec-CCCeEE---E-----ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          370 IDGKVRIWGV-CEKRVV---D-----WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       370 ~Dg~v~iwdl-~~~~~~---~-----~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      ....|+++|+ +.|+-.   .     .....+.+.+++|+| +.+.+++|+....+-||.-........   +.    .|
T Consensus       177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l---lg----gh  249 (406)
T KOG2919|consen  177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL---LG----GH  249 (406)
T ss_pred             ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee---ec----cc
Confidence            5678999999 555422   1     223467799999999 556999999999998988765544322   12    34


Q ss_pred             CCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCcceee-EEeCCC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          440 GNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVIHK-FKGLPK---SGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~~~~~-~~~~~~---~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      .+.||.++|.++| +.|++|+ .|-.|..||++..... +....|   +..-.-....|+|++|++|+.||.|++||+++
T Consensus       250 ~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  250 GGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             CCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            6899999999997 5666665 4779999998853321 222222   23334456689999999999999999999998


Q ss_pred             -CCc-cccccccCccceeEEccCCcEEEEecC
Q 005956          515 -LCF-PSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       515 -~~~-~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                       +.. ............+.++|-=.++|+++.
T Consensus       329 ~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  329 LGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             CCCcccccccccccccceecCcccceeeeccC
Confidence             432 223334445555678886566666543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=3.1e-18  Score=166.02  Aligned_cols=282  Identities=18%  Similarity=0.276  Sum_probs=203.8

Q ss_pred             ceeeccccccEEEEEEcC-----CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          215 SQEIQAHKGCIWTLKFSP-----DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fsp-----dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      .+....|+.+|..++|++     +-+.+||+|.+ .+.||........                                
T Consensus        31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--------------------------------   77 (385)
T KOG1034|consen   31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--------------------------------   77 (385)
T ss_pred             eehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--------------------------------
Confidence            344568999999999985     34577887765 5888887642110                                


Q ss_pred             cCCCcccccCCcceeee--ccccceEEEEecC---C-C-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCC
Q 005956          290 IPDEVFQIEESPLQELH--GHKGDVLDLAWSN---S-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID  361 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~--gh~~~V~~l~~s~---~-~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d  361 (667)
                                ..++.+.  .|......++|+-   + + +|+.++.-|.|+|.|+.++++...+ +|...|..+.|+|..
T Consensus        78 ----------r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~  147 (385)
T KOG1034|consen   78 ----------RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR  147 (385)
T ss_pred             ----------eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC
Confidence                      0111111  3666677778863   2 3 8999999999999999999998887 499999999999988


Q ss_pred             CCEEEEEecCCeEEEEecCCCeEEE----ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee--e-e-----
Q 005956          362 DNYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--E-K-----  429 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~~~~----~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~--~-~-----  429 (667)
                      .+++++++.|..||+|++++..++.    ..+|++.|.++.|+++|.+|++++.|-.+.+|++...+...  + .     
T Consensus       148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP  227 (385)
T ss_pred             CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence            8999999999999999999999875    45689999999999999999999999999999998432211  1 0     


Q ss_pred             -----------Eeecc--ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce----------------eeEEeC
Q 005956          430 -----------VDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----------------HKFKGL  480 (667)
Q Consensus       430 -----------~~~~~--~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~----------------~~~~~~  480 (667)
                                 ..+..  ....|...|-|+.|-.   .++++-+.++.|..|...+..                ..+...
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~  304 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP  304 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence                       11111  1223556666777764   489999999999999753211                112221


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc---cc--ccCccceeEEccCCcEEEEe
Q 005956          481 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS---KQ--KNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       481 ~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~---~~--~~~~~~~~~fs~dg~~lav~  542 (667)
                      .........+|.|-++.||.|...|.|++||++..+.+..   .+  ....+...+|+-||.+|.+-
T Consensus       305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v  371 (385)
T KOG1034|consen  305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV  371 (385)
T ss_pred             ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE
Confidence            1112234456678889999999999999999988765321   11  22344456899999877764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=7.6e-19  Score=181.30  Aligned_cols=260  Identities=18%  Similarity=0.294  Sum_probs=191.5

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      ++..|.+.|+.++|.|....|++|+.||+|++|+++.....                                     -.
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------------~~  331 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------------AE  331 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------------------------cc
Confidence            77889999999999999999999999999999999531000                                     00


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-------e---EeE-EeeCCCcEEEEEEeeCCCCE
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-------Q---CLN-VFDHHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-------~---~~~-~~~h~~~V~~l~f~p~d~~~  364 (667)
                      ...+++.+|.+|.++|.|++..+++ .+++|+.||+|+.|++...       .   ... ..+|.+.|+.+++++ ....
T Consensus       332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~  410 (577)
T KOG0642|consen  332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDR  410 (577)
T ss_pred             cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccc
Confidence            1246899999999999999999999 9999999999999966421       1   111 236999999999999 7888


Q ss_pred             EEEEecCCeEEEEecCCCeEEEec--ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc---C
Q 005956          365 FISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT---S  439 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~---~  439 (667)
                      |++++.||++++|+........+.  ...+...++.+...  .++....+.....+++.+.........+......   .
T Consensus       411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~  488 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR  488 (577)
T ss_pred             eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc--hhHhhhhhcccccccchhhhhhhheeeccccCCCcccc
Confidence            999999999999998877763322  23344555555432  2222223344445554443333221111111111   1


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      ...|..+.++|.+ .+.+++..|+.|+++|............|...++++++.|+|.||++++.|+.|++|.+....+
T Consensus       489 ~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  489 YPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             cCccceEEecCCC-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            2557788889985 7999999999999999776555555555888999999999999999999999999999976544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=2.1e-17  Score=171.26  Aligned_cols=242  Identities=17%  Similarity=0.173  Sum_probs=178.7

Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                      .+...+...+.||++.|.+|...|.| .|++|+.||+|+||.+.++.|++++.....|.|++|+|....-++.+.....+
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence            34455667789999999999999999 99999999999999999999999999999999999999444444444444444


Q ss_pred             EEEecCCC-----------------------e---------------EEEecccCCceEEEEEeeCCCEEEEEecC---C
Q 005956          375 RIWGVCEK-----------------------R---------------VVDWADVRDVISAICYIPDGKGFIVGSIT---G  413 (667)
Q Consensus       375 ~iwdl~~~-----------------------~---------------~~~~~~~~~~v~~v~~spdg~~l~~gs~d---g  413 (667)
                      .|.+..-|                       +               +.....|...|..+.|+..|.+|++...+   .
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence            44432111                       0               11234456779999999999999997654   4


Q ss_pred             cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956          414 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       414 ~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp  493 (667)
                      .|.|+++.....+.   .+    ....+.|.++.|+|.- .++++++. ..|+|||+.+....-+.......|..++++|
T Consensus       547 ~VliHQLSK~~sQ~---PF----~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp  617 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQS---PF----RKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP  617 (733)
T ss_pred             eEEEEecccccccC---ch----hhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence            68888887654431   12    2224789999999985 45555543 5799999876544444444678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCccc--cccccCccceeEEccCCcEEEEecCCC
Q 005956          494 TGKHIISIGDDCRVYVWNYDELCFPS--SKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       494 dg~~l~sgs~Dg~I~iWd~~~~~~~~--~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .|..|+.|+.|+.+..+|++-...+.  ..++......++|++.--.+|.++.+.
T Consensus       618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg  672 (733)
T KOG0650|consen  618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG  672 (733)
T ss_pred             CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence            99999999999999999998765433  334455556668888767777665543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=3.8e-18  Score=171.49  Aligned_cols=206  Identities=21%  Similarity=0.273  Sum_probs=170.0

Q ss_pred             eccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          218 IQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      -++|+++|.+|.|+.+- ..||+||.|.+|++||+.+                                           
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-------------------------------------------  275 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-------------------------------------------  275 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-------------------------------------------
Confidence            34899999999998764 4899999999999999997                                           


Q ss_pred             ccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCC-CeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~-~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                        ++|..++..|.+.|.++.|+|..  .|++|++|++|.+.|.+. ...-..++..+.|-.++|+|.....++++..||+
T Consensus       276 --g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~  353 (463)
T KOG0270|consen  276 --GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT  353 (463)
T ss_pred             --CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce
Confidence              45677788899999999999977  999999999999999984 3334455678899999999988899999999999


Q ss_pred             EEEEecCCC-eEE-EecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          374 VRIWGVCEK-RVV-DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       374 v~iwdl~~~-~~~-~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      |+-+|++.. +++ ....|.+.|.++++++. ...+++++.++.+++|++...........     .-..+...|+++.|
T Consensus       354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-----~~~~~rl~c~~~~~  428 (463)
T KOG0270|consen  354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-----SFKLGRLHCFALDP  428 (463)
T ss_pred             EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-----cccccceeecccCC
Confidence            999999985 444 57789999999999985 45788899999999999986554332111     01124577888999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcc
Q 005956          451 DESQRIMITSEDSKLRILDGVDV  473 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~  473 (667)
                      +-..+++.|+..+.++|||+.+.
T Consensus       429 ~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  429 DVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             CcceEEEecCccceEEEeecccC
Confidence            87788999999999999997643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=8.4e-19  Score=194.55  Aligned_cols=249  Identities=16%  Similarity=0.237  Sum_probs=197.6

Q ss_pred             ccEEEEEEcCCCCE----EEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          223 GCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       223 ~~I~~v~fspdg~~----Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      ..-+.++|.+.|..    ||.|.+||.|.+||......                                       ...
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------------------------~~~  105 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------------------------NAS  105 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------------------------Ccc
Confidence            34667888887765    99999999999999875100                                       002


Q ss_pred             CCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                      ...+.++..|++.|..|.|++..  .|++|+.||.|.|||+.+-+.-..+   ...+.|.+++|+......|++++.+|+
T Consensus       106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~  185 (1049)
T KOG0307|consen  106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR  185 (1049)
T ss_pred             hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence            34466778899999999999865  8999999999999999875444333   256789999999877888999999999


Q ss_pred             EEEEecCCCeEE-EecccC--CceEEEEEeeCC-CEEEEEecCC---cEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          374 VRIWGVCEKRVV-DWADVR--DVISAICYIPDG-KGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       374 v~iwdl~~~~~~-~~~~~~--~~v~~v~~spdg-~~l~~gs~dg---~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      +.|||++..+.+ .+..+.  ..+..+.|+|+. ..+++++.|.   .|.+||++......+.+.      .|...|.++
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~------~H~~Gilsl  259 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE------GHQRGILSL  259 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc------ccccceeee
Confidence            999999987644 443333  458899999976 4666666553   789999987666554332      345789999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCC
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      .|++.+..++++++.|++|.+|+..+.............+..+.|.|... .+++++-||.|-||.+.+..
T Consensus       260 sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  260 SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99999889999999999999999988666666655778899999999887 77888999999999998765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.78  E-value=4.7e-18  Score=167.39  Aligned_cols=203  Identities=20%  Similarity=0.375  Sum_probs=159.2

Q ss_pred             cceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...++.+|.+.=++++|||-. ..|+||.--+.|++|...++..                                    
T Consensus       203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W------------------------------------  246 (440)
T KOG0302|consen  203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW------------------------------------  246 (440)
T ss_pred             ceEEecccCccceeeecccccccccccCccccceEeeeeccCce------------------------------------
Confidence            344677999999999999932 2588888888899999886422                                    


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCC---eEeEEeeCCCcEEEEEEeeCCCCEEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~---~~~~~~~h~~~V~~l~f~p~d~~~l~s  367 (667)
                         ...   ...|.+|+..|-+|+|||..  .|++||.||+|+|||++.+   .++.+-.|...|..|.|+. ...+|++
T Consensus       247 ---~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLas  319 (440)
T KOG0302|consen  247 ---KVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLAS  319 (440)
T ss_pred             ---eec---CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-Ccceeee
Confidence               112   23456799999999999965  9999999999999999988   5566656999999999998 6669999


Q ss_pred             EecCCeEEEEecCCCeE---E-EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcc---------------ee
Q 005956          368 GSIDGKVRIWGVCEKRV---V-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL---------------KL  427 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~---~-~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~---------------~~  427 (667)
                      |+.||+++|||++.-+.   + .+..|+.+|+++.|+| +...|++++.|..|.+||+....-               +.
T Consensus       320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPp  399 (440)
T KOG0302|consen  320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPP  399 (440)
T ss_pred             cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCc
Confidence            99999999999987443   3 5778999999999999 456788899999999999964321               11


Q ss_pred             eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          428 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       428 ~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                      +.+-.|.    ....+..+.|+++-+.+|++++.||
T Consensus       400 QLLFVHq----GQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  400 QLLFVHQ----GQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             eeEEEec----chhHhhhheeccCCCCeEEEecccc
Confidence            1111111    1256788999998777999999887

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.78  E-value=2.9e-16  Score=168.72  Aligned_cols=405  Identities=14%  Similarity=0.182  Sum_probs=274.9

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-ceeee--eeCCC-CC--------------ccccCCCCe
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-AASCK--SFTDD-GG--------------FGSNAKEGK  275 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~-~~~~~--~~~~~-~~--------------~~~~~~~~~  275 (667)
                      ....+..|.+.|.-+.  |-|.+|+++..++.+.||+..+. .....  .+... +.              ++.+...|.
T Consensus       106 i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~  183 (910)
T KOG1539|consen  106 IRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGR  183 (910)
T ss_pred             EEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCc
Confidence            3456667888888776  56889999999999999998873 11110  11110 01              111122222


Q ss_pred             EEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCC-CcEE
Q 005956          276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVT  353 (667)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~-~~V~  353 (667)
                      +.+|...               ..+.+++++++...|+++.-+|-= .++.|..+|+|.|++++.++.+..|+|. +.|+
T Consensus       184 lql~Nvr---------------t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vt  248 (910)
T KOG1539|consen  184 LQLWNVR---------------TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVT  248 (910)
T ss_pred             EEEEEec---------------cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccccee
Confidence            2222221               356789999999999999988866 8999999999999999999999999986 9999


Q ss_pred             EEEEeeCCCC-EEEEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee---
Q 005956          354 CVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL---  427 (667)
Q Consensus       354 ~l~f~p~d~~-~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~---  427 (667)
                      .++|.. ||+ .+++|+..|.+.+||++..+.+.  ...|.+.|+...|-|....+++++.|..+++|-..++.-..   
T Consensus       249 slSFrt-DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L  327 (910)
T KOG1539|consen  249 SLSFRT-DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL  327 (910)
T ss_pred             EEEecc-CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe
Confidence            999998 555 56667777999999999988764  23466778888888877777777777776665332110000   


Q ss_pred             --------------------------------------------------------------------------------
Q 005956          428 --------------------------------------------------------------------------------  427 (667)
Q Consensus       428 --------------------------------------------------------------------------------  427 (667)
                                                                                                      
T Consensus       328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R  407 (910)
T KOG1539|consen  328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR  407 (910)
T ss_pred             eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence                                                                                            


Q ss_pred             -----------------eeEeeccc-----------cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe
Q 005956          428 -----------------EKVDFHDR-----------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG  479 (667)
Q Consensus       428 -----------------~~~~~~~~-----------~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~  479 (667)
                                       ..+.+...           .+.....+++++.++-| ++.+.|...|.|-+|++...+++-..
T Consensus       408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf  486 (910)
T KOG1539|consen  408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSF  486 (910)
T ss_pred             hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeeccc
Confidence                             00000000           00112456778888875 88999999999999999876665443


Q ss_pred             ---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCCcccccccCC
Q 005956          480 ---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS  556 (667)
Q Consensus       480 ---~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~  556 (667)
                         ..|...|+.++...-++.+++++.+|.+++||+++..............++.++.....+|++-..-.-.+....  
T Consensus       487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~--  564 (910)
T KOG1539|consen  487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV--  564 (910)
T ss_pred             ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch--
Confidence               458999999999999999999999999999999988755555556666677777777777776544322211100  


Q ss_pred             CCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCc
Q 005956          557 SLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV  635 (667)
Q Consensus       557 ~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (667)
                          +-.+-.+...+....+...|||+++.++..+-.++ -+|..-....-+.             -++...|.+     
T Consensus       565 ----t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~-------------~~vd~~~~s-----  622 (910)
T KOG1539|consen  565 ----TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG-------------LLVDSPCTS-----  622 (910)
T ss_pred             ----hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee-------------EecCCccee-----
Confidence                00011222344456778899999999998777666 5665432111100             001122333     


Q ss_pred             ccCCCCCceEEEecCCC-CeEeeeeecC
Q 005956          636 RAISATWGLVIVTAGCD-GMIKTFHNYG  662 (667)
Q Consensus       636 ~~~~~~~g~vivta~~~-G~ir~f~~~~  662 (667)
                       ..-+|-|.+++|+..| --|.+|-|.-
T Consensus       623 -ls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  623 -LSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             -eEECCCCCEEEEEEecCceEEEEEchh
Confidence             6678999999999999 5689998854

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.78  E-value=2.1e-17  Score=173.80  Aligned_cols=313  Identities=14%  Similarity=0.211  Sum_probs=213.3

Q ss_pred             eccccccEEEEEEcCC-----------CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCc
Q 005956          218 IQAHKGCIWTLKFSPD-----------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  286 (667)
Q Consensus       218 l~~H~~~I~~v~fspd-----------g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (667)
                      +--|...||.+.--|.           ...+.|++.|++||+|++....-..++- .+   .....--++.+.+..   .
T Consensus       365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyr-RN---ils~~l~ki~y~d~~---~  437 (1080)
T KOG1408|consen  365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYR-RN---ILSANLSKIPYEDST---Q  437 (1080)
T ss_pred             eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceee-cc---cchhhhhcCccccCc---h
Confidence            3459999999887661           1268999999999999998511000000 00   000000000000000   0


Q ss_pred             eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC--CC
Q 005956          287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD  362 (667)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~--d~  362 (667)
                      .++ .+....+-.+......+....|.+++.+|++ +|++|..-|+++||++..-+....+. |...|.|+.|+..  ..
T Consensus       438 q~~-~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~  516 (1080)
T KOG1408|consen  438 QIM-HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN  516 (1080)
T ss_pred             hhh-hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence            000 0000000112233334556679999999999 99999999999999998877766664 9999999999852  35


Q ss_pred             CEEEEEecCCeEEEEecCCCeE--EEecccCCceEEEEEeeCC--CEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956          363 NYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~spdg--~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~  438 (667)
                      ++|++++.|..|++||+...-.  ..+.+|...|+++.|--.|  ..+++++.|..|.+--..... ....+ ...+...
T Consensus       517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f-~r~t~t~  594 (1080)
T KOG1408|consen  517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLF-PRHTQTL  594 (1080)
T ss_pred             HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc-Cceec-ccccccc
Confidence            6899999999999999876532  2467789999999999887  678888888776543332111 01111 1111122


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ....+..++..|. .+++++++.|..|+|||+.  +..+.|++. .|.+....+...|.|-|||+...|.++.++|+-++
T Consensus       595 ~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  595 SKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             ccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence            2367899999998 5899999999999999987  455667663 45688899999999999999999999999999999


Q ss_pred             Ccccc-ccccCccceeEEccCCcEEEE
Q 005956          516 CFPSS-KQKNSVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       516 ~~~~~-~~~~~~~~~~~fs~dg~~lav  541 (667)
                      ++... ..+...++-+.|.+|-+.|..
T Consensus       674 EcvA~m~GHsE~VTG~kF~nDCkHlIS  700 (1080)
T KOG1408|consen  674 ECVAQMTGHSEAVTGVKFLNDCKHLIS  700 (1080)
T ss_pred             hhhhhhcCcchheeeeeecccchhhee
Confidence            98655 344455666788888775544

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=9.4e-18  Score=162.69  Aligned_cols=245  Identities=21%  Similarity=0.361  Sum_probs=183.1

Q ss_pred             cccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          220 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       220 ~H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .|...-..++|+-|    ..+||.||.-|.|+|.|+.+                                          
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~------------------------------------------  124 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS------------------------------------------  124 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch------------------------------------------
Confidence            47777888888754    34999999999999999986                                          


Q ss_pred             cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEeeCCCCEEEEEe
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                         .+....+.+|...|+.|.++|+.  +++++|.|.+||+|++++..|+..|+    |.+.|.++.|++ ++.+|++++
T Consensus       125 ---~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScG  200 (385)
T KOG1034|consen  125 ---GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCG  200 (385)
T ss_pred             ---hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccC
Confidence               34466788999999999999988  99999999999999999999999995    999999999999 999999999


Q ss_pred             cCCeEEEEecCCCeEEE-----------------------------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEe
Q 005956          370 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~-----------------------------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~  420 (667)
                      .|.++++|++...+...                             ...|...|-|+.|-  |+++++=+-++.|..|..
T Consensus       201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP  278 (385)
T ss_pred             CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence            99999999998432110                             01133334444443  567888888889999987


Q ss_pred             cCCcce------ee-eEeeccccCcCCCCeEEEE--EccCCCeEEEEEeCCCcEEEEECCcce----eeEEeCCCCCCeE
Q 005956          421 SGNDLK------LE-KVDFHDRKKTSGNKITGIQ--FSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQM  487 (667)
Q Consensus       421 ~~~~~~------~~-~~~~~~~~~~~~~~I~~l~--~sp~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~  487 (667)
                      ......      .+ .....++..-....|.-+.  |.|-+ ..|+.|...|.|++||+....    .++.-......|.
T Consensus       279 gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR  357 (385)
T KOG1034|consen  279 GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR  357 (385)
T ss_pred             chhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence            311111      00 1111111222234455444  45553 689999999999999987322    2233333567889


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          488 SASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       488 ~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ..+|+.||.+|+...+|+.|.-||.-
T Consensus       358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  358 QTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999999999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=1.5e-17  Score=173.53  Aligned_cols=267  Identities=21%  Similarity=0.312  Sum_probs=199.5

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      .|..++|-|||..|+.+..+ .+.|||+..                                             +..++
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd---------------------------------------------G~llq   47 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD---------------------------------------------GTLLQ   47 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCC---------------------------------------------ccccc
Confidence            89999999999988877655 588999985                                             45688


Q ss_pred             eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      ++++|.+.|.+++|+.+| ++++|+.|+.|.+|.-. .+-+..+.|.+.|.|+.|+| -...+++++.. ..-+|.....
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK  124 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK  124 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh
Confidence            999999999999999999 99999999999999864 33445677999999999999 77888888764 4778987766


Q ss_pred             eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC----eEEEE
Q 005956          383 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES----QRIMI  458 (667)
Q Consensus       383 ~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~----~~l~~  458 (667)
                      .+.+. .....+.+.+|..||++++.|-.+|+|.+-+.......  .+.   +....+.+|.+++|+|..+    ..+++
T Consensus       125 ~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~--~I~---Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  125 SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV--KIE---RPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce--EEe---CCCCCCCCceEEEecCCCCCCccceEEE
Confidence            55432 23456888999999999999999999999865433221  111   2334568999999999732    35666


Q ss_pred             EeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCc
Q 005956          459 TSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV  537 (667)
Q Consensus       459 ~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~  537 (667)
                      .....++.++.+. +.+.+-+.  -.-...++.+-++|.|+..|+.|+.+.+|-.+.-..-....-.+-+-.+...|+++
T Consensus       199 ~DW~qTLSFy~LsG~~Igk~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ  276 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLSGKQIGKDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ  276 (1081)
T ss_pred             EeccceeEEEEecceeeccccc--CCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCc
Confidence            6666666666643 22221111  23345688889999999999999999999887755433333333333458899999


Q ss_pred             EEEEecCCCC
Q 005956          538 SVAVQWPGIG  547 (667)
Q Consensus       538 ~lav~w~~~~  547 (667)
                      +++++.-+..
T Consensus       277 ~v~~GCqDGT  286 (1081)
T KOG1538|consen  277 YVVVGCQDGT  286 (1081)
T ss_pred             eEEEEEccCe
Confidence            9999765543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.77  E-value=1.9e-17  Score=167.94  Aligned_cols=215  Identities=17%  Similarity=0.242  Sum_probs=167.7

Q ss_pred             EEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc
Q 005956          313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV  390 (667)
Q Consensus       313 ~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~  390 (667)
                      .|++..... ++++|+..++|+|||+....+.+.++ |...|+++.++- .+.||++++..|.|.|..+.++.......+
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec
Confidence            333333334 89999999999999999776776665 999999999998 888999999999999999998876654333


Q ss_pred             --CCceEEEEEeeCCCE-EEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956          391 --RDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  467 (667)
Q Consensus       391 --~~~v~~v~~spdg~~-l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i  467 (667)
                        ...|.-+.|+|..+. |.+++.+|.+.+||+.+......      ....|..+...|+|+|.+..+|++.+.|..|.+
T Consensus       162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~------~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~  235 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH------ASEAHSAPCRGICFSPSNEALLVSVGYDKKINI  235 (673)
T ss_pred             CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc------hhhhccCCcCcceecCCccceEEEecccceEEE
Confidence              345668999997765 55688999999999987655322      234456889999999998889999999999999


Q ss_pred             EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cccCccceeEEccC
Q 005956          468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFSE  535 (667)
Q Consensus       468 wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~fs~d  535 (667)
                      ||.......-.. ....+...++|+++|.+|+.|...|.|+.||+...+.+...  .....+.+++|-+-
T Consensus       236 yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  236 YDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             eeccccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            998733222111 24678899999999999999999999999999887665442  23344667777664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=8.6e-17  Score=155.09  Aligned_cols=226  Identities=12%  Similarity=0.133  Sum_probs=172.4

Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  389 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~  389 (667)
                      ..++.|++.| +|+.|+.||.|.|||+.+...-+.+. |..+|++++|++ +|+.|++++.|..|.+||+..+.+.+...
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            7899999999 99999999999999999998888775 999999999999 99999999999999999999999998888


Q ss_pred             cCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          390 VRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       390 ~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                      ...+|..+.|+|..+ .+++.-.+..-.+.++........  .... ....+..-.+..|.+.| +++++|...|.+.++
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L--p~d~-d~dln~sas~~~fdr~g-~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL--PKDD-DGDLNSSASHGVFDRRG-KYIITGTSKGKLLVY  180 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec--cCCC-ccccccccccccccCCC-CEEEEecCcceEEEE
Confidence            899999999999543 333333444455566554222211  1110 00111122233577875 899999999999999


Q ss_pred             ECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc------cc------ccccCccceeEEcc
Q 005956          469 DGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP------SS------KQKNSVRSCEHFFS  534 (667)
Q Consensus       469 d~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~------~~------~~~~~~~~~~~fs~  534 (667)
                      |..+  ++..++.. ....|..+.|+..|++|+.-+.|..|+.|++..-...      ..      .-.+..+.++.|+.
T Consensus       181 ~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  181 DAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             ecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence            9774  45555552 2377889999999999999999999999998742111      11      12455677889999


Q ss_pred             CCcEEEEec
Q 005956          535 EGVSVAVQW  543 (667)
Q Consensus       535 dg~~lav~w  543 (667)
                      ||.+++.+.
T Consensus       260 dgeYv~a~s  268 (405)
T KOG1273|consen  260 DGEYVCAGS  268 (405)
T ss_pred             CccEEEecc
Confidence            999999876

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.76  E-value=4e-17  Score=162.48  Aligned_cols=267  Identities=21%  Similarity=0.369  Sum_probs=185.6

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ....|..|..+|+++.|+|+|.+||+|+++|.|.+|........     .... .                       ..
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~~d~-e-----------------------~~  107 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----DADT-E-----------------------AD  107 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----cccc-h-----------------------hh
Confidence            34567899999999999999999999999999999987641110     0000 0                       00


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                      ...........+.+|...|..++|+|++ ++++++.|.++++||+..|+.+..+. |..+|..++|.| -++++++-+.|
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~d  186 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSD  186 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccC
Confidence            0000122356678899999999999999 99999999999999999999998885 999999999999 88999999999


Q ss_pred             CeEEEEecCCCeEEEecc--------------------c----CCceEEEEEeeCCCEEEEEec----CCc-----EEEE
Q 005956          372 GKVRIWGVCEKRVVDWAD--------------------V----RDVISAICYIPDGKGFIVGSI----TGT-----CHFY  418 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~--------------------~----~~~v~~v~~spdg~~l~~gs~----dg~-----i~l~  418 (667)
                      ...+.+++...+++....                    |    ..-...++|+|||..+++...    .|.     .++|
T Consensus       187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvf  266 (434)
T KOG1009|consen  187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVF  266 (434)
T ss_pred             cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEee
Confidence            888887776544332111                    0    112456789999999888532    222     2444


Q ss_pred             EecCCcceeeeEeeccccCcCCCCeEEEEEccC-------C---------CeEEEEEeCCCcEEEEECCcce--eeEEeC
Q 005956          419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD-------E---------SQRIMITSEDSKLRILDGVDVI--HKFKGL  480 (667)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~-------g---------~~~l~~~s~dg~I~iwd~~~~~--~~~~~~  480 (667)
                      +-...+.+  ...+...    ..+...+.|+|-       .         ...+++....+.|+|||.....  ..... 
T Consensus       267 srk~l~rP--~~~lp~~----~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n-  339 (434)
T KOG1009|consen  267 SRKDLKRP--AARLPSP----KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN-  339 (434)
T ss_pred             ccccccCc--eeecCCC----CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEee-
Confidence            43322222  1222221    233444444431       0         1234445556789999988633  33332 


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          481 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       481 ~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      -|-..++.++|++||.+|+..|.||..-+-.++..+.
T Consensus       340 ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  340 IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            2788999999999999999999999888877776654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.2e-16  Score=173.50  Aligned_cols=232  Identities=19%  Similarity=0.257  Sum_probs=182.5

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      |...|.+++-.  +.+|++|+.+++|.+|...++..                                            
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~--------------------------------------------   88 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE--------------------------------------------   88 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCc--------------------------------------------
Confidence            77778888755  45999999999999999886322                                            


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                       -..+...+-++.+++|+.+| +++.||.|-.|++-++........+ +|..+|.++.|+| .+++|++.+.||+|++||
T Consensus        89 -~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   89 -DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             -cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEE
Confidence             22233456789999999999 9999999999999999888777666 5999999999999 999999999999999999


Q ss_pred             cCCCeEEEecc---------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          379 VCEKRVVDWAD---------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       379 l~~~~~~~~~~---------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      +.++.+.....         ....+..++|+|+|..+++.+.|+.|.+|+..+......   +..  +.+...++.++|+
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~---Lr~--~~~ss~~~~~~ws  241 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK---LRD--KLSSSKFSDLQWS  241 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee---ecc--cccccceEEEEEc
Confidence            99887553211         134577899999999999999999999999988766543   211  1223449999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                      |.| .||++++.+|.|.|||..+...    +.....|.+++|.|+..-|-.-...|...+|
T Consensus       242 PnG-~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  242 PNG-KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             CCC-cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            996 9999999999999999876222    3356789999999988766544444444444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.2e-17  Score=169.45  Aligned_cols=296  Identities=20%  Similarity=0.301  Sum_probs=219.7

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      +.+...|..|.|.|+.|.|+..|..|++|+.|..|.+||+....                                    
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------------------------------------  175 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------------------------------------  175 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC------------------------------------
Confidence            34455678999999999999999999999999999999998632                                    


Q ss_pred             CCcccccCCcceee-eccccceEEEEecCCC---eEEEEeCCCcEEEEecC-CCeEe---EEeeCCCcEEEEEEeeCCCC
Q 005956          292 DEVFQIEESPLQEL-HGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVG-CNQCL---NVFDHHNYVTCVQFNPIDDN  363 (667)
Q Consensus       292 ~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~-~~~~~---~~~~h~~~V~~l~f~p~d~~  363 (667)
                               +...+ .||...|....|-|..   .+++++.||.|++=.+. ++.+.   +...|.++|..++.-|.+..
T Consensus       176 ---------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~  246 (559)
T KOG1334|consen  176 ---------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK  246 (559)
T ss_pred             ---------cccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC
Confidence                     22233 4788888888888743   89999999999998764 33333   23359999999999998889


Q ss_pred             EEEEEecCCeEEEEecCCCeEEE----ecccCC---ceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcce-----eeeE
Q 005956          364 YFISGSIDGKVRIWGVCEKRVVD----WADVRD---VISAICYIPDG-KGFIVGSITGTCHFYKASGNDLK-----LEKV  430 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl~~~~~~~----~~~~~~---~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~-----~~~~  430 (667)
                      .|++++.|+.+.-+|++.+....    ......   ...+++..|.. ..+++|+.|-.+++||.+.-...     ...+
T Consensus       247 ~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f  326 (559)
T KOG1334|consen  247 PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKF  326 (559)
T ss_pred             cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhc
Confidence            99999999999999998765322    122222   57788899954 58999999999999998754433     1111


Q ss_pred             eeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--------------cce-eeEEeCCCCCCeEEEEE-cCC
Q 005956          431 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--------------DVI-HKFKGLPKSGSQMSASF-TTT  494 (667)
Q Consensus       431 ~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--------------~~~-~~~~~~~~~~~v~~v~~-spd  494 (667)
                      ..+.........|++++|+.++ .-|+++-.|-.|+++.-.              ... +.|+++.+...|..+-| .|.
T Consensus       327 ~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr  405 (559)
T KOG1334|consen  327 CPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR  405 (559)
T ss_pred             CCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc
Confidence            1111111334679999999886 567777778889999521              122 34889888888888876 888


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcC
Q 005956          495 GKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  567 (667)
Q Consensus       495 g~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~  567 (667)
                      ..|+++||+=|.|.||+-.+++..... ....++.|+-=+|              -+.+|++++.+...++|..
T Consensus       406 sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP--------------~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP--------------HLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             cceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC--------------CCchhhccCCccceeeecC
Confidence            999999999999999999998875443 3344677765555              3445666666777777765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=7.5e-17  Score=159.79  Aligned_cols=206  Identities=20%  Similarity=0.295  Sum_probs=163.2

Q ss_pred             ceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe-------Ee-EEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956          302 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-------CL-NVFDHHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~-------~~-~~~~h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                      .-.+.||+++|.+++|+|-+  .+++||.|.+|+||++..+.       ++ ...+|...|--++|+|.-.+.|++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            44567999999999999855  99999999999999986543       22 2336999999999999889999999999


Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      .+|.+|++.+++.+....|.+.|.+++|+.||.+|++.+.|..|+|||.+++....+.....      +.+-..+.|-.+
T Consensus       154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he------G~k~~Raifl~~  227 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE------GAKPARAIFLAS  227 (472)
T ss_pred             ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc------CCCcceeEEecc
Confidence            99999999999977666699999999999999999999999999999999988766532222      244566778777


Q ss_pred             CCeEEEEEe----CCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCC
Q 005956          452 ESQRIMITS----EDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC  516 (667)
Q Consensus       452 g~~~l~~~s----~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~  516 (667)
                      | . +++++    .+.++-+||..+   ....... .....|.---|.+|.+.|+.+| .|+.|+.|.+.+..
T Consensus       228 g-~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  228 G-K-IFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             C-c-eeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            6 4 66654    467899999654   3222222 2455566666789988887655 68999999998754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=1.5e-18  Score=185.35  Aligned_cols=266  Identities=24%  Similarity=0.390  Sum_probs=201.8

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      +...+.|.+|..+|.|+.|...|.|++||+.|..|+||...+                                      
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--------------------------------------  221 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--------------------------------------  221 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccc--------------------------------------
Confidence            344556789999999999999999999999999999999775                                      


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEe
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                             ...+....||.+.|++++.+.++ ++++++.|..|++|.+.++.++.++ +|++.|++++|+|     +.+.+
T Consensus       222 -------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-----~~sss  289 (1113)
T KOG0644|consen  222 -------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-----RASSS  289 (1113)
T ss_pred             -------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-----cccCC
Confidence                   34577888999999999999888 9999999999999999999998877 5999999999999     23778


Q ss_pred             cCCeEEEEecCCCeEEE-----ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          370 IDGKVRIWGVCEKRVVD-----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~-----~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      .||++++||.+-.....     .....+.+.++-|-..+..+++|+.++.-..|.+.......             ..+.
T Consensus       290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-------------~~li  356 (1113)
T KOG0644|consen  290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-------------NLLI  356 (1113)
T ss_pred             CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc-------------cceE
Confidence            99999999988222211     12234557777888888999999999988888765332211             1112


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCccccc
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l-~sgs~Dg~I~iWd~~~~~~~~~~  521 (667)
                      -+.++.+-..+.+++-.+-.+.+|++...  .+...+  |...+..+.++|-+..+ .+++.||.+.|||+-.+......
T Consensus       357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             EEeccccccccceeeeeeeEeeeeecccchhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence            22222232346677777888999998765  455555  77788889999977665 47899999999999877543322


Q ss_pred             c-ccCccceeEEccCCcEEEEe
Q 005956          522 Q-KNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       522 ~-~~~~~~~~~fs~dg~~lav~  542 (667)
                      . ......-..|++||..++++
T Consensus       435 ~~gh~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  435 FIGHGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             ecccceeeccccCCCCceEecC
Confidence            1 12222234899999998885

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5.7e-18  Score=188.03  Aligned_cols=227  Identities=16%  Similarity=0.265  Sum_probs=170.6

Q ss_pred             ccceEEEEecCCC-----eEEEEeCCCcEEEEecCC---CeE---eEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          309 KGDVLDLAWSNSN-----YLLSCSMDKTVRMWQVGC---NQC---LNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       309 ~~~V~~l~~s~~~-----~l~s~s~Dg~I~iWd~~~---~~~---~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      ....+.|+|.+.+     .|+.|..||.|.+||...   +..   +..+ .|++.|..+.|++..+++|++|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            3457888997644     588999999999999865   222   2233 399999999999977789999999999999


Q ss_pred             EecCCCeEE-E--ecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          377 WGVCEKRVV-D--WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       377 wdl~~~~~~-~--~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      ||+..-+.- .  .....+.|.+++|+.. .+.|++++.+|.+.|||++.++.....-...+     ...+..++|+|++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-----~~~~S~l~WhP~~  218 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-----RMHCSVLAWHPDH  218 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC-----ccceeeeeeCCCC
Confidence            999874322 1  2235677999999884 45677889999999999998755443211111     1558899999999


Q ss_pred             CeEEEEEeCCC---cEEEEECC---cceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCccccccccC
Q 005956          453 SQRIMITSEDS---KLRILDGV---DVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQKNS  525 (667)
Q Consensus       453 ~~~l~~~s~dg---~I~iwd~~---~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~  525 (667)
                      ...|++++.|.   .|.+||++   ...+.+++  |...|.++.|++.+ .+|++++.|+.|.+|+.++++.........
T Consensus       219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~  296 (1049)
T KOG0307|consen  219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG  296 (1049)
T ss_pred             ceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence            88888887765   79999987   35555655  89999999998877 899999999999999999988765544433


Q ss_pred             cc-ceeEEccCCc-EEEEe
Q 005956          526 VR-SCEHFFSEGV-SVAVQ  542 (667)
Q Consensus       526 ~~-~~~~fs~dg~-~lav~  542 (667)
                      .+ .-+.|+|..- .+|++
T Consensus       297 nW~fdv~w~pr~P~~~A~a  315 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAAA  315 (1049)
T ss_pred             cceeeeeecCCCcchhhhh
Confidence            32 3357777654 44443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=4e-16  Score=149.03  Aligned_cols=233  Identities=17%  Similarity=0.311  Sum_probs=170.8

Q ss_pred             eccccceEEEEecCCC------eEEEEeCCCcEEEEecCC--CeE--eEEe------eCCCcEEEEEEeeCCCCEEEEEe
Q 005956          306 HGHKGDVLDLAWSNSN------YLLSCSMDKTVRMWQVGC--NQC--LNVF------DHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~------~l~s~s~Dg~I~iWd~~~--~~~--~~~~------~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                      ..|.-+++.+.|.|+.      +|+|++  ..+|+|.+..  .+.  ...+      .+..++++..|+..+.++|.+.+
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            3688899999999865      344444  3799999873  221  1111      26679999999999999999999


Q ss_pred             cCCeEEEEecCCCeE----EEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          370 IDGKVRIWGVCEKRV----VDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~----~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      .|.+..|||+.++..    .++..|...|..++|...+ +.||+.+.||.+++||++.........  ..  .....+..
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY--E~--p~~~~pLl  246 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY--ED--PSPSTPLL  246 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe--cC--CCCCCcce
Confidence            999999999999743    3578899999999999865 578889999999999999765433222  11  11246788


Q ss_pred             EEEEccCCCeEEEEEeCCC-cEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCccc
Q 005956          445 GIQFSRDESQRIMITSEDS-KLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg-~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      .++|++.+.+++++-..|+ .|.|.|++.   .+..+++  |.+.|+.++|.|.. .+|.++|+|..+.|||+...-...
T Consensus       247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~  324 (364)
T KOG0290|consen  247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN  324 (364)
T ss_pred             eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence            9999999888888876664 799999873   3444444  89999999999864 689999999999999998653311


Q ss_pred             ------cccccCccceeEEc-cCCcEEEEecCCC
Q 005956          520 ------SKQKNSVRSCEHFF-SEGVSVAVQWPGI  546 (667)
Q Consensus       520 ------~~~~~~~~~~~~fs-~dg~~lav~w~~~  546 (667)
                            .......+..+.|+ ..+..+|+.++..
T Consensus       325 ~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  325 GEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             CCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence                  11233334445555 3455566655443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=8.2e-17  Score=157.09  Aligned_cols=258  Identities=19%  Similarity=0.272  Sum_probs=181.1

Q ss_pred             cccceeeccccccEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          212 LYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fsp--dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ....+++++|.+.++.|+|..  .+..+.+|+.||+|++||+....                                  
T Consensus        60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~----------------------------------  105 (376)
T KOG1188|consen   60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA----------------------------------  105 (376)
T ss_pred             hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch----------------------------------
Confidence            445678899999999999987  45689999999999999998632                                  


Q ss_pred             cCCCcccccCCcceeeeccc-cceEEEEecCCC-eEEEEe----CCCcEEEEecCCCeE-eEEee--CCCcEEEEEEeeC
Q 005956          290 IPDEVFQIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCS----MDKTVRMWQVGCNQC-LNVFD--HHNYVTCVQFNPI  360 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~-~~V~~l~~s~~~-~l~s~s----~Dg~I~iWd~~~~~~-~~~~~--h~~~V~~l~f~p~  360 (667)
                               +.....+.+|. .+..+++-...+ .++.|.    .|-.|.+||++..+. +..+.  |.+.|+++.|+|.
T Consensus       106 ---------e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~  176 (376)
T KOG1188|consen  106 ---------ESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS  176 (376)
T ss_pred             ---------hhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence                     22334444554 456666665444 555553    356799999988765 66663  9999999999999


Q ss_pred             CCCEEEEEecCCeEEEEecCCCe----EEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeee-Ee---
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEK-VD---  431 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~----~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~-~~---  431 (667)
                      +.++|++||.||.|.+||+....    +.....+...|.++.|..++ +.|.+-+..++..+|+++.+...... ..   
T Consensus       177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~  256 (376)
T KOG1188|consen  177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS  256 (376)
T ss_pred             CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch
Confidence            99999999999999999997643    44566778889999999877 56888999999999999877643321 00   


Q ss_pred             ecc-ccCcCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECC--------cceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          432 FHD-RKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGV--------DVIHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       432 ~~~-~~~~~~~~I~~l~~sp~g~~~l~~~s~-dg~I~iwd~~--------~~~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      ... .+......+.... +|.+....++++. -+...++-+.        +....+.+. |...|.++.|...+.+++||
T Consensus       257 ~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~TG  334 (376)
T KOG1188|consen  257 ADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLYTG  334 (376)
T ss_pred             hhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceeecc
Confidence            000 0000111222222 2433344444443 5666655322        223333332 66778899998899999999


Q ss_pred             eCCCcEEEEEcCC
Q 005956          502 GDDCRVYVWNYDE  514 (667)
Q Consensus       502 s~Dg~I~iWd~~~  514 (667)
                      |+||.+.+|..++
T Consensus       335 GEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  335 GEDGLLQAWKVED  347 (376)
T ss_pred             CCCceEEEEecCC
Confidence            9999999999744

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=1.3e-16  Score=166.71  Aligned_cols=246  Identities=17%  Similarity=0.281  Sum_probs=190.8

Q ss_pred             cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      +...-.+.|+|++|++.|+|++|+.||+.+|+|+.|..|.||.-.-                                  
T Consensus        39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl----------------------------------   84 (1081)
T KOG1538|consen   39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL----------------------------------   84 (1081)
T ss_pred             eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc----------------------------------
Confidence            3345566789999999999999999999999999999999997652                                  


Q ss_pred             eecCCCcccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEE
Q 005956          288 VVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l  365 (667)
                                    -..+ ..|.+.|.|+.|+|-. .|++|+.. ..-+|..+.. .+...+....|.+++|.. ||.+|
T Consensus        85 --------------EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtn-DGqyl  147 (1081)
T KOG1538|consen   85 --------------EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTN-DGQYL  147 (1081)
T ss_pred             --------------cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecC-CCcEE
Confidence                          1112 3699999999999988 88888764 4667876533 233334566889999999 99999


Q ss_pred             EEEecCCeEEEEecCCCeEEE---ecccCCceEEEEEeeCC-----CEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956          366 ISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDG-----KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  437 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg-----~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~  437 (667)
                      +.|-.+|+|.|-+-.....+.   ..+...+|.+++|+|..     ..+++.....++.+|.+.+.....        .+
T Consensus       148 alG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk--------~r  219 (1081)
T KOG1538|consen  148 ALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK--------DR  219 (1081)
T ss_pred             EEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc--------cc
Confidence            999999999998766554443   33467889999999953     578888888999999987543321        12


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      .-+-.-.|+++.++| .+++.|+.|+.+.+|.-. .+..-........|..++..|++++++.|+.||+|..|++..
T Consensus       220 ~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  220 ALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             cCCCCchhheeccCC-cEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            222345789999996 899999999999999743 333222222577899999999999999999999999999754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=2.6e-15  Score=167.13  Aligned_cols=264  Identities=12%  Similarity=0.174  Sum_probs=181.6

Q ss_pred             cccccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  288 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (667)
                      .+-.+...|..|+..|..++.++.. .+++|||.||+|+||+........               +              
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------------~-------------- 1086 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---------------G-------------- 1086 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------------c--------------
Confidence            4455667788999999999998765 899999999999999988521110               0              


Q ss_pred             ecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-------EeEEee---CCCcEEEEEE
Q 005956          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVFD---HHNYVTCVQF  357 (667)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-------~~~~~~---h~~~V~~l~f  357 (667)
                               ..+...++.--...+.++...+.+ .+|.++.||.|++.+++...       +.+...   ....|..-+|
T Consensus      1087 ---------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1087 ---------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAF 1157 (1431)
T ss_pred             ---------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecc
Confidence                     011223333345678888888878 89999999999999987621       111111   2234555566


Q ss_pred             eeCCCC-EEEEEecCCeEEEEecCCCeEE---EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeec
Q 005956          358 NPIDDN-YFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  433 (667)
Q Consensus       358 ~p~d~~-~l~sgs~Dg~v~iwdl~~~~~~---~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~  433 (667)
                      ...... .++.+..-+.|..||++.....   +....++.|++++.+|.++++++|+..|.+.+||++=+... ..+...
T Consensus      1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i-~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-LSWEHP 1236 (1431)
T ss_pred             cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee-ecccCc
Confidence            554555 7888888899999999886643   34456788999999999999999999999999999954433 333332


Q ss_pred             cccCcCCCCeEEEEEccCC---CeEEEEEe-CCCcEEEEECCcceeeEEeC-------------------CCCCCeEEEE
Q 005956          434 DRKKTSGNKITGIQFSRDE---SQRIMITS-EDSKLRILDGVDVIHKFKGL-------------------PKSGSQMSAS  490 (667)
Q Consensus       434 ~~~~~~~~~I~~l~~sp~g---~~~l~~~s-~dg~I~iwd~~~~~~~~~~~-------------------~~~~~v~~v~  490 (667)
                      .     ..+|+.+..+|--   +..+.+++ ..+.|.+|++.+..+.....                   ++.-.....+
T Consensus      1237 ~-----~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~ 1311 (1431)
T KOG1240|consen 1237 A-----RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCG 1311 (1431)
T ss_pred             c-----cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeee
Confidence            2     2667777766542   23444444 57899999976543332211                   1111223344


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          491 FTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       491 ~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      +..-+.++++|+.|..|+.||....+.
T Consensus      1312 ~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1312 VCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             cccCCceeeecCCccceeeccCCCccc
Confidence            444567899999999999999988764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.72  E-value=1.5e-15  Score=151.43  Aligned_cols=284  Identities=17%  Similarity=0.236  Sum_probs=194.1

Q ss_pred             cccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          222 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       222 ~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      ..+|..+.|.++.. .|||||.|..|+||.+.......             ...+                       -.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-------------~~~~-----------------------V~   56 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-------------GDMK-----------------------VE   56 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCC-------------Ccee-----------------------EE
Confidence            35799999999877 99999999999999988632210             0001                       12


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC--------C-----C---eEeEEe-eCCCcEEEEEEeeCCC
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--------C-----N---QCLNVF-DHHNYVTCVQFNPIDD  362 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~--------~-----~---~~~~~~-~h~~~V~~l~f~p~d~  362 (667)
                      .+..|..|...|+++.|+|+| .|++|+.+|.|.+|...        +     .   ...+.. .|...|..++|+| ++
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~  135 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS  135 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence            356778999999999999999 99999999999999765        2     1   122222 3889999999999 99


Q ss_pred             CEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-e-Eeeccc-cC-
Q 005956          363 NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-K-VDFHDR-KK-  437 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~-~~~~~~-~~-  437 (667)
                      +++++++.|..+++||+..+++.. ..+|...+.-++|.|-++++++-+.|...+.+.+........ . ..+... .. 
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~  215 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE  215 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence            999999999999999999999886 567888999999999999999999998777777765443322 1 011110 00 


Q ss_pred             ------------cCCCCeEEEEEccCCCeEEEEEeC----C-----CcEEEEECC---cceeeEEeCCCCCCeEEEEEcC
Q 005956          438 ------------TSGNKITGIQFSRDESQRIMITSE----D-----SKLRILDGV---DVIHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       438 ------------~~~~~I~~l~~sp~g~~~l~~~s~----d-----g~I~iwd~~---~~~~~~~~~~~~~~v~~v~~sp  493 (667)
                                  +...-...++|+|+| .++++.+.    +     +..++++..   .+...+..  ...+...+.|+|
T Consensus       216 ~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~p  292 (434)
T KOG1009|consen  216 REGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSP  292 (434)
T ss_pred             CCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeee
Confidence                        011233467899997 56655431    2     234566533   22222111  233334444433


Q ss_pred             ------------------CCCEEEEEeCCCcEEEEEcCCCCccccc--cccCccceeEEccCCcEEEEecCCC
Q 005956          494 ------------------TGKHIISIGDDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       494 ------------------dg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                                        -+-.+|.+. .+.|+|||.++.......  -+-...+-++|++||.++++++-+.
T Consensus       293 Vy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  293 VYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             eEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence                              233345555 567999999886543221  1234455679999999999976544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.6e-15  Score=144.75  Aligned_cols=257  Identities=18%  Similarity=0.269  Sum_probs=178.3

Q ss_pred             eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC----eEeEEee-CCCcEEEEEEee-CCCCEEEEEecCCeEEEEe
Q 005956          306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNP-IDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p-~d~~~l~sgs~Dg~v~iwd  378 (667)
                      .+|.+-|+++.|.+.| ++++|+.|++|+|||....    .+....+ |.+.|..+.|-+ .-|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            3799999999999999 9999999999999997533    3444444 999999999964 5688999999999999996


Q ss_pred             cCC-------Ce---EEEecccCCceEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeecc-------ccCcC
Q 005956          379 VCE-------KR---VVDWADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-------RKKTS  439 (667)
Q Consensus       379 l~~-------~~---~~~~~~~~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~-------~~~~~  439 (667)
                      -..       .+   ...+.+.+..|+.++|.|  -|-.+++++.||.+|||+....-. ...+.+..       ....+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhccCCcccc
Confidence            521       11   223566788899999999  467889999999999999764321 11222211       12234


Q ss_pred             CCCeEEEEEccCC--CeEEEEEeCC-----CcEEEEECC----cceeeEEeCCCCCCeEEEEEcCCC----CEEEEEeCC
Q 005956          440 GNKITGIQFSRDE--SQRIMITSED-----SKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTG----KHIISIGDD  504 (667)
Q Consensus       440 ~~~I~~l~~sp~g--~~~l~~~s~d-----g~I~iwd~~----~~~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~D  504 (667)
                      ..+..|+.|+|..  ..+|++|+.+     +.++||...    +....-....|..+|.+++|.|+-    ..||+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            4677889998752  2467777765     488888744    333333445689999999999973    579999999


Q ss_pred             CcEEEEEcCCCCcccc--------ccccCccc-eeEEc-cCCcEEEEecCCCCcccccccCCCCCCcCccCcC
Q 005956          505 CRVYVWNYDELCFPSS--------KQKNSVRS-CEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  567 (667)
Q Consensus       505 g~I~iWd~~~~~~~~~--------~~~~~~~~-~~~fs-~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~  567 (667)
                      | |+||++........        ......+. ...|. .+|+.--+.|+-.+..   +.+.+.+++.+-|..
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGti---LsStGdDG~VRLWka  317 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTI---LSSTGDDGCVRLWKA  317 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeE---EeecCCCceeeehhh
Confidence            9 99999986431111        01111111 11132 3456666777776653   566667777777754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=2.6e-16  Score=148.48  Aligned_cols=245  Identities=15%  Similarity=0.269  Sum_probs=176.9

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ...|++|.+.|+++.|-.+++ |.+|..-|.|++|++++.                                        
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~----------------------------------------   45 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE----------------------------------------   45 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecC----------------------------------------
Confidence            345679999999999998875 999999999999999863                                        


Q ss_pred             ccccCCcceeee-ccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE----------------------------
Q 005956          295 FQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV----------------------------  345 (667)
Q Consensus       295 ~~~~~~~~~~l~-gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~----------------------------  345 (667)
                           .++..+. .|...|+.+.--|++.|.+-+.|..+.+|++.-+..+..                            
T Consensus        46 -----r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y  120 (323)
T KOG0322|consen   46 -----RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY  120 (323)
T ss_pred             -----ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence                 3334444 355667777777766777777777777777654211110                            


Q ss_pred             -------------------e-------eCCCcEEEEEEeeCCCC--EEEEEecCCeEEEEecCCCeEE-----------E
Q 005956          346 -------------------F-------DHHNYVTCVQFNPIDDN--YFISGSIDGKVRIWGVCEKRVV-----------D  386 (667)
Q Consensus       346 -------------------~-------~h~~~V~~l~f~p~d~~--~l~sgs~Dg~v~iwdl~~~~~~-----------~  386 (667)
                                         .       ...+.+.|..+....+.  +++.|..+|.|.+||+.++..+           .
T Consensus       121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~  200 (323)
T KOG0322|consen  121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP  200 (323)
T ss_pred             CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence                               0       01233455554332333  4667788999999999986322           2


Q ss_pred             ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC--cceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          387 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN--DLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       387 ~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~--~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                      ...|..+|.++.|.+.-..=+.|+.+..+..|.+...  .++.. .+.+.      +..|..+..-||+ +.+++++-|+
T Consensus       201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk------npGv~gvrIRpD~-KIlATAGWD~  273 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK------NPGVSGVRIRPDG-KILATAGWDH  273 (323)
T ss_pred             hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec------CCCccceEEccCC-cEEeecccCC
Confidence            4567888999999987666778888888999988744  22222 22222      3568889999995 8999999999


Q ss_pred             cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          464 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       464 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      +||||.-++........-|...|++++|+|+...+|++|.|++|-+|++
T Consensus       274 RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  274 RIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999997754333222337899999999999999999999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.71  E-value=3.3e-16  Score=159.06  Aligned_cols=191  Identities=17%  Similarity=0.243  Sum_probs=162.1

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ..-.+.+.+++|+..|++|.++-...|||+++..|.|.|-.+.+...                                 
T Consensus       109 ~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~---------------------------------  155 (673)
T KOG4378|consen  109 RAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK---------------------------------  155 (673)
T ss_pred             HHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc---------------------------------
Confidence            33445677899999999999999999999999999999999886321                                 


Q ss_pred             cCCCcccccCCcceeeec-cccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCE
Q 005956          290 IPDEVFQIEESPLQELHG-HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~g-h~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~  364 (667)
                                  ..+|.. ....|.-+.|++..  +|.+++.+|.|.+||+....++..+.  |..+...|+|+|.+..+
T Consensus       156 ------------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l  223 (673)
T KOG4378|consen  156 ------------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL  223 (673)
T ss_pred             ------------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence                        222322 23456688999877  77799999999999999888877764  99999999999988999


Q ss_pred             EEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      |++.+.|.+|.+||+...+.........+.++++|.++|.+|++|+..|.|..||++..+.+...+..+.      ..|+
T Consensus       224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~------~sVt  297 (673)
T KOG4378|consen  224 LVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD------ASVT  297 (673)
T ss_pred             EEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc------ccee
Confidence            9999999999999999888887777788899999999999999999999999999998888776555544      6699


Q ss_pred             EEEEccC
Q 005956          445 GIQFSRD  451 (667)
Q Consensus       445 ~l~~sp~  451 (667)
                      +++|-|.
T Consensus       298 ~vafq~s  304 (673)
T KOG4378|consen  298 RVAFQPS  304 (673)
T ss_pred             EEEeeec
Confidence            9999886

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1e-16  Score=164.48  Aligned_cols=245  Identities=18%  Similarity=0.320  Sum_probs=170.4

Q ss_pred             cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      .+.++-+.++|.||+|.|+|+.|+.||.+||+|+.|-.+.|||.-.                                  
T Consensus        36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~----------------------------------   81 (758)
T KOG1310|consen   36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE----------------------------------   81 (758)
T ss_pred             HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchh----------------------------------
Confidence            4456777889999999999999999999999999999999999874                                  


Q ss_pred             eecCCCcccccCCcceee-eccccceEEEEecCCC---eEEEEeCCCcEEEEecCCC----------eEeEEee-CCCcE
Q 005956          288 VVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN----------QCLNVFD-HHNYV  352 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~----------~~~~~~~-h~~~V  352 (667)
                                 .++++.+ .||...|.++.|-|..   .+++|+.|+.|+++|+...          .....+. |...|
T Consensus        82 -----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV  150 (758)
T KOG1310|consen   82 -----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRV  150 (758)
T ss_pred             -----------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhh
Confidence                       3444444 4999999999998843   8999999999999999741          2233333 88899


Q ss_pred             EEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-----------ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEe
Q 005956          353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-----------WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKA  420 (667)
Q Consensus       353 ~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-----------~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~  420 (667)
                      .-|+-.|...+.|.+++.||+++-||++......           .....-...++.++| +..+|++|+.+...++||.
T Consensus       151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            9999999666999999999999999998733211           111223467889999 4578999999999999997


Q ss_pred             cCCcceeeeEeeccccCcCCCCeEEEE-EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEE
Q 005956          421 SGNDLKLEKVDFHDRKKTSGNKITGIQ-FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII  499 (667)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~I~~l~-~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~  499 (667)
                      +........-...  .........++. |+|.+   +  ...+|.+.        .      ....++.+.|+|+|.-|+
T Consensus       231 Rr~lks~~s~~~~--~~~pp~~~~cv~yf~p~h---l--kn~~gn~~--------~------~~~~~t~vtfnpNGtElL  289 (758)
T KOG1310|consen  231 RRVLKSFRSDGTM--NTCPPKDCRCVRYFSPGH---L--KNSQGNLD--------R------YITCCTYVTFNPNGTELL  289 (758)
T ss_pred             hhhccCCCCCccc--cCCCCcccchhheecCcc---c--cCcccccc--------c------ceeeeEEEEECCCCcEEE
Confidence            5332221100000  000011122232 33432   1  11111110        0      112357789999998776


Q ss_pred             EEeCCCcEEEEEcCCCCcc
Q 005956          500 SIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       500 sgs~Dg~I~iWd~~~~~~~  518 (667)
                      ..-..-.||++|+..++.+
T Consensus       290 vs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  290 VSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             EeeCCeEEEEEeecCCCCc
Confidence            6555568999999877653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=3.3e-15  Score=163.87  Aligned_cols=273  Identities=15%  Similarity=0.182  Sum_probs=190.6

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      .++-..+.|+|-...++++.+.-.|+|||.+.+...                                            
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-------------------------------------------- 1099 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-------------------------------------------- 1099 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCcee--------------------------------------------
Confidence            335667889999999999998889999999864321                                            


Q ss_pred             ceeee---ccccceEEEEecCCC---eEEEEeCCCcEEEEec-C----CCeEeEEee--------CCCcEEEEEEeeCCC
Q 005956          302 LQELH---GHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQV-G----CNQCLNVFD--------HHNYVTCVQFNPIDD  362 (667)
Q Consensus       302 ~~~l~---gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~-~----~~~~~~~~~--------h~~~V~~l~f~p~d~  362 (667)
                       ..|.   .....|+++.+-...   ++++|+.||.||||+- .    +.+.+..+.        ..+.-.-+.|....|
T Consensus      1100 -~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1100 -NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG 1178 (1387)
T ss_pred             -ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC
Confidence             1111   123568888886532   8999999999999963 2    223333321        111114467877444


Q ss_pred             CEEEEEecCCeEEEEecCCCeEEEe--cccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          363 NYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~~~~~--~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                       +|++++.-..|+|||....+++.-  ......|+++.-+. .|+.+++|..||.+++||.+.........    ..+.|
T Consensus      1179 -~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~----~~R~h 1253 (1387)
T KOG1517|consen 1179 -HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC----VYREH 1253 (1387)
T ss_pred             -eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce----eeccc
Confidence             555555578999999999887753  33445577765443 57999999999999999998765432211    12233


Q ss_pred             CCC--eEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceee-EEeCCC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          440 GNK--ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHK-FKGLPK---SGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       440 ~~~--I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~-~~~~~~---~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      ...  |..+.+.+.|-..|++++.+|.|++||++. .... +....|   ++..+++..++....||+|+. +.|+||++
T Consensus      1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred             CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence            344  999999998766899999999999999875 2222 222112   235899999999999999998 99999999


Q ss_pred             CCCCcccc-------ccccCccceeEEccCCcEEEEecCC
Q 005956          513 DELCFPSS-------KQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       513 ~~~~~~~~-------~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ........       .......+|++|+|.-..+|++..+
T Consensus      1333 ~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1333 SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred             ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence            87654322       2344566899999998888887443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=8.3e-14  Score=149.01  Aligned_cols=275  Identities=26%  Similarity=0.446  Sum_probs=204.8

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      ......+..|...|..++|+|+++++++++. |+.+++|++..                                     
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  187 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-------------------------------------  187 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-------------------------------------
Confidence            3455678899999999999999999999986 99999999984                                     


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeE-Ee-eCCCcEEEEEEeeCCCCEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLN-VF-DHHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~-~~-~h~~~V~~l~f~p~d~~~l~  366 (667)
                              ...+..+.+|...|.+++|+|++ .++ +++.|++|++||...+..+. .+ .|...+ ...|+| ++.+++
T Consensus       188 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~  257 (466)
T COG2319         188 --------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLA  257 (466)
T ss_pred             --------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEE
Confidence                    24466677799999999999988 344 44999999999998787777 34 366665 448999 778899


Q ss_pred             EEecCCeEEEEecCCCeE--EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          367 SGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      +++.|+.+++|++.....  .....|...+.++.|.|++..+++++.++.+.+|+...........     ...+...+.
T Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  332 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-----LKGHEGPVS  332 (466)
T ss_pred             EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-----ecccCCceE
Confidence            999999999999987653  2334667889999999988888889999999999887665543322     122334689


Q ss_pred             EEEEccCCCeEEEEE-eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCCcccccc
Q 005956          445 GIQFSRDESQRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDELCFPSSKQ  522 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s-gs~Dg~I~iWd~~~~~~~~~~~  522 (667)
                      .+.|.++ ...++.+ ..|+.+.+|+........... ....+..+.+++ ...++. +..++.+.+|+...........
T Consensus       333 ~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (466)
T COG2319         333 SLSFSPD-GSLLVSGGSDDGTIRLWDLRTGKPLKTLE-GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD  409 (466)
T ss_pred             EEEECCC-CCEEEEeecCCCcEEeeecCCCceeEEec-CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeecc
Confidence            9999333 2345544 688999999987655222221 222388899988 544444 6889999999999887654433


Q ss_pred             cc-CccceeEEccCCcEEEE
Q 005956          523 KN-SVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       523 ~~-~~~~~~~fs~dg~~lav  541 (667)
                      .. .......+.+++..++.
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~  429 (466)
T COG2319         410 GHTSRVTSLDFSPDGKSLAS  429 (466)
T ss_pred             CCCCcEEEEEECCCCcEEEE
Confidence            33 44445577787777776

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.68  E-value=1e-13  Score=148.26  Aligned_cols=273  Identities=26%  Similarity=0.438  Sum_probs=197.0

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .+..|...|.++.|.+.+..++.++.|+.+.+|+.....                                         
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------------------------------------   98 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-----------------------------------------   98 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-----------------------------------------
Confidence            566899999999999999999999999999999988631                                         


Q ss_pred             ccCCcceeeeccc-cceEEEEe-cCCC--eEEEEe-CCCcEEEEecCC-CeEeEEe-eCCCcEEEEEEeeCCCCEEEEEe
Q 005956          297 IEESPLQELHGHK-GDVLDLAW-SNSN--YLLSCS-MDKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       297 ~~~~~~~~l~gh~-~~V~~l~~-s~~~--~l~s~s-~Dg~I~iWd~~~-~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                         ..+..+.++. ..+..+.+ ++++  .++..+ .|+.+.+|++.. ......+ .|...|..+.|+| ++.++++++
T Consensus        99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  174 (466)
T COG2319          99 ---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGS  174 (466)
T ss_pred             ---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecC
Confidence               1233344432 35666666 6666  344434 499999999997 5555444 5999999999999 888888888


Q ss_pred             c-CCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          370 I-DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       370 ~-Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      . |+.+++|++..+..+. ...|...+.+++|+|++. .++.++.|+.+++||.........  .+.    .+.... ..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~----~~~~~~-~~  247 (466)
T COG2319         175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLS----GHSDSV-VS  247 (466)
T ss_pred             CCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecC----CCCcce-eE
Confidence            5 9999999999866554 555789999999999998 444458999999998774433321  111    122332 22


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCccee-eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc---
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ---  522 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~---  522 (667)
                      .|+|++ .++++++.|+.+++|+...... ......|...+.++.|+|++..+++++.|+.+.+|+...........   
T Consensus       248 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  326 (466)
T COG2319         248 SFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG  326 (466)
T ss_pred             eECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc
Confidence            899996 7888999999999999874332 22214478899999999999999999999999999888776433321   


Q ss_pred             ccCccceeEEccCCcEEEEe
Q 005956          523 KNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       523 ~~~~~~~~~fs~dg~~lav~  542 (667)
                      .......+.|.+++..++++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         327 HEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             cCCceEEEEECCCCCEEEEe
Confidence            22234445553332444444

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=4e-15  Score=161.56  Aligned_cols=248  Identities=18%  Similarity=0.182  Sum_probs=181.7

Q ss_pred             ccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          221 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       221 H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      -...|+|++|+|. ..+||.|..+|.|.+||+..+....                                       ..
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------------------------~s  281 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------------------------PS  281 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------------------------Cc
Confidence            4578999999994 5688888899999999998632110                                       00


Q ss_pred             CcceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeE------eEEe-------eCCCcEEEEEEeeCCCC
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC------LNVF-------DHHNYVTCVQFNPIDDN  363 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~------~~~~-------~h~~~V~~l~f~p~d~~  363 (667)
                      ..-.....|..+|+.+.|..+-   -+++++.||.|+.|+++.-..      ....       .....++++.|.+.+.+
T Consensus       282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~  361 (555)
T KOG1587|consen  282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN  361 (555)
T ss_pred             ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence            0112234689999999997543   599999999999998764322      1111       13347899999999999


Q ss_pred             EEEEEecCCeEEEEec---CCCe------EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc
Q 005956          364 YFISGSIDGKVRIWGV---CEKR------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl---~~~~------~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~  434 (667)
                      .|+.|+.+|.|.--.-   ....      ......|.+.|+++.++|-+..++..+.|-+++||.......+...+    
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~----  437 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL----  437 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh----
Confidence            9999999999887333   2222      22355678899999999987666665559999999987333332211    


Q ss_pred             ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          435 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                        ..+...+++++|||.-+..++++..||.|.|||+..    .......  +......+.|+++|+.|++|...|.|++|
T Consensus       438 --~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~  513 (555)
T KOG1587|consen  438 --DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHIL  513 (555)
T ss_pred             --hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEE
Confidence              222356999999999878999999999999999762    2222222  35566778889999999999999999999


Q ss_pred             EcCCC
Q 005956          511 NYDEL  515 (667)
Q Consensus       511 d~~~~  515 (667)
                      ++...
T Consensus       514 ~l~~~  518 (555)
T KOG1587|consen  514 KLSES  518 (555)
T ss_pred             EcCch
Confidence            99754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.68  E-value=3.6e-14  Score=149.49  Aligned_cols=248  Identities=13%  Similarity=0.212  Sum_probs=161.4

Q ss_pred             ccccEEEEEEcCCCCEEEEEE-CCCcEEEEEcCC-CceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          221 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs-~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      +.+....++++|++++|++++ .++.|.+|++.. +...                                         
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-----------------------------------------   71 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-----------------------------------------   71 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------------------------------------
Confidence            345677899999999987765 478899999863 1110                                         


Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEecCCC----eEeEEeeCCCcEEEEEEeeCCCCEEEEEe-cC
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCN----QCLNVFDHHNYVTCVQFNPIDDNYFISGS-ID  371 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~~----~~~~~~~h~~~V~~l~f~p~d~~~l~sgs-~D  371 (667)
                        .+... ........++|+|++ +|++++ .++.|.+|++.+.    +.+..+.+.....+++++| +++++++++ .+
T Consensus        72 --~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~  147 (330)
T PRK11028         72 --FAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKE  147 (330)
T ss_pred             --Eeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCC
Confidence              00111 112245679999999 666555 4889999999743    2333333445678889999 888776554 56


Q ss_pred             CeEEEEecCCC-eEEE------ecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCC--cceee-eEeeccccCcCC
Q 005956          372 GKVRIWGVCEK-RVVD------WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGN--DLKLE-KVDFHDRKKTSG  440 (667)
Q Consensus       372 g~v~iwdl~~~-~~~~------~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~--~~~~~-~~~~~~~~~~~~  440 (667)
                      +.|.+||+.+. .+..      .......+..+.|+|+|++++++.. ++.|.+|++...  ..... .+..........
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~  227 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT  227 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence            99999999763 2211      1122345678999999999988876 899999999742  22211 121111111112


Q ss_pred             CCeEEEEEccCCCeEEEEEe-CCCcEEEEECCcc--eeeEEeC-CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 005956          441 NKITGIQFSRDESQRIMITS-EDSKLRILDGVDV--IHKFKGL-PKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDE  514 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~~--~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~  514 (667)
                      .....+.++|+| ++++++. .++.|.+|++...  ...+... ........+.|+|+|++|+++.. +++|.+|+++.
T Consensus       228 ~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        228 RWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             ccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            233468999997 6666664 5789999987421  1122211 11234567899999999998875 88999998853

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=4.3e-14  Score=153.67  Aligned_cols=284  Identities=17%  Similarity=0.242  Sum_probs=203.4

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .|+-.++|.++||+++++|+|..||.|.||.--...                                         ...
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----------------------------------------~~~  241 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-----------------------------------------DDS  241 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccc-----------------------------------------ccc
Confidence            577789999999999999999999999999643200                                         011


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      ...+.++=|...|.+++|+++| +|++|+..|.+-+|.+++++....-.-..+|..+.++| |+.+.+....|..|.+..
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence            2356677899999999999999 99999999999999999999433335888999999999 999999889999999997


Q ss_pred             cCCCeEEE----e--------cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccC---cCCCC
Q 005956          379 VCEKRVVD----W--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKK---TSGNK  442 (667)
Q Consensus       379 l~~~~~~~----~--------~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~---~~~~~  442 (667)
                      ..+.....    +        ....+-.+.++++|.-+.++..+..|.|.+||+-+.....+ .+.......   .+.-.
T Consensus       321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~  400 (792)
T KOG1963|consen  321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVG  400 (792)
T ss_pred             ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEe
Confidence            75544221    1        11245578899999778889999999999999988776644 222221111   12235


Q ss_pred             eEEEEEccCCCeEEEEEe--------CCC--cEEEEECCcceee-----EEeCCCCCCeEEEEEc-CCCC-EEEEEeCCC
Q 005956          443 ITGIQFSRDESQRIMITS--------EDS--KLRILDGVDVIHK-----FKGLPKSGSQMSASFT-TTGK-HIISIGDDC  505 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s--------~dg--~I~iwd~~~~~~~-----~~~~~~~~~v~~v~~s-pdg~-~l~sgs~Dg  505 (667)
                      ++.++.+..| .++++.-        .||  .+++|-.....+.     ....+|...+...++. +... ..++++.||
T Consensus       401 itav~~~~~g-s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg  479 (792)
T KOG1963|consen  401 ITAVARSRFG-SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG  479 (792)
T ss_pred             eeeehhhccc-eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence            6777777774 7777763        333  5677864432222     2234576666666663 3333 789999999


Q ss_pred             cEEEEEcCCCCccc------c-----ccccCccceeEEccCCcEEEEecCCC
Q 005956          506 RVYVWNYDELCFPS------S-----KQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       506 ~I~iWd~~~~~~~~------~-----~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .++||-+.+.+...      .     ...+......+|+-||..||++..+.
T Consensus       480 ~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~  531 (792)
T KOG1963|consen  480 DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDT  531 (792)
T ss_pred             eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCE
Confidence            99999995433211      1     12345555679999999999985543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=8e-15  Score=140.22  Aligned_cols=245  Identities=13%  Similarity=0.216  Sum_probs=176.5

Q ss_pred             cccccEEEEEEcCCCC-----EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          220 AHKGCIWTLKFSPDGR-----YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~-----~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .|.-+++.+.|.|+..     +|||.+.  .+|+|.+...+...                  ..             ..+
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~------------------~~-------------~~~  140 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRV------------------EL-------------QSV  140 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCce------------------eh-------------hhh
Confidence            6889999999999863     6777654  69999987421100                  00             000


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe----EeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                           -....-..+.+++++..|+.-.  ++.+++-|.|..|||++++.    ..+.+.|...|..++|....-+.|++.
T Consensus       141 -----L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv  215 (364)
T KOG0290|consen  141 -----LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV  215 (364)
T ss_pred             -----hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe
Confidence                 0001122456789999998754  88999999999999999873    344557999999999998566899999


Q ss_pred             ecCCeEEEEecCCCe---EEEecc-cCCceEEEEEee-CCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SIDGKVRIWGVCEKR---VVDWAD-VRDVISAICYIP-DGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~---~~~~~~-~~~~v~~v~~sp-dg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +.||.||+||++...   ++.-.. ...+...++|++ |-+++|+-. ....|.+.|++........      ...|.+.
T Consensus       216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~------L~~H~a~  289 (364)
T KOG0290|consen  216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR------LRNHQAS  289 (364)
T ss_pred             cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh------hhcCccc
Confidence            999999999998754   333222 256788899988 456777644 4457999999976655432      2334689


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCccee-----eEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYV  509 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-----~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~i  509 (667)
                      |++++|.|..+.+|++++.|.++.|||+.....     .+......+.|..+.|++ .+.+|+.+.. +.+.|
T Consensus       290 VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             ccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            999999999889999999999999999875433     111122467899999985 5677877763 44443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=2.3e-15  Score=151.26  Aligned_cols=192  Identities=26%  Similarity=0.389  Sum_probs=148.0

Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceee
Q 005956          226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  305 (667)
Q Consensus       226 ~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (667)
                      .+++|+.+|..|++|+.||++|||++.+.                                             ..+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---------------------------------------------~t~l~e  182 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---------------------------------------------LTILEE  182 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc---------------------------------------------hhhhhh
Confidence            68999999999999999999999997642                                             334556


Q ss_pred             eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCC---CEEEE--EecCCeEEE
Q 005956          306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD---NYFIS--GSIDGKVRI  376 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~---~~l~s--gs~Dg~v~i  376 (667)
                      ..|.+.|.+|.|+||+ .|++-+.| ..+||++.++.++....   .......+.|+. ++   .+++.  ...-+.|+.
T Consensus       183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~  260 (398)
T KOG0771|consen  183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRL  260 (398)
T ss_pred             HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeE
Confidence            6899999999999999 99999999 99999999997766654   333566778887 55   33333  334456777


Q ss_pred             EecCCC------eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          377 WGVCEK------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       377 wdl~~~------~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      ||+...      +..+.......|++++.++||+++++|+.+|.|-+|+..+.+....      -+..|...||.++|+|
T Consensus       261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~------vk~aH~~~VT~ltF~P  334 (398)
T KOG0771|consen  261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY------VKEAHLGFVTGLTFSP  334 (398)
T ss_pred             EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe------ehhhheeeeeeEEEcC
Confidence            765432      1222333456799999999999999999999999999876554322      2455678999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECC
Q 005956          451 DESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~  471 (667)
                      + .++++..+.+.++.|..+.
T Consensus       335 d-sr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  335 D-SRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             C-cCcccccccCCceeEEEEe
Confidence            9 5889999999888887643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.63  E-value=9.7e-15  Score=149.77  Aligned_cols=266  Identities=15%  Similarity=0.280  Sum_probs=172.7

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecc-cCCCCceeecCCCcccc-
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK-KKSSHVPVVIPDEVFQI-  297 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-  297 (667)
                      .|...|.|+.|+.+...+.++.++..+.-|++.+.........++. +......+...... +......+...+..+.+ 
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df-~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDF-VPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCccc-CCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            3666677999998877776666555555556554322111111110 00000000000000 00111111111111111 


Q ss_pred             --cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          298 --EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       298 --~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                        ..+.-.....|.+.|.+-.|+|+| -|++++.||.|++|.-...-.....+...+|.|++|.|+..+.+++.+  +.+
T Consensus        91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~  168 (737)
T KOG1524|consen   91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHI  168 (737)
T ss_pred             cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeE
Confidence              223345567899999999999999 999999999999998543222222357789999999995555555433  567


Q ss_pred             EEEecCC-CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          375 RIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       375 ~iwdl~~-~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      .|=.+.. .++++|..|.+.|.++.|++..+.+++|+.|-..++||..+..+-.        ...|..+|++++|.|+  
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITSva~npd--  238 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT--------SAAEEYAITSVAFNPE--  238 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc--------CChhccceeeeeeccc--
Confidence            7766654 5678999999999999999999999999999999999987654321        2345689999999998  


Q ss_pred             eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          454 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                      ..++.++.. +++          +.. ++.+.|..++||+||..+++|...|.+.+=
T Consensus       239 ~~~~v~S~n-t~R----------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  239 KDYLLWSYN-TAR----------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             cceeeeeee-eee----------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            455555542 333          222 367899999999999999999988876553

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.5e-14  Score=143.13  Aligned_cols=298  Identities=18%  Similarity=0.241  Sum_probs=204.8

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC------CCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~------~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                      .+.+.+|.+.|.+|.|+.++ +|++|+.|..+++|+++      +.+++.+..  |...|.|++|.. ...++++|..++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~  127 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcc
Confidence            34567999999999999988 99999999999999985      346666665  668999999998 788999999999


Q ss_pred             eEEEEecCCCeEEEecccCC---ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          373 KVRIWGVCEKRVVDWADVRD---VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~---~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      +|...|+.+.+.+....+..   .|+.+..+|-.+.|++.+.+|.+.+||.+........+.+..    .+.....+.|+
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN----~~~~F~t~~F~  203 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN----SGKNFYTAEFH  203 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC----CCccceeeeec
Confidence            99999999999888776655   899999999999999999999999999998765544333222    23668889999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCccee---e---EEeCCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc
Q 005956          450 RDESQRIMITSEDSKLRILDGVDVIH---K---FKGLPK-SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  522 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~~~---~---~~~~~~-~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~  522 (667)
                      |..+.+|++.+..+-+-+||.+....   .   +.+... ...-+++.|+|+|..+.+--....-.+||+....+...+.
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            99888999999999999999774322   1   122111 2234678999999998887666666778887765544321


Q ss_pred             c--------cCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCc-----------------cCcCCCCCCcccCC
Q 005956          523 K--------NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQ-----------------KWDNLETAPWIRDS  577 (667)
Q Consensus       523 ~--------~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~-----------------~w~~~~~~~~~~~~  577 (667)
                      .        ......++|-.|-. ++.+...-+--+..++.....+.|.                 -...+..+.-.+..
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ  362 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ  362 (609)
T ss_pred             cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence            1        11122335655433 5544333322221111111111110                 01122233334556


Q ss_pred             CcccCCCCCCC-CCCCCCCCCCCCCcCCC
Q 005956          578 ERFSLGSWFSN-DGPCRGSATWPAEKLPL  605 (667)
Q Consensus       578 ~~fS~~~~~~~-~g~~~g~~~w~~~~~~~  605 (667)
                      .+|++..-++. .|-.+.-..|...|+|.
T Consensus       363 VRF~~H~~~l~SSGVE~~~KlWS~~r~P~  391 (609)
T KOG4227|consen  363 VRFSQHNNLLVSSGVENSFKLWSDHRLPW  391 (609)
T ss_pred             eeecCCcceEeccchhhheeccccccCCc
Confidence            78888765544 33333447798888773

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.7e-14  Score=133.41  Aligned_cols=245  Identities=14%  Similarity=0.221  Sum_probs=175.4

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ..|.+-+++|.++||+.|..+|.|.+..+.+......           .                        .....++
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------~------------------------~~gk~~i   55 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------E------------------------PPGKLKI   55 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-----------C------------------------CCCCcce
Confidence            3577778999999999999999999999886321100           0                        0013445


Q ss_pred             eeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeE----eEEe-----eC-----CCcEEEEEEeeCCCCEEEEE
Q 005956          303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC----LNVF-----DH-----HNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~----~~~~-----~h-----~~~V~~l~f~p~d~~~l~sg  368 (667)
                      ..+++|.++|..++|+ +.+|++|+. |.|+-|.......    ....     .|     -..|+++-..| ..+-++.+
T Consensus        56 v~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~A  132 (325)
T KOG0649|consen   56 VPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFA  132 (325)
T ss_pred             eeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEe
Confidence            6668999999999998 446777665 9999987643211    1111     12     23688999999 66666666


Q ss_pred             ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc---cCc-CCCCe
Q 005956          369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKT-SGNKI  443 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~---~~~-~~~~I  443 (667)
                      +.|+.++.||+++|++.. +.+|.+.+.++.-......+++|+.||++++||+++.+.... +....+   .+. .+..|
T Consensus       133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~-ie~yk~~~~lRp~~g~wi  211 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM-IEPYKNPNLLRPDWGKWI  211 (325)
T ss_pred             cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE-eccccChhhcCcccCcee
Confidence            789999999999999875 788999999999866566899999999999999998876543 221111   111 23557


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      .+++-+.+   ++++|+ ...+.+|.++  +..+.|..   ..++..+.|-  .+.++++++.+.|.-|.+...
T Consensus       212 gala~~ed---WlvCGg-Gp~lslwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  212 GALAVNED---WLVCGG-GPKLSLWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             EEEeccCc---eEEecC-CCceeEEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeeccE
Confidence            77777654   555554 4579999988  45555554   4567777884  457888888889999987653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.63  E-value=2.1e-14  Score=137.19  Aligned_cols=255  Identities=15%  Similarity=0.264  Sum_probs=182.3

Q ss_pred             cceeeccccccEEEEEEcCCC-CEEEEEECC-------CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDG-RYLASGGED-------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg-~~Latgs~D-------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (667)
                      +.+.|..|.+.|+.++-+|-. +.|+|+..+       -.+.||.+.......                         ..
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-------------------------~~  109 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-------------------------NS  109 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-------------------------cc
Confidence            345667899999999999954 566666442       236678776421100                         00


Q ss_pred             ceeecCCCcccccCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE-eEEe------eCCCcEEEEE
Q 005956          286 VPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF------DHHNYVTCVQ  356 (667)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~-~~~~------~h~~~V~~l~  356 (667)
                                 ..-..+..+. .+-+.|.|+.|.|++ .+++-. |..|.+|++..+.. +..+      .+....++-+
T Consensus       110 -----------~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~  177 (370)
T KOG1007|consen  110 -----------STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGA  177 (370)
T ss_pred             -----------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccc
Confidence                       0012233333 455689999999988 666554 88999999987765 3333      2566788899


Q ss_pred             Eee-CCCCEEEEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEee
Q 005956          357 FNP-IDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF  432 (667)
Q Consensus       357 f~p-~d~~~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~  432 (667)
                      |+| .+++.+++. .|+++..||+++.....  -..|...|..+.|+|+-+ +|++++.||.|+|||.+..+.+..... 
T Consensus       178 WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-  255 (370)
T KOG1007|consen  178 WSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-  255 (370)
T ss_pred             cCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-
Confidence            999 567777665 58999999999876553  234667899999999876 567788999999999998877665333 


Q ss_pred             ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-------------------------------ceeeEEeCC
Q 005956          433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-------------------------------VIHKFKGLP  481 (667)
Q Consensus       433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-------------------------------~~~~~~~~~  481 (667)
                           .|...|.++.|+|.-.++|++++.|..|.+|....                               .+.++  ..
T Consensus       256 -----~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty--de  328 (370)
T KOG1007|consen  256 -----GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY--DE  328 (370)
T ss_pred             -----CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc--cc
Confidence                 34578999999998778999999999999995321                               01122  23


Q ss_pred             CCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCC
Q 005956          482 KSGSQMSASFTTTGKH-IISIGDDCRVYVWNYDE  514 (667)
Q Consensus       482 ~~~~v~~v~~spdg~~-l~sgs~Dg~I~iWd~~~  514 (667)
                      |...|.+++||.-..+ +|+-+.||.+.|=++..
T Consensus       329 hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  329 HEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            7889999999876666 56779999998876654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.63  E-value=8.2e-14  Score=135.19  Aligned_cols=204  Identities=16%  Similarity=0.212  Sum_probs=149.4

Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecCCC--------------eEeEEeeCCCcEEEEEEee------CCCCEEEEEec
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--------------QCLNVFDHHNYVTCVQFNP------IDDNYFISGSI  370 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~--------------~~~~~~~h~~~V~~l~f~p------~d~~~l~sgs~  370 (667)
                      ...+.|+||| .|++-+.|..+++|++...              .....+.....|....|-+      .+.+++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            4568899999 9999999999999997421              1112223556777777763      17789999999


Q ss_pred             CCeEEEEecCCCeEEE---ecccCCc---eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee--eEeeccccCcCCCC
Q 005956          371 DGKVRIWGVCEKRVVD---WADVRDV---ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--KVDFHDRKKTSGNK  442 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~---~~~~~~~---v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~--~~~~~~~~~~~~~~  442 (667)
                      +.-|++||.-++++..   ..+|.+.   ..+++|+|||..|++|. ...|++||+........  ....++ +....+-
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-k~gq~gi  209 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKGI  209 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc-cccccce
Confidence            9999999999998763   3334333   56899999999998875 56999999943222222  111111 2334577


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCc
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCF  517 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~  517 (667)
                      |.+++|+|-....+++++....+-||.-......+...+|.+.|+.+.|.++|+.|++|+. |-.|..||+.....
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD  285 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence            8999999998889999999888777754433333333458999999999999999999975 67899999986543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.62  E-value=7.1e-13  Score=139.66  Aligned_cols=228  Identities=12%  Similarity=0.104  Sum_probs=149.4

Q ss_pred             cceEEEEecCCC-eEEEE-eCCCcEEEEecC-CCeE--eEEeeCCCcEEEEEEeeCCCCEEEEEec-CCeEEEEecCC-C
Q 005956          310 GDVLDLAWSNSN-YLLSC-SMDKTVRMWQVG-CNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCE-K  382 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~-s~Dg~I~iWd~~-~~~~--~~~~~h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~-~  382 (667)
                      +....++++|++ +|+.+ ..++.|.+|++. +++.  +...........++|+| +++++++++. ++.|.+|++.+ +
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence            456778999998 66554 458899999997 3332  23333444677899999 8888887764 78999999974 2


Q ss_pred             e---EEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceee----eEeeccccCcCCCCeEEEEEccCCCe
Q 005956          383 R---VVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       383 ~---~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~----~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      .   .+........+..++++|+|+++++++ .++.|.+||+.+......    .....     .+.....+.|+|+| +
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-----~g~~p~~~~~~pdg-~  187 (330)
T PRK11028        114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-----EGAGPRHMVFHPNQ-Q  187 (330)
T ss_pred             CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-----CCCCCceEEECCCC-C
Confidence            2   222222334567789999999887655 568999999976332110    11111     12445689999997 5


Q ss_pred             EEEEEeC-CCcEEEEECCc----c--eeeEEeCC----CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCc--ccc
Q 005956          455 RIMITSE-DSKLRILDGVD----V--IHKFKGLP----KSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCF--PSS  520 (667)
Q Consensus       455 ~l~~~s~-dg~I~iwd~~~----~--~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~--~~~  520 (667)
                      +++++.. ++.|.+||+..    .  ...+...+    +......+.|+|+|++|+++.. ++.|.+|+++....  ...
T Consensus       188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~  267 (330)
T PRK11028        188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE  267 (330)
T ss_pred             EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence            6655554 89999999752    1  22222111    1123346889999999999864 68999999965321  111


Q ss_pred             cc--ccCccceeEEccCCcEEEEecC
Q 005956          521 KQ--KNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       521 ~~--~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      .+  .......+.|+|||++|.++-.
T Consensus       268 ~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        268 GHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEeccccCCceEECCCCCEEEEEEc
Confidence            11  1122335789999999999754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4.5e-14  Score=138.12  Aligned_cols=193  Identities=14%  Similarity=0.218  Sum_probs=151.1

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC-CCCEEEEEecCCeEEEEecCCCeEE---EecccC-Cce
Q 005956          321 NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKRVV---DWADVR-DVI  394 (667)
Q Consensus       321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~-d~~~l~sgs~Dg~v~iwdl~~~~~~---~~~~~~-~~v  394 (667)
                      ..++++-..|+|++||..+++.+..|+ +...+..+.|... .+..+++|+.||+|++||++.....   .+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            368888889999999999999999996 7778888888763 4678999999999999999986532   344443 466


Q ss_pred             EEEEEeeCCCEEEEEec----CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956          395 SAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  470 (667)
Q Consensus       395 ~~v~~spdg~~l~~gs~----dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~  470 (667)
                      .+++..-.++.+++|+.    +-.+.+||++..+.....     -...|...||+++|+|.++++|++|+.||-|.|||+
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~-----~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ-----LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh-----hhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            77777667888888864    568999999987664321     134567899999999999999999999999999998


Q ss_pred             Ccc---eeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcc
Q 005956          471 VDV---IHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       471 ~~~---~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      ...   -.......+...|..+.|..++ +.|.+-+.....++|+++.+...
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence            632   1111222356779999997776 56888889999999999988743

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=8.4e-14  Score=151.68  Aligned_cols=197  Identities=16%  Similarity=0.149  Sum_probs=138.1

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe-cCCeEE-
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVR-  375 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs-~Dg~v~-  375 (667)
                      ...+..|...+.+.+|+|+| .|+.++.+   ..|++||+.+++.............++|+| |++.|+.++ .+|.+. 
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~I  274 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNI  274 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEE
Confidence            34566788889999999999 77776644   369999999886544333333445789999 898887764 677655 


Q ss_pred             -EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          376 -IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       376 -iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                       +||+.++....+..+...+..++|+|||+.|+..+ .+|...||++.........+   ..    ..  ....|+|+| 
T Consensus       275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~----~~--~~~~~SpDG-  344 (429)
T PRK01742        275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GG----RG--YSAQISADG-  344 (429)
T ss_pred             EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cC----CC--CCccCCCCC-
Confidence             55777787777777777788999999999887665 57888999876433322211   11    12  357899997 


Q ss_pred             eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          454 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      ++|+.++.+ .+.+||+.......... . .....++|+|||++|+.++.++.+.+|.+
T Consensus       345 ~~ia~~~~~-~i~~~Dl~~g~~~~lt~-~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        345 KTLVMINGD-NVVKQDLTSGSTEVLSS-T-FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CEEEEEcCC-CEEEEECCCCCeEEecC-C-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            566666665 46669976543222111 1 12356789999999999999998888875

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.62  E-value=8.4e-14  Score=135.18  Aligned_cols=241  Identities=19%  Similarity=0.334  Sum_probs=182.1

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      --..+|+|.+|++|+..+|.+.....|.||.....+                                          ..
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------------------------~w   45 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------------------------LW   45 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------------------------Cc
Confidence            345789999999999999999999999999887522                                          13


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEec-CCCe---EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQ---CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~-~~~~---~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                      ++.+++..|...|+.+.|+|.. .|++|+.|..-+||.. ..++   .+..+.++..++++.|+| .++.|++|+....|
T Consensus        46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~i  124 (361)
T KOG1523|consen   46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLI  124 (361)
T ss_pred             eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEE
Confidence            5688999999999999999988 9999999999999998 4443   233446999999999999 99999999999999


Q ss_pred             EEEecCCCeEE-----EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee--------eEee---ccccCc
Q 005956          375 RIWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KVDF---HDRKKT  438 (667)
Q Consensus       375 ~iwdl~~~~~~-----~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~--------~~~~---~~~~~~  438 (667)
                      .||-.+...--     .-..++..|+++.|+|++-++++|+.|+.+++|..--......        .+.+   ......
T Consensus       125 sVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~  204 (361)
T KOG1523|consen  125 SVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS  204 (361)
T ss_pred             EEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence            99988765532     2345677899999999999999999999999997531111000        0000   001113


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      ..+.|..+.|+|+| ..|+-.+.|+.+.+-|.....+.. ......-+..++.|-.+ +.++.++.|.
T Consensus       205 ~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~c  270 (361)
T KOG1523|consen  205 SGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE-NSVVAAGYDC  270 (361)
T ss_pred             CCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC-CceeecCCCC
Confidence            46889999999997 889999999999999966443111 11112366777777544 4566666664

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=8.2e-14  Score=144.33  Aligned_cols=295  Identities=15%  Similarity=0.184  Sum_probs=189.3

Q ss_pred             cccccccccccceeeccccccEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccC
Q 005956          204 KKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK  282 (667)
Q Consensus       204 k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~L-atgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (667)
                      +.......+.+.|.| .|...-+.|..+|||+|| |||..--.|++||+.+.....-. +.+..      .-.+.+....
T Consensus        34 kd~~~~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-hlDae------~V~feiLsDD  105 (703)
T KOG2321|consen   34 KDVDYRQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-HLDAE------VVDFEILSDD  105 (703)
T ss_pred             hchHHHHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-ccccc------ceeEEEeccc
Confidence            333344445555666 588899999999999975 55667889999999864321100 00000      0000000000


Q ss_pred             CCCceeecCCCcccccCCc-ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEee
Q 005956          283 SSHVPVVIPDEVFQIEESP-LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP  359 (667)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~-~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p  359 (667)
                      -...++.-.+....+..+. .+.-.--...-.+++++.-. -|+.++....|+=++++.|..+..|. ....++++..++
T Consensus       106 ~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~  185 (703)
T KOG2321|consen  106 YSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE  185 (703)
T ss_pred             hhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence            0000000000000000000 00000001223455665433 45555555678889999999999997 447999999999


Q ss_pred             CCCCEEEEEecCCeEEEEecCCCeEEEec-------ccCC-----ceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee
Q 005956          360 IDDNYFISGSIDGKVRIWGVCEKRVVDWA-------DVRD-----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (667)
Q Consensus       360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~-------~~~~-----~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~  427 (667)
                       -..+|++|+.+|.|-+||.+....+...       .+.+     .|+++.|+.+|-.+++|+.+|.+.|||++..+...
T Consensus       186 -~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~  264 (703)
T KOG2321|consen  186 -EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL  264 (703)
T ss_pred             -ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence             7779999999999999999987654322       1222     39999999999999999999999999999877654


Q ss_pred             eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005956          428 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV  507 (667)
Q Consensus       428 ~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I  507 (667)
                      ..-+      ...-+|..+.|.+.+..-.+++.....++|||-.+........ ....+..+|+-|++.+++++-+++.+
T Consensus       265 ~kdh------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  265 VKDH------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKM  337 (703)
T ss_pred             eccc------CCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcc
Confidence            3211      1236899999988754555666666789999966544433332 45668999999999999999999888


Q ss_pred             EEEEcCC
Q 005956          508 YVWNYDE  514 (667)
Q Consensus       508 ~iWd~~~  514 (667)
                      ..|=+..
T Consensus       338 ~~yyiP~  344 (703)
T KOG2321|consen  338 HTYYIPS  344 (703)
T ss_pred             eeEEccc
Confidence            7776654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=6.3e-13  Score=131.55  Aligned_cols=236  Identities=12%  Similarity=0.182  Sum_probs=173.3

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      ...|..+.|+.|...|..|+.|| .++|.......                                             
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---------------------------------------------   38 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---------------------------------------------   38 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---------------------------------------------
Confidence            44677888999999999999998 67887764110                                             


Q ss_pred             ceeeeccccceEEEEecCCCeEEEEeCC--CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          302 LQELHGHKGDVLDLAWSNSNYLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~~l~s~s~D--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      ..........|.-+-|+.+ +++..+.+  +.+++.++..+..+..+.....|.++.++.   +.|+++-.+ .|+|||+
T Consensus        39 ~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI  113 (391)
T KOG2110|consen   39 CFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR---KRLVVCLEE-SIYIYDI  113 (391)
T ss_pred             hhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---ceEEEEEcc-cEEEEec
Confidence            0000111234555666644 33333333  459999999999999999999999999964   556665544 4999999


Q ss_pred             CCCeEEEec----ccCCceEEEEEeeCCCEEEEE--ecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          380 CEKRVVDWA----DVRDVISAICYIPDGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       380 ~~~~~~~~~----~~~~~v~~v~~spdg~~l~~g--s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      .+.+++...    .+...+.++.+++.+.+++.-  ...|.|.+||+.+-+... .+      ..|.+.+.+++|+++| 
T Consensus       114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-~I------~aH~~~lAalafs~~G-  185 (391)
T KOG2110|consen  114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN-TI------NAHKGPLAALAFSPDG-  185 (391)
T ss_pred             ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee-EE------EecCCceeEEEECCCC-
Confidence            999987532    344557777777777788873  356899999998654432 22      2445899999999997 


Q ss_pred             eEEEEEeCCCc-EEEEECCcceeeEEeCCC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          454 QRIMITSEDSK-LRILDGVDVIHKFKGLPK--SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       454 ~~l~~~s~dg~-I~iwd~~~~~~~~~~~~~--~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      .+|++++..|+ |||+.+.+....++....  ...|.+++|+|++++|++.|+.++|+|+.++...
T Consensus       186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            89999999995 799998866555544322  4567899999999999999999999999998654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=3.2e-13  Score=132.96  Aligned_cols=272  Identities=17%  Similarity=0.186  Sum_probs=184.0

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      +-.+..++|++.-..+|.+..|-+|+||+-...                                              .
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst----------------------------------------------~  131 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST----------------------------------------------C  131 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC----------------------------------------------C
Confidence            345778999997778999999999999987641                                              1


Q ss_pred             ceeee-ccccceEEEEecCCC--eEEEEeCCCcEEEEecCCC------------eEeEEee--CCCcEEEEEEeeCCCCE
Q 005956          302 LQELH-GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN------------QCLNVFD--HHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       302 ~~~l~-gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~------------~~~~~~~--h~~~V~~l~f~p~d~~~  364 (667)
                      ...++ .....|++++|-|.+  .|+.|+.. -|.||.....            .+...++  .+.+|+.++|++ |+..
T Consensus       132 pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~  209 (445)
T KOG2139|consen  132 PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTI  209 (445)
T ss_pred             CceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCE
Confidence            11222 234679999999977  67777664 5999976421            1222333  336899999999 8999


Q ss_pred             EEEEec-CCeEEEEecCCCeEEEec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          365 FISGSI-DGKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       365 l~sgs~-Dg~v~iwdl~~~~~~~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +++++. |..|.|||..++..+.+. ...+.++-+.|+|||.+|++++-|+..++|+...... .+.+.+.      .+.
T Consensus       210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw~lg------sgr  282 (445)
T KOG2139|consen  210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERWILG------SGR  282 (445)
T ss_pred             EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce-ecceecc------CCc
Confidence            998886 467999999999887755 4556788999999999999999999999996653322 2222111      258


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEEC--Ccc----------eeeE------EeCC----CCCCeEEEEEcCCCCEEEE
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDG--VDV----------IHKF------KGLP----KSGSQMSASFTTTGKHIIS  500 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~--~~~----------~~~~------~~~~----~~~~v~~v~~spdg~~l~s  500 (667)
                      |...+|+|.|..+|++.+..-.|+-...  +..          ....      ....    -.+.+.+++|.|.|.|||+
T Consensus       283 vqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav  362 (445)
T KOG2139|consen  283 VQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV  362 (445)
T ss_pred             eeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence            9999999999777777766555443321  100          0000      0001    2467789999999999998


Q ss_pred             EeCCC--------cEEEEEcCCCCccc-c---ccccCccceeEEcc---CCcEEEEecCCCCc
Q 005956          501 IGDDC--------RVYVWNYDELCFPS-S---KQKNSVRSCEHFFS---EGVSVAVQWPGIGT  548 (667)
Q Consensus       501 gs~Dg--------~I~iWd~~~~~~~~-~---~~~~~~~~~~~fs~---dg~~lav~w~~~~~  548 (667)
                      .-..+        .|.+||....-... .   .-.......+.|+|   +|..|.++|+...-
T Consensus       363 ~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGri  425 (445)
T KOG2139|consen  363 IFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRI  425 (445)
T ss_pred             EEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCce
Confidence            75433        46677765432211 1   01112244556665   68899999997643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=9e-15  Score=150.36  Aligned_cols=235  Identities=20%  Similarity=0.262  Sum_probs=165.2

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe--eCCCcEEEEEEeeC-CCCEEEEEecCCeEEEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI-DDNYFISGSIDGKVRIW  377 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~-d~~~l~sgs~Dg~v~iw  377 (667)
                      ..++.||++.|++|.|+.+| +|++|+.|-.+.|||.-..+.+..+  +|...|.++.|-|. ++.++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            46788999999999999999 9999999999999999988888887  49999999999995 45578899999999999


Q ss_pred             ecCCCe-----------EEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeecc---ccCcCCCC
Q 005956          378 GVCEKR-----------VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNK  442 (667)
Q Consensus       378 dl~~~~-----------~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~---~~~~~~~~  442 (667)
                      |+...+           ...+..|...|..++.-|++ +.+.+++.||+|+-||++...........+.   ......-.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            998521           12356677889999999988 8899999999999999986332111000000   01111234


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc--c
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS--S  520 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~--~  520 (667)
                      ..++..+|....+|++|+.|--.++||.+.....+......      .+.|-       -.++.|+-|-....+...  .
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~------~~~pp-------~~~~cv~yf~p~hlkn~~gn~  269 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM------NTCPP-------KDCRCVRYFSPGHLKNSQGNL  269 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc------cCCCC-------cccchhheecCccccCccccc
Confidence            67899999988999999999999999976554444332110      01110       012222222221111111  1


Q ss_pred             ccccCccceeEEccCCcEEEEecCCCCcc
Q 005956          521 KQKNSVRSCEHFFSEGVSVAVQWPGIGTE  549 (667)
Q Consensus       521 ~~~~~~~~~~~fs~dg~~lav~w~~~~~~  549 (667)
                      .+.....+++.|+|+|.-|.++|++..--
T Consensus       270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVY  298 (758)
T KOG1310|consen  270 DRYITCCTYVTFNPNGTELLVSWGGEHVY  298 (758)
T ss_pred             ccceeeeEEEEECCCCcEEEEeeCCeEEE
Confidence            12223456789999999999999987543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.59  E-value=2.1e-13  Score=148.31  Aligned_cols=236  Identities=15%  Similarity=0.119  Sum_probs=168.1

Q ss_pred             cccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE--e-----EEeeCCCcEEEEEEeeCCCC--EEEEEecCCeEEE
Q 005956          308 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--L-----NVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVRI  376 (667)
Q Consensus       308 h~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~--~-----~~~~h~~~V~~l~f~p~d~~--~l~sgs~Dg~v~i  376 (667)
                      -...|.+++|+|..  +++.|..+|.|.+||+..+..  .     ....|..+++.+.|.. +..  -|++++.||.|..
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEee
Confidence            35689999999976  888999999999999987654  1     2224899999999987 433  4999999999999


Q ss_pred             EecCCCeE------EEec-------ccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCccee-eeEeeccccCcCCC
Q 005956          377 WGVCEKRV------VDWA-------DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGN  441 (667)
Q Consensus       377 wdl~~~~~------~~~~-------~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~-~~~~~~~~~~~~~~  441 (667)
                      |+++.-..      ....       .....+++++|.+ +-+.+++|+..|.|.--+..+..... .....+.....|.+
T Consensus       320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            98765321      1111       1234588999988 56789999999998874444333332 12233334556789


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCc-c
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCF-P  518 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~~-~  518 (667)
                      +|+.+.++|-+...+++++ |-+++||... .....+....+...+++++|||... .++++..||.|.|||+..... +
T Consensus       400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P  478 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP  478 (555)
T ss_pred             ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence            9999999998755555555 9999999865 3333333334667799999999875 566777899999999865433 2


Q ss_pred             ccc--cccCccceeEEccCCcEEEEecCC
Q 005956          519 SSK--QKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       519 ~~~--~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ...  ........+.|+++|+.||++-..
T Consensus       479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~  507 (555)
T KOG1587|consen  479 VLSQKVCSPALTRVRWSPNGKLLAVGDAN  507 (555)
T ss_pred             cccccccccccceeecCCCCcEEEEecCC
Confidence            221  124555667788889999996443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1e-13  Score=152.29  Aligned_cols=255  Identities=20%  Similarity=0.308  Sum_probs=177.4

Q ss_pred             cccEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          222 KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       222 ~~~I~~v~fsp--dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      ...|+.|.+-.  |..+|++|+.||.||||+-.....               +..++..           .        .
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---------------~~~eLVT-----------a--------w 1154 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---------------KKPELVT-----------A--------W 1154 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEeccccccc---------------CCceeEE-----------e--------e
Confidence            34688888865  456999999999999997542100               0000000           0        0


Q ss_pred             Cccee-eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956          300 SPLQE-LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (667)
Q Consensus       300 ~~~~~-l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~  375 (667)
                      ..+.. +.+-.+.=.-+.|.... +|+++|.-..|+|||+.+..+...+.  ...-|+++.-+...++.|+.|..||.|+
T Consensus      1155 ~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvR 1234 (1387)
T KOG1517|consen 1155 SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVR 1234 (1387)
T ss_pred             ccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceE
Confidence            00000 11111111335676544 88888878999999999888888775  5557888877765789999999999999


Q ss_pred             EEecCCCe----EEEecccCCc--eEEEEEeeCCCE-EEEEecCCcEEEEEecCCccee-eeEeeccccCcCCCCeEEEE
Q 005956          376 IWGVCEKR----VVDWADVRDV--ISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       376 iwdl~~~~----~~~~~~~~~~--v~~v~~spdg~~-l~~gs~dg~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~I~~l~  447 (667)
                      +||.+...    +..+..|...  |..+.+.+.|-. |++|+.+|.|++||++...... ..+..+..   -++..+++.
T Consensus      1235 vyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~---yGs~lTal~ 1311 (1387)
T KOG1517|consen 1235 VYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE---YGSALTALT 1311 (1387)
T ss_pred             EeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc---cCccceeee
Confidence            99987643    3346667666  999999997755 9999999999999999852211 12222111   123589999


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECC-cceeeEE------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          448 FSRDESQRIMITSEDSKLRILDGV-DVIHKFK------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      .++. ...+++|+. +.|+||++. +.+..++      +. ..+.+.+++|+|---+||+|+.|.+|.||....+.
T Consensus      1312 VH~h-apiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q-~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1312 VHEH-APIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQ-RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eccC-CCeeeecCc-ceEEEEecChhhhcccccCcccccC-cCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            9998 478888888 999999965 2222222      22 34567999999999999999999999999987654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=6.8e-13  Score=124.11  Aligned_cols=241  Identities=20%  Similarity=0.298  Sum_probs=163.2

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      ++|.++|+.|+|..  .+|++|+. |.|+=|...+.....               +.                ...|.. 
T Consensus        59 qahdgpiy~~~f~d--~~Lls~gd-G~V~gw~W~E~~es~---------------~~----------------K~lwe~-  103 (325)
T KOG0649|consen   59 QAHDGPIYYLAFHD--DFLLSGGD-GLVYGWEWNEEEESL---------------AT----------------KRLWEV-  103 (325)
T ss_pred             cccCCCeeeeeeeh--hheeeccC-ceEEEeeehhhhhhc---------------cc----------------hhhhhh-
Confidence            79999999999994  47888775 999999887532110               00                000000 


Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      ..|.++-.-.--.|+++...|.. -++.++.|+.++-||+++|+..+.+. |+++|.++.-.. ....+++|+.||++|+
T Consensus       104 ~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRv  182 (325)
T KOG0649|consen  104 KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRV  182 (325)
T ss_pred             cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEE
Confidence            01111101122468888888766 67777799999999999999999996 999999999855 5668999999999999


Q ss_pred             EecCCCeEEEeccc-----------CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          377 WGVCEKRVVDWADV-----------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       377 wdl~~~~~~~~~~~-----------~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      ||+++++.+.....           ...|.+++.  +..++++|+ ...+.+|.++....... +.+.       .++..
T Consensus       183 Wd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~v-fpip-------a~v~~  251 (325)
T KOG0649|consen  183 WDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCV-FPIP-------ARVHL  251 (325)
T ss_pred             EeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEE-Eecc-------cceeE
Confidence            99999987754322           123555554  455777765 45899999998766432 3332       56788


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW  510 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~Dg~I~iW  510 (667)
                      +.|..+   .+++++..+.|.-|.+.-..+..... ......+..|+.. -++|-.++....+.|+
T Consensus       252 v~F~~d---~vl~~G~g~~v~~~~l~Gvl~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  252 VDFVDD---CVLIGGEGNHVQSYTLNGVLQANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             eeeecc---eEEEeccccceeeeeeccEEEEeccC-CccceeeecccCCceEEEEecccceeeeee
Confidence            888765   78888888899999876544433322 2233444444322 2556566666666665

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=3.1e-14  Score=147.52  Aligned_cols=219  Identities=20%  Similarity=0.243  Sum_probs=156.4

Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      .+...-++.+|.++|.|+++++++.++++||.||+|+.|++... ..     ++.                         
T Consensus       333 ~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n-~d-----p~d-------------------------  381 (577)
T KOG0642|consen  333 DVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPN-QD-----PDD-------------------------  381 (577)
T ss_pred             ceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCC-CC-----ccc-------------------------
Confidence            34455688999999999999999999999999999999987621 00     000                         


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~  366 (667)
                         .++ .......+.||++.|+.+++|+.. .|++|+.||+|++|+.....+ .+|+   .......+.|-.......+
T Consensus       382 ---s~d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~  456 (577)
T KOG0642|consen  382 ---SYD-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSL  456 (577)
T ss_pred             ---ccC-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhh
Confidence               000 112356788999999999999887 999999999999999887666 4553   3345566666541212223


Q ss_pred             EEecCCeEEEEecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956          367 SGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~  438 (667)
                      +...-+.--++++.....+.+..        ....+.-+.++|.+...+++..++.|+++|..++.....       ...
T Consensus       457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s-------~~a  529 (577)
T KOG0642|consen  457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS-------MVA  529 (577)
T ss_pred             hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh-------eee
Confidence            22222333333443333222221        124477888999999999999999999999998877543       233


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV  473 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~  473 (667)
                      |...++++++.|+| -+|++++.|+.+++|.+...
T Consensus       530 ~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  530 HKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccceecceeecCCC-ceEEeecCCceeehhhccch
Confidence            44789999999996 79999999999999987543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.9e-13  Score=148.91  Aligned_cols=203  Identities=15%  Similarity=0.146  Sum_probs=139.9

Q ss_pred             CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---CeEEEEecCCCeEEEecccCCceEEEEEeeCCCE
Q 005956          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG  405 (667)
Q Consensus       329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~  405 (667)
                      +..|.+||...........+...+...+|+| +++.|+.++.+   ..|++||+.+++...+....+....++|+|||+.
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            4789999998766554456788899999999 99999887754   3699999998875544444445567899999999


Q ss_pred             EEEEe-cCCcEEEE--EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeC
Q 005956          406 FIVGS-ITGTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGL  480 (667)
Q Consensus       406 l~~gs-~dg~i~l~--d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~  480 (667)
                      |+++. .+|.+.||  |+.++..  ..+.  .    +...+....|+|||..+++++..++...||++.  ........ 
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~--~~lt--~----~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~-  332 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTP--SQLT--S----GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG-  332 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCe--Eeec--c----CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec-
Confidence            88865 68876666  4444332  1221  1    124578899999985555566677888888753  22122112 


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956          481 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       481 ~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                       +..  ....|+|||++|+.++.++ +.+||+.++........ .......|+|||..++.+....
T Consensus       333 -~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g  393 (429)
T PRK01742        333 -GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQG  393 (429)
T ss_pred             -CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCC
Confidence             222  3578999999999888765 66699988765332211 1223468999999999987643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.57  E-value=1.2e-13  Score=132.18  Aligned_cols=220  Identities=18%  Similarity=0.283  Sum_probs=163.2

Q ss_pred             cccceeec-cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          212 LYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       212 ~~~~~~l~-~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      +.+...|. .|-+.|.|+.|.|++..||+-. |..|.+|++.+......                               
T Consensus       112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~va-------------------------------  159 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVA-------------------------------  159 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhe-------------------------------
Confidence            33444444 5677999999999999998876 78899999986322100                               


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecC--CCeEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~--~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~  366 (667)
                              .-+...-.+|....++-+|+|  ++.-+....|++++.||+++.++...+.  |...|..+.|+|+...+|+
T Consensus       160 --------ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lv  231 (370)
T KOG1007|consen  160 --------EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILV  231 (370)
T ss_pred             --------eecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEE
Confidence                    000111123667788889998  4455556678999999999988887775  8899999999997778899


Q ss_pred             EEecCCeEEEEecCCCe--EEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceee---------------
Q 005956          367 SGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE---------------  428 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~--~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~---------------  428 (667)
                      +|+.||.|+|||.+.-+  +....+|...|.++.|+|. .++|++|+.|..+.+|....-.....               
T Consensus       232 t~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~ds  311 (370)
T KOG1007|consen  232 TCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDS  311 (370)
T ss_pred             EcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhh
Confidence            99999999999998754  4457889999999999994 56788899999999997643211000               


Q ss_pred             --e-Eeecc----ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956          429 --K-VDFHD----RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       429 --~-~~~~~----~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~  471 (667)
                        . -.+..    ....|...|.+++|+.-++-.+++-+.||++.|=.+.
T Consensus       312 eer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  312 EERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             HHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence              0 00111    2345678999999998888889999999999886654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.7e-12  Score=141.20  Aligned_cols=203  Identities=14%  Similarity=0.178  Sum_probs=138.4

Q ss_pred             eeeeccccceEEEEecCCC-eEEEEe---CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE-ecCC--eEE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDG--KVR  375 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s---~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg-s~Dg--~v~  375 (667)
                      ..+..+...+...+|+||| .|+..+   .+..|.+|++.+++..........+..+.|+| |++.|+.. +.++  .|+
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEE
Confidence            3445566789999999999 666543   24579999999887655554445566789999 88877755 4444  599


Q ss_pred             EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-CcEEEE--EecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       376 iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g~i~l~--d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      +||+.+++...+......+...+|+|||+.|+..+.+ |...+|  |+.++..  ..+...      ........|+|+|
T Consensus       271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~~------~~~~~~~~~SpDG  342 (429)
T PRK03629        271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITWE------GSQNQDADVSSDG  342 (429)
T ss_pred             EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeecC------CCCccCEEECCCC
Confidence            9999999888777666678899999999999877754 455555  5544432  222221      1345678999997


Q ss_pred             CeEEEEEeCC--CcEEEEECCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCCCCc
Q 005956          453 SQRIMITSED--SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR---VYVWNYDELCF  517 (667)
Q Consensus       453 ~~~l~~~s~d--g~I~iwd~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~---I~iWd~~~~~~  517 (667)
                      ..+++++..+  ..|++||+.... ..+..   ........|+|||++|+.++.++.   +++++++....
T Consensus       343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~  410 (429)
T PRK03629        343 KFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  410 (429)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence            4444444433  358888976432 22221   122346789999999999988764   77888865543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.56  E-value=6.2e-14  Score=146.20  Aligned_cols=207  Identities=18%  Similarity=0.286  Sum_probs=153.8

Q ss_pred             ccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          221 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       221 H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      ....|+.+.|.| |...||.|++||.|++|.+......                                      ....
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------------------------------------e~~~  667 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------------------------------------ENEM  667 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------------------------------------cccC
Confidence            456799999999 6779999999999999999863221                                      1124


Q ss_pred             CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      .+-..+.+|...|++|.|+|=.  .|+++++|.+|++||+.+++....+ +|.+.|..++|+| +|+.+++.+.||+|++
T Consensus       668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence            5677889999999999999954  8999999999999999998766555 6999999999999 9999999999999999


Q ss_pred             EecCCCeEEEec---ccCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEE
Q 005956          377 WGVCEKRVVDWA---DVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       377 wdl~~~~~~~~~---~~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~  448 (667)
                      |..+.+..-...   .....-..+.|--||+++++.+.|    ..|.+||..+-..... ...+...     ..+.--.+
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva-----ps~LvP~Y  821 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA-----PSPLVPHY  821 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-----Cccccccc
Confidence            998876532111   112233456788899999887765    4688888876543221 1111110     11222234


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECC
Q 005956          449 SRDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~  471 (667)
                      .+|.+.++++|-.|..|.+|.+-
T Consensus       822 D~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  822 DYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             cCCCceEEEecCCCceEEEEEec
Confidence            56655678888889999999854

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=8.3e-13  Score=143.80  Aligned_cols=275  Identities=16%  Similarity=0.158  Sum_probs=191.6

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +-...-..-.||+|+++|+.... ..|+||.+.++                                             
T Consensus        14 g~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg---------------------------------------------   47 (792)
T KOG1963|consen   14 GRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATG---------------------------------------------   47 (792)
T ss_pred             cccceecccccccCCcEEEEeeC-CEEEEEecchH---------------------------------------------
Confidence            33333445679999998887765 47999999874                                             


Q ss_pred             CcceeeeccccceEEEEecCCC----eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC--CCCEEE-EEecCC
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN----YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDNYFI-SGSIDG  372 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~----~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~--d~~~l~-sgs~Dg  372 (667)
                      ..+..+.+|..+++.+.+.|..    ++++++.||+|++||...+..++++....++..+.+.|.  +...++ .+..|.
T Consensus        48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~  127 (792)
T KOG1963|consen   48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY  127 (792)
T ss_pred             hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence            3466788999999999997654    677999999999999999999999987777766666431  111222 222121


Q ss_pred             e------------EEEEecCCCeE--EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956          373 K------------VRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (667)
Q Consensus       373 ~------------v~iwdl~~~~~--~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~  438 (667)
                      .            ++-+.+.+...  ..+........++.+++.|.+.++.. +-.+.+|......   ...........
T Consensus       128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~---~~~~~~~~~~~  203 (792)
T KOG1963|consen  128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH-MCKIHIYFVPKHT---KHTSSRDITVH  203 (792)
T ss_pred             eeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE-eeeEEEEEecccc---eeeccchhhhh
Confidence            1            11111111100  01111111256778888887666554 4478888887654   11112222334


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      |...+++.+++|.+ .+++++..||+|.+|.-..    -...-..+-|...|++++|+++|.+|++||..|.+.+|.+.+
T Consensus       204 Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  204 HTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            55668999999996 8999999999999996321    111112234888999999999999999999999999999999


Q ss_pred             CCccccccccCccceeEEccCCcEEEEecCC
Q 005956          515 LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       515 ~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ++.........++..+.++||+...++.-.+
T Consensus       283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             CCcccccccCCeeEEEEEcCCCCeEEEEecC
Confidence            9977777888888889999999988876543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.55  E-value=3e-12  Score=124.62  Aligned_cols=299  Identities=14%  Similarity=0.141  Sum_probs=188.8

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCceee----------eeeCCCCC--ccccCCCCeEEecccCCCCceeecCCCc
Q 005956          227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASC----------KSFTDDGG--FGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      -++|||+|+|+|+++.- .+.|-|..+.+...          +.+..+.-  +....+++++..+.....          
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp----------   81 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP----------   81 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc----------
Confidence            46899999999999876 67788887754322          22222221  111222333333222111          


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC-
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-  371 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D-  371 (667)
                           .-...+..-.+.+.+++|+|+|  .|.+...|-.|.+|.+.+.++...--....+..++|+| ++++.+.++.. 
T Consensus        82 -----ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrD  155 (447)
T KOG4497|consen   82 -----EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRD  155 (447)
T ss_pred             -----eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeeccc
Confidence                 1123445566789999999999  67788899999999999888766555555678999999 99888776542 


Q ss_pred             -----------------------------------CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEE
Q 005956          372 -----------------------------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH  416 (667)
Q Consensus       372 -----------------------------------g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~  416 (667)
                                                         ..+.+||-.-.-.+......-.+..++|+|.++++++|+.|+.++
T Consensus       156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lr  235 (447)
T KOG4497|consen  156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLR  235 (447)
T ss_pred             HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhh
Confidence                                               123333322111111122234588899999999999999999887


Q ss_pred             EEEecCCcc--------------------------------------------------eee----eEeeccc-----cC
Q 005956          417 FYKASGNDL--------------------------------------------------KLE----KVDFHDR-----KK  437 (667)
Q Consensus       417 l~d~~~~~~--------------------------------------------------~~~----~~~~~~~-----~~  437 (667)
                      +.+--+-+.                                                  ..+    ...++..     ..
T Consensus       236 vlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p  315 (447)
T KOG4497|consen  236 VLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP  315 (447)
T ss_pred             hhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCC
Confidence            754311000                                                  000    0001100     01


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          438 TSGNKITGIQFSRDESQRIMITSE--DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      .....+.-++|++|. .++++-..  -+.+.+||+++...-. ......+|....|+|....|+.+.....+|+|.....
T Consensus       316 nPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~a-vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  316 NPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLHA-VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             CcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhhh-hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence            112346679999994 55555432  3579999987543211 1124678999999999988888877788999998886


Q ss_pred             CccccccccCccceeEEccCCcEEEEecC
Q 005956          516 CFPSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       516 ~~~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ...........+..+.|+-+|..+++...
T Consensus       394 ~~V~vP~~GF~i~~l~W~~~g~~i~l~~k  422 (447)
T KOG4497|consen  394 RVVGVPKKGFNIQKLQWLQPGEFIVLCGK  422 (447)
T ss_pred             eEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence            55544455566777788888888877544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=1e-12  Score=130.86  Aligned_cols=223  Identities=13%  Similarity=0.086  Sum_probs=170.2

Q ss_pred             eeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe----EeEEeeCCCcEEEEEEeeCCCCEEEEEecC--CeEEEE
Q 005956          304 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSID--GKVRIW  377 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D--g~v~iw  377 (667)
                      .....+++|..++.. ++.|++|-.+|.+.+|....+.    .+..+.....+..+.-++....++++|+..  ..+.||
T Consensus       100 ~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             ccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeee
Confidence            334556677777754 5689999999999999988432    344445556777777788677788889988  889999


Q ss_pred             ecCCCeEEEe--------cc--cCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          378 GVCEKRVVDW--------AD--VRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       378 dl~~~~~~~~--------~~--~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      |+.+.+.+..        .+  ..-.++.+.|-+.  ...|++++.-+.+++||.+....+..++.+..      .+|++
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E------~~is~  252 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE------NPISS  252 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc------Cccee
Confidence            9998754421        11  1234788889887  88999999999999999998887777776654      78999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  524 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~  524 (667)
                      +...|++ ++|+++..-+.+..||++.....-. ..+-.+.+.++..+|.+++|+++|-|..|+|+|+++.+.......+
T Consensus       253 ~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK  331 (412)
T KOG3881|consen  253 TGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK  331 (412)
T ss_pred             eeecCCC-cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh
Confidence            9999996 8999999999999999986543322 2236789999999999999999999999999999996554444444


Q ss_pred             CccceeEEcc
Q 005956          525 SVRSCEHFFS  534 (667)
Q Consensus       525 ~~~~~~~fs~  534 (667)
                      ...+++.+.+
T Consensus       332 s~lt~il~~~  341 (412)
T KOG3881|consen  332 SRLTFILLRD  341 (412)
T ss_pred             ccccEEEecC
Confidence            4444544443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.7e-13  Score=137.96  Aligned_cols=197  Identities=17%  Similarity=0.207  Sum_probs=151.0

Q ss_pred             EEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-
Q 005956          313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-  389 (667)
Q Consensus       313 ~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-  389 (667)
                      ..++|+.+| .|++++.||++|||+......+... .|...|.++.|+| |+++|++-+.| ..+||+++++..+.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            788999998 9999999999999998776655544 5999999999999 99999999999 89999999996554332 


Q ss_pred             --cCCceEEEEEeeCC---C--EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          390 --VRDVISAICYIPDG---K--GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       390 --~~~~v~~v~~spdg---~--~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                        .......+.|+.|+   .  .++.....+.|+.||+...... ....... .......|++++.+++| ++++.|+.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~-~~~~~~siSsl~VS~dG-kf~AlGT~d  302 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRK-KIKRFKSISSLAVSDDG-KFLALGTMD  302 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhh-hhhccCcceeEEEcCCC-cEEEEeccC
Confidence              34456677788776   2  3333445567777777644331 1111110 11123579999999996 999999999


Q ss_pred             CcEEEEECCcceee-EEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          463 SKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       463 g~I~iwd~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      |.|.|++..++... +....|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999998865443 33345889999999999999999999999999988765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.53  E-value=6.8e-13  Score=136.73  Aligned_cols=191  Identities=18%  Similarity=0.255  Sum_probs=149.9

Q ss_pred             CCC-eEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-----------
Q 005956          319 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----------  381 (667)
Q Consensus       319 ~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-----------  381 (667)
                      +.+ -|+.|-.-|.|.+.|....+..+.+.     ....|+|+.|-|.+...|+.+-.+|.+++||..-           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            455 67778788889998877654444443     4578999999998888999999999999997531           


Q ss_pred             ---Ce---------------EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956          382 ---KR---------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       382 ---~~---------------~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                         +.               +..|.-..+.|+.++|+|||++||+.+.||.++|||..+.++...       .+.--+..
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-------mkSYFGGL  335 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV-------MKSYFGGL  335 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH-------HHhhccce
Confidence               00               112223345789999999999999999999999999987665432       11123678


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCC-----------------------------
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----------------------------  494 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spd-----------------------------  494 (667)
                      .|++|+||| ++|++|++|.-|.||...+.....++++|...|..++|.|-                             
T Consensus       336 LCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~  414 (636)
T KOG2394|consen  336 LCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN  414 (636)
T ss_pred             EEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence            999999996 99999999999999999988888888899999999999830                             


Q ss_pred             ------C-------------CEEEEEeCCCcEEEEEcCCCCc
Q 005956          495 ------G-------------KHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       495 ------g-------------~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                            +             -.|.+.+.|-.+.+||+.....
T Consensus       415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             CCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence                  1             1367788999999999976543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.52  E-value=2.7e-13  Score=128.32  Aligned_cols=244  Identities=15%  Similarity=0.186  Sum_probs=177.2

Q ss_pred             CCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      ..|...+++|.+.|+++.|-.+++|++|..-|.|++|++.+...+..+.  +...|+.++-.| + ..+.+-+.|+.+.+
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CCCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEE
Confidence            3567788899999999999999999999999999999999988877775  777999999998 4 67888889999999


Q ss_pred             EecCCCeEEEec------------------------------------------------------ccCCceEEEEEee-
Q 005956          377 WGVCEKRVVDWA------------------------------------------------------DVRDVISAICYIP-  401 (667)
Q Consensus       377 wdl~~~~~~~~~------------------------------------------------------~~~~~v~~v~~sp-  401 (667)
                      |++..+..+...                                                      ...+.+.+..+.- 
T Consensus        82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            998653211000                                                      0012244444322 


Q ss_pred             CCC--EEEEEecCCcEEEEEecCCcceee---eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--
Q 005956          402 DGK--GFIVGSITGTCHFYKASGNDLKLE---KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--  474 (667)
Q Consensus       402 dg~--~l~~gs~dg~i~l~d~~~~~~~~~---~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--  474 (667)
                      ++.  .+++|..+|.+.+||+.++.....   ..........|..+|.++.|.+. ...=++++.+..+..|++....  
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~gs  240 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHSTGS  240 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeeccccCc
Confidence            233  456788999999999998743322   11222234457789999999875 2455777888889999866321  


Q ss_pred             ---eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-ccccCccceeEEccCCcEEEEecCCC
Q 005956          475 ---HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       475 ---~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                         ..+... ..-.|..+.+-||++.+||++.|+.|+||+..+...... ..+.....+++|+||..++|.+..+.
T Consensus       241 lq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  241 LQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA  315 (323)
T ss_pred             ccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence               111111 234567788899999999999999999999999876543 33446777889999988888876554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.7e-12  Score=140.08  Aligned_cols=203  Identities=17%  Similarity=0.216  Sum_probs=138.9

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCC--eE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG--KV  374 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg--~v  374 (667)
                      ...+..|...+.+.+|+|++ .|+..+.+   ..|.+||+.+++............+.+|+| +++.|+ +.+.++  .|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceE
Confidence            34455677789999999999 77766643   469999999887765555555566889999 887665 445555  59


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CCc--EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg~--i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      ++||+.+++...+..+......++|+|||+.|+..+. +|.  |.++++.++...  .+...+      .....++|+|+
T Consensus       275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt~~g------~~~~~~~~SpD  346 (433)
T PRK04922        275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RLTFQG------NYNARASVSPD  346 (433)
T ss_pred             EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--EeecCC------CCccCEEECCC
Confidence            9999999988777666666678899999999988764 455  555565554432  222222      33456899999


Q ss_pred             CCeEEEEEe-CCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCC
Q 005956          452 ESQRIMITS-EDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELC  516 (667)
Q Consensus       452 g~~~l~~~s-~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~~  516 (667)
                      | ++|+..+ .++  .|.+||+.........  +........|+|||++|+..+.+   +.|++++++...
T Consensus       347 G-~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        347 G-KKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             C-CEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            7 4555443 333  6899997643322111  22244567999999998877653   468888886543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=1.3e-11  Score=120.03  Aligned_cols=276  Identities=12%  Similarity=0.238  Sum_probs=179.0

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      ..+++|+.|...++.|.++| .+||+++-....                                           ....
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-------------------------------------------~~r~   43 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-------------------------------------------ASRQ   43 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhh-------------------------------------------hhhc
Confidence            44599999999999998888 899998741100                                           0000


Q ss_pred             eeccccceEEEEecCCC-eEEEEeCC------CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s~D------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      +..-.-.+.-+-|- .+ ..+.||.+      ..|.|||=...+++..+....+|.++.+.+   +.|++. ..+.|++|
T Consensus        44 ~~~~G~~~veMLfR-~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvv-l~~~I~Vy  118 (346)
T KOG2111|consen   44 FIDGGFKIVEMLFR-SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVV-LENKIYVY  118 (346)
T ss_pred             cccCchhhhhHhhh-hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEE-ecCeEEEE
Confidence            00000112222222 23 33344433      479999988888999999999999999976   344444 46889999


Q ss_pred             ecCC-CeEEEe---cccCCceEEEEEeeCCCEEEE-EecCCcEEEEEecCCcce-eeeEeeccccCcCCCCeEEEEEccC
Q 005956          378 GVCE-KRVVDW---ADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       378 dl~~-~~~~~~---~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      ...+ -+.+..   ......+.+++-+.+...||. |-.-|.|.|-|+...... ...+      .+|...|.+++.+.+
T Consensus       119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I------~AH~s~Iacv~Ln~~  192 (346)
T KOG2111|consen  119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII------NAHDSDIACVALNLQ  192 (346)
T ss_pred             EcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE------EcccCceeEEEEcCC
Confidence            8874 333322   221222444443334344554 556799999999876652 2222      345689999999999


Q ss_pred             CCeEEEEEeCCCc-EEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc--------
Q 005956          452 ESQRIMITSEDSK-LRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--------  520 (667)
Q Consensus       452 g~~~l~~~s~dg~-I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~--------  520 (667)
                      | ..++++|..|+ |||||..+.  ++.++.-.....|.+++|||+..+||++|+-|+|+|+.+........        
T Consensus       193 G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~  271 (346)
T KOG2111|consen  193 G-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFK  271 (346)
T ss_pred             c-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccc
Confidence            6 89999999996 899998754  44444333567799999999999999999999999999877432111        


Q ss_pred             -----ccccCccceeEEc-cCCcEEEEecCCCCcccccccCC
Q 005956          521 -----KQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSS  556 (667)
Q Consensus       521 -----~~~~~~~~~~~fs-~dg~~lav~w~~~~~~~~~~~~~  556 (667)
                           +.....++...|+ |.|...+++|......+.++..+
T Consensus       272 ~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~D  313 (346)
T KOG2111|consen  272 RLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICAD  313 (346)
T ss_pred             ccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeC
Confidence                 1112234445554 45677777887776554444443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=8e-12  Score=136.55  Aligned_cols=203  Identities=15%  Similarity=0.184  Sum_probs=142.9

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeC---CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCCe--E
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGK--V  374 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~---Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg~--v  374 (667)
                      ...+..|...+...+|+||| .|+..+.   +..|.+||+.+++......+...+...+|+| +++.|+ +.+.++.  |
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~I  272 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceE
Confidence            45566788899999999999 7776653   4689999999988766555677788999999 887765 5555554  8


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CC--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      ++||+.++....+..+.......+|+|||+.|+..+. +|  .|.++|+.+....  .+...      ...+....|+|+
T Consensus       273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--~lt~~------~~~~~~~~~Spd  344 (435)
T PRK05137        273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--RISFG------GGRYSTPVWSPR  344 (435)
T ss_pred             EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--EeecC------CCcccCeEECCC
Confidence            8889999888877777777788999999999988764 33  5777787655432  22211      244667889999


Q ss_pred             CCeEEEEEeC-C--CcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCCc
Q 005956          452 ESQRIMITSE-D--SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDD------CRVYVWNYDELCF  517 (667)
Q Consensus       452 g~~~l~~~s~-d--g~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D------g~I~iWd~~~~~~  517 (667)
                      | +.|+..+. .  ..|.+||+... ...+.   ....+....|+|||++|+..+.+      ..++++++.++..
T Consensus       345 G-~~ia~~~~~~~~~~i~~~d~~~~~~~~lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        345 G-DLIAFTKQGGGQFSIGVMKPDGSGERILT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             C-CEEEEEEcCCCceEEEEEECCCCceEecc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            7 55555443 2  36888886532 22222   22346778999999998876543      2578888876543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.51  E-value=6.4e-14  Score=141.87  Aligned_cols=228  Identities=12%  Similarity=0.109  Sum_probs=185.3

Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV  390 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~  390 (667)
                      -..+.++.+| +|+.|+..|.|-.+|..+++....+.....|..+.|.. +.++|+++ ....++|||-..-++ .....
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~GtEl-HClk~  208 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDNNGTEL-HCLKR  208 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecCCCcEE-eehhh
Confidence            4568889999 99999999999999999999999998888999999998 77777776 467899999655444 44445


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956          391 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  470 (667)
Q Consensus       391 ~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~  470 (667)
                      ...|..+.|-|.--+|++++..|.++.-|+..+++...       ..+..+.+..+.-+|-+ ..+-+|...|+|.+|..
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~-------~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS-------IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSP  280 (545)
T ss_pred             cCchhhhcccchhheeeecccCCceEEEeechhhhhHH-------HHccCCccchhhcCCcc-ceEEEcCCCceEEecCC
Confidence            56789999999988899999999999999999887643       22234778888889975 68888999999999997


Q ss_pred             CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCCccc
Q 005956          471 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ  550 (667)
Q Consensus       471 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~  550 (667)
                      .......+...|.++|.++++.++|.|+||+|.|..|+|||+.....+.........+.+.||.. ..||++|.+.....
T Consensus       281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqk-glLA~~~G~~v~iw  359 (545)
T KOG1272|consen  281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQK-GLLALSYGDHVQIW  359 (545)
T ss_pred             CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccc-cceeeecCCeeeee
Confidence            75544455556999999999999999999999999999999998876666555666677778764 46888877665443


Q ss_pred             c
Q 005956          551 K  551 (667)
Q Consensus       551 ~  551 (667)
                      +
T Consensus       360 ~  360 (545)
T KOG1272|consen  360 K  360 (545)
T ss_pred             h
Confidence            3

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.51  E-value=2e-12  Score=125.74  Aligned_cols=234  Identities=15%  Similarity=0.205  Sum_probs=177.0

Q ss_pred             eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe---EeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~---~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      .+.--..+|+|.+|++|+ .++.+.....|.||.....+   ...++. |...|+++.|+| ..+.|++++.|..-++|.
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence            344446789999999999 89999999999999987665   445554 999999999999 889999999999999999


Q ss_pred             cC-CCe---EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          379 VC-EKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       379 l~-~~~---~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      .. .++   ...+..+....+++.|+|.++.|++|+....|.+|-++...--..   -...++.....|+++.|+|++ -
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV---sKhikkPirStv~sldWhpnn-V  159 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV---SKHIKKPIRSTVTSLDWHPNN-V  159 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh---hhhhCCccccceeeeeccCCc-c
Confidence            84 433   334677889999999999999999999999999988764332100   011133445789999999995 8


Q ss_pred             EEEEEeCCCcEEEEECC-----c---------------ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          455 RIMITSEDSKLRILDGV-----D---------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~-----~---------------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      ++++|+.|+..+|+...     +               +...+.  ...+.+..+.|+|+|..|+-.+.|+.|.+=|...
T Consensus       160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            89999999999999631     0               011111  3567899999999999999999999999999887


Q ss_pred             CCc--cccccccCccceeEEccCCcEEEEecC
Q 005956          515 LCF--PSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       515 ~~~--~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      +..  ........+...+.|-.+...++++.+
T Consensus       238 p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  238 PSERVQSVATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             CchhccchhhccCCceeeEeecCCceeecCCC
Confidence            752  222222234444566666666666544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=8.2e-12  Score=135.95  Aligned_cols=201  Identities=17%  Similarity=0.202  Sum_probs=133.4

Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCCeEEEE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIW  377 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg~v~iw  377 (667)
                      ..+..+...+.+.+|+|+| .|+..+.+   ..|.+||+.+++..........+.+.+|+| |++.|+ +.+.++...||
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceEE
Confidence            4445677789999999999 77766543   359999999988765554556677899999 888776 45677765555


Q ss_pred             --ecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          378 --GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       378 --dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                        |+.++....+..+........|+|||+.|+..+. +|...+|.+.........+...+      .......|+|+| +
T Consensus       268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g------~~~~~~~~SpDG-~  340 (427)
T PRK02889        268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG------SYNTSPRISPDG-K  340 (427)
T ss_pred             EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC------CCcCceEECCCC-C
Confidence              5666666666555556677899999999887654 46677776643222222222222      233467899997 5


Q ss_pred             EEEEEeCCC---cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcC
Q 005956          455 RIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD  513 (667)
Q Consensus       455 ~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---~I~iWd~~  513 (667)
                      +|+..+.++   .|.+||+.....+...  .........|+|||++|+.++.++   .+++.++.
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence            666555443   6999997643322211  222346789999999998887654   35555553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.9e-12  Score=138.36  Aligned_cols=219  Identities=14%  Similarity=0.070  Sum_probs=148.2

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      +.+..+.+.+.+.+|||||+.||..+.   +..|.+|++.++...                                   
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-----------------------------------  236 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------------------------------  236 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence            455567788999999999999987642   356888888753221                                   


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEE-EeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLS-CSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s-~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                              .+..+.+|   +..+.|+||| .|+. .+.++  .|.+||+.+++..+...+...+....|+| +++.|+..
T Consensus       237 --------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~  304 (429)
T PRK03629        237 --------QVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYT  304 (429)
T ss_pred             --------EccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEE
Confidence                    11222233   4467999999 5654 34455  58899999888776666666788999999 99988777


Q ss_pred             ecC-C--eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC---CcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~D-g--~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d---g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +.+ +  .|+++|+.++....+..........+|+|||++|+..+.+   ..|.+||+.++....  +.  ..     ..
T Consensus       305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~--Lt--~~-----~~  375 (429)
T PRK03629        305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--LT--DT-----FL  375 (429)
T ss_pred             eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE--eC--CC-----CC
Confidence            754 3  4566678777666554444556778999999999886643   357888987765432  11  11     12


Q ss_pred             eEEEEEccCCCeEEEEEeCCCc---EEEEECCc-ceeeEEeCCCCCCeEEEEEcC
Q 005956          443 ITGIQFSRDESQRIMITSEDSK---LRILDGVD-VIHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~---I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp  493 (667)
                      .....|+||| ..|+.++.++.   +.++++.. ....+..  +.+.+...+|+|
T Consensus       376 ~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~--~~~~~~~p~Wsp  427 (429)
T PRK03629        376 DETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLPA--TDGQVKFPAWSP  427 (429)
T ss_pred             CCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECcc--CCCCcCCcccCC
Confidence            3467899997 66666666653   67777642 3333433  566778888887

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.49  E-value=6.2e-12  Score=124.61  Aligned_cols=234  Identities=16%  Similarity=0.175  Sum_probs=156.1

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      ..+|.++.++.+  .|+.+=++. |.|||+.+.....                                          .
T Consensus        87 pt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLh------------------------------------------T  121 (391)
T KOG2110|consen   87 PTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLH------------------------------------------T  121 (391)
T ss_pred             CCceEEEEEccc--eEEEEEccc-EEEEecccceeeh------------------------------------------h
Confidence            457999999855  677776665 9999998743210                                          1


Q ss_pred             ceeeeccccceEEEEecCCC-eEEE--EeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe-EEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLS--CSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK-VRI  376 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s--~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~-v~i  376 (667)
                      +.+...|...+.++++++.+ +|+-  ....|.|.|||+.+-+.+..+. |.+.+.|++|++ +|.+|++++..|+ ||+
T Consensus       122 I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRV  200 (391)
T KOG2110|consen  122 IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRV  200 (391)
T ss_pred             hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEE
Confidence            22222455667777777776 6663  3346899999999999988886 999999999999 9999999999998 799


Q ss_pred             EecCCCeEEEecc---cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC--eEEEEEccC
Q 005956          377 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK--ITGIQFSRD  451 (667)
Q Consensus       377 wdl~~~~~~~~~~---~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~--I~~l~~sp~  451 (667)
                      +.+.+++.+....   ....|.+++|+|++++|++.+..++|++|.+.........  -..........  ...+.+.|.
T Consensus       201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~--~p~~~~~~~~~~sk~~~sylps  278 (391)
T KOG2110|consen  201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPE--SPTAGTSWFGKVSKAATSYLPS  278 (391)
T ss_pred             EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCC--CCCCCCcccchhhhhhhhhcch
Confidence            9999988764222   2345899999999999999999999999999765422110  00000000000  000011111


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                                 +.-.+||..+.....+..... ..+..+.-.+...++..++.||.++.|.++-
T Consensus       279 -----------~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  279 -----------QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             -----------hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence                       122336655544444442111 1233333235788999999999999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=5e-12  Score=137.64  Aligned_cols=209  Identities=15%  Similarity=0.164  Sum_probs=141.0

Q ss_pred             CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE
Q 005956          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF  406 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l  406 (667)
                      ..|.++|...........+...+.+.+|+| +++.|+..+.+   ..|++||+.+++...+....+.+.+..|+|||+.|
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            467778876555455556778899999999 99988887643   45999999998877666566677889999999988


Q ss_pred             EE-EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE--CCc-ceeeEEeCCC
Q 005956          407 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GVD-VIHKFKGLPK  482 (667)
Q Consensus       407 ~~-gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd--~~~-~~~~~~~~~~  482 (667)
                      +. .+.+|...||.+.........+  ..    +........|+|||..+++++..++...||.  ... .......  .
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~~~~l--t~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~  326 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSGLRRL--TQ----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--T  326 (427)
T ss_pred             EEEEccCCCceEEEEECCCCCcEEC--CC----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--C
Confidence            75 5678877777654322111211  11    1234567889999854444544556666664  332 2222222  2


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCCc
Q 005956          483 SGSQMSASFTTTGKHIISIGDDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT  548 (667)
Q Consensus       483 ~~~v~~v~~spdg~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~  548 (667)
                      .......+|+|||++|+..+.++   .|++||+.++......... ......|+|||+.|+......+.
T Consensus       327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RDESPSFAPNGRYILYATQQGGR  394 (427)
T ss_pred             CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-CccCceECCCCCEEEEEEecCCC
Confidence            23344678999999999877654   6999999887654433222 23456899999999998876554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=8.1e-12  Score=136.55  Aligned_cols=221  Identities=11%  Similarity=0.104  Sum_probs=150.0

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      .+.+..|.+.|.+.+|+|||+.|+..+.   +..|.+||+.++..                                   
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----------------------------------  238 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----------------------------------  238 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----------------------------------
Confidence            3556788899999999999999988764   46899999875321                                   


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCc--EEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~--I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s  367 (667)
                                 ..+..+.+.+....|+|+| .| ++.+.++.  |.+||+.++.......+........|+| +++.|+.
T Consensus       239 -----------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f  306 (435)
T PRK05137        239 -----------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVF  306 (435)
T ss_pred             -----------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEE
Confidence                       2233455567788999999 55 46666665  7777998887766555666677899999 8998887


Q ss_pred             EecC---CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC---CcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956          368 GSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       368 gs~D---g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d---g~i~l~d~~~~~~~~~~~~~~~~~~~~~~  441 (667)
                      .+..   ..|+++|+.++....+......+....|+|||+.|+....+   ..|.+||+.+.....  +  ..     ..
T Consensus       307 ~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~--l--t~-----~~  377 (435)
T PRK05137        307 ESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI--L--TS-----GF  377 (435)
T ss_pred             EECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe--c--cC-----CC
Confidence            7643   36888899888776665555567778999999999887654   257778875543221  1  11     12


Q ss_pred             CeEEEEEccCCCeEEEEEeCC-----CcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956          442 KITGIQFSRDESQRIMITSED-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp  493 (667)
                      .+..+.|+|||..+++++...     ..++++|+....... .. ..+.+...+|+|
T Consensus       378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~-l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE-VP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE-cc-CCCCccCcccCC
Confidence            466789999974444444433     257777865322221 11 233455666765

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.45  E-value=2.5e-12  Score=132.27  Aligned_cols=224  Identities=16%  Similarity=0.218  Sum_probs=154.0

Q ss_pred             ccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEE-EEEEee------CCCCEEEEEecCCeEEEEe
Q 005956          307 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT-CVQFNP------IDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       307 gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~-~l~f~p------~d~~~l~sgs~Dg~v~iwd  378 (667)
                      .|...|.++.|+.+..++..+.|..+.+|.--+........ ..+.|. .+...+      .....|+.++.||.+.|.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            46667789999987766666666666665433332222221 122111 111111      1245788899999999987


Q ss_pred             cCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       379 l~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      -...--.....|.+.+.+-.|+|||..|++++.||.|++|.-.+.-.. .       ......+|.|++|.|+..+.+++
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS-t-------l~Q~~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS-T-------VVQNEESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH-H-------HhhcCceeEEEEECCCCCceEEe
Confidence            544333346678899999999999999999999999999987643221 1       11123789999999997666666


Q ss_pred             EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcE
Q 005956          459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS  538 (667)
Q Consensus       459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~  538 (667)
                      .+.  .+.|=.+......++-..|.+-|.++.|++..+.|++|++|-..+|||-.....-........++.++|+|| ..
T Consensus       164 ~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~  240 (737)
T KOG1524|consen  164 QGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KD  240 (737)
T ss_pred             cCC--eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cc
Confidence            554  344444443333344444999999999999999999999999999999887765555566777888899998 55


Q ss_pred             EEE
Q 005956          539 VAV  541 (667)
Q Consensus       539 lav  541 (667)
                      .++
T Consensus       241 ~~v  243 (737)
T KOG1524|consen  241 YLL  243 (737)
T ss_pred             eee
Confidence            555

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.1e-11  Score=135.29  Aligned_cols=221  Identities=16%  Similarity=0.167  Sum_probs=146.5

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      .+.+..|...|.+.+|+|||++|+..+.+   ..|.+|++.++..                                   
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----------------------------------  240 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----------------------------------  240 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------------
Confidence            34566788889999999999999988743   4688999875322                                   


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s  367 (667)
                                 ..+..+.+...++.|+|+| .| ++.+.++  .|.+||+.+++......+.......+|+| +++.|+.
T Consensus       241 -----------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f  308 (433)
T PRK04922        241 -----------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYF  308 (433)
T ss_pred             -----------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEE
Confidence                       1122233344578999999 55 4556665  59999999888766555655567889999 8988887


Q ss_pred             Eec-CCe--EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC---cEEEEEecCCcceeeeEeeccccCcCCC
Q 005956          368 GSI-DGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       368 gs~-Dg~--v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg---~i~l~d~~~~~~~~~~~~~~~~~~~~~~  441 (667)
                      ++. ++.  |+++|+.+++...+.........++|+|||++|+..+.++   .|.+||+.++....  +. .      ..
T Consensus       309 ~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~--Lt-~------~~  379 (433)
T PRK04922        309 TSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT--LT-P------GS  379 (433)
T ss_pred             EECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE--CC-C------CC
Confidence            764 344  7777887777655444444455789999999998876543   58899987765431  11 1      12


Q ss_pred             CeEEEEEccCCCeEEEEEeCC--CcEEEEECCcc-eeeEEeCCCCCCeEEEEEcC
Q 005956          442 KITGIQFSRDESQRIMITSED--SKLRILDGVDV-IHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~d--g~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp  493 (667)
                      ......|+|||..++++....  +.|++++.... ...+..  +.+.+...+|+|
T Consensus       380 ~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~--~~g~~~~p~wsp  432 (433)
T PRK04922        380 LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS--ADGEVREPAWSP  432 (433)
T ss_pred             CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc--CCCCCCCCccCC
Confidence            234578999974444444332  35777787532 222322  345566677775

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.5e-11  Score=121.34  Aligned_cols=226  Identities=15%  Similarity=0.222  Sum_probs=159.3

Q ss_pred             cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC----C
Q 005956          310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----K  382 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~----~  382 (667)
                      ..+..++|++.- .++++..|-+|++||-.. .+...++  ....|+|++|-|.....|+.|... -|.||....    +
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            457788999855 789999999999999876 5555554  456899999999778888888765 499997542    1


Q ss_pred             e-----------EEEecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          383 R-----------VVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       383 ~-----------~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      +           +.+. ..+..|+++.|.+||..+++++. +..|.|||..++......       ....+.++-+.|+|
T Consensus       177 r~~~~~s~~~~qvl~~-pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-------~~glgg~slLkwSP  248 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQD-PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-------PKGLGGFSLLKWSP  248 (445)
T ss_pred             cccccccccchhheeC-CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-------ccCCCceeeEEEcC
Confidence            1           1111 22367999999999999998774 678999999987664321       12237789999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc--ccc--------
Q 005956          451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF--PSS--------  520 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~--~~~--------  520 (667)
                      || .+++++.-|+..++|+..+.....+-....+.|...+|+|+|++|.-+.. |.-.+|.+.-...  ...        
T Consensus       249 dg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~  326 (445)
T KOG2139|consen  249 DG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRV  326 (445)
T ss_pred             CC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceee
Confidence            96 88999999999999975543333332224568999999999998765542 3344555432111  000        


Q ss_pred             -----------ccc----cCccceeEEccCCcEEEEecCCCC
Q 005956          521 -----------KQK----NSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       521 -----------~~~----~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                                 ...    .....+++|.|.|.+||+...+..
T Consensus       327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence                       000    223456889999999999877654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.42  E-value=4.1e-13  Score=144.39  Aligned_cols=243  Identities=19%  Similarity=0.269  Sum_probs=179.6

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ..-++...+.||.+.|+.++.+.+..++|+++.|..|+||.+..                                    
T Consensus       220 et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~------------------------------------  263 (1113)
T KOG0644|consen  220 ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD------------------------------------  263 (1113)
T ss_pred             cchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC------------------------------------
Confidence            34456678899999999999999999999999999999999985                                    


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE------eeCCCcEEEEEEeeCCCC
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV------FDHHNYVTCVQFNPIDDN  363 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~------~~h~~~V~~l~f~p~d~~  363 (667)
                               +.++..+.||++.|++|+|+|   ..+.+.||++++||.+ ...+..      +...+-+-.+.|-. ++.
T Consensus       264 ---------~~pvsvLrghtgavtaiafsP---~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~-~~~  329 (1113)
T KOG0644|consen  264 ---------GAPVSVLRGHTGAVTAIAFSP---RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFEN-NGD  329 (1113)
T ss_pred             ---------CchHHHHhccccceeeeccCc---cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccc-ccc
Confidence                     567888999999999999999   4488999999999987 111111      12344566777776 788


Q ss_pred             EEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          364 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      -+++++.|+.-..|.+.......     ..+.-+..+.+- .+.+++-.+-.+.+|++.++.+...       ...|...
T Consensus       330 ~f~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~-------l~ghsd~  397 (1113)
T KOG0644|consen  330 RFLTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN-------LMGHSDE  397 (1113)
T ss_pred             ccccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhh-------hcccccc
Confidence            89999999999888764321110     001111111111 3455556667788999887765422       2334578


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      +..+.++|-+....++++.||...|||+..  .++.+..  ....+....||+||..++....-|.++|.....++
T Consensus       398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~--gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI--GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec--ccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            899999998888889999999999999764  3333332  34566778999999999998888999998765543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=6.5e-12  Score=123.10  Aligned_cols=265  Identities=18%  Similarity=0.288  Sum_probs=172.6

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      ..+-|.++.|...|.+||||..+|.|.++.-.....                 +...+...-..+.      .    +..
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-----------------~ey~~~t~fqshe------p----EFD   76 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-----------------GEYNFQTEFQSHE------P----EFD   76 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccc-----------------cceeeeeeeeccC------c----ccc
Confidence            456799999999999999999999999997653111                 0000000000000      0    000


Q ss_pred             cceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCe-----------------------------------E
Q 005956          301 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ-----------------------------------C  342 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~-----------------------------------~  342 (667)
                      .+..+ .-...|..+.|.+++   .++..+.|++|++|.+....                                   |
T Consensus        77 YLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p  155 (433)
T KOG1354|consen   77 YLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP  155 (433)
T ss_pred             hhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence            01111 123568889998766   78888999999999874221                                   1


Q ss_pred             eEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC----eEEEecc-----cCCceEEEEEee-CCCEEEEEe
Q 005956          343 LNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVDWAD-----VRDVISAICYIP-DGKGFIVGS  410 (667)
Q Consensus       343 ~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~----~~~~~~~-----~~~~v~~v~~sp-dg~~l~~gs  410 (667)
                      .+.+.  |+.-|.+|.++. |...++++ .|=.|-+|++.--    .++.+..     ....|++..|+| ..+.++-.+
T Consensus       156 rRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  156 RRVYANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            22232  777899999998 88888876 4778999988632    2333333     335689999999 457888899


Q ss_pred             cCCcEEEEEecCCcceeeeEee---c--cc----cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC---cceeeEE
Q 005956          411 ITGTCHFYKASGNDLKLEKVDF---H--DR----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFK  478 (667)
Q Consensus       411 ~dg~i~l~d~~~~~~~~~~~~~---~--~~----~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~---~~~~~~~  478 (667)
                      ..|+|++.|++...+-...-.+   .  +.    ....-..|..+.|+++| +++++-.. -+|++||+.   ..+..+.
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~pv~t~~  311 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKPVETYP  311 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCCcceEEe
Confidence            9999999999954332110000   0  00    00112567889999996 66665443 689999974   3445554


Q ss_pred             eCCC----------CCC---eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          479 GLPK----------SGS---QMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       479 ~~~~----------~~~---v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      .+..          ...   -..++|+-++.+++||+..+.+++++...+..
T Consensus       312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence            4311          111   24578999999999999999999999776643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.42  E-value=6.4e-13  Score=134.74  Aligned_cols=263  Identities=15%  Similarity=0.195  Sum_probs=196.9

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      -..+.|+.+|++|+.|+.-|.|-.+|+.+...                                             ..+
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L---------------------------------------------~~E  166 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL---------------------------------------------HFE  166 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeeccccee---------------------------------------------eee
Confidence            45789999999999999999999999987432                                             222


Q ss_pred             eeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956          305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~  384 (667)
                      +. -...|.++.|-.+..+++....+.+.|||-. |..+..+.....|..+.|.| .--+|++++..|.++.-|+.+|++
T Consensus       167 i~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl  243 (545)
T KOG1272|consen  167 IN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL  243 (545)
T ss_pred             ee-hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchhhhcccc-hhheeeecccCCceEEEeechhhh
Confidence            21 2346888888877756666677899999965 66667777778899999999 778889999999999999999998


Q ss_pred             EE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          385 VD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       385 ~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                      +. +....+.+..++-+|-...+-+|...|+|.+|..........       ...|.++|.+|++.++| .++++++.|.
T Consensus       244 Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK-------iLcH~g~V~siAv~~~G-~YMaTtG~Dr  315 (545)
T KOG1272|consen  244 VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK-------ILCHRGPVSSIAVDRGG-RYMATTGLDR  315 (545)
T ss_pred             hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH-------HHhcCCCcceEEECCCC-cEEeeccccc
Confidence            85 555667788899999888999999999999999887665443       23346899999999996 9999999999


Q ss_pred             cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCC--Cc--ccccc-ccCccceeEEccCCc
Q 005956          464 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY-DEL--CF--PSSKQ-KNSVRSCEHFFSEGV  537 (667)
Q Consensus       464 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~-~~~--~~--~~~~~-~~~~~~~~~fs~dg~  537 (667)
                      .++|||++...+...... ..+...++||..|  +++.+....|.||.= -.+  ..  +-..| ....+..+.|.|-..
T Consensus       316 ~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  316 KVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED  392 (545)
T ss_pred             ceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence            999999987654443322 3456678887655  334445567999952 221  11  11122 223556678999888


Q ss_pred             EEEEecCCC
Q 005956          538 SVAVQWPGI  546 (667)
Q Consensus       538 ~lav~w~~~  546 (667)
                      +|.|+-...
T Consensus       393 vLGIGH~~G  401 (545)
T KOG1272|consen  393 VLGIGHAGG  401 (545)
T ss_pred             eeeccccCC
Confidence            888864443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.40  E-value=2.4e-11  Score=116.93  Aligned_cols=113  Identities=18%  Similarity=0.394  Sum_probs=90.8

Q ss_pred             cccceEEEEecCCC-eEE--EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---CeEEEEecCC
Q 005956          308 HKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE  381 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~--s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g~v~iwdl~~  381 (667)
                      ..++|.+++|+|++ .|+  +|..++.|.+||++ ++.+..+. ...+..+.|+| +|++|++++.+   |.|.+||+++
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence            34579999999998 544  45577899999997 56666664 56778999999 99999998754   6799999998


Q ss_pred             CeEEEecccCCceEEEEEeeCCCEEEEEec------CCcEEEEEecCCc
Q 005956          382 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGND  424 (667)
Q Consensus       382 ~~~~~~~~~~~~v~~v~~spdg~~l~~gs~------dg~i~l~d~~~~~  424 (667)
                      .+.+....+. .++.++|+|||++|++++.      |..++||+..+..
T Consensus       135 ~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~  182 (194)
T PF08662_consen  135 KKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL  182 (194)
T ss_pred             CEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence            8888766555 4789999999999999875      6788999987543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.36  E-value=2.8e-10  Score=123.96  Aligned_cols=201  Identities=18%  Similarity=0.260  Sum_probs=137.4

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE-EecCC--eE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDG--KV  374 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s-gs~Dg--~v  374 (667)
                      ...+..+...+....|+|++ +|+.+..+   ..|++||+.+++......+...+.++.|+| +++.|+. .+.++  .|
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccE
Confidence            34455566678899999999 77766543   479999999887666555666777899999 8876654 44443  59


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-C--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      ++||+.++....+..+........|+|||+.|+..+.. +  .|.++|+.+.+..  .+...      ...+..+.|+|+
T Consensus       261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--~l~~~------~~~~~~~~~spd  332 (417)
T TIGR02800       261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--RLTFR------GGYNASPSWSPD  332 (417)
T ss_pred             EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecC------CCCccCeEECCC
Confidence            99999988877766665556678999999998876643 3  5677777655432  22211      245677899999


Q ss_pred             CCeEEEEEeCCC---cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCC
Q 005956          452 ESQRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYDE  514 (667)
Q Consensus       452 g~~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---~I~iWd~~~  514 (667)
                      | .+|+.++.++   .|.+||+.........  .........|+|||++|+.++.++   .+++.+...
T Consensus       333 g-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       333 G-DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             C-CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            7 6666666655   7888887653222211  122344568999999998887654   455655444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=7.7e-11  Score=117.71  Aligned_cols=223  Identities=16%  Similarity=0.173  Sum_probs=160.8

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      ...-+++|..++.. || .|++|-.+|.+.+|.+..+...                                        
T Consensus       101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h----------------------------------------  138 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH----------------------------------------  138 (412)
T ss_pred             cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc----------------------------------------
Confidence            34556778777766 33 7888899999999999853321                                        


Q ss_pred             cCCcceeeeccccceEEEEecCCC--eEEEEeCC--CcEEEEecCCCeEeEEee----------CCCcEEEEEEeeCC--
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMD--KTVRMWQVGCNQCLNVFD----------HHNYVTCVQFNPID--  361 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~D--g~I~iWd~~~~~~~~~~~----------h~~~V~~l~f~p~d--  361 (667)
                       ..++..+..+ ..+..+.-++..  .+++|+..  ..+.|||++..+.+..-+          -.-+++.+.|.+ .  
T Consensus       139 -ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~  215 (412)
T KOG3881|consen  139 -SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSP  215 (412)
T ss_pred             -cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCC
Confidence             1223333333 334455555544  67779998  899999999875444322          233577899998 5  


Q ss_pred             CCEEEEEecCCeEEEEecCCCe-E-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          362 DNYFISGSIDGKVRIWGVCEKR-V-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~-~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      ...|++++.-+.|++||.+.++ + ..+.-...+++++...|+|+.+++|...|.+..||++.+++....      .+..
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~------~kg~  289 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG------LKGI  289 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc------cCCc
Confidence            7889999999999999998754 3 345556788999999999999999999999999999988765331      2333


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp  493 (667)
                      .+.|++|..+|.+ .++++++-|..|||+|+.+.....+.+ -...++.+.+.+
T Consensus       290 tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~  341 (412)
T KOG3881|consen  290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD  341 (412)
T ss_pred             cCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence            5889999999984 899999999999999987633322222 233455555543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=3.7e-10  Score=123.51  Aligned_cols=203  Identities=17%  Similarity=0.180  Sum_probs=129.5

Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeC-CC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE-EecCCe--EE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VR  375 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~-Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s-gs~Dg~--v~  375 (667)
                      ..+..+...+.+..|+||| .|+..+. ++  .|.+||+.+++...............|+| +++.|+. .+.++.  |+
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence            3444556788899999999 6665543 33  58888998887654443334455789999 8887764 455664  88


Q ss_pred             EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CCc--EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       376 iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg~--i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      ++|+.+++...+..+.......+|+|||+.|+..+. +|.  |.++|+.+++..  .+...+      .......|+|+|
T Consensus       290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--~Lt~~g------~~~~~~~~SpDG  361 (448)
T PRK04792        290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS--RLTFEG------EQNLGGSITPDG  361 (448)
T ss_pred             EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EEecCC------CCCcCeeECCCC
Confidence            889998888777666666788999999998887654 344  555566555432  222222      223456899998


Q ss_pred             CeEEEEEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCC
Q 005956          453 SQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-C--RVYVWNYDELC  516 (667)
Q Consensus       453 ~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-g--~I~iWd~~~~~  516 (667)
                      ..++++...++  .|.++|+.........  .........|+|||++|+..+.+ +  .+++++.+...
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~  428 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF  428 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            55445444455  4555676543222111  11122345899999998876543 3  47777875443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.34  E-value=1.2e-10  Score=112.17  Aligned_cols=148  Identities=14%  Similarity=0.295  Sum_probs=101.5

Q ss_pred             EEEEeeCCCCEEEEEec----------CCeEEEEec--CCCeEEEe-cccCCceEEEEEeeCCCEEEEE--ecCCcEEEE
Q 005956          354 CVQFNPIDDNYFISGSI----------DGKVRIWGV--CEKRVVDW-ADVRDVISAICYIPDGKGFIVG--SITGTCHFY  418 (667)
Q Consensus       354 ~l~f~p~d~~~l~sgs~----------Dg~v~iwdl--~~~~~~~~-~~~~~~v~~v~~spdg~~l~~g--s~dg~i~l~  418 (667)
                      .+.|+| .|++|+.-..          -+...+|.+  .......+ ....+.|.+++|+|+|+.|++.  ..++.+.+|
T Consensus        10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen   10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            567777 6666554332          123445544  33333332 2234569999999999987664  456799999


Q ss_pred             EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC---CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC
Q 005956          419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  495 (667)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg  495 (667)
                      |++....    ..+.      ...+..+.|+|+| ++|++++.   .|.|.+||..+.......  ....++.++|+|||
T Consensus        89 d~~~~~i----~~~~------~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPdG  155 (194)
T PF08662_consen   89 DVKGKKI----FSFG------TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPDG  155 (194)
T ss_pred             cCcccEe----Eeec------CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCCC
Confidence            9962211    1222      2567899999997 67777664   467999999866555444  33457899999999


Q ss_pred             CEEEEEeC------CCcEEEEEcCCC
Q 005956          496 KHIISIGD------DCRVYVWNYDEL  515 (667)
Q Consensus       496 ~~l~sgs~------Dg~I~iWd~~~~  515 (667)
                      ++|+++..      |+.++||++...
T Consensus       156 r~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  156 RYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CEEEEEEeccceeccccEEEEEecCe
Confidence            99999864      788999999754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.34  E-value=2.9e-11  Score=124.94  Aligned_cols=162  Identities=21%  Similarity=0.410  Sum_probs=117.9

Q ss_pred             cccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          222 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       222 ~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      +..|+|++|-|.+. .++.+-.+|.+.+||.......   ..+  .+..........+.....            .....
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~---t~p--~~~~~k~~~~f~i~t~ks------------k~~rN  281 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA---TAP--SYQALKDGDQFAILTSKS------------KKTRN  281 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccC---CCC--cccccCCCCeeEEeeeec------------cccCC
Confidence            47899999998554 5555677999999987421100   000  011111111111111000            01124


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      |+..+.--.+.|+..+|+||| +||+.+.||.+||+|..+.+.+..++ --+...|++|+| |++||++|+.|..|.||.
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEE
Confidence            556665556699999999999 99999999999999999988877765 456789999999 999999999999999999


Q ss_pred             cCCCeEEE-ecccCCceEEEEEee
Q 005956          379 VCEKRVVD-WADVRDVISAICYIP  401 (667)
Q Consensus       379 l~~~~~~~-~~~~~~~v~~v~~sp  401 (667)
                      +..++++. -.+|+..|+.|+|.|
T Consensus       361 f~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  361 FEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccceEEEeccccccceeeEeecc
Confidence            99999886 578999999999998

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.34  E-value=1.7e-09  Score=114.58  Aligned_cols=240  Identities=16%  Similarity=0.158  Sum_probs=147.7

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe-cCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs-~Dg~v~iw  377 (667)
                      +.+.++......-..+.|+||+ +++.++.|+.|.++|+.+++.+..+.......++++++ |+++++++. ..+.+.++
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEEEE
T ss_pred             eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCCCceeEe
Confidence            3455565443434457899999 88888999999999999999999999888889999999 999888775 68999999


Q ss_pred             ecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEE
Q 005956          378 GVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       378 dl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~  447 (667)
                      |..+.+++....        ....+.++..+|....+++.-. .+.|.+.|....+.... .+..       ........
T Consensus       106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-------g~~~~D~~  178 (369)
T PF02239_consen  106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-------GRFPHDGG  178 (369)
T ss_dssp             ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---------TTEEEEE
T ss_pred             ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-------cccccccc
Confidence            999988775332        2345778888888886666555 47888888776543322 2211       24567889


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCcceeeEE--------------------------eC---------------------
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDVIHKFK--------------------------GL---------------------  480 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~--------------------------~~---------------------  480 (667)
                      |.|++..++++....+.|-++|..+......                          .+                     
T Consensus       179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~  258 (369)
T PF02239_consen  179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA  258 (369)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred             cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence            9999755555556666777777543211110                          00                     


Q ss_pred             -------CCCCCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCCccccccc--cCccceeEEccCCcEEEEe-cCCC
Q 005956          481 -------PKSGSQMSASFTTTGKHIISI----GDDCRVYVWNYDELCFPSSKQK--NSVRSCEHFFSEGVSVAVQ-WPGI  546 (667)
Q Consensus       481 -------~~~~~v~~v~~spdg~~l~sg----s~Dg~I~iWd~~~~~~~~~~~~--~~~~~~~~fs~dg~~lav~-w~~~  546 (667)
                             ...+...-+..+|++++|.+.    ...+.|.|+|.++.+.......  ....-...|++||..+-++ |...
T Consensus       259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~  338 (369)
T PF02239_consen  259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN  338 (369)
T ss_dssp             TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred             CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence                   001111446679999999998    4458999999999865433221  2225567999999977664 5555


Q ss_pred             C
Q 005956          547 G  547 (667)
Q Consensus       547 ~  547 (667)
                      +
T Consensus       339 ~  339 (369)
T PF02239_consen  339 G  339 (369)
T ss_dssp             T
T ss_pred             C
Confidence            4

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=3.8e-10  Score=123.40  Aligned_cols=206  Identities=13%  Similarity=0.163  Sum_probs=136.9

Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCC-
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG-  372 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg-  372 (667)
                      +.....+..+...+....|+|+| .|+..+.+   ..|.+||+.+++..........+....|+| +++.|+ +.+.++ 
T Consensus       188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~  266 (430)
T PRK00178        188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGN  266 (430)
T ss_pred             CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCC
Confidence            34455666777889999999999 77665543   368999999887765554455566789999 888776 444454 


Q ss_pred             -eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CC--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       373 -~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                       .|++||+.+++...+..+........|+|||+.|+..+. +|  .|.++++.+++..  .+...+      .......|
T Consensus       267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~lt~~~------~~~~~~~~  338 (430)
T PRK00178        267 PEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RVTFVG------NYNARPRL  338 (430)
T ss_pred             ceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCC------CCccceEE
Confidence             588889999887776666666778899999998887664 33  4666676665532  222211      22345789


Q ss_pred             ccCCCeEEEEEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCC
Q 005956          449 SRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL  515 (667)
Q Consensus       449 sp~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~  515 (667)
                      +|+|...+++...++  .|.++|+.....+...  .........|+|||++|+..+.+   ..|++++++..
T Consensus       339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             CCCCCEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            999744444443344  5788887643222211  11222356899999999877654   35777777544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.32  E-value=1.7e-10  Score=129.56  Aligned_cols=223  Identities=17%  Similarity=0.184  Sum_probs=160.7

Q ss_pred             eecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCC-------CeEeEEee-CCCcEEEEEE
Q 005956          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC-------NQCLNVFD-HHNYVTCVQF  357 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~-------~~~~~~~~-h~~~V~~l~f  357 (667)
                      +..+..-|...+..+..+..|...|..++.++..  +++|||.||+|++||...       .++..++. ....+.++.+
T Consensus      1027 ~~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1027 VGSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred             cCCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe
Confidence            3345556777888899999999999999988654  999999999999999753       23344444 6678999999


Q ss_pred             eeCCCCEEEEEecCCeEEEEecCCCe-------EEEecc--cCCc-eEEEEEee-CCC-EEEEEecCCcEEEEEecCCcc
Q 005956          358 NPIDDNYFISGSIDGKVRIWGVCEKR-------VVDWAD--VRDV-ISAICYIP-DGK-GFIVGSITGTCHFYKASGNDL  425 (667)
Q Consensus       358 ~p~d~~~l~sgs~Dg~v~iwdl~~~~-------~~~~~~--~~~~-v~~v~~sp-dg~-~l~~gs~dg~i~l~d~~~~~~  425 (667)
                      .+ .++.++.++.||.|++.++....       .....+  ..+. +..-+|.. .+. .++.++..+.|..||++....
T Consensus      1107 ~~-~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1107 CG-NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred             cc-CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence            99 89999999999999999987621       111111  1122 33333433 233 688899999999999987554


Q ss_pred             eee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCC---CEEE
Q 005956          426 KLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTG---KHII  499 (667)
Q Consensus       426 ~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg---~~l~  499 (667)
                      ... +..      ...+.|++++.+|.+ .++++|+..|.+.+||++  ..+..+.. ++..++..+..+|-.   ..++
T Consensus      1186 ~w~lk~~------~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~-P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1186 AWRLKNQ------LRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEH-PARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred             HHhhhcC------ccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccC-cccCCcceEEeeccCCCCceEE
Confidence            332 111      123889999999985 799999999999999987  33444433 355788888776643   4555


Q ss_pred             EEe--CCCcEEEEEcCCCCccc
Q 005956          500 SIG--DDCRVYVWNYDELCFPS  519 (667)
Q Consensus       500 sgs--~Dg~I~iWd~~~~~~~~  519 (667)
                      +++  ..+-|-+|++.++.+..
T Consensus      1258 s~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred             EecccCCCceeeeecccCcceE
Confidence            554  46789999999986543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=2.2e-10  Score=124.78  Aligned_cols=199  Identities=16%  Similarity=0.145  Sum_probs=136.1

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      +.+..|...+...+|+|||++||.+..+   ..|.+||+.++..                                    
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~------------------------------------  226 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR------------------------------------  226 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE------------------------------------
Confidence            4556677789999999999999988754   4799999875321                                    


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                                ..+..+...+.+++|+|++ .|+ +.+.++  .|.+||+.++.......+........|+| +++.|+..
T Consensus       227 ----------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~  295 (417)
T TIGR02800       227 ----------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFT  295 (417)
T ss_pred             ----------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEE
Confidence                      1222344456678999998 554 555444  58889998887665555555556779999 88888776


Q ss_pred             ecC-C--eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC---cEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~D-g--~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg---~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +.. +  .|+++|+.+++...+......+..+.|+|+|++++.+..++   .|.+||+.+.....  +.  .     ...
T Consensus       296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~--l~--~-----~~~  366 (417)
T TIGR02800       296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV--LT--D-----TGL  366 (417)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE--cc--C-----CCC
Confidence            643 2  58888998887766655566678889999999999988775   78888887643321  11  1     012


Q ss_pred             eEEEEEccCCCeEEEEEeCCC--cEEEEEC
Q 005956          443 ITGIQFSRDESQRIMITSEDS--KLRILDG  470 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg--~I~iwd~  470 (667)
                      .....|+|+|..++++...++  .+++.+.
T Consensus       367 ~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       367 DESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            345689999744444444443  3455553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.30  E-value=1.1e-08  Score=108.22  Aligned_cols=248  Identities=16%  Similarity=0.189  Sum_probs=158.3

Q ss_pred             cEEEEEEcCCCCEEEEEEC----CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          224 CIWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~----Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .-..++++|++++|.+..+    +|.|..|++....                  +.+                       
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------------------g~L-----------------------   76 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT------------------GTL-----------------------   76 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT------------------TEE-----------------------
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc------------------cee-----------------------
Confidence            3456889999999999987    4688888877420                  010                       


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEecCC-CeEeEE---ee-----------CCCcEEEEEEeeCCC
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQCLNV---FD-----------HHNYVTCVQFNPIDD  362 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~-~~~~~~---~~-----------h~~~V~~l~f~p~d~  362 (667)
                      ..+............++++|++ +|+++. .+|+|.++++.. +.....   +.           ......++.|+| ++
T Consensus        77 ~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg  155 (345)
T PF10282_consen   77 TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DG  155 (345)
T ss_dssp             EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TS
T ss_pred             EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CC
Confidence            1122222233445678899999 666665 589999999986 443322   22           234678999999 88


Q ss_pred             CEEEEEec-CCeEEEEecCCCe--EEE----ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEec--CCcceee-eEe
Q 005956          363 NYFISGSI-DGKVRIWGVCEKR--VVD----WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLE-KVD  431 (667)
Q Consensus       363 ~~l~sgs~-Dg~v~iwdl~~~~--~~~----~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~--~~~~~~~-~~~  431 (667)
                      +++++... ...|.+|++....  +..    ..........++|+|+|+++.+.. .++.|.+|++.  .+.+... .+.
T Consensus       156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~  235 (345)
T PF10282_consen  156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS  235 (345)
T ss_dssp             SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence            88877653 3579999997654  322    234556789999999999887765 56789999998  3333222 222


Q ss_pred             eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---ceeeEE-eCCCCCCeEEEEEcCCCCEEEEEe-CCCc
Q 005956          432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFK-GLPKSGSQMSASFTTTGKHIISIG-DDCR  506 (667)
Q Consensus       432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs-~Dg~  506 (667)
                      ..............|.++|||..++++....+.|.+|++..   ...... ..........++++|+|++|+++. .++.
T Consensus       236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence            11111111236789999999744444555677899999731   122211 111345589999999999999887 4578


Q ss_pred             EEEEEcC
Q 005956          507 VYVWNYD  513 (667)
Q Consensus       507 I~iWd~~  513 (667)
                      |.+|+++
T Consensus       316 v~vf~~d  322 (345)
T PF10282_consen  316 VSVFDID  322 (345)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=1.5e-10  Score=122.86  Aligned_cols=287  Identities=16%  Similarity=0.242  Sum_probs=191.4

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      .....|+.|+....|+|+||.||.++|-.+.+....       .         +..-         +..+.     .-..
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d-------~---------~~~g---------laa~s-----nLsm   63 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD-------L---------NKSG---------LAAAS-----NLSM   63 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCc-------c---------cccc---------ccccc-----ccch
Confidence            456789999999999999999999999988763210       0         0000         00000     0123


Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      -+++.||.+.|.-+.|+.+. .|-|+..+|.|.||-+-.+.-....   ...+.|.++.|+. +|..++....||.|.+=
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVG  142 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEE
Confidence            46789999999999999887 8889999999999998776533222   3566899999999 99999999999999888


Q ss_pred             ecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce---ee-eEeeccccCcCCCCeEEEEEc----
Q 005956          378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK---LE-KVDFHDRKKTSGNKITGIQFS----  449 (667)
Q Consensus       378 dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~---~~-~~~~~~~~~~~~~~I~~l~~s----  449 (667)
                      .+...++....-.......+.|++|.+.++.+-.+|.+++||...+-..   .. .+...+.....+.+|..+.|.    
T Consensus       143 svdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  143 SVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             eeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            8877766532222233557889999999999999999999998754211   11 122222222233456667763    


Q ss_pred             ----cCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---------cEEEEEcCCC
Q 005956          450 ----RDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---------RVYVWNYDEL  515 (667)
Q Consensus       450 ----p~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---------~I~iWd~~~~  515 (667)
                          |+ ...++++-..|.+.|..-. +.......  ..-.+..+.|+++|..||.+|.|.         .|.+|..-+.
T Consensus       223 ~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~  299 (1189)
T KOG2041|consen  223 QPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGH  299 (1189)
T ss_pred             ccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchh
Confidence                34 4689999999998887533 22222222  236688899999999999998653         4555543322


Q ss_pred             CccccccccCccceeEEccCCcEEEEe
Q 005956          516 CFPSSKQKNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       516 ~~~~~~~~~~~~~~~~fs~dg~~lav~  542 (667)
                      -....+.....++.+.|...|-.+|++
T Consensus       300 i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  300 IVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             heEEEecCCceeeeeEEcCCceEEEEE
Confidence            222222233334444555555555544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=2.1e-11  Score=124.54  Aligned_cols=254  Identities=19%  Similarity=0.235  Sum_probs=188.2

Q ss_pred             eccccccEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          218 IQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       218 l~~H~~~I~~v~fspd--g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ..+|...|...+|-|.  .+-|++++.||.|++=.+.....                                       
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~---------------------------------------  221 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY---------------------------------------  221 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc---------------------------------------
Confidence            4589999999999884  46899999999999876653110                                       


Q ss_pred             cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe----eCCC---cEEEEEEeeCCCCEEE
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF----DHHN---YVTCVQFNPIDDNYFI  366 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~----~h~~---~V~~l~f~p~d~~~l~  366 (667)
                         ......+..|.+.|.-++.-|+.  .|++++.|+.+.-.|+.++.+...+    .+..   ....++.+|.+.++++
T Consensus       222 ---~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa  298 (559)
T KOG1334|consen  222 ---VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA  298 (559)
T ss_pred             ---eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence               11234456799999999999987  8999999999999999887654444    2333   5778999998888999


Q ss_pred             EEecCCeEEEEecCCCeEE-------Eec------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc--------
Q 005956          367 SGSIDGKVRIWGVCEKRVV-------DWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--------  425 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~-------~~~------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~--------  425 (667)
                      +|+.|..+++||.+.-...       .+.      ...-.|++++|+.++.-+++...|-.|++|.-..+..        
T Consensus       299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~  378 (559)
T KOG1334|consen  299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP  378 (559)
T ss_pred             cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence            9999999999998752211       111      2334599999999999999999999999995443222        


Q ss_pred             --eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          426 --KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       426 --~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                        ......+.+|.+  ...|.++-|-.-...++++|+.-|.|.||+-.  ..++...+..|  .|+|+.-+|--..||+.
T Consensus       379 ~~~~~k~vYKGHrN--~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  379 REQYVKRVYKGHRN--SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASS  454 (559)
T ss_pred             hhhccchhhccccc--ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCchhhcc
Confidence              111111233322  23488888754335899999999999999965  34555555433  88999999999999999


Q ss_pred             eCCCcEEEEEcCCCCc
Q 005956          502 GDDCRVYVWNYDELCF  517 (667)
Q Consensus       502 s~Dg~I~iWd~~~~~~  517 (667)
                      |-|..|+||-..+.+.
T Consensus       455 Gid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  455 GIDHDVKIWTPLTAER  470 (559)
T ss_pred             CCccceeeecCCcccc
Confidence            9999999998865543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=5.2e-10  Score=122.32  Aligned_cols=220  Identities=15%  Similarity=0.136  Sum_probs=137.3

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGE-DG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~-Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      +.+..+...+.+..|||||++|+..+. ++  .|.+||+.++...                                   
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-----------------------------------  255 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-----------------------------------  255 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence            445567788999999999999887654 33  4777777653221                                   


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCCc--EEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg~--I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                              .+..+.   +......|+|+| .|+ +.+.++.  |.++|+.+++......+........|+| +++.|+..
T Consensus       256 --------~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~  323 (448)
T PRK04792        256 --------KVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFT  323 (448)
T ss_pred             --------EecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence                    111112   223467999999 554 5566665  7778988887665555656677889999 88877766


Q ss_pred             ec-CC--eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-C--cEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~-Dg--~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +. ++  .|+++|+.+++...+..........+|+|||++|+..+.+ +  .|.++|+.++....  +.  ..     ..
T Consensus       324 s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~--lt--~~-----~~  394 (448)
T PRK04792        324 SERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV--LT--ST-----RL  394 (448)
T ss_pred             ECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE--cc--CC-----CC
Confidence            54 33  5777788888766543333334457899999999886653 4  34556766654322  11  10     11


Q ss_pred             eEEEEEccCCCeEEEEEeCCCc--EEEEECCc-ceeeEEeCCCCCCeEEEEEcC
Q 005956          443 ITGIQFSRDESQRIMITSEDSK--LRILDGVD-VIHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~--I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp  493 (667)
                      .....|+|+|..++++...++.  +++++... ....+..  +.+.+...+|+|
T Consensus       395 d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~--~~g~~~~p~Wsp  446 (448)
T PRK04792        395 DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA--GQGEVKSPAWSP  446 (448)
T ss_pred             CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence            2244799998555555555554  66667542 2222222  344566677776

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=2.9e-10  Score=118.48  Aligned_cols=232  Identities=9%  Similarity=0.061  Sum_probs=162.9

Q ss_pred             ccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-----------------------------C-------
Q 005956          307 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-----------------------------H-------  348 (667)
Q Consensus       307 gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-----------------------------h-------  348 (667)
                      +|...-+.|..+|||  .+++|...-.|++||+..-.....-.                             |       
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            577888999999999  67788888899999986432211000                             0       


Q ss_pred             ----CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956          349 ----HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (667)
Q Consensus       349 ----~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~  423 (667)
                          ...-..++++..... |++++....|+-+++..|+.+.... ..+.++++..++-..+|++|+.+|.+.+||.++.
T Consensus       129 ~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence                011123333332333 4444455678889999999876444 4478999999999899999999999999999976


Q ss_pred             cceeeeEeeccccCcCC-----CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEeCCCCCCeEEEEEcCC--C
Q 005956          424 DLKLEKVDFHDRKKTSG-----NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTT--G  495 (667)
Q Consensus       424 ~~~~~~~~~~~~~~~~~-----~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~~spd--g  495 (667)
                      ..... +....+...+.     ..|+++.|+.+| -.+++|..+|.|.|||++... ...+.+....+|..+.|-+.  +
T Consensus       208 srv~~-l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  208 SRVGT-LDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             hhhee-eecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence            55432 22222222222     349999999985 899999999999999998543 33445567788999999665  4


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEe
Q 005956          496 KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       496 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~  542 (667)
                      +.|++. +...++|||-.+++............-.+|-|++.++.++
T Consensus       286 ~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  286 NKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             ceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence            456554 3568999999999876665555556666788877766665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=8.5e-10  Score=120.66  Aligned_cols=220  Identities=14%  Similarity=0.100  Sum_probs=140.1

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      +.+..|...+...+|||||++|+..+.+   ..|.+|++.++...                                   
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-----------------------------------  236 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-----------------------------------  236 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-----------------------------------
Confidence            4566778889999999999999877644   35888888753221                                   


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                                 .+....+.+....|+|+| .|+ +...++  .|.+||+.+++......+........|+| +++.|+..
T Consensus       237 -----------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~  304 (430)
T PRK00178        237 -----------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFT  304 (430)
T ss_pred             -----------EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEE
Confidence                       111122334568999999 555 555555  58888999887766555555667789999 88877766


Q ss_pred             ec-C--CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-C--cEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SI-D--GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~-D--g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +. +  ..|+++|+.+++...+...........|+|||+.++..... +  .|.+||+.++....  +.. .      ..
T Consensus       305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt~-~------~~  375 (430)
T PRK00178        305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LTD-T------SL  375 (430)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--ccC-C------CC
Confidence            54 3  35888888888765543333334567899999999887653 3  47788887765422  111 1      11


Q ss_pred             eEEEEEccCCCeEEEEEeCCC--cEEEEECCcc-eeeEEeCCCCCCeEEEEEcC
Q 005956          443 ITGIQFSRDESQRIMITSEDS--KLRILDGVDV-IHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp  493 (667)
                      .....|+|+|..++++...++  .|.+++.... ...+..  +.+.+...+|+|
T Consensus       376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~--~~g~~~~p~ws~  427 (430)
T PRK00178        376 DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPT--AQGEVREPSWSP  427 (430)
T ss_pred             CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence            224589999855555554444  4666666432 222222  344556666765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=3e-09  Score=111.14  Aligned_cols=196  Identities=13%  Similarity=0.198  Sum_probs=131.3

Q ss_pred             ccccceEEEEecCCC---eEEE-----EeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEeeCCCCEEEEEecC---
Q 005956          307 GHKGDVLDLAWSNSN---YLLS-----CSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSID---  371 (667)
Q Consensus       307 gh~~~V~~l~~s~~~---~l~s-----~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~d~~~l~sgs~D---  371 (667)
                      -|...|+.+.++|.+   .+++     .|.-..|+||............    ....=..+.|++....+|+.++.|   
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk  242 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK  242 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence            355677888888884   3333     3445578888775322211111    122233567777444445444432   


Q ss_pred             --------CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEE--EecCCcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956          372 --------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       372 --------g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~--gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~  441 (667)
                              .+++++++.+..+.......++|.+++|+|+|+.+++  |..-..+.|||++..-. .   .+.      .+
T Consensus       243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~---df~------eg  312 (566)
T KOG2315|consen  243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-F---DFP------EG  312 (566)
T ss_pred             CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-E---eCC------CC
Confidence                    4688888886666666667899999999999987766  55677899999985432 1   121      26


Q ss_pred             CeEEEEEccCCCeEEEEEeC---CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEc
Q 005956          442 KITGIQFSRDESQRIMITSE---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD------DCRVYVWNY  512 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~------Dg~I~iWd~  512 (667)
                      +-+.+-|+|.| ++|+.++-   .|.|-|||..+.....+.  .....+-+.|+|||.|++|+..      |+.++||++
T Consensus       313 pRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~--~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  313 PRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKF--KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             CccceEECCCC-CEEEEeecCCCCCceEEEeccchhhcccc--ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            77889999997 66666654   479999998874443333  3344567899999999998863      688999999


Q ss_pred             CCC
Q 005956          513 DEL  515 (667)
Q Consensus       513 ~~~  515 (667)
                      .+.
T Consensus       390 tG~  392 (566)
T KOG2315|consen  390 TGS  392 (566)
T ss_pred             cCc
Confidence            865

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.22  E-value=1.9e-09  Score=113.42  Aligned_cols=213  Identities=14%  Similarity=0.122  Sum_probs=146.2

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEE
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAI  397 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v  397 (667)
                      .++-|...|.|.+|++..++....+.   |.+.|.++.++. +-..|.+++.|+.+..|+...++... +......+.++
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            78889999999999999999988874   999999999998 88899999999999999999998775 66677789999


Q ss_pred             EEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC-----CCeEEEEEeCCCcEEEEECCc
Q 005956          398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD-----ESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       398 ~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~-----g~~~l~~~s~dg~I~iwd~~~  472 (667)
                      |++|||..+++++  +.|.+||+++.+....       ...|.++|.+++|..+     |..+|.+...+.-|.+|-...
T Consensus       151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~-------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  151 CISPDGKILLTAS--RQIKVLDIETKEVVIT-------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEcCCCCEEEecc--ceEEEEEccCceEEEE-------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999999999876  5899999998876543       3345689999999776     534444555566677775331


Q ss_pred             ------ceeeEEeCCCCCCeEE-EEEcCCCC--EEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956          473 ------VIHKFKGLPKSGSQMS-ASFTTTGK--HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       473 ------~~~~~~~~~~~~~v~~-v~~spdg~--~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                            ..+.+..  ...++.. --...++.  +.++.+..+.++.|...........+...+..+..++.+| ++|+.|
T Consensus       222 ~~kkks~~~sl~~--~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~~s~g-~~a~~~  298 (541)
T KOG4547|consen  222 EDKKKSLSCSLTV--PDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNADSSKG-FLAALF  298 (541)
T ss_pred             ccccchhheeecc--CCCCeEeccccccccccceEEeeeccCceeeeccccHHHHhcCccccccceeeecccc-hhhhhc
Confidence                  2222222  1222221 11223333  4444444444555554444333333333444455666666 677777


Q ss_pred             CCCC
Q 005956          544 PGIG  547 (667)
Q Consensus       544 ~~~~  547 (667)
                      ..+.
T Consensus       299 ~~~~  302 (541)
T KOG4547|consen  299 GIDK  302 (541)
T ss_pred             ccch
Confidence            6655

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=4.8e-09  Score=113.88  Aligned_cols=208  Identities=10%  Similarity=0.055  Sum_probs=128.7

Q ss_pred             ceeeeccccceEEEEecCCC-e--EE-EEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec-----
Q 005956          302 LQELHGHKGDVLDLAWSNSN-Y--LL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----  370 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~--l~-s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~-----  370 (667)
                      ...+......+..-.|+||| .  ++ ++..++  .|.+.++.+++..+...........+|+| |++.|+..+.     
T Consensus       177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~  255 (428)
T PRK01029        177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNP  255 (428)
T ss_pred             ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCc
Confidence            34454455567788999998 3  32 444443  57777998887666655566667789999 9988876553     


Q ss_pred             CCeEEEEecCC---CeEEEeccc-CCceEEEEEeeCCCEEEEEe-cCCcEEEEEec--CCcceeeeEeeccccCcCCCCe
Q 005956          371 DGKVRIWGVCE---KRVVDWADV-RDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       371 Dg~v~iwdl~~---~~~~~~~~~-~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~--~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                      +-.+.+|++..   ++...+... .......+|+|||+.|+..+ .+|...+|.+.  ........+..      ....+
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~------~~~~~  329 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK------KYRNS  329 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc------CCCCc
Confidence            22344477765   333343332 23456789999999888766 46655666543  21111111111      12456


Q ss_pred             EEEEEccCCCeEEEEEeCC--CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCc
Q 005956          444 TGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDELCF  517 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---Dg~I~iWd~~~~~~  517 (667)
                      ....|+|||..+++++..+  ..|++||+.......... ....+....|+|||++|+..+.   ...|++||+.+++.
T Consensus       330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            7889999974444444433  368999976433222111 2345677899999998875443   35789999987754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.19  E-value=1.3e-08  Score=107.91  Aligned_cols=196  Identities=15%  Similarity=0.182  Sum_probs=135.9

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcE-EEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEe
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYI  400 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V-~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~s  400 (667)
                      ++++-..++.|.|.|..+.+.+..+.....+ ..+.|+| |++++++++.||.|.++|+.+++++...........++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s   86 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVS   86 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEc
Confidence            4456677899999999999999999855544 4577899 9999999999999999999999998877777788999999


Q ss_pred             eCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccc-cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eE
Q 005956          401 PDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KF  477 (667)
Q Consensus       401 pdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~-~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~  477 (667)
                      +||++++++. ..+.+.++|..+.+.... +...+. ......++.++..+|....++++--.-+.|.+.|..+... ..
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~-I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAETLEPVKT-IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEE-EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred             CCCCEEEEEecCCCceeEeccccccceee-cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence            9999999876 689999999988766543 222111 1113467888888888655666666678999999664311 11


Q ss_pred             EeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCccc
Q 005956          478 KGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       478 ~~~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~~~  519 (667)
                      +............|+|+++|++.+ ..++.|-++|.++.+...
T Consensus       166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             eeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence            122245667789999999987765 456789999998876543

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.18  E-value=1.9e-08  Score=98.36  Aligned_cols=163  Identities=15%  Similarity=0.194  Sum_probs=118.7

Q ss_pred             CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecC-CCeEeEEee---CCCcEEEEEEeeCCCCEEEE-EecCCeE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD---HHNYVTCVQFNPIDDNYFIS-GSIDGKV  374 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~-~~~~~~~~~---h~~~V~~l~f~p~d~~~l~s-gs~Dg~v  374 (667)
                      +++.++. ...+|.++.+.++..+ .. ..+.|.||... +.+.++.+.   ....+.++.-+. +..+|+. |-.-|.|
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~riV-vv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRDRIV-VV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQV  161 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCCeEE-EE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceE
Confidence            4444443 4678999999887622 22 34689999987 445555553   233333333222 2333433 3345899


Q ss_pred             EEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCc-EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          375 RIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       375 ~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~-i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      .|-|+...+.   ..+..|...|.|++.+.+|..+|+++..|+ |||||..++....+.-....     ...|.+++|+|
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-----~A~iy~iaFSp  236 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-----RADIYCIAFSP  236 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-----hheEEEEEeCC
Confidence            9999987665   678889999999999999999999999996 69999999988766333222     37899999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCc
Q 005956          451 DESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                      +. .+|+++|..|+|+|+.++.
T Consensus       237 ~~-s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  237 NS-SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             Cc-cEEEEEcCCCeEEEEEeec
Confidence            95 8999999999999998653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.18  E-value=7.4e-10  Score=108.89  Aligned_cols=239  Identities=14%  Similarity=0.297  Sum_probs=152.3

Q ss_pred             cccEEEEEEcCCCC--EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          222 KGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       222 ~~~I~~v~fspdg~--~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      ...|+.+.|.++++  .++..+.|.+|++|.+.......-.+.... .........+++.....         ....+..
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~-~~~~~~~~~lr~p~~~~---------~~~~vea  153 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPE-EGPPGTITSLRLPVEGR---------HDLEVEA  153 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccc-cCCCCccceeeceeecc---------ccceeee
Confidence            34688888988765  667778899999999975332210000000 00000011111110000         0011122


Q ss_pred             Ccceeee-ccccceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEe--e------CCCcEEEEEEeeCCCCEEEEEe
Q 005956          300 SPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVF--D------HHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       300 ~~~~~l~-gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~--~------h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                      .|.+.+. +|+-.|.+|.++.|+..+.++.|-.|.+|+++- .++....  +      .+.-|++..|+|...+.|+..+
T Consensus       154 ~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  154 SPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            3344443 799999999999999555556678899999863 2332222  1      2346899999998889999999


Q ss_pred             cCCeEEEEecCCCeEEE-----------------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956          370 IDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF  432 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~-----------------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~  432 (667)
                      ..|+|++.|++...+..                 +...-..|..+.|+++|+++++-.. -++++||++....+.....+
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence            99999999998644321                 1111234888999999999987543 58999999877666665555


Q ss_pred             ccccCc------CCCCe---EEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956          433 HDRKKT------SGNKI---TGIQFSRDESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       433 ~~~~~~------~~~~I---~~l~~sp~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                      +.....      ....|   ..++|+.++ .++++|+..+..+++++.+
T Consensus       313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  313 HEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             hHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCC
Confidence            543211      11222   457888885 7999999999999999653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.17  E-value=2.5e-10  Score=111.40  Aligned_cols=190  Identities=14%  Similarity=0.224  Sum_probs=135.5

Q ss_pred             ccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCC-CEEEEEecCCeEEEEecCCCeE
Q 005956          309 KGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRV  384 (667)
Q Consensus       309 ~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~-~~l~sgs~Dg~v~iwdl~~~~~  384 (667)
                      -..|.-+.|..+.  .|.....|+.|.+|++...+-...+. ....+..+.|+| ++ .++.+...+-.|.+|.+.+.+.
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEecccee
Confidence            3568889999888  45566788899999999888777775 677899999999 77 5666777899999999999988


Q ss_pred             EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc
Q 005956          385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  464 (667)
Q Consensus       385 ~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~  464 (667)
                      ....-.+..+..++|+|||++.+..+.-.....+++...+    .+.+-++.+...-..+++.|+||| .         .
T Consensus       127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~----~W~ll~~f~~dT~DltgieWsPdg-~---------~  192 (447)
T KOG4497|consen  127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK----AWILLKEFKLDTIDLTGIEWSPDG-N---------W  192 (447)
T ss_pred             EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH----HHHHHHhcCCCcccccCceECCCC-c---------E
Confidence            8777777778999999999999988764322222221100    111122223333557899999997 3         3


Q ss_pred             EEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          465 LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       465 I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      +.|||..-....+ ....+-.+..++|+|.+++|+.|+.|+.++|-|--+
T Consensus       193 laVwd~~Leykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  193 LAVWDNVLEYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             EEEecchhhheee-eeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence            5567743111111 111345688999999999999999999998876433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.17  E-value=1e-09  Score=108.03  Aligned_cols=240  Identities=13%  Similarity=0.253  Sum_probs=160.8

Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC-C------------ceeeeeeCCCCC-ccccCCCCeE
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-V------------AASCKSFTDDGG-FGSNAKEGKI  276 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~-~------------~~~~~~~~~~~~-~~~~~~~~~~  276 (667)
                      ++.+.+.++||.+.|++...-|-..-+++.+.|.++|||--.+ +            .+.+..+..... +......+.+
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV   92 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence            3455677889999999999999888899999999999995332 1            122222222221 1111111111


Q ss_pred             EecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEE
Q 005956          277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCV  355 (667)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l  355 (667)
                      .-         ..... .++ .-...+....|...|..+-|+... .+++.+.|+.+.---.+.+..+..+......+++
T Consensus        93 te---------fs~se-dfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~  161 (404)
T KOG1409|consen   93 TE---------FALSE-DFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASAL  161 (404)
T ss_pred             EE---------EEhhh-hhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCC
Confidence            11         11110 111 123455667899999999998766 8999999988765555666655555444444455


Q ss_pred             EEeeCCCCEEEEEecCCeEEEEecCC---CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956          356 QFNPIDDNYFISGSIDGKVRIWGVCE---KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF  432 (667)
Q Consensus       356 ~f~p~d~~~l~sgs~Dg~v~iwdl~~---~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~  432 (667)
                      .|.- .  +...|...|.|.+..+..   +.+....+|.+.+.+++|.|....+.+|..|..+.+||+..++........
T Consensus       162 ~~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g  238 (404)
T KOG1409|consen  162 QFDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG  238 (404)
T ss_pred             ceee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence            5543 2  556666667766655433   345568889999999999999999999999999999999877655432222


Q ss_pred             ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956          433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~  471 (667)
                            |...|..++..+- ...+++++.||.|.+||..
T Consensus       239 ------h~~kV~~l~~~~~-t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  239 ------HNDKVQALSYAQH-TRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             ------chhhhhhhhhhhh-heeeeeccCCCeEEEEecc
Confidence                  2467777777665 4789999999999999853

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.14  E-value=1.9e-07  Score=98.82  Aligned_cols=235  Identities=15%  Similarity=0.188  Sum_probs=151.1

Q ss_pred             cceEEEEecCCC-eEEEEeC----CCcEEEEecCCC--eE--eEEee-CCCcEEEEEEeeCCCCEEEEEec-CCeEEEEe
Q 005956          310 GDVLDLAWSNSN-YLLSCSM----DKTVRMWQVGCN--QC--LNVFD-HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWG  378 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~----Dg~I~iWd~~~~--~~--~~~~~-h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwd  378 (667)
                      .....|+++|++ +|++...    ++.|..|++...  ++  +.... .......++++| ++++|+++.. +|.|.+++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEE
Confidence            445668889988 7776665    579999998764  33  33333 455667899999 8888888874 89999999


Q ss_pred             cCC-CeEEEe---c-----------ccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          379 VCE-KRVVDW---A-----------DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       379 l~~-~~~~~~---~-----------~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +.. +.+...   .           .....+.++.++|+|+++++... ...|.+|++.............  ....+..
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~--~~~~G~G  193 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI--KVPPGSG  193 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE--ECSTTSS
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc--ccccCCC
Confidence            987 443321   1           12345789999999998888653 4589999998766322211100  1123466


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECC--cc----eeeEEeC----CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGV--DV----IHKFKGL----PKSGSQMSASFTTTGKHIISIG-DDCRVYVWN  511 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~----~~~~~~~----~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd  511 (667)
                      -..+.|+|++...+++.-.++.|.+++..  ..    .+.....    ........++++|||++|+++. ..+.|.+|+
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~  273 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD  273 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence            78999999985566666778889999865  21    1122211    1123678899999999998876 457899999


Q ss_pred             cCC--CCccccc--c-ccCccceeEEccCCcEEEEecCCCC
Q 005956          512 YDE--LCFPSSK--Q-KNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       512 ~~~--~~~~~~~--~-~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      ++.  +......  . .......+.|+|+|.+|+++-....
T Consensus       274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~  314 (345)
T PF10282_consen  274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN  314 (345)
T ss_dssp             ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred             EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence            943  3332221  1 1223456799999999999765544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=8e-09  Score=112.16  Aligned_cols=208  Identities=9%  Similarity=0.013  Sum_probs=132.0

Q ss_pred             CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCE--E-EEEecC--CeEEEEecCCCeEEEecccCCceEEEEEeeCCC
Q 005956          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--F-ISGSID--GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK  404 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~--l-~sgs~D--g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~  404 (667)
                      +.|.+.|.+.+...........+..-+|+| |++.  + ++...+  ..|.+.++.+++...+....+......|+|||+
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            367777887666655545556677889999 8764  3 233333  358888999888777666677777889999999


Q ss_pred             EEEEEec-CC----cEEEEEecCCcc-eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCc---c
Q 005956          405 GFIVGSI-TG----TCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD---V  473 (667)
Q Consensus       405 ~l~~gs~-dg----~i~l~d~~~~~~-~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw--d~~~---~  473 (667)
                      .|+..+. +|    .+.+|++..+.. ....+. ..    .........|+|||..++++...+|...||  ++..   .
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~----~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-NE----AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEee-cC----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence            9887653 23    233466554211 111111 11    112346789999985455555566755555  4421   1


Q ss_pred             eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCC
Q 005956          474 IHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       474 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ...+..  +...+....|||||++|+..+.+   ..|++||+.+++...............|+|||+.|++....
T Consensus       319 ~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        319 PRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             eEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC
Confidence            222222  33456788999999999876543   47999999988765443333334457899999999876553

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=2.1e-09  Score=119.54  Aligned_cols=190  Identities=13%  Similarity=0.165  Sum_probs=151.5

Q ss_pred             EEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEE-----EEEEeeCCCCEEEEEecCCeEEEEecCCC-eEEEe
Q 005956          315 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-----CVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDW  387 (667)
Q Consensus       315 l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~-----~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~-~~~~~  387 (667)
                      ..+...+ .++....+..+.+||...+..+....+....+     -+.+++ +.-++++|+.-+.|.+|+.... .....
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l  171 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRL  171 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCccee
Confidence            3333344 88888889999999999888777776554322     234455 6778999999999999998743 34468


Q ss_pred             cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956          388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  467 (667)
Q Consensus       388 ~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i  467 (667)
                      .+|.+.|.++.++-||+++++.+.|.++++|++.+.+...      ..--.|..+|..+.|.|+   .+++++.|.+.++
T Consensus       172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcrv  242 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCRV  242 (967)
T ss_pred             cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC------cccccccceeEEEEeccc---eeEEeccceEEEE
Confidence            8999999999999999999999999999999999877653      123345689999999996   8999999999999


Q ss_pred             EECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          468 LDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       468 wd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      |+.. .....+..+ ....+..++..++...++|++.|+.+++|++...
T Consensus       243 W~~~~~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  243 WGVNGTQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             Eecccceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            9755 233355553 4567899999999999999999999999998653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.08  E-value=7.2e-07  Score=89.39  Aligned_cols=254  Identities=16%  Similarity=0.248  Sum_probs=170.9

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      -++.+..+-|+|+|++++|.++-.+   |.|..|.++..                  +|.+.+..               
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~------------------~G~Lt~ln---------------   82 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD------------------DGRLTFLN---------------   82 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC------------------CCeEEEee---------------
Confidence            3677889999999999999998654   66777777631                  11111110               


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeC-CCcEEEEecCC-CeE---eEEeeCCCc----------EEEEEEee
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGC-NQC---LNVFDHHNY----------VTCVQFNP  359 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~-~~~---~~~~~h~~~----------V~~l~f~p  359 (667)
                            ...+.|+  +-..+++++++ +|+++.. -|.|.++-+.. |..   +..+.|...          +....|.|
T Consensus        83 ------~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP  154 (346)
T COG2706          83 ------RQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP  154 (346)
T ss_pred             ------ccccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence                  1111222  22778899999 6666654 57999999865 433   344456655          88999999


Q ss_pred             CCCCEEEEEecC-CeEEEEecCCCeEEE----ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeec
Q 005956          360 IDDNYFISGSID-GKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFH  433 (667)
Q Consensus       360 ~d~~~l~sgs~D-g~v~iwdl~~~~~~~----~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~  433 (667)
                       +++++++.... ..|.+|++..+++..    ..........|.|+|++++..+.+ -+++|.+|...........++..
T Consensus       155 -~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i  233 (346)
T COG2706         155 -DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI  233 (346)
T ss_pred             -CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence             99999887643 469999999887653    234556689999999999987765 58899999998753333322221


Q ss_pred             cc---cCcCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCc--ceeeEEe--CCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          434 DR---KKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVD--VIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       434 ~~---~~~~~~~I~~l~~sp~g~~~l~~~s~-dg~I~iwd~~~--~~~~~~~--~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      ..   .-........|..+++| ++|.++.. ...|.+|.+..  ....+..  ..+........|++.|++|+++..++
T Consensus       234 ~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         234 DTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             ccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            11   11234567789999997 66666643 44788886542  2222221  22445578899999999999998764


Q ss_pred             -cEEEEEcCCC
Q 005956          506 -RVYVWNYDEL  515 (667)
Q Consensus       506 -~I~iWd~~~~  515 (667)
                       .|.+|.++..
T Consensus       313 d~i~vf~~d~~  323 (346)
T COG2706         313 DNITVFERDKE  323 (346)
T ss_pred             CcEEEEEEcCC
Confidence             6888887654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.07  E-value=3.5e-07  Score=95.00  Aligned_cols=248  Identities=13%  Similarity=0.073  Sum_probs=147.1

Q ss_pred             EcCCCCEEEEEEC----------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          230 FSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       230 fspdg~~Latgs~----------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +||||+.|+.+..          +..|.|||+.++........+                                   .
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p-----------------------------------~   97 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP-----------------------------------E   97 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-----------------------------------C
Confidence            9999998887765          789999999985443211100                                   0


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEe-C-CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-M-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~-Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      +|..  . .......++++||| +|+... . +..|.+.|+.+++.+..+.-.+...-...++ +..+  .-+.||....
T Consensus        98 ~p~~--~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~~~--~~~~Dg~~~~  171 (352)
T TIGR02658        98 GPRF--L-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN-DTFF--MHCRDGSLAK  171 (352)
T ss_pred             Cchh--h-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC-CccE--EEeecCceEE
Confidence            0000  0 11233467889999 666554 3 7899999999999999887544333333332 2222  2234555544


Q ss_pred             EecCC-CeEEE----eccc-CCce-EEEEEee-CCCEEEEEecCCcEEEEEecCCcceee-eEeecccc----CcCCCCe
Q 005956          377 WGVCE-KRVVD----WADV-RDVI-SAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRK----KTSGNKI  443 (667)
Q Consensus       377 wdl~~-~~~~~----~~~~-~~~v-~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~----~~~~~~I  443 (667)
                      ..+.+ ++...    .... ...+ ..-.|.+ +|+++.+... |+|.+.|+.+...... .+......    .-..+.+
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence            33322 22111    1111 0000 0014456 8888877776 9999999765443322 22221110    0123445


Q ss_pred             EEEEEccCCCeEEEEE---------eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEc
Q 005956          444 TGIQFSRDESQRIMIT---------SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNY  512 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~---------s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~Dg~I~iWd~  512 (667)
                      ..++++|+++..++..         ...+.|.++|..+........ -...+..++++||++ +|++.. .++.|.|.|.
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            5599999975444433         122589999988655544443 356789999999999 888776 5788999999


Q ss_pred             CCCCcccc
Q 005956          513 DELCFPSS  520 (667)
Q Consensus       513 ~~~~~~~~  520 (667)
                      .+++....
T Consensus       330 ~t~k~i~~  337 (352)
T TIGR02658       330 ETGKELSS  337 (352)
T ss_pred             cCCeEEee
Confidence            98865433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.03  E-value=2.2e-07  Score=109.01  Aligned_cols=281  Identities=11%  Similarity=0.202  Sum_probs=170.2

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC-----CccccCCCCeEEecccCCCCcee--ecCCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG-----GFGSNAKEGKIKFGKKKSSHVPV--VIPDE  293 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  293 (667)
                      -...|.+++||||+..||..+.+++|.+..-.=.........++.     .+..+......-+ ....+....  ...+.
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF-~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF-HGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc-CcchhhhhhhhccCCC
Confidence            356899999999999999999999988874331111111111111     0111111000000 000000000  00000


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeC---C---CcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEE
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---D---KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~---D---g~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l  365 (667)
                      +   .......+. +...-..|+|-.|| +++..+.   .   ..+|||+-+ |....+-. -.+--.+++|.| .|++|
T Consensus       198 ~---~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lI  271 (928)
T PF04762_consen  198 V---PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLI  271 (928)
T ss_pred             C---CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEE
Confidence            0   001112233 55566789999999 7776664   2   578999876 54433332 222345789999 99999


Q ss_pred             EEEec---CCeEEEEecCCCeEEE----ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccC
Q 005956          366 ISGSI---DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKK  437 (667)
Q Consensus       366 ~sgs~---Dg~v~iwdl~~~~~~~----~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~  437 (667)
                      ++...   ...|.+|.-++-+--.    .......|..++|++|+..||+...+. |.+|-..+...-.+ .+.+...  
T Consensus       272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~--  348 (928)
T PF04762_consen  272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS--  348 (928)
T ss_pred             EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC--
Confidence            88765   3567788755533222    224456799999999999999977664 99999988776555 3433322  


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC-----------------------Ccce-------------eeEEeCC
Q 005956          438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDG-----------------------VDVI-------------HKFKGLP  481 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~-----------------------~~~~-------------~~~~~~~  481 (667)
                         ..+..+.|+|.....|.+...+|.+..++.                       .+..             ..+.. .
T Consensus       349 ---~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~  424 (928)
T PF04762_consen  349 ---ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-E  424 (928)
T ss_pred             ---CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-c
Confidence               345559999987777777777666655431                       1100             00011 1


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          482 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       482 ~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      -..+|.+++|++++..+++-..||.|.+|.....
T Consensus       425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            3568999999999988999999999999986543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=2.2e-09  Score=119.45  Aligned_cols=148  Identities=24%  Similarity=0.437  Sum_probs=125.7

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeec
Q 005956          228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG  307 (667)
Q Consensus       228 v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  307 (667)
                      +-++++.-|+++|+.-+.|.+|+...                                            ...+. .+.|
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~--------------------------------------------dn~p~-~l~G  173 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHE--------------------------------------------DNKPI-RLKG  173 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccc--------------------------------------------cCCcc-eecc
Confidence            44577777999999999999998863                                            12233 6789


Q ss_pred             cccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE--EeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956          308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~--~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~  384 (667)
                      |.+.|.++.|+.+| ++++.|.|.++|+|++++.+...  .|+|+..|+.+.|.| +  .+++++.|.+.++|+....++
T Consensus       174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l  250 (967)
T KOG0974|consen  174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQL  250 (967)
T ss_pred             cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEeccccee
Confidence            99999999999999 99999999999999999988765  567999999999998 4  999999999999998777766


Q ss_pred             EEeccc-CCceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956          385 VDWADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (667)
Q Consensus       385 ~~~~~~-~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~  423 (667)
                      ..+..| ...+..+++.++...+++++.||.+++|++...
T Consensus       251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            655555 356899999998889999999999999998643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.00  E-value=1.1e-07  Score=98.41  Aligned_cols=266  Identities=13%  Similarity=0.151  Sum_probs=173.2

Q ss_pred             cEEEEEEcCCCCEEEEEECCCc---------------EEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956          224 CIWTLKFSPDGRYLASGGEDGV---------------VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  288 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~---------------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (667)
                      .|.-+.|||.++||.|-+..+.               +.|||+.++..                                
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i--------------------------------  120 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI--------------------------------  120 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee--------------------------------
Confidence            4888999999999999765443               66666665322                                


Q ss_pred             ecCCCcccccCCcceeeeccccc--eE-EEEecCCC-eEEEEeCCCcEEEEecCCCeEe-EEee--CCCcEEEEEEeeC-
Q 005956          289 VIPDEVFQIEESPLQELHGHKGD--VL-DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-NVFD--HHNYVTCVQFNPI-  360 (667)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~gh~~~--V~-~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~-~~~~--h~~~V~~l~f~p~-  360 (667)
                                   +..+.+-..+  .+ -+.|+.+. ++|-- ....+.|+++ ++..- .-+.  ....|....|+|. 
T Consensus       121 -------------v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~  185 (561)
T COG5354         121 -------------VFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG  185 (561)
T ss_pred             -------------EeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence                         2223322222  33 56777766 33322 3346899997 33222 1121  2356788888884 


Q ss_pred             CCCEEEE-----EecCCeEEEEecCCCeEEEecc-cCCceEEEEEeeCCCEEEEEec-----------CCcEEEEEecCC
Q 005956          361 DDNYFIS-----GSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSI-----------TGTCHFYKASGN  423 (667)
Q Consensus       361 d~~~l~s-----gs~Dg~v~iwdl~~~~~~~~~~-~~~~v~~v~~spdg~~l~~gs~-----------dg~i~l~d~~~~  423 (667)
                      +...|+.     .+..+.+++|.+..+.++.... .+..-..+.|++.|+++++-..           ..+++|+++...
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~  265 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER  265 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence            3334443     3467889999998776654322 2222346789999988776321           246788888755


Q ss_pred             cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE-eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956          424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs  502 (667)
                      ......        ...++|..++|.|.+..+.++. -.+..+.++|++..+. +..  ..+.-..+.|+|.++|++.++
T Consensus       266 ~i~V~~--------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~-~~~--Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         266 SIPVEK--------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR-FYF--PEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             ccceec--------cccccceeeeecccCCceeEEecccccceeecccccceE-Eec--CCcccccccccCcccEEEEec
Confidence            554331        1137899999999875554444 5678899999875532 333  344556788999999999987


Q ss_pred             CC---CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCC
Q 005956          503 DD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       503 ~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      -|   |.|-|||..+.......-.....+.+.|+|||+++-++.....
T Consensus       335 F~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k  382 (561)
T COG5354         335 FDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK  382 (561)
T ss_pred             CCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence            65   6899999988765554445566677799999999988765443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.99  E-value=1.5e-08  Score=98.44  Aligned_cols=249  Identities=20%  Similarity=0.350  Sum_probs=162.8

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      ....|+++.|...|.|||||...|.|.+|.-.... .|                                       +.+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~c---------------------------------------eyk   64 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GC---------------------------------------EYK   64 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeeccccc-cc---------------------------------------chh
Confidence            45679999999999999999999999999765421 00                                       112


Q ss_pred             cceeeeccc------------cceEEEEecCCC---eEEEEeCCCcEEEEecCCCe------------------------
Q 005956          301 PLQELHGHK------------GDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ------------------------  341 (667)
Q Consensus       301 ~~~~l~gh~------------~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~------------------------  341 (667)
                      ...+|++|.            ..|..+.|..++   .++..+.|++|++|.+....                        
T Consensus        65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~  144 (460)
T COG5170          65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST  144 (460)
T ss_pred             hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCH
Confidence            223333332            458888887654   78888999999999864220                        


Q ss_pred             -------------Ee-----EEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC----eEEEeccc-----CC
Q 005956          342 -------------CL-----NVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVDWADV-----RD  392 (667)
Q Consensus       342 -------------~~-----~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~----~~~~~~~~-----~~  392 (667)
                                   .+     +.+  .|...|.++.|+. |...++++ .|=.|.+|++.--    .++.+.++     ..
T Consensus       145 ~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLte  222 (460)
T COG5170         145 KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTE  222 (460)
T ss_pred             HHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHH
Confidence                         00     111  2666788899987 66677665 5778999987642    23444443     34


Q ss_pred             ceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcce-----eeeEeeccc----cCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          393 VISAICYIPD-GKGFIVGSITGTCHFYKASGNDLK-----LEKVDFHDR----KKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       393 ~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~-----~~~~~~~~~----~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                      .|++..|+|. .+.+...+..|.|++-|++...+.     .......+.    .......|..+.|+++| +++++-+ -
T Consensus       223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd-y  300 (460)
T COG5170         223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD-Y  300 (460)
T ss_pred             HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-c
Confidence            5899999994 467777889999999999843322     111111110    11123568899999996 5555544 4


Q ss_pred             CcEEEEECC---cceeeEEeCC----------CCCCe---EEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          463 SKLRILDGV---DVIHKFKGLP----------KSGSQ---MSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       463 g~I~iwd~~---~~~~~~~~~~----------~~~~v---~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      .+|+|||.+   .++.+...+.          ....|   ..+.||-|.+++.+|+..+..-||-..
T Consensus       301 ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         301 LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            689999976   3333332210          11122   357889999999999998888888643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.97  E-value=5.1e-08  Score=94.40  Aligned_cols=198  Identities=14%  Similarity=0.163  Sum_probs=135.8

Q ss_pred             ceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE--Eee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-CeEE
Q 005956          311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVV  385 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~--~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~~~  385 (667)
                      ...++.|++.+ .++++-.+|.+.+-+.......+  ..+ |..+++...|+..+.+++++|+.|+.+..||++- ++.+
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            35678888888 88899899999866665554444  343 8899999999988889999999999999999993 3322


Q ss_pred             --EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          386 --DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       386 --~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                        ....|...|.++.-+| .+.+|++|+.|..|++||.++...+..       .....+.|..+.++|.....++.+..-
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-------~~~v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-------KAKVGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-------cCccccceEEEEecchhhhHHHHHHHh
Confidence              2445777788888777 678999999999999999996655443       112247899999999754344555544


Q ss_pred             CcEEEEECCcceeeE-----EeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEE-EEEcCCC
Q 005956          463 SKLRILDGVDVIHKF-----KGLPKSGSQMSASFTTTGKHIISIG-DDCRVY-VWNYDEL  515 (667)
Q Consensus       463 g~I~iwd~~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~-iWd~~~~  515 (667)
                      +-.+|.+..+....+     ....|.+-+....|.....+|||++ .|+.++ +|-.-++
T Consensus       276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            556666654322111     1112444455555544445688865 466644 7755444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=5.4e-07  Score=107.77  Aligned_cols=206  Identities=13%  Similarity=0.138  Sum_probs=136.1

Q ss_pred             ceEEEEecCCC-eEEEE-eCCCcEEEEecCCCeEeEEeeC-----------------CCcEEEEEEeeCCCCEEEEEecC
Q 005956          311 DVLDLAWSNSN-YLLSC-SMDKTVRMWQVGCNQCLNVFDH-----------------HNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~s~-s~Dg~I~iWd~~~~~~~~~~~h-----------------~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                      ....+++.+++ .|+.+ ...+.|+++|..++........                 -...+.++|+|.++.++++.+.+
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            45778888876 55444 4567899999887654332110                 12346899999556677777788


Q ss_pred             CeEEEEecCCCeEEEeccc---------------CCceEEEEEeeCCCEEE-EEecCCcEEEEEecCCcceeeeE-----
Q 005956          372 GKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKV-----  430 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~---------------~~~v~~v~~spdg~~l~-~gs~dg~i~l~d~~~~~~~~~~~-----  430 (667)
                      +.|++||..++.+..+...               -.....++++|+|+.|+ +-+.++.|++||+.++......-     
T Consensus       705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~  784 (1057)
T PLN02919        705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF  784 (1057)
T ss_pred             CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence            9999999988765432211               12356799999998555 45567899999998654321100     


Q ss_pred             -----eeccc----cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEeCC------------CCCCeEE
Q 005956          431 -----DFHDR----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLP------------KSGSQMS  488 (667)
Q Consensus       431 -----~~~~~----~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~------------~~~~v~~  488 (667)
                           .+...    .........+++++++| .++++-..++.|++||..... ..+.+.+            .......
T Consensus       785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             CcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence                 00000    00011234688999986 677788889999999976432 2222211            1225678


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          489 ASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       489 v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      ++++++|+.+++-+.++.|++||+.++..
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999999888888899999999988754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.95  E-value=1.6e-07  Score=89.89  Aligned_cols=190  Identities=12%  Similarity=0.082  Sum_probs=132.6

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe--EE--EecccCCceEE
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VV--DWADVRDVISA  396 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~--~~--~~~~~~~~v~~  396 (667)
                      .+..++.|.++++.+++.+....... ..-.+..+++++ +++++++.+....|..|.+....  .+  ......+.-.+
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY  208 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence            57888999999999987554332222 112378899999 99999999999999999987643  22  23344455567


Q ss_pred             EEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCccee
Q 005956          397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGVDVIH  475 (667)
Q Consensus       397 v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~-~~l~~~s~dg~I~iwd~~~~~~  475 (667)
                      ..|+.....+|+++.||++.|||++....+.....  ..+..|.+.+..+.|++.|. .+|+.+-.-+.+.+.|+++...
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            88999999999999999999999997765543222  12344789999999998654 3566666678999999885432


Q ss_pred             e--EEeC------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          476 K--FKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       476 ~--~~~~------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      .  +...      .....|....|+.++.-+.+.+++ .++=|++...
T Consensus       287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             eeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence            2  1111      123447778888887777776654 3555665543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.94  E-value=2.4e-06  Score=85.70  Aligned_cols=236  Identities=12%  Similarity=0.168  Sum_probs=157.3

Q ss_pred             eccccceEEEEecCCC-eEEEEeC---CCcEEEEecCC--CeEeEEe--e-CCCcEEEEEEeeCCCCEEEEEec-CCeEE
Q 005956          306 HGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGC--NQCLNVF--D-HHNYVTCVQFNPIDDNYFISGSI-DGKVR  375 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~-~l~s~s~---Dg~I~iWd~~~--~~~~~~~--~-h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~  375 (667)
                      -.+...++-|+|+|++ +|.++-.   +|.|--|.++.  |+....-  . ...+...+++++ ++++++++.. -|.|.
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~  114 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVS  114 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEE
Confidence            3566778899999998 7777654   47788888775  4433222  1 333448899999 8988888875 47899


Q ss_pred             EEecCC-CeE---EEecccCCc----------eEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceee-eEeeccccCcC
Q 005956          376 IWGVCE-KRV---VDWADVRDV----------ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVDFHDRKKTS  439 (667)
Q Consensus       376 iwdl~~-~~~---~~~~~~~~~----------v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~-~~~~~~~~~~~  439 (667)
                      ++-++. |.+   +....|.+.          +....+.|++++|++... .-.|.+|++..+.+... ...+     ..
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-----~~  189 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-----KP  189 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-----CC
Confidence            998865 432   233344443          888999999999988653 34899999997776544 2222     22


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEE----------eCCCCCCeEEEEEcCCCCEEEEEeC-CCcEE
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK----------GLPKSGSQMSASFTTTGKHIISIGD-DCRVY  508 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~----------~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~  508 (667)
                      +..-..|.|+|++....+++--+++|-+|........+.          ..........+.+++||+||+++.. ...|.
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            456788999999854555566789999998654222221          1223456678889999999998753 24788


Q ss_pred             EEEcCCCC--ccccc---cccCccceeEEccCCcEEEEecCCCC
Q 005956          509 VWNYDELC--FPSSK---QKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       509 iWd~~~~~--~~~~~---~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      +|.+....  .....   ..........|++.|.+|+++--...
T Consensus       270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd  313 (346)
T COG2706         270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD  313 (346)
T ss_pred             EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence            88876542  22211   11222334589999999888755443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.94  E-value=6.9e-09  Score=120.55  Aligned_cols=191  Identities=18%  Similarity=0.298  Sum_probs=152.8

Q ss_pred             eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~  381 (667)
                      +..|-..|.++.-+|.. +.+||+.||.|++|....++.+..+.  ....|+.+.|+. .|+.+..+..||.+.+|.+..
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence            34455678888888887 99999999999999999998888875  447899999999 899999999999999999987


Q ss_pred             CeEEEecccCCceEEEEEeeCCCEEEEEe---cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          382 KRVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       382 ~~~~~~~~~~~~v~~v~~spdg~~l~~gs---~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      .....+..|....+.+.|-.  ..+++++   .++++.+||..-...... +  +   ..|.+.++++++.|. .+.+++
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~-v--~---~~H~~gaT~l~~~P~-~qllis 2353 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL-V--H---TCHDGGATVLAYAPK-HQLLIS 2353 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce-e--e---eecCCCceEEEEcCc-ceEEEe
Confidence            66777888888888888876  5566654   468999999764332211 1  1   456688999999998 589999


Q ss_pred             EeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          459 TSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       459 ~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      |+.+|.|++||++.  ..+.++.           +. ...++++|+..|.|+||++.....
T Consensus      2354 ggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             cCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccch
Confidence            99999999999874  3333332           33 567999999999999999988654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=3.5e-07  Score=95.58  Aligned_cols=282  Identities=16%  Similarity=0.246  Sum_probs=164.8

Q ss_pred             cccccEEEEEEcCCCCEEEEEEC-----------CCcEEEEEcCCCceeeeeeCCCCCccc-----cCCCCeEEecccCC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGE-----------DGVVRIWHVTSVAASCKSFTDDGGFGS-----NAKEGKIKFGKKKS  283 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~-----------Dg~I~vWdv~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  283 (667)
                      .|.+ |.-+.|||+.+||+|-+.           -..++|||+.++..........+....     -..+++ .+.....
T Consensus       248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~  325 (698)
T KOG2314|consen  248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG  325 (698)
T ss_pred             cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-eeEEecc
Confidence            3665 888999999999999763           257999999987554332222221110     001111 0111111


Q ss_pred             CCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC-----CCcEEEEecCCCeEeEEee-CCCcEEEEE
Q 005956          284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-----DKTVRMWQVGCNQCLNVFD-HHNYVTCVQ  356 (667)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~-----Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~  356 (667)
                      +...+.-.+...-++.+.+     ....|....|+|.+ .||--..     -..+.|-.+.+++.+++.. +.-.=..+.
T Consensus       326 ~sisIyEtpsf~lld~Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh  400 (698)
T KOG2314|consen  326 NSISIYETPSFMLLDKKSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH  400 (698)
T ss_pred             ceEEEEecCceeeeccccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE
Confidence            2222221111111111211     23568888999987 5543221     1356677777777766654 222223456


Q ss_pred             EeeCCCCEEEEEec----------CCeEEEEecCCCe-EEEecccCCceEEEEEeeCCCEEEEEec---CCcEEEEEecC
Q 005956          357 FNPIDDNYFISGSI----------DGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASG  422 (667)
Q Consensus       357 f~p~d~~~l~sgs~----------Dg~v~iwdl~~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~---dg~i~l~d~~~  422 (667)
                      |.. +|.+|+.--.          -..+-|+.++... .+.....+..|..++|-|.|+.+++-+.   ..++.+|-+.+
T Consensus       401 WQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  401 WQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             ecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            666 7777765321          1235666666655 3456677888999999999998887543   35889999885


Q ss_pred             CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE---eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEE
Q 005956          423 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT---SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII  499 (667)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~---s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~  499 (667)
                      .......+..-.     ....+.+.|+|.| ++++++   |..|.+.++|+.-.-.+..........+.+.|.|.|+|++
T Consensus       480 ~~~~~~lVk~~d-----k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvv  553 (698)
T KOG2314|consen  480 NIKKPSLVKELD-----KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVV  553 (698)
T ss_pred             CCCchhhhhhhc-----ccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEE
Confidence            433332221111     1457889999997 555544   5678999999773112222222334567889999999999


Q ss_pred             EEeC------CCcEEEEEcCCC
Q 005956          500 SIGD------DCRVYVWNYDEL  515 (667)
Q Consensus       500 sgs~------Dg~I~iWd~~~~  515 (667)
                      +++.      |.--+||++.+.
T Consensus       554 T~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  554 TSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             EeeehhhhccccceEEEEeecH
Confidence            9874      444567777654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=5e-07  Score=97.63  Aligned_cols=202  Identities=9%  Similarity=0.040  Sum_probs=129.1

Q ss_pred             CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCE-EEEEecC---CeEEEEecCCCeEEEecccCCceEEEEEeeCCCE
Q 005956          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY-FISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG  405 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~-l~sgs~D---g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~  405 (667)
                      ..|.+-|.+.......... ..+....|+| +++. ++..+.+   ..|+++|+.+++...+....+......|+|||+.
T Consensus       169 ~~l~~~d~dg~~~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCceeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence            4555556654443333333 4778899999 8874 6554443   5699999999988777667777778899999988


Q ss_pred             EEEEe-cC--CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCccee-eEEe
Q 005956          406 FIVGS-IT--GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIH-KFKG  479 (667)
Q Consensus       406 l~~gs-~d--g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~~~-~~~~  479 (667)
                      ++... .+  ..|.++|+.++....  +...      ........|+|||..++++....+  .|++.|+..... .+..
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~~--LT~~------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~  318 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLTQ--ITNY------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF  318 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEEE--cccC------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence            87643 33  467777876665322  1111      122345689999866666665555  567777653222 2221


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956          480 LPKSGSQMSASFTTTGKHIISIGDD---------CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       480 ~~~~~~v~~v~~spdg~~l~sgs~D---------g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .  ...  ...|+|||++|+..+..         ..|++.|++++......... ......|+|||+.++......
T Consensus       319 ~--g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        319 H--GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             C--CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccC
Confidence            1  111  24899999999877643         36888899888654433322 233468999999999876543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.90  E-value=1.1e-06  Score=85.76  Aligned_cols=188  Identities=15%  Similarity=0.199  Sum_probs=115.1

Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--------CCCcEEEEEEeeCC-----CCEEEEEecCCeEEEE
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPID-----DNYFISGSIDGKVRIW  377 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~d-----~~~l~sgs~Dg~v~iw  377 (667)
                      =..++||||+ .||.+...|+|+++|+....+. .+.        ....|..+.|.+..     ...|++-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            4568999999 8889999999999999864433 221        34567778887632     2357777788888888


Q ss_pred             ecCCCe-----E---EEec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          378 GVCEKR-----V---VDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       378 dl~~~~-----~---~~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      -+..+.     .   ..+. .....|+++.|+|..+.|++|+....      .++.           .+.....+++-..
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-----------s~a~~~GLtaWRi  187 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-----------SKASSCGLTAWRI  187 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-----------ccccccCceEEEE
Confidence            763321     1   1122 23668999999999999988875422      0000           0011123344333


Q ss_pred             ccCCCeEEEEEeCCCcE-------EEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          449 SRDESQRIMITSEDSKL-------RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I-------~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      -.+.+.+..+.+.+..+       .+|.+.....-.........|..|..||||..||+...+|.|.+|++.....
T Consensus       188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             cCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            33322333232222222       2232221111011122467899999999999999999999999999988654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=6.2e-07  Score=96.87  Aligned_cols=192  Identities=12%  Similarity=0.147  Sum_probs=126.1

Q ss_pred             ceEEEEecCCC-e-EEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE-ecC--CeEEEEecCCC
Q 005956          311 DVLDLAWSNSN-Y-LLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SID--GKVRIWGVCEK  382 (667)
Q Consensus       311 ~V~~l~~s~~~-~-l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg-s~D--g~v~iwdl~~~  382 (667)
                      .+....|+|++ . ++..+.+   ..|.++|+.+++..........+....|+| |++.++.. +.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence            77889999999 4 5544433   568899999988777666666677889999 88766543 333  56888899888


Q ss_pred             eEEEecccCCceEEEEEeeCCCEEEEEecC-C--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          383 RVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       383 ~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                      +...+...........|+|||+.|+..+.. |  .|.++|+.++....  +...+      ..  ...|+|+|...+++.
T Consensus       268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r--lt~~g------~~--~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ--VVFHG------KN--NSSVSTYKNYIVYSS  337 (419)
T ss_pred             cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe--CccCC------Cc--CceECCCCCEEEEEE
Confidence            877766655544567899999988887643 3  56677776655422  21111      11  248999985555555


Q ss_pred             eCC--------CcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCC
Q 005956          460 SED--------SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELC  516 (667)
Q Consensus       460 s~d--------g~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~~  516 (667)
                      ...        ..|.+.|+... ...+..   ........|+|||+.|+....+   ..+.+.+++...
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDYIRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCCeEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence            433        36788886533 222222   1233358899999988776543   246677776643

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.88  E-value=9.7e-09  Score=119.36  Aligned_cols=189  Identities=13%  Similarity=0.237  Sum_probs=145.0

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      ++.|-..|.+|.=+|...+-+||+.||.|++|....++.                                         
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----------------------------------------- 2242 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----------------------------------------- 2242 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe-----------------------------------------
Confidence            445667889999999999999999999999999875322                                         


Q ss_pred             cCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEe---cC
Q 005956          298 EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS---ID  371 (667)
Q Consensus       298 ~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs---~D  371 (667)
                          +..+. +-...|+.+.|+.+| .+..+..||.+.+|.+. .++.... .|......+.|-.   ..+++++   .+
T Consensus      2243 ----v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~ 2314 (2439)
T KOG1064|consen 2243 ----VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDN 2314 (2439)
T ss_pred             ----EEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCC
Confidence                22222 223789999999988 99999999999999998 3333333 3888888888864   5666654   46


Q ss_pred             CeEEEEecCC--CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          372 GKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       372 g~v~iwdl~~--~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      +.+.+||..-  +.......|.+.+++++|-|.-+.|++|+.+|.+++||++..++...              +..  +.
T Consensus      2315 ~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~--------------~~~--~~ 2378 (2439)
T KOG1064|consen 2315 RNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT--------------FQA--LD 2378 (2439)
T ss_pred             CcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH--------------hhh--hh
Confidence            7899999643  33223378899999999999999999999999999999997665432              011  22


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCcc
Q 005956          450 RDESQRIMITSEDSKLRILDGVDV  473 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~  473 (667)
                      .  ..++++++..|.|+||++...
T Consensus      2379 ~--~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2379 T--REYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             h--hheeeccCcccceEEEEcccc
Confidence            2  368999999999999997643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.87  E-value=7.3e-06  Score=85.29  Aligned_cols=219  Identities=10%  Similarity=0.057  Sum_probs=132.5

Q ss_pred             ecCCC-eEE-EEe---------CCCcEEEEecCCCeEeEEeeCC--------CcEEEEEEeeCCCCEEEEEe-c-CCeEE
Q 005956          317 WSNSN-YLL-SCS---------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGS-I-DGKVR  375 (667)
Q Consensus       317 ~s~~~-~l~-s~s---------~Dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~d~~~l~sgs-~-Dg~v~  375 (667)
                      ++||+ .|+ +.+         .+..|.+||+.+.+.+..+...        .....++++| ++++++... . +..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence            78998 444 444         5789999999999999888632        2344889999 999888766 3 68999


Q ss_pred             EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc-eeeeEee-cccc-CcCCCCeEEEEEcc-C
Q 005956          376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDF-HDRK-KTSGNKITGIQFSR-D  451 (667)
Q Consensus       376 iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~-~~~~~~~-~~~~-~~~~~~I~~l~~sp-~  451 (667)
                      +.|+.+++++......+...-+..+.+...  +-+.||......+.+... ......+ .... .....+    .|.+ +
T Consensus       132 VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~d  205 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKS  205 (352)
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCC
Confidence            999999998875554443333332222222  223455544433332211 1111111 1100 000112    4566 5


Q ss_pred             CCeEEEEEeCCCcEEEEECCc----ceeeEEeC--------CCCCCeEEEEEcCCCCEEEEEe----------CCCcEEE
Q 005956          452 ESQRIMITSEDSKLRILDGVD----VIHKFKGL--------PKSGSQMSASFTTTGKHIISIG----------DDCRVYV  509 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~--------~~~~~v~~v~~spdg~~l~sgs----------~Dg~I~i  509 (667)
                      | .++.++.. |.|.+.|+..    ....+...        -..+.+.-++++++++.++...          ..+.|.+
T Consensus       206 g-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       206 G-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             C-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            4 66666666 9999999532    11111110        0122233499999999988853          1257999


Q ss_pred             EEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956          510 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       510 Wd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      +|..+.+.............+.|+|||+.+++..+
T Consensus       284 iD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       284 VDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             EECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence            99999887666555556666799999994444333

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=7.2e-08  Score=102.99  Aligned_cols=246  Identities=15%  Similarity=0.249  Sum_probs=168.1

Q ss_pred             cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      ..+.+.+.|+|.||++.|.-+.|+.+.+.|-|...+|.|.||-+-.+...                              
T Consensus        57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~------------------------------  106 (1189)
T KOG2041|consen   57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC------------------------------  106 (1189)
T ss_pred             cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH------------------------------
Confidence            44678889999999999999999999999999999999999987653210                              


Q ss_pred             eecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE
Q 005956          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~  366 (667)
                                   .-..-....+.|.+++|+.+| .+...-.||.|.|=.++.++....--...-...+.|++ |...++
T Consensus       107 -------------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~L  172 (1189)
T KOG2041|consen  107 -------------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQAL  172 (1189)
T ss_pred             -------------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHH
Confidence                         001111245678999999999 88899999999887776554322211222344788999 888888


Q ss_pred             EEecCCeEEEEecCCCe--------EEE----ecccCCceEEEEEe--------eCCCEEEEEecCCcEEEEEecCCcce
Q 005956          367 SGSIDGKVRIWGVCEKR--------VVD----WADVRDVISAICYI--------PDGKGFIVGSITGTCHFYKASGNDLK  426 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~--------~~~----~~~~~~~v~~v~~s--------pdg~~l~~gs~dg~i~l~d~~~~~~~  426 (667)
                      .+-..|.+.+||....-        .+.    +......|..++|.        ||...++++..+|.+.+..-.+...+
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            88889999999976531        111    11222335555553        47788999999999988766544333


Q ss_pred             eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC---------CcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCC
Q 005956          427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---------SKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGK  496 (667)
Q Consensus       427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d---------g~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~  496 (667)
                      .. +.       .+..|..+.|+++| ..|++++.+         +.|.+|..- .....++.  ....|++++|-..|-
T Consensus       253 vv-~d-------tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--pg~~It~lsWEg~gL  321 (1189)
T KOG2041|consen  253 VV-VD-------TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--PGSCITGLSWEGTGL  321 (1189)
T ss_pred             eE-Ee-------cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEec--CCceeeeeEEcCCce
Confidence            21 11       12678999999997 777777654         256666633 44455554  567788888866665


Q ss_pred             EEEEEeCCCcEEE
Q 005956          497 HIISIGDDCRVYV  509 (667)
Q Consensus       497 ~l~sgs~Dg~I~i  509 (667)
                      .||.+- |+.|++
T Consensus       322 riA~Av-dsfiyf  333 (1189)
T KOG2041|consen  322 RIAIAV-DSFIYF  333 (1189)
T ss_pred             EEEEEe-cceEEE
Confidence            555442 444444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.85  E-value=7e-08  Score=93.47  Aligned_cols=198  Identities=15%  Similarity=0.174  Sum_probs=135.9

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      -.++.|++.+.-++++-.+|.+.+-+.....                                           -+.+++
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------------------------le~vq~  160 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-------------------------------------------LEKVQT  160 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceee-------------------------------------------eeeccc
Confidence            4578888888889998888888744333210                                           133567


Q ss_pred             eeccccceEEEEecCCC--eEEEEeCCCcEEEEecC-CCeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          305 LHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG-CNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~-~~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      +++|.-+++-+.|+...  .+++|+.|+.+..||++ .++.+..-  .|...|.+|.-+|..+.++++|+.|-.|++||.
T Consensus       161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt  240 (339)
T KOG0280|consen  161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDT  240 (339)
T ss_pred             ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeeh
Confidence            88999999999998655  88999999999999998 34444432  389999999999988999999999999999999


Q ss_pred             CC-CeEEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          380 CE-KRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       380 ~~-~~~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      +. ++.+......+.|..++.+|.-. .++.++...-.+|.+...+... .++.+.. .+.|.+-...-.|... ..+++
T Consensus       241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-~~~~~~s-~~~hdSl~YG~DWd~~-~~~lA  317 (339)
T KOG0280|consen  241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE-FQIVLPS-DKIHDSLCYGGDWDSK-DSFLA  317 (339)
T ss_pred             hcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc-hheeeec-cccccceeeccccccc-cceee
Confidence            94 67777677778999999999432 3344444555677777655544 1222221 2223344444444222 13566


Q ss_pred             EEe-CCCcEE-EE
Q 005956          458 ITS-EDSKLR-IL  468 (667)
Q Consensus       458 ~~s-~dg~I~-iw  468 (667)
                      +++ .|+.|+ +|
T Consensus       318 TCsFYDk~~~~~W  330 (339)
T KOG0280|consen  318 TCSFYDKKIRQLW  330 (339)
T ss_pred             eeeccccceeeee
Confidence            644 454433 44

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=2.2e-06  Score=89.77  Aligned_cols=295  Identities=11%  Similarity=0.157  Sum_probs=180.6

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCC---------ceeeeeeCCCCCccccCC------------CCeEEecccCC
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSV---------AASCKSFTDDGGFGSNAK------------EGKIKFGKKKS  283 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~---------~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~  283 (667)
                      =+-+.|||-|.||+|--.-| |.+|--.+.         ....+.|+|...++....            ...+.+|+...
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            35689999999999998877 889965432         223344455544333211            12333333322


Q ss_pred             CCceeecCCCcccccCCcceeeec--cccceE-EEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEe
Q 005956          284 SHVPVVIPDEVFQIEESPLQELHG--HKGDVL-DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN  358 (667)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~l~g--h~~~V~-~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~  358 (667)
                      +.               ....|..  ....++ -..||.|+ ++|--.. .+|.||+...-.++-.-. .-..|....|+
T Consensus       292 G~---------------lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fsws  355 (698)
T KOG2314|consen  292 GL---------------LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWS  355 (698)
T ss_pred             cc---------------hhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccC
Confidence            22               2222222  112222 35788888 5554333 689999987644332222 44678889999


Q ss_pred             eCCCCEEEEEecC-----CeEEEEecCCCeEEEecccCC-ceEEEEEeeCCCEEEEEe----------cCCcEEEEEecC
Q 005956          359 PIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGS----------ITGTCHFYKASG  422 (667)
Q Consensus       359 p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~~~~~~~-~v~~v~~spdg~~l~~gs----------~dg~i~l~d~~~  422 (667)
                      | .+++|+.=...     ..+.+..+.+++.++...... .=..+.|..+|.+|++-.          .-.++.|+.++.
T Consensus       356 P-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire  434 (698)
T KOG2314|consen  356 P-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE  434 (698)
T ss_pred             C-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence            9 77777754322     357777777777665443322 223456777888877632          223567888888


Q ss_pred             CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCcceeeEEeC--CCCCCeEEEEEcCCCCEE
Q 005956          423 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGL--PKSGSQMSASFTTTGKHI  498 (667)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~~--~~~~~v~~v~~spdg~~l  498 (667)
                      ...+...+.+.       ..|..++|-|.|.++.+..+.+  .++.+|.......+....  -.....+.+.|+|.|+++
T Consensus       435 KdIpve~velk-------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fv  507 (698)
T KOG2314|consen  435 KDIPVEVVELK-------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFV  507 (698)
T ss_pred             cCCCceeeecc-------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEE
Confidence            87777766654       5799999999987666665544  468888765322211110  023556789999999999


Q ss_pred             EEE---eCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEecC
Q 005956          499 ISI---GDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       499 ~sg---s~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      +.+   |..|.+.++|..-.......+ .....+-+.|-|.|+++.++.+
T Consensus       508 vva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  508 VVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             EEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence            876   457899999998543333322 2334455689999999888543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=7.8e-09  Score=107.09  Aligned_cols=246  Identities=13%  Similarity=0.195  Sum_probs=163.5

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.+.||+..|..++--.+.+-+++++.|.+|++|.+....-               ..+                    
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD---------------~~~--------------------  772 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD---------------EIG--------------------  772 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC---------------ccc--------------------
Confidence            356789999999998877888999999999999999874100               000                    


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeC-CCCEEEEE-
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPI-DDNYFISG-  368 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~-d~~~l~sg-  368 (667)
                         ...+..+++.|+.+|.++.|-.+. .+++  .|+-|.+||.--+..+....   ..+.+..+..-|. +..+++.| 
T Consensus       773 ---tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc  847 (1034)
T KOG4190|consen  773 ---TSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC  847 (1034)
T ss_pred             ---cceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeec
Confidence               123456778999999999998877 5544  47889999988777765432   2233333333332 33444444 


Q ss_pred             ecCCeEEEEecCCCeEEE------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SIDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +...+|+++|.+.+....      .......+.+++..+.|++++++-.+|.|.+.|.++++.... +.      .....
T Consensus       848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs-wr------pmecd  920 (1034)
T KOG4190|consen  848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS-WR------PMECD  920 (1034)
T ss_pred             cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc-CC------cccch
Confidence            788999999999876432      233456689999999999999999999999999998875432 10      00111


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEE-EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRI-LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~i-wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      ...++ .|.+ +.++.+..|..+.+ |...+.+..++..+...+..-+  -.-|.-|+++-....+.||.
T Consensus       921 llqla-apsd-q~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  921 LLQLA-APSD-QALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             hhhhc-Cchh-HHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence            12222 2332 57777888888888 8766665555543222221111  12356677777666777774

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.82  E-value=1.4e-05  Score=80.30  Aligned_cols=221  Identities=16%  Similarity=0.179  Sum_probs=145.2

Q ss_pred             EEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceee
Q 005956          227 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  305 (667)
Q Consensus       227 ~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (667)
                      ++.|.+ ++.++++--..+.|..|+..+...                                              ..+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------------------------~~~   37 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------------------------EVI   37 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------------------------EEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------------------------EEE
Confidence            467887 777777777788899998875321                                              111


Q ss_pred             eccccceEEEEec-CCCeEEEEeCCCcEEEEecCCCeEeEEee------CCCcEEEEEEeeCCCCEEEEEecC-------
Q 005956          306 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSID-------  371 (667)
Q Consensus       306 ~gh~~~V~~l~~s-~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~d~~~l~sgs~D-------  371 (667)
                      ....  ...+++. +++.|+.+..++ +.++|..+++......      .......+++.| ++++.++....       
T Consensus        38 ~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~  113 (246)
T PF08450_consen   38 DLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID  113 (246)
T ss_dssp             ESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG
T ss_pred             ecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc
Confidence            1111  6667777 677777777654 5555999887655543      234678999999 88877776543       


Q ss_pred             -CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEE-EecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEE
Q 005956          372 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       372 -g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~  448 (667)
                       |.|..++.. +++......-...+.++|+|+++.|++ -+..+.|..|++........ ...+.. .....+..-.+++
T Consensus       114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~v  191 (246)
T PF08450_consen  114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAV  191 (246)
T ss_dssp             SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEE
T ss_pred             ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceE
Confidence             568888887 666555555667899999999997764 56778899999975443121 111111 1111134788999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEE-cCCCCEEEEEe
Q 005956          449 SRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASF-TTTGKHIISIG  502 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs  502 (667)
                      ..+| ++.++....+.|.++|.. +....+..  ....+++++| .++.+.|+..+
T Consensus       192 D~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~--p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  192 DSDG-NLWVADWGGGRIVVFDPDGKLLREIEL--PVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             BTTS--EEEEEETTTEEEEEETTSCEEEEEE---SSSSEEEEEEESTTSSEEEEEE
T ss_pred             cCCC-CEEEEEcCCCEEEEECCCccEEEEEcC--CCCCEEEEEEECCCCCEEEEEe
Confidence            9986 677777788999999977 34444544  3458999999 57766666544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.82  E-value=4.8e-07  Score=95.59  Aligned_cols=183  Identities=16%  Similarity=0.211  Sum_probs=141.7

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEe------e-------------CCCCEEEEEecCCeEEEEe
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFN------P-------------IDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~------p-------------~d~~~l~sgs~Dg~v~iwd  378 (667)
                      ++|....||.+++|+..+++....|.    ..+..++..|.      |             .+...++-|...|.|.+|+
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys   86 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS   86 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence            89999999999999999999888774    33344455553      1             1455788889999999999


Q ss_pred             cCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          379 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       379 l~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      +..+++..   ...|.+.|+++.++.+-..|.+++.|+.+..|+.........       .+.....+.+++.+||| ..
T Consensus        87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~-------~~~~~~~~~sl~is~D~-~~  158 (541)
T KOG4547|consen   87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI-------WKEQKPLVSSLCISPDG-KI  158 (541)
T ss_pred             ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee-------eccCCCccceEEEcCCC-CE
Confidence            99999875   345888999999999989999999999999999987665443       11223568899999996 77


Q ss_pred             EEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCC-----CCEEEEE-eCCCcEEEEEcCC
Q 005956          456 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GKHIISI-GDDCRVYVWNYDE  514 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spd-----g~~l~sg-s~Dg~I~iWd~~~  514 (667)
                      +++++  ++|++||+.+........+|.++|.+++|..+     |+|+.++ ..+..|.+|-+..
T Consensus       159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            77776  47999998865444444449999999999777     6776654 4566788887765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.80  E-value=8.6e-07  Score=91.02  Aligned_cols=214  Identities=11%  Similarity=0.130  Sum_probs=155.0

Q ss_pred             CCCeEEEEeCCCcEEEEecCCCeEeEEe-e-----------CCCcEEEE-EEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956          319 NSNYLLSCSMDKTVRMWQVGCNQCLNVF-D-----------HHNYVTCV-QFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       319 ~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~-----------h~~~V~~l-~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      .||.-+.-+.-|.|.+||..+....+.- .           ...+..-+ .|++.+|++++..| .|+..|.+...+-.+
T Consensus       276 sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~i  354 (668)
T COG4946         276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSI  354 (668)
T ss_pred             CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeE
Confidence            4563333445577999998876543321 1           01111122 25666789988887 478888888777776


Q ss_pred             EecccCCceEEEEEeeCCCEEEEEecCC-cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc
Q 005956          386 DWADVRDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  464 (667)
Q Consensus       386 ~~~~~~~~v~~v~~spdg~~l~~gs~dg-~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~  464 (667)
                      +. ++...|.-..+.-+++.++.|..|| .+-+||..+.+....        ...-+.|.++..+|+| ++++++.....
T Consensus       355 qv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~--------e~~lg~I~av~vs~dG-K~~vvaNdr~e  424 (668)
T COG4946         355 QV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI--------EKDLGNIEAVKVSPDG-KKVVVANDRFE  424 (668)
T ss_pred             Ec-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe--------eCCccceEEEEEcCCC-cEEEEEcCceE
Confidence            64 4455588888888889999999999 899999998775432        1123789999999996 78899998899


Q ss_pred             EEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCCccccccccCccceeEEccCCcEEE
Q 005956          465 LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC----RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA  540 (667)
Q Consensus       465 I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg----~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~la  540 (667)
                      |.+.|+.+...+.......+-|+.++|||++++||-+--+|    .|+++|+.+++.-.......-.-..+|-|||++|-
T Consensus       425 l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         425 LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence            99999987666666655778899999999999999876555    69999999987644433333334468999999887


Q ss_pred             Eec
Q 005956          541 VQW  543 (667)
Q Consensus       541 v~w  543 (667)
                      .-.
T Consensus       505 fLs  507 (668)
T COG4946         505 FLS  507 (668)
T ss_pred             EEe
Confidence            643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.79  E-value=2.1e-06  Score=88.29  Aligned_cols=144  Identities=12%  Similarity=0.180  Sum_probs=117.1

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCC-cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg-~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      +|.+.|.-..+.-+++-++.|..|| .+-|+|..++                                            
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------------------------------------  392 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------------------------------------  392 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------------------------------------
Confidence            6778888888888888888888888 7888887753                                            


Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC----
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG----  372 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg----  372 (667)
                        .+..+.+.-+.|.++..+++| .++.+-....|.+.|++++.....-+ ..+-|+.+.|+| +++.|+.+--+|    
T Consensus       393 --e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq  469 (668)
T COG4946         393 --EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ  469 (668)
T ss_pred             --eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeee
Confidence              244555667889999999999 77788777889999999998755444 566899999999 999999877665    


Q ss_pred             eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe
Q 005956          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS  410 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs  410 (667)
                      .|+++|+.++++.........=.+-+|.|||++|..-+
T Consensus       470 ~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         470 SIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            58999999999988777766667788999999887654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.78  E-value=1.4e-06  Score=90.51  Aligned_cols=266  Identities=16%  Similarity=0.161  Sum_probs=170.5

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      -.-++..++|||.|.||++....| |.+|.-.....                                            
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~--------------------------------------------   65 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK--------------------------------------------   65 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhh--------------------------------------------
Confidence            456788999999999999988766 88997664221                                            


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCC---------------CcEEEEecCCCeEeEEee-CCCc--EE-EEEEeeC
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMD---------------KTVRMWQVGCNQCLNVFD-HHNY--VT-CVQFNPI  360 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---------------g~I~iWd~~~~~~~~~~~-h~~~--V~-~l~f~p~  360 (667)
                       +..+  -...|..+.|+|.+ +|.+-+..               ..+.+||+.++..+..+. ...+  .+ -+.|+- 
T Consensus        66 -l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-  141 (561)
T COG5354          66 -LVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-  141 (561)
T ss_pred             -eeee--ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-
Confidence             1111  12357777888877 66665433               249999999999999886 2222  45 678888 


Q ss_pred             CCCEEEEEecCCeEEEEecCCCeEEE--ecccC-CceEEEEEeeCC--CEEEE-----EecCCcEEEEEecCCcceeeeE
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKRVVD--WADVR-DVISAICYIPDG--KGFIV-----GSITGTCHFYKASGNDLKLEKV  430 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~-~~v~~v~~spdg--~~l~~-----gs~dg~i~l~d~~~~~~~~~~~  430 (667)
                      ++++++-. ....++|+++ +.....  ....+ ..|..+.|+|.|  ..|+.     +...+.+++|.+..+......-
T Consensus       142 ~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~  219 (561)
T COG5354         142 DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN  219 (561)
T ss_pred             cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee
Confidence            77776654 3457999997 444332  22222 568889999964  34444     4456789999988554433311


Q ss_pred             eeccccCcCCCCeEEEEEccCCCeEEEEEe----------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956          431 DFHDRKKTSGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS  500 (667)
Q Consensus       431 ~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s  500 (667)
                      -+.       ..-..+.|.+.|..+++-.-          ....++|+++...-..... ...++|...+|.|.++.+++
T Consensus       220 lfk-------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~v  291 (561)
T COG5354         220 LFK-------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAV  291 (561)
T ss_pred             eEe-------ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeE
Confidence            111       11245678887643333221          2356788887643222221 25789999999999887655


Q ss_pred             E--eCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCC
Q 005956          501 I--GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       501 g--s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      .  -.+..+.++|+.+.- . ............|+|.+.++.++--+..
T Consensus       292 i~g~~pa~~s~~~lr~Nl-~-~~~Pe~~rNT~~fsp~~r~il~agF~nl  338 (561)
T COG5354         292 ISGYMPASVSVFDLRGNL-R-FYFPEQKRNTIFFSPHERYILFAGFDNL  338 (561)
T ss_pred             Eecccccceeecccccce-E-EecCCcccccccccCcccEEEEecCCcc
Confidence            4  478899999998762 2 2222333444579999998888654443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.76  E-value=1.1e-07  Score=94.02  Aligned_cols=215  Identities=15%  Similarity=0.215  Sum_probs=150.7

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEe-cCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ-VGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd-~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~  375 (667)
                      ..+..++||.+.|++...-|.. -+++.+.|.++|||- .+.++.-..+.  ...+++++.+.+ ....|+.|-..|++.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEE
Confidence            3467788999999988887765 899999999999994 45566555554  456889999998 888899999999998


Q ss_pred             EEecCC----CeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC----------------------------
Q 005956          376 IWGVCE----KRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG----------------------------  422 (667)
Q Consensus       376 iwdl~~----~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~----------------------------  422 (667)
                      -+.+..    ... ..+..|...+..+-|+-...++++.+.|..+.---.+.                            
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~  173 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH  173 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence            886643    111 23455666666666665555655555543321110000                            


Q ss_pred             -Cc-----ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCC
Q 005956          423 -ND-----LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTG  495 (667)
Q Consensus       423 -~~-----~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg  495 (667)
                       ++     .......+..+.+.|.+.++++.|.|. ...++++..|..+.+||+. ..-..+....|...|..++.-+--
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t  252 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT  252 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh
Confidence             00     000011122235567789999999997 4899999999999999975 333344445588888888887778


Q ss_pred             CEEEEEeCCCcEEEEEcCCCC
Q 005956          496 KHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       496 ~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      +.++++++||.|-+|+.+...
T Consensus       253 ~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  253 RQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eeeeeccCCCeEEEEecccee
Confidence            899999999999999998654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=5.1e-08  Score=101.15  Aligned_cols=212  Identities=17%  Similarity=0.261  Sum_probs=145.5

Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-------CeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVFD-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-------~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                      ..-.++.+.||+..|..++--.+. -+++++.|++|++|.++.       ..|..++. |+.+|..+.|.. +.+++++ 
T Consensus       724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S-  801 (1034)
T KOG4190|consen  724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS-  801 (1034)
T ss_pred             ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee-
Confidence            334567888999999988755444 899999999999998752       34666665 999999999998 7777765 


Q ss_pred             ecCCeEEEEecCCCeEEE---ecccCCceEEEEEee--CCCEEEEE-ecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SIDGKVRIWGVCEKRVVD---WADVRDVISAICYIP--DGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~sp--dg~~l~~g-s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                       .||-|.+||.--+++..   .....+.+..+..-+  +...++.| +...+++++|.+......+ +.... ....+..
T Consensus       802 -cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E-~kVcn-a~~Pna~  878 (1034)
T KOG4190|consen  802 -CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE-LKVCN-APGPNAL  878 (1034)
T ss_pred             -ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee-EEecc-CCCCchh
Confidence             47899999987766542   223333344443334  34445554 6788999999998877655 11111 1223466


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EEcCCCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV-WNYDELC  516 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i-Wd~~~~~  516 (667)
                      +.+++..+.| +.++++-..|+|.+.|.++........+-......++ .|..+.|+....|..+.| |..-++.
T Consensus       879 ~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  879 TRAIAVADKG-NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             eeEEEeccCc-chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence            8899999986 8899999999999999886543322211222222222 366678888778888888 8776653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.70  E-value=1.4e-07  Score=101.31  Aligned_cols=276  Identities=16%  Similarity=0.238  Sum_probs=169.6

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC-------Cccc-cCCCCeEEecccCCCCceeecCCC
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG-------GFGS-NAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      .+.+.++..+|.|+-+|.++.-| +.|-|+...-.....+....       ++.. .+.+.-+.  ...+....      
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiV--sts~qkai------   94 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIV--STSNQKAI------   94 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEE--ecCcchhh------
Confidence            46788999999999999998877 45556654211111111111       0000 00000000  00000000      


Q ss_pred             cccc----cCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe-EeEEee-CCCcEEEEEEeeCCCCEE
Q 005956          294 VFQI----EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVFD-HHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       294 ~~~~----~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~p~d~~~l  365 (667)
                      +|.+    ....-..+.||...|+++.|+++.  .|++++.|-.|..||+.+.. ++..+. -......++|+-.+++.+
T Consensus        95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen   95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence            1111    122234567999999999999988  89999999999999998753 444443 344567889998666666


Q ss_pred             EEEecCCeEEEEecCCCeE--EEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          366 ISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      ++ +....|++||++.+..  .....+-..|+.++|.. ....+.+.+.||++++||........+      +..+...+
T Consensus       175 as-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~------~~vtt~~p  247 (1081)
T KOG0309|consen  175 AS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK------RTVTTNFP  247 (1081)
T ss_pred             hh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc------eeccccCc
Confidence            55 5567899999987653  33555666777777766 234678889999999999875443322      11222356


Q ss_pred             eEEEEEccCCCeEEEEE-eCCCcEEE------------EECCcceeeEEeCCCCCCeEEEEEcCCC----------CEEE
Q 005956          443 ITGIQFSRDESQRIMIT-SEDSKLRI------------LDGVDVIHKFKGLPKSGSQMSASFTTTG----------KHII  499 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~-s~dg~I~i------------wd~~~~~~~~~~~~~~~~v~~v~~spdg----------~~l~  499 (667)
                      |..-.+.|-|..+++-- -.+..+.+            +|+.+.++.|.+  |...|...-|-..+          -.|+
T Consensus       248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlWR~r~e~~~d~d~rdfQLV  325 (1081)
T KOG0309|consen  248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLWRKRKECDGDYDSRDFQLV  325 (1081)
T ss_pred             ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhhhhcccccCCCCccceeEE
Confidence            77777777543333222 22223333            234567778877  67777665553221          2599


Q ss_pred             EEeCCCcEEEEEcCCC
Q 005956          500 SIGDDCRVYVWNYDEL  515 (667)
Q Consensus       500 sgs~Dg~I~iWd~~~~  515 (667)
                      |-+.|..+++|-+.+.
T Consensus       326 TWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  326 TWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             EeecCCceEeeeccHH
Confidence            9999999999998764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=1.2e-06  Score=94.88  Aligned_cols=258  Identities=14%  Similarity=0.192  Sum_probs=171.2

Q ss_pred             cccccceeeccccccEEEEEEcCC------------CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEE
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPD------------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK  277 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspd------------g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (667)
                      ..++..|.+.-|...|+.+.|.|-            .-+||++...|.|.|||....                       
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~-----------------------   99 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA-----------------------   99 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh-----------------------
Confidence            345677888899999999999872            126788888999999998852                       


Q ss_pred             ecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCC---C--eEEEEeCCCcEEEEecCCCeEeEEee-CCCc
Q 005956          278 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS---N--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY  351 (667)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~---~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~  351 (667)
                                            ..+..+..|..+|.+++|-+.   .  .|++-..-.+|.+|+..+|+....+. ....
T Consensus       100 ----------------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i  157 (1062)
T KOG1912|consen  100 ----------------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI  157 (1062)
T ss_pred             ----------------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence                                  234566778889999999752   2  67777777899999999999988876 4456


Q ss_pred             EEEEEEeeCCCCEEEEEecCCeEEEEecCC-------CeEEEe-cccCC----------------c---------eEEEE
Q 005956          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVDW-ADVRD----------------V---------ISAIC  398 (667)
Q Consensus       352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-------~~~~~~-~~~~~----------------~---------v~~v~  398 (667)
                      ..|+.+.|-|.+.|+.-+..|.+.+-+.-.       ++..++ .+|.+                .         ...++
T Consensus       158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa  237 (1062)
T KOG1912|consen  158 LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA  237 (1062)
T ss_pred             eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence            678999998888888888888888876532       222221 11111                0         12356


Q ss_pred             EeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCcceeeE
Q 005956          399 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGVDVIHKF  477 (667)
Q Consensus       399 ~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~-~~l~~~s~dg~I~iwd~~~~~~~~  477 (667)
                      |+|.-+.++.......+.++|++-...... +.+..      +.+.-+.+-|++. ..|++...||.+.+|-.+.....+
T Consensus       238 f~p~~rn~lfi~~prellv~dle~~~~l~v-vpier------~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f  310 (1062)
T KOG1912|consen  238 FSPHWRNILFITFPRELLVFDLEYECCLAV-VPIER------GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF  310 (1062)
T ss_pred             cChhhhceEEEEeccceEEEcchhhceeEE-EEecc------CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence            788777777777888999999975544322 22221      4455566767643 478899999999999644322222


Q ss_pred             EeC-----------------CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          478 KGL-----------------PKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       478 ~~~-----------------~~~~~v~~v~~spd-g~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      +..                 .....+......|. ...++.--.+|.+.+|.+.++....
T Consensus       311 ~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~  370 (1062)
T KOG1912|consen  311 KKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHL  370 (1062)
T ss_pred             cccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence            110                 01111122222343 2334444457889999998765433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.65  E-value=1e-05  Score=96.89  Aligned_cols=228  Identities=14%  Similarity=0.085  Sum_probs=145.6

Q ss_pred             EEEEecCC-C-eEEEEeCCCcEEEEecCCCeEeEEeeC---------------CCcEEEEEEeeCCCCEEEEEe-cCCeE
Q 005956          313 LDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDH---------------HNYVTCVQFNPIDDNYFISGS-IDGKV  374 (667)
Q Consensus       313 ~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h---------------~~~V~~l~f~p~d~~~l~sgs-~Dg~v  374 (667)
                      ..+++++. + .+++-+.++.|++||... ..+..+..               -.....+++.+ +++.|+++. ..+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            45777764 5 666777788999999864 44433321               12357899998 677655554 45779


Q ss_pred             EEEecCCCeEEEeccc-----------------CCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeecc--
Q 005956          375 RIWGVCEKRVVDWADV-----------------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD--  434 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~-----------------~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~--  434 (667)
                      +.+|+.++.+..+...                 -.....++++| ++..+++.+.++.|++||..++....  +...+  
T Consensus       649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~--~~G~G~~  726 (1057)
T PLN02919        649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV--FSGDGYE  726 (1057)
T ss_pred             EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE--EecCCcc
Confidence            9999988776543211                 12356799999 56666667778899999987654321  11010  


Q ss_pred             -----c--cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceee-EEe-C-------------------CCCCCe
Q 005956          435 -----R--KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG-L-------------------PKSGSQ  486 (667)
Q Consensus       435 -----~--~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~-~~~-~-------------------~~~~~v  486 (667)
                           .  ..........++++|+|..++++-+.++.|++||+...... ..+ .                   ......
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence                 0  00112345679999997556677777899999997643211 110 0                   001234


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc--------------cCccceeEEccCCcEEEEecC
Q 005956          487 MSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK--------------NSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       487 ~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~--------------~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ..++++++|..+++-..++.|++||..++........              -.....++++++|.++++...
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence            6889999999888888899999999987754322110              012345788999986666443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=5.9e-06  Score=86.95  Aligned_cols=197  Identities=19%  Similarity=0.302  Sum_probs=132.3

Q ss_pred             cccccEEEEEEcCCCC--EEEE-----EECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          220 AHKGCIWTLKFSPDGR--YLAS-----GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~--~Lat-----gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      -|...|+...+||.+.  ++|+     +|.-+.|+||.+.......                                  
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~----------------------------------  208 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ----------------------------------  208 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc----------------------------------
Confidence            3678899999998743  5554     3556788998876311100                                  


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC--e--EEEEeCCC---------cEEEEecCCCeEeEEeeCCCcEEEEEEee
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--Y--LLSCSMDK---------TVRMWQVGCNQCLNVFDHHNYVTCVQFNP  359 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~--l~s~s~Dg---------~I~iWd~~~~~~~~~~~h~~~V~~l~f~p  359 (667)
                            ....++|  ....=..+.|++-|  +  |++...|+         ++++.++....+...+...++|+++.|+|
T Consensus       209 ------~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~  280 (566)
T KOG2315|consen  209 ------PVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSP  280 (566)
T ss_pred             ------hhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECC
Confidence                  0001111  12223446777655  3  33333343         68888888667777777899999999999


Q ss_pred             CCCCEEEE--EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec---CCcEEEEEecCCcceeeeEeecc
Q 005956          360 IDDNYFIS--GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHD  434 (667)
Q Consensus       360 ~d~~~l~s--gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~---dg~i~l~d~~~~~~~~~~~~~~~  434 (667)
                       ++..|++  |-.=.++.|||++..-+..+.  .++-+++-|+|.|++|+.++-   .|.+.+||+.+.++... +.   
T Consensus       281 -s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~-~~---  353 (566)
T KOG2315|consen  281 -SGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK-FK---  353 (566)
T ss_pred             -CCCEEEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc-cc---
Confidence             7766554  445678999999877665543  455678899999999998764   48999999998655432 11   


Q ss_pred             ccCcCCCCeEEEEEccCCCeEEEEEeC------CCcEEEEECC
Q 005956          435 RKKTSGNKITGIQFSRDESQRIMITSE------DSKLRILDGV  471 (667)
Q Consensus       435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~------dg~I~iwd~~  471 (667)
                           ...-+-+.|+||| .++++++.      |+.++||+..
T Consensus       354 -----a~~tt~~eW~PdG-e~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  354 -----AANTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             -----cCCceEEEEcCCC-cEEEEEeccccEEecCCeEEEEec
Confidence                 1345778999997 66666543      7889999854

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.60  E-value=6.9e-05  Score=75.31  Aligned_cols=215  Identities=14%  Similarity=0.112  Sum_probs=135.3

Q ss_pred             EEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc--
Q 005956          314 DLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--  389 (667)
Q Consensus       314 ~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~--  389 (667)
                      ++.|.+ ++ ++++--..+.|..|+..+++... +.... ...+++...+ ..|+.+...+ +.++|+.++++..+..  
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            567887 56 55566678899999998876644 33333 7777888415 5555555544 5666999987654332  


Q ss_pred             ----cCCceEEEEEeeCCCEEEEEecC--------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          390 ----VRDVISAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       390 ----~~~~v~~v~~spdg~~l~~gs~d--------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                          ....++.+++.|+|+..++....        |.+..++.. ++....   ...     ....+.|+|+|++..+++
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~~-----~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---ADG-----LGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EEE-----ESSEEEEEEETTSSEEEE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE---ecC-----cccccceEECCcchheee
Confidence                34568899999999966665433        345555555 232211   111     145789999999755666


Q ss_pred             EEeCCCcEEEEECC--cc----eeeEEeCCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccce
Q 005956          458 ITSEDSKLRILDGV--DV----IHKFKGLPK-SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSC  529 (667)
Q Consensus       458 ~~s~dg~I~iwd~~--~~----~~~~~~~~~-~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~  529 (667)
                      +-+..+.|..++..  ..    ...+..... .+..-.+++..+|++.++.-..+.|.+++.+ ++...... .....++
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~  229 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTN  229 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEE
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEE
Confidence            77888899999864  21    122322212 2347889999999988887788999999988 54433222 2235566


Q ss_pred             eEEc-cCCcEEEEe
Q 005956          530 EHFF-SEGVSVAVQ  542 (667)
Q Consensus       530 ~~fs-~dg~~lav~  542 (667)
                      ++|. ++...|-+.
T Consensus       230 ~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  230 CAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEESTTSSEEEEE
T ss_pred             EEEECCCCCEEEEE
Confidence            7884 565666553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.59  E-value=8.7e-06  Score=78.21  Aligned_cols=191  Identities=13%  Similarity=-0.017  Sum_probs=129.5

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE---EecccCCce
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV---DWADVRDVI  394 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~---~~~~~~~~v  394 (667)
                      +++|+.|+.-|...+|...+.+....+  .+...|+-+.=.-....-+..++.|.++++.++..+...   ....  -.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~~  161 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LTQ  161 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc--cce
Confidence            448999999999999999876544333  244433322111112234667788999998888664432   2222  238


Q ss_pred             EEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce
Q 005956          395 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI  474 (667)
Q Consensus       395 ~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~  474 (667)
                      .++++++|++++++.+....|.+|.+.........+....    ....-.+..|+..+ ..++++..||.+.|||++...
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~----t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP----TSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc----cCCCceeeeeccCc-ceEEEEecCCcEEEEEecccc
Confidence            8999999999999999999999999987655444322221    12344567788874 789999999999999987421


Q ss_pred             e-----eEEeCCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCCc
Q 005956          475 H-----KFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       475 ~-----~~~~~~~~~~v~~v~~spdg~--~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      .     .-+...|.+.+..+.|++.|.  +|...-.-+.+.+-|+.++..
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            1     112234889999999998764  344444457899999888753

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=2.4e-07  Score=91.64  Aligned_cols=151  Identities=15%  Similarity=0.226  Sum_probs=116.6

Q ss_pred             EEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          366 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      ++.+.+..|-+-|+.++-...+. ....|.++.|...++.+..|+.+|.|..+|++....-.. +.  .+..-|...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-~~--a~rlyh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-WC--AQRLYHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-cc--eEEEEcCcchhh
Confidence            55667788999999988665544 677889999999899999999999999999997622110 00  001123578899


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECC--cc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGV--DV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~--~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                      ++.-.-..++|++.+.+|+|.+||.+  ++   +..+.+|.+.....-+-+.+....|+++++|...+||.++.+.....
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            88776334799999999999999977  33   77888876666666677788889999999999999999998876443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=1.4e-07  Score=65.06  Aligned_cols=37  Identities=38%  Similarity=0.869  Sum_probs=34.9

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEE
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH  250 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWd  250 (667)
                      +.+++++|.+.|++|+|+|++.+|+||+.|+.|+|||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4578899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.55  E-value=6.6e-05  Score=80.62  Aligned_cols=185  Identities=13%  Similarity=0.093  Sum_probs=116.8

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEE------EEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCC-
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC------VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD-  392 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~------l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~-  392 (667)
                      ++.++.++.++.|..||..+++.+..+........      ...   .+..++.+..++.+..+|+.+++.+....... 
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~  221 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP  221 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence            45777788899999999999998877754332211      122   23467788889999999999987653221100 


Q ss_pred             ----c---eEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          393 ----V---ISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       393 ----~---v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                          .   +..+.-+|  .+..+++++.+|.+..||..+++..... ..        ........  .+ ..+++++.+|
T Consensus       222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~-~~--------~~~~~p~~--~~-~~vyv~~~~G  289 (377)
T TIGR03300       222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR-DA--------SSYQGPAV--DD-NRLYVTDADG  289 (377)
T ss_pred             CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee-cc--------CCccCceE--eC-CEEEEECCCC
Confidence                0   00011111  3567888889999999999887654321 11        11122222  22 4778888999


Q ss_pred             cEEEEECCcceeeEEeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956          464 KLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       464 ~I~iwd~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~  521 (667)
                      .|+.+|..+.....+... ......+...  .+.+|++++.+|.|+++|..+++.....
T Consensus       290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL  346 (377)
T ss_pred             eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            999999875544433211 1111222222  3678999999999999999998876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.54  E-value=9e-07  Score=89.53  Aligned_cols=160  Identities=14%  Similarity=0.161  Sum_probs=117.9

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      .++.+.++|.+++||.+..+....++++......                                         .+.+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~-----------------------------------------~kl~~  102 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKG-----------------------------------------AKLLD  102 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCc-----------------------------------------ceeee
Confidence            4556777889999999888888778777642110                                         01111


Q ss_pred             ee--eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          304 EL--HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       304 ~l--~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                      .+  ......+..+...... ....++....+.+|.+..+.+...++|-.-++.++|+| |+++|+++..|.+|++-...
T Consensus       103 ~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~yp  181 (390)
T KOG3914|consen  103 VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYP  181 (390)
T ss_pred             EeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecC
Confidence            11  1122334444444333 33345666778888888788888899999999999999 99999999999999998887


Q ss_pred             CCeEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce
Q 005956          381 EKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (667)
Q Consensus       381 ~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~  426 (667)
                      .--.+.  ..+|..-|..++..++ +.|++|+.|+++++||+.+++..
T Consensus       182 a~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  182 ATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             cccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            766654  5678999999998765 56999999999999999988765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.52  E-value=4.4e-05  Score=76.07  Aligned_cols=193  Identities=16%  Similarity=0.132  Sum_probs=124.0

Q ss_pred             CCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe-cccC----Cc
Q 005956          319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVR----DV  393 (667)
Q Consensus       319 ~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~-~~~~----~~  393 (667)
                      .++.+++++.++.|..||..+|+.+..+.....+......  .+..++.++.++.|+.+|..++++... ....    ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            4557888899999999999999998888644332222222  456677777888999999999987754 2211    12


Q ss_pred             eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          394 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT----SGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       394 v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~----~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      ........++..++++..++.+..+|+.+++..... ........    ....+..-....++  .+++++.++.+.-+|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d  189 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVD  189 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEE
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEEE
Confidence            223334445889999999999999999988775442 12110000    00112232333343  777777777644449


Q ss_pred             CCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          470 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       470 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      ..+....+...  ...+.. ....++..|+.++.++.|++||+.+++..+
T Consensus       190 ~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  190 LATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             TTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            88776555442  222222 245778888888899999999999987543

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.2e-06  Score=89.62  Aligned_cols=253  Identities=17%  Similarity=0.183  Sum_probs=169.7

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      -|.+.|+.+.-+ -.+++.+++.||.++.|.-.....                                          -
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------------------------------------------v   43 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------------------------------------------V   43 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------------------------------------------e
Confidence            378888877654 456999999999999997542110                                          1


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeC-CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCC----CEEEEEecCCe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD----NYFISGSIDGK  373 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~----~~l~sgs~Dg~  373 (667)
                      ..+..+..|...|.+++.+-++ .+.|.+. |+.++++|+++-..+.-+........+.|....+    .+-++.-.++.
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~  123 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK  123 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence            2356677899999999999999 7778677 9999999998776654444322222233322122    22233345788


Q ss_pred             EEEEecCCCe--E-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC-CcceeeeEeeccc-------cCcCCCC
Q 005956          374 VRIWGVCEKR--V-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDR-------KKTSGNK  442 (667)
Q Consensus       374 v~iwdl~~~~--~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~-~~~~~~~~~~~~~-------~~~~~~~  442 (667)
                      +.++|-....  . ....-|..+|.++.+.|-+..+++....|.|.-|.... .+.+...+.+..+       .......
T Consensus       124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~  203 (558)
T KOG0882|consen  124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTE  203 (558)
T ss_pred             cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccC
Confidence            9999976543  2 23445788999999999999999999999999999873 1111111111100       1122356


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeE---------------Ee----------------CCCCCCeEEE
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKF---------------KG----------------LPKSGSQMSA  489 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~---------------~~----------------~~~~~~v~~v  489 (667)
                      .+++.|+|+| ..+.+-+.|..|++++...  ..+.+               ..                .......+.+
T Consensus       204 pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~  282 (558)
T KOG0882|consen  204 PTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNA  282 (558)
T ss_pred             ccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccccee
Confidence            7899999996 7888888999999997532  11110               00                0123345678


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          490 SFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       490 ~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      .|...|++|+-|+-=| |+|.++.++..
T Consensus       283 ~fdes~~flly~t~~g-ikvin~~tn~v  309 (558)
T KOG0882|consen  283 VFDESGNFLLYGTILG-IKVINLDTNTV  309 (558)
T ss_pred             EEcCCCCEEEeeccee-EEEEEeecCeE
Confidence            8999999999887655 78888877653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=1.2e-05  Score=87.33  Aligned_cols=244  Identities=14%  Similarity=0.164  Sum_probs=163.1

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      .-.++.|+|.| +||-|+.. .|.|-|..+                                             -+.++
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s---------------------------------------------~q~iq   49 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRS---------------------------------------------LQLIQ   49 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhh---------------------------------------------hhhhh
Confidence            35678899887 67777654 577777664                                             34577


Q ss_pred             eeeccccceEEEEecC----------C-C--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC--CC-CEEE
Q 005956          304 ELHGHKGDVLDLAWSN----------S-N--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD-NYFI  366 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~----------~-~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~--d~-~~l~  366 (667)
                      .+.-|...|+.+.|.|          . .  .|+++...|.|.+||+..+..+..+. |.+++..++|-+.  +. .+|+
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence            7788999999999975          1 2  57778888999999999888877776 6678999999873  22 4566


Q ss_pred             EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcc---eeeeEeeccc--c---
Q 005956          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL---KLEKVDFHDR--K---  436 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~---~~~~~~~~~~--~---  436 (667)
                      .-....++.+|+..+|+..- ....+....|+.+.| |.+.+.+-+..|.+.+-+.-....   ..+.+.+...  .   
T Consensus       130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~  209 (1062)
T KOG1912|consen  130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH  209 (1062)
T ss_pred             EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence            66677899999999988765 444455667799999 777888888888877766542211   1111111111  0   


Q ss_pred             --------CcC------CCC---eEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956          437 --------KTS------GNK---ITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKH  497 (667)
Q Consensus       437 --------~~~------~~~---I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~  497 (667)
                              ..+      ..-   ...++|+|.- +.++.......+.|+|+.  ..............+..+--.|....
T Consensus       210 lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~  288 (1062)
T KOG1912|consen  210 LERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA  288 (1062)
T ss_pred             hhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence                    000      000   1135678874 444555566789999976  34444444333444444444455568


Q ss_pred             EEEEeCCCcEEEEEcCCC
Q 005956          498 IISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       498 l~sgs~Dg~I~iWd~~~~  515 (667)
                      |++.-.||.+.||-.+..
T Consensus       289 LfclH~nG~ltirvrk~~  306 (1062)
T KOG1912|consen  289 LFCLHSNGRLTIRVRKEE  306 (1062)
T ss_pred             EEEEecCCeEEEEEeecc
Confidence            999999999999987653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.48  E-value=0.0003  Score=83.12  Aligned_cols=286  Identities=14%  Similarity=0.217  Sum_probs=164.7

Q ss_pred             ccccEEEEEEcCCCCEEEEEEC---C---CcEEEEEcCCC----------ceeeeeeCCCCCccccCCCCeEEecccCCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGE---D---GVVRIWHVTSV----------AASCKSFTDDGGFGSNAKEGKIKFGKKKSS  284 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~---D---g~I~vWdv~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (667)
                      +.+.-..|+|-.||+|+|+.+.   .   +.||||+-+..          -..++.+.|.|.+++...        ...+
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q--------~~~~  279 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQ--------RLPD  279 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEE--------EcCC
Confidence            4455668999999999999874   2   58999987621          112233344443332211        1111


Q ss_pred             CceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE--eEEe--eCCCcEEEEEEee
Q 005956          285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVF--DHHNYVTCVQFNP  359 (667)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~--~~~~--~h~~~V~~l~f~p  359 (667)
                      ...+.+.++---..+.....+......|..|.|++++ .|+..-.| .|.+|-..+..-  .+.+  .....+..+.|+|
T Consensus       280 ~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  280 RHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP  358 (928)
T ss_pred             CcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence            1111111110000011111112345689999999999 66665555 499999987642  2222  2344566699999


Q ss_pred             CCCCEEEEEecCCeEEEEec----CCC---------eE-------EE----------------ecccCCceEEEEEeeCC
Q 005956          360 IDDNYFISGSIDGKVRIWGV----CEK---------RV-------VD----------------WADVRDVISAICYIPDG  403 (667)
Q Consensus       360 ~d~~~l~sgs~Dg~v~iwdl----~~~---------~~-------~~----------------~~~~~~~v~~v~~spdg  403 (667)
                      .+...|...+.+|.+..++.    ..+         .+       +.                .......|.+++|++++
T Consensus       359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~  438 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN  438 (928)
T ss_pred             CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence            88888888887777765543    111         11       11                11234669999999999


Q ss_pred             CEEEEEecCCcEEEEEecCCccee-------eeEeec----cccCcCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEE
Q 005956          404 KGFIVGSITGTCHFYKASGNDLKL-------EKVDFH----DRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILD  469 (667)
Q Consensus       404 ~~l~~gs~dg~i~l~d~~~~~~~~-------~~~~~~----~~~~~~~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd  469 (667)
                      ..+++-..||.+.+|.........       ..+...    .........+..+.|..++ ..++....+   ..+.+++
T Consensus       439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~  517 (928)
T PF04762_consen  439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD-TLLVLSDSDSNQSKIVLVD  517 (928)
T ss_pred             CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCC-EEEEEEecCcccceEEEEE
Confidence            889999999999999965433220       011110    0111234567888888875 555555443   5788887


Q ss_pred             CCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          470 GVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       470 ~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      ....   ..........+.+..+...++...++.-..+|.|...+.....
T Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~  567 (928)
T PF04762_consen  518 IDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL  567 (928)
T ss_pred             eccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence            6422   2222222234555555555555546666779999877766554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.47  E-value=2.6e-06  Score=81.47  Aligned_cols=145  Identities=15%  Similarity=0.204  Sum_probs=94.3

Q ss_pred             CCCeEEEEeCCCcEEEEecCCCeEeE-Eee--CCCcEEEEEEeeCCCCEEEEEe-----cCCeEEEEecCCCeEE-Eecc
Q 005956          319 NSNYLLSCSMDKTVRMWQVGCNQCLN-VFD--HHNYVTCVQFNPIDDNYFISGS-----IDGKVRIWGVCEKRVV-DWAD  389 (667)
Q Consensus       319 ~~~~l~s~s~Dg~I~iWd~~~~~~~~-~~~--h~~~V~~l~f~p~d~~~l~sgs-----~Dg~v~iwdl~~~~~~-~~~~  389 (667)
                      ++..++++..||.+-+++.+.-..+. ...  |.+. .+..... .++.+.++.     .-+..++|+++..+.. ....
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~  177 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK  177 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee-cccEEecCCcceEeeccceeeeccccccccccccc
Confidence            44589999999999999887521111 000  1111 1111111 233443332     1234667777654433 2222


Q ss_pred             cCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          390 VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       390 ~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                      ....|+++|-+|. .+.+++|+.+|.+-+||.+....+...      .+.|..+|..+-|+|.++..|+++++||.+..|
T Consensus       178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~------l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w  251 (319)
T KOG4714|consen  178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL------LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW  251 (319)
T ss_pred             ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH------HHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence            3344999999995 456778999999999999977544332      334558899999999988999999999999999


Q ss_pred             ECC
Q 005956          469 DGV  471 (667)
Q Consensus       469 d~~  471 (667)
                      |..
T Consensus       252 das  254 (319)
T KOG4714|consen  252 DAS  254 (319)
T ss_pred             cCC
Confidence            965

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.47  E-value=6.5e-05  Score=80.66  Aligned_cols=173  Identities=12%  Similarity=0.024  Sum_probs=108.6

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEeEEeeCCC-----c------E-EEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec
Q 005956          321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----Y------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  388 (667)
Q Consensus       321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-----~------V-~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~  388 (667)
                      +.++.+..++.+..+|..+++.+.......     .      + ....+   .+..++.++.++.++.||..+++.+...
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~  267 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKR  267 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence            567788888999999999998765543110     0      0 11112   3457888888999999999998876433


Q ss_pred             ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                      .... ....  ..++..+++++.+|.+..+|..+++.......+..      .........  + ..+++++.+|.|+++
T Consensus       268 ~~~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~------~~~ssp~i~--g-~~l~~~~~~G~l~~~  335 (377)
T TIGR03300       268 DASS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY------RQLTAPAVV--G-GYLVVGDFEGYLHWL  335 (377)
T ss_pred             ccCC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccC------CccccCEEE--C-CEEEEEeCCCEEEEE
Confidence            3221 1222  23567888889999999999988765433211111      112222222  2 488899999999999


Q ss_pred             ECCcceeeEEeCCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          469 DGVDVIHKFKGLPKSGSQ-MSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       469 d~~~~~~~~~~~~~~~~v-~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                      |..+.....+...+...+ .+..+. + ..|+.++.||.|+.+
T Consensus       336 d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       336 SREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             ECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            987554444432233222 222332 3 458888899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.44  E-value=7.2e-07  Score=86.97  Aligned_cols=235  Identities=14%  Similarity=0.266  Sum_probs=140.0

Q ss_pred             ccEEEEEEcCCCC--EEEEEECCCcEEEEEcCCCceeeeeeCC--CC-Ccccc---CCCCeEEecccCCCCceeecCCCc
Q 005956          223 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTD--DG-GFGSN---AKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       223 ~~I~~v~fspdg~--~Latgs~Dg~I~vWdv~~~~~~~~~~~~--~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ..|..+.|-.++.  .++..+.|.+|++|.+.......+.-..  ++ .....   .....+.+.........+      
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ii------  159 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEII------  159 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEE------
Confidence            3477777766543  5666678999999998754222111100  00 00000   001111111111111111      


Q ss_pred             ccccCCcceee-eccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEE--e-eC-----CCcEEEEEEeeCCCCE
Q 005956          295 FQIEESPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNV--F-DH-----HNYVTCVQFNPIDDNY  364 (667)
Q Consensus       295 ~~~~~~~~~~l-~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~--~-~h-----~~~V~~l~f~p~d~~~  364 (667)
                         ...|.+.+ ..|.-.|.++.|+.|...+.++.|-.|.+|+++-.. +...  + .|     ..-|++..|+|...+.
T Consensus       160 ---aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~  236 (460)
T COG5170         160 ---AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV  236 (460)
T ss_pred             ---EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence               12233333 578889999999998855555667889999986432 2221  1 22     2358899999988888


Q ss_pred             EEEEecCCeEEEEecCCCeEEE-----------------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee
Q 005956          365 FISGSIDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~-----------------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~  427 (667)
                      |...+..|.|++-|++...+..                 +......|..+.|+++|+++++-.. -++++||.+..+.+.
T Consensus       237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi  315 (460)
T COG5170         237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI  315 (460)
T ss_pred             EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence            8888999999999998543221                 1122345888999999999887554 489999999887777


Q ss_pred             eeEeeccccCc------CCCCe---EEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          428 EKVDFHDRKKT------SGNKI---TGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       428 ~~~~~~~~~~~------~~~~I---~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                      ..+.++.....      ....|   ..+.|+.|+ ..+++|+..+..-||
T Consensus       316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiy  364 (460)
T COG5170         316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIY  364 (460)
T ss_pred             eeechHHHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeee
Confidence            66654432111      11222   246677764 677777766555444

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=1.5e-07  Score=102.81  Aligned_cols=227  Identities=17%  Similarity=0.183  Sum_probs=152.2

Q ss_pred             ccccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCC
Q 005956          205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  284 (667)
Q Consensus       205 ~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (667)
                      ...-|+++...++++.|+..-+|++|+-+.++|+.|+..|.|+++++.++                              
T Consensus      1084 r~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG------------------------------ 1133 (1516)
T KOG1832|consen 1084 RQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG------------------------------ 1133 (1516)
T ss_pred             chhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc------------------------------
Confidence            34556788888899999999999999999999999999999999999873                              


Q ss_pred             CceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCC-cEEEEecCC-CeEeEEeeCCCcEEEEEEeeC
Q 005956          285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK-TVRMWQVGC-NQCLNVFDHHNYVTCVQFNPI  360 (667)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg-~I~iWd~~~-~~~~~~~~h~~~V~~l~f~p~  360 (667)
                                     .......+|...|+-+.-+.+| .++ +++... -..+|++.. +.....|.   .-.++.|+. 
T Consensus      1134 ---------------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn- 1194 (1516)
T KOG1832|consen 1134 ---------------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSN- 1194 (1516)
T ss_pred             ---------------cccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc---ccceeehhh-
Confidence                           3345567899999999999898 444 444433 577999864 33344442   345778887 


Q ss_pred             CCCEEEEEecCCeEEEEecCCCeEEEe-----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  435 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~~~~~-----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~  435 (667)
                      ....-+.|.......+||+.++.....     ......-++..|+|+.+.++   .||  .+||++........-.+   
T Consensus      1195 ~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~f--- 1266 (1516)
T KOG1832|consen 1195 SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQF--- 1266 (1516)
T ss_pred             hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhh---
Confidence            444445566667799999999875431     12223347788999887776   344  58999876432211111   


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                           ..-..=.|+|.| ..+++-+     .|||+++....-..  ..-....+.|+..|..++..
T Consensus      1267 -----t~~~~G~FHP~g-~eVIINS-----EIwD~RTF~lLh~V--P~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1267 -----TDYGGGGFHPSG-NEVIINS-----EIWDMRTFKLLHSV--PSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             -----eecccccccCCC-ceEEeec-----hhhhhHHHHHHhcC--ccccceEEEeccCccchhhh
Confidence                 111123589997 5566655     38998754322111  22334677888888766544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.41  E-value=0.00022  Score=75.75  Aligned_cols=234  Identities=13%  Similarity=0.134  Sum_probs=132.7

Q ss_pred             ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-C-----------------CCcEEEEEEeeCCCCEEEEEec
Q 005956          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-H-----------------HNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h-----------------~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                      ...+....|+|+|..++--.++.|.+++..++...+... .                 -..-..+-|+| |+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEE
Confidence            567888999999933333456789999988775544321 1                 11224678999 8888876543


Q ss_pred             CC------------------------------------eEEEEecCCCeEEEe------cccCCceEEEEEeeCCCEEEE
Q 005956          371 DG------------------------------------KVRIWGVCEKRVVDW------ADVRDVISAICYIPDGKGFIV  408 (667)
Q Consensus       371 Dg------------------------------------~v~iwdl~~~~~~~~------~~~~~~v~~v~~spdg~~l~~  408 (667)
                      |.                                    .+.++|+.+++...+      ......+..+.|.++++.|++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            31                                    234456655554221      123445888999999985555


Q ss_pred             EecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc-cCCCeEEEEEeCCCc--EEEEECCcceeeEEeC
Q 005956          409 GSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSK--LRILDGVDVIHKFKGL  480 (667)
Q Consensus       409 gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s-p~g~~~l~~~s~dg~--I~iwd~~~~~~~~~~~  480 (667)
                      .-.+     ..+.++|..++.........   ...--.....+.|. +++..+|.....+|-  |++++......+ ...
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~---~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT  276 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEET---SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT  276 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEE---SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEec---CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc
Confidence            4332     24667787765554332111   11111223355665 777788888888885  445565543322 222


Q ss_pred             CCCCCeE-EEEEcCCCCEEE-EEeCC----CcEEEEEcC-CCCccccccccCccceeEEccCCcEEEEecCCCC
Q 005956          481 PKSGSQM-SASFTTTGKHII-SIGDD----CRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       481 ~~~~~v~-~v~~spdg~~l~-sgs~D----g~I~iWd~~-~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      ...-.|. -+.++++++.|+ ++..+    ..|+.-+++ ++................|+|+|.+++..+++..
T Consensus       277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~  350 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGPD  350 (353)
T ss_dssp             -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESSS
T ss_pred             cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCCC
Confidence            2344454 467788887665 44432    356666777 5444333332222246799999999999876643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.40  E-value=2.9e-06  Score=81.08  Aligned_cols=71  Identities=18%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             ceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956          311 DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       311 ~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~  381 (667)
                      .|.+++-+|..  .++.|+.||.+.+||.+.......+  .|+.+|+.+.|+|.++..|++++.||.+..||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            48889988855  8889999999999999877443332  39999999999999999999999999999999765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.39  E-value=8e-07  Score=95.62  Aligned_cols=212  Identities=18%  Similarity=0.309  Sum_probs=144.0

Q ss_pred             eeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ..+.+|..+|+.|.|+|... .|||++.|-.+..||+.+.                                        
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp----------------------------------------  147 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP----------------------------------------  147 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCC----------------------------------------
Confidence            35779999999999998654 8999999999999999862                                        


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-EeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                          ..++..+..-......++|+-.. .+++.+..+.|++||...+. ++..++ |...|..+.|+..-...+.+.+.|
T Consensus       148 ----~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d  223 (1081)
T KOG0309|consen  148 ----HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND  223 (1081)
T ss_pred             ----CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence                23444444444556778888644 67777777889999998764 445554 888899999987566778999999


Q ss_pred             CeEEEEecCCCe--EEEecccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEee---ccccCcCCCCeE
Q 005956          372 GKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDF---HDRKKTSGNKIT  444 (667)
Q Consensus       372 g~v~iwdl~~~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~---~~~~~~~~~~I~  444 (667)
                      ++|++||.....  .........+|.--+|.|-|....+--.  +..+.+++.++..........   ......|...|.
T Consensus       224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~  303 (1081)
T KOG0309|consen  224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL  303 (1081)
T ss_pred             CceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence            999999986543  2334455666777788886655444222  224555555443332111111   111334456666


Q ss_pred             EEEEccCC---------CeEEEEEeCCCcEEEEECC
Q 005956          445 GIQFSRDE---------SQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       445 ~l~~sp~g---------~~~l~~~s~dg~I~iwd~~  471 (667)
                      .+.|-..+         ...|++=+.|..+++|-+.
T Consensus       304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             HHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            66663321         1468999999999999654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=3.7e-06  Score=86.02  Aligned_cols=207  Identities=13%  Similarity=0.157  Sum_probs=147.5

Q ss_pred             ccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe---EeEEe-eCCCcEEEEEEeeCCCCEEEEEec-CCeEEEEecCC
Q 005956          307 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCE  381 (667)
Q Consensus       307 gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~---~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~  381 (667)
                      -|.+.|+.+.-....++++++.||.++.|.-..-.   .+..+ .|...|..++.+- ++.++.+.+. |..++++|+..
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence            47888888887777799999999999999765422   22333 3777888888888 8999999777 99999999987


Q ss_pred             CeEEEecccCCceEEEEEee-CC---CEEEE-EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          382 KRVVDWADVRDVISAICYIP-DG---KGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       382 ~~~~~~~~~~~~v~~v~~sp-dg---~~l~~-gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                      -..+...........++|.. .|   ..+++ .-.+|.+.++|-.....+..     ...+.|..+|..+.+.+.+ ..+
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~-----~fkklH~sPV~~i~y~qa~-Ds~  159 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG-----YFKKLHFSPVKKIRYNQAG-DSA  159 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc-----eecccccCceEEEEeeccc-cce
Confidence            66554333333333344433 22   13444 34678999999876554322     1134466899999999985 678


Q ss_pred             EEEeCCCcEEEEECCccee---------------eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956          457 MITSEDSKLRILDGVDVIH---------------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~~~~~---------------~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                      ++....|.|..|......+               .+..........++.|+|+|..+.+-+.|..|+++++.+++....
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            8888899999998662111               111122455678999999999999999999999999999875443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.32  E-value=9.3e-06  Score=82.36  Aligned_cols=152  Identities=14%  Similarity=0.123  Sum_probs=104.3

Q ss_pred             EEEEecCCC-eEEEEeCCCcEEEEecCCC----eEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC---eEEEEecCCCeE
Q 005956          313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRV  384 (667)
Q Consensus       313 ~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~----~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg---~v~iwdl~~~~~  384 (667)
                      ..+..++.+ +|+.+..++...++++...    +++..+.....-+++.|.. +......+..-|   .+.+|....+..
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCc
Confidence            344556667 6666666666666666433    3333443444445555555 444444444444   455555555777


Q ss_pred             EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc
Q 005956          385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  464 (667)
Q Consensus       385 ~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~  464 (667)
                      ....+|-..++.++++||+++|+++..|+.|++-....... .+.+     ...|..-|..++..++  +.|++++.|++
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-Iesf-----clGH~eFVS~isl~~~--~~LlS~sGD~t  216 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-IESF-----CLGHKEFVSTISLTDN--YLLLSGSGDKT  216 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-hhhh-----ccccHhheeeeeeccC--ceeeecCCCCc
Confidence            88889999999999999999999999999999877653222 1211     2334578999999887  57999999999


Q ss_pred             EEEEECCcc
Q 005956          465 LRILDGVDV  473 (667)
Q Consensus       465 I~iwd~~~~  473 (667)
                      |++||..+.
T Consensus       217 lr~Wd~~sg  225 (390)
T KOG3914|consen  217 LRLWDITSG  225 (390)
T ss_pred             EEEEecccC
Confidence            999998754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.28  E-value=7.8e-05  Score=82.74  Aligned_cols=177  Identities=12%  Similarity=0.152  Sum_probs=136.2

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCC-cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEE
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICY  399 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~  399 (667)
                      .++-|+....+..+|+.+.+..+...-.. .|+-+..   +++++.+|...|+|.+-|.++.+.+. +..|.+.|..+. 
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD-  224 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD-  224 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee-
Confidence            67778887888899999988887776333 5666665   67899999999999999999988775 667888887665 


Q ss_pred             eeCCCEEEEEec---------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE-
Q 005956          400 IPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD-  469 (667)
Q Consensus       400 spdg~~l~~gs~---------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd-  469 (667)
                       -.|+.|++++.         |.-+++||++..+...- +.++       ..-.-+.|+|.=...+++++..|...+-| 
T Consensus       225 -v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  225 -VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             -ccCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccc-------cCchhhhhcccccceEEEEecccceeeccc
Confidence             46788888765         44678999997655322 2222       11245678887667899999999999999 


Q ss_pred             --CCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          470 --GVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       470 --~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                        +.+. ...+........+..+++|++|+.||.|..+|.|.+|.
T Consensus       296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence              4333 44455555667799999999999999999999999998

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.25  E-value=0.0013  Score=66.51  Aligned_cols=230  Identities=12%  Similarity=0.104  Sum_probs=142.7

Q ss_pred             EEEEEcC-CCCEEEEEECCCc-EEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          226 WTLKFSP-DGRYLASGGEDGV-VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       226 ~~v~fsp-dg~~Latgs~Dg~-I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      ..++.+| .+..+|.+-.-|+ ..+||..++......                                     ...+-.
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------------------------------~a~~gR   50 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------------------------------WAPPGR   50 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------------------------------cCCCCC
Confidence            4577788 5567777776664 567888765433211                                     123345


Q ss_pred             eeeccccceEEEEecCCC-eEEEEe-----CCCcEEEEecC-CCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe------
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCS-----MDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS------  369 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s-----~Dg~I~iWd~~-~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs------  369 (667)
                      .|.||      -.|++|| +|++.=     ..|.|-|||+. +.+.+..+. |.-....+.+.| |+..|+++.      
T Consensus        51 HFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Th  123 (305)
T PF07433_consen   51 HFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETH  123 (305)
T ss_pred             EEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccC
Confidence            67787      4789999 666653     34789999998 566677775 555667788999 887777653      


Q ss_pred             ------------cCCeEEEEecCCCeEEEe-----cccCCceEEEEEeeCCCEEEEEecCC-------cEEEEEecCCcc
Q 005956          370 ------------IDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGNDL  425 (667)
Q Consensus       370 ------------~Dg~v~iwdl~~~~~~~~-----~~~~~~v~~v~~spdg~~l~~gs~dg-------~i~l~d~~~~~~  425 (667)
                                  .+..+.+.|..+++++..     ..++-.|..+++.++|..++..-..|       .+-+++.... +
T Consensus       124 pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~  202 (305)
T PF07433_consen  124 PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-L  202 (305)
T ss_pred             cccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-c
Confidence                        234566677888887643     33666799999999986555433332       1222322211 1


Q ss_pred             eeeeEeeccc-cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956          426 KLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  504 (667)
Q Consensus       426 ~~~~~~~~~~-~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D  504 (667)
                        ..+..... .....+.|-+|++++++....+++=..+.+.+||..+....-..  .-.-+..++-.+++ ++++.+. 
T Consensus       203 --~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f~~ssG~-  276 (305)
T PF07433_consen  203 --RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-FLVSSGQ-  276 (305)
T ss_pred             --eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-eEEeCCC-
Confidence              11111110 11234779999999997555566667889999997754433222  33445666766666 6776654 


Q ss_pred             Cc
Q 005956          505 CR  506 (667)
Q Consensus       505 g~  506 (667)
                      |.
T Consensus       277 G~  278 (305)
T PF07433_consen  277 GQ  278 (305)
T ss_pred             cc
Confidence            44

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=3.6e-05  Score=84.44  Aligned_cols=187  Identities=16%  Similarity=0.232  Sum_probs=131.6

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      .+.|.|++++  +++||-|+.+|.|++.+...                                              .+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~----------------------------------------------~~   70 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG----------------------------------------------NP   70 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC----------------------------------------------cc
Confidence            4678888887  67999999999999998763                                              12


Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC----CCCEEEEEecCCeEEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRI  376 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~----d~~~l~sgs~Dg~v~i  376 (667)
                       .+...|...      ..+| +++||+.||+|.|-.+.+.+....+....++..++++|.    ..+.+++|+..| +.+
T Consensus        71 -~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL  142 (846)
T KOG2066|consen   71 -KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVL  142 (846)
T ss_pred             -ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEE
Confidence             222234333      3456 999999999999999999999988999999999999992    256799999888 777


Q ss_pred             EecC---CCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          377 WGVC---EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       377 wdl~---~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      +.-.   ....+......+.|.+++|.  |+++|-+..+| +++||+...+.... +............-..+.|.++. 
T Consensus       143 ~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~-i~~p~~~~R~e~fpphl~W~~~~-  217 (846)
T KOG2066|consen  143 SERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN-IPPPSQSVRPELFPPHLHWQDED-  217 (846)
T ss_pred             ehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec-cCCCCCCCCcccCCCceEecCCC-
Confidence            7532   22233455667889999995  67888887665 79999987665432 22111111122334567888763 


Q ss_pred             eEEEEEeCCCcEEEEECC
Q 005956          454 QRIMITSEDSKLRILDGV  471 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~  471 (667)
                       .|+.| ...+|+|..++
T Consensus       218 -~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  218 -RLVIG-WGDSVKICSIK  233 (846)
T ss_pred             -eEEEe-cCCeEEEEEEe
Confidence             55554 33467777655

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.23  E-value=0.00042  Score=67.94  Aligned_cols=199  Identities=13%  Similarity=0.155  Sum_probs=105.4

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      =..++||||+.+||.+...|+|+|+|+.......+...                                        ..
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~----------------------------------------~~   85 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPA----------------------------------------MS   85 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcc----------------------------------------cc
Confidence            35699999999999999999999999985322111100                                        00


Q ss_pred             ee-ccccceEEEEecCC------C-eEEEEeCCCcEEEEecCC-----CeEeEEee----CCCcEEEEEEeeCCCCEEEE
Q 005956          305 LH-GHKGDVLDLAWSNS------N-YLLSCSMDKTVRMWQVGC-----NQCLNVFD----HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       305 l~-gh~~~V~~l~~s~~------~-~l~s~s~Dg~I~iWd~~~-----~~~~~~~~----h~~~V~~l~f~p~d~~~l~s  367 (667)
                      +. .-...|..+.|.+.      . .|+.-..+|.++=|-+..     .+....|.    +...|.++.++| ..++|+.
T Consensus        86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlV  164 (282)
T PF15492_consen   86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLV  164 (282)
T ss_pred             cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEE
Confidence            00 11234455555321      1 577777888888776532     23344443    467899999999 7777777


Q ss_pred             EecCCe-EEEEecCCCeEEEecccCCceEEEEEeeCCCEEE-EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          368 GSIDGK-VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       368 gs~Dg~-v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~-~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      |+.... -..+.....-+..+.-..+......+...+..+. .....   .++.+-+..       +..........|..
T Consensus       165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~---~~~~~~~~~-------~fs~~~~~~d~i~k  234 (282)
T PF15492_consen  165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR---GLLRIPSFK-------FFSRQGQEQDGIFK  234 (282)
T ss_pred             eccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccccccc---ceeecccee-------eeeccccCCCceEE
Confidence            764322 0000000000111111111111110000000111 11111   122211111       11111222477999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCccee
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIH  475 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~  475 (667)
                      |..+||| ..|++...+|.|.+|++..+..
T Consensus       235 mSlSPdg-~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  235 MSLSPDG-SLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             EEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence            9999996 8999999999999999875543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.23  E-value=2.3e-06  Score=58.89  Aligned_cols=37  Identities=32%  Similarity=0.704  Sum_probs=34.6

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ  336 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd  336 (667)
                      +++.++.+|...|.+|+|+|++ +|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3578899999999999999998 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=9.4e-05  Score=75.14  Aligned_cols=255  Identities=11%  Similarity=0.081  Sum_probs=141.5

Q ss_pred             cccccceeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  288 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (667)
                      ..+...+.+.+|...|..|+|||..+ +|..++-+.+|+|.|+.+.                                  
T Consensus       181 ~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~----------------------------------  226 (463)
T KOG1645|consen  181 HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS----------------------------------  226 (463)
T ss_pred             CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc----------------------------------
Confidence            44555667889999999999999877 7889999999999999862                                  


Q ss_pred             ecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE-eEEee---CCCcEEEEEEeeC--
Q 005956          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-LNVFD---HHNYVTCVQFNPI--  360 (667)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~-~~~~~---h~~~V~~l~f~p~--  360 (667)
                                 ..+..+..| ..+++++|.-+.  +++.|-..|.|.|||++..+- +..+.   ...+|..++.-+.  
T Consensus       227 -----------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~  294 (463)
T KOG1645|consen  227 -----------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNK  294 (463)
T ss_pred             -----------eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccc
Confidence                       223445555 789999998766  888999999999999975432 22221   2334444433321  


Q ss_pred             ---CCCEEEEEecCCeEEEEecCCCe----EEEecccCCceEEEEEeeCCCEEEEEecCC----cEEE----EEecCCcc
Q 005956          361 ---DDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITG----TCHF----YKASGNDL  425 (667)
Q Consensus       361 ---d~~~l~sgs~Dg~v~iwdl~~~~----~~~~~~~~~~v~~v~~spdg~~l~~gs~dg----~i~l----~d~~~~~~  425 (667)
                         .+.+++..+.+  +..|.+....    .+.-....+...++.+.+-.+.+++.....    .++.    -|..++..
T Consensus       295 ~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~p  372 (463)
T KOG1645|consen  295 IFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFP  372 (463)
T ss_pred             cccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCce
Confidence               23344443332  4556543321    222233455666677777556655544321    1111    11111111


Q ss_pred             eeeeEeec-cccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC-C-CCEEEEEe
Q 005956          426 KLEKVDFH-DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-T-GKHIISIG  502 (667)
Q Consensus       426 ~~~~~~~~-~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-d-g~~l~sgs  502 (667)
                      ....-... +.+......-..+.-.+++...+.++..-+++.+||........... -..+|..++... + +.||++-.
T Consensus       373 Vc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LT  451 (463)
T KOG1645|consen  373 VCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLT  451 (463)
T ss_pred             eeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc-cCcceeecceeecCCcchhhhee
Confidence            11100000 11111001111122234432344455566789999987544333332 346777776532 2 35666665


Q ss_pred             CCCcEEEEEcCC
Q 005956          503 DDCRVYVWNYDE  514 (667)
Q Consensus       503 ~Dg~I~iWd~~~  514 (667)
                       |..++||..+.
T Consensus       452 -d~~v~Iyk~es  462 (463)
T KOG1645|consen  452 -DDRVHIYKNES  462 (463)
T ss_pred             -cceEEEEecCC
Confidence             56788887653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.00061  Score=75.65  Aligned_cols=198  Identities=20%  Similarity=0.264  Sum_probs=131.4

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      .|+|  |++.+..+|.|+.+|.|.+.+-.                                              .+.++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----------------------------------------------~~~~~   58 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS----------------------------------------------FQLIR   58 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc----------------------------------------------ceeee
Confidence            5555  56888899999999988776543                                              12345


Q ss_pred             eeeccccc-eEEEEecCCC-eEEEEeCCC-----cEEEEecCC------CeEe---EEee-----CCCcEEEEEEeeCCC
Q 005956          304 ELHGHKGD-VLDLAWSNSN-YLLSCSMDK-----TVRMWQVGC------NQCL---NVFD-----HHNYVTCVQFNPIDD  362 (667)
Q Consensus       304 ~l~gh~~~-V~~l~~s~~~-~l~s~s~Dg-----~I~iWd~~~------~~~~---~~~~-----h~~~V~~l~f~p~d~  362 (667)
                      .++.+... |..+....+. +|++.+.|+     .|+||+++.      ..|+   +.+.     ...++.+++.+. +-
T Consensus        59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l  137 (933)
T KOG2114|consen   59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DL  137 (933)
T ss_pred             hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cc
Confidence            56666666 4444433333 788877775     499999853      2344   3333     345788999998 88


Q ss_pred             CEEEEEecCCeEEEEec--CC---CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956          363 NYFISGSIDGKVRIWGV--CE---KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  437 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl--~~---~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~  437 (667)
                      +.+++|-.+|.|..+.-  ..   .+.......+.+|+.+++..+++.++.......|.+|.+.+.........      
T Consensus       138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld------  211 (933)
T KOG2114|consen  138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLD------  211 (933)
T ss_pred             cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeec------
Confidence            99999999999999842  11   12333455678999999999998855555566899999985552221222      


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEE
Q 005956          438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK  478 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~  478 (667)
                      .++....|-.|++.- ..+++++ +..+.+||.......+.
T Consensus       212 ~~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  212 NNGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGRGPCFA  250 (933)
T ss_pred             cCCccceeeecCCCC-ccEEEec-CceEEEEcCCCcceeee
Confidence            234788888888863 3244443 34689998764433333

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=2.4e-05  Score=85.75  Aligned_cols=179  Identities=16%  Similarity=0.157  Sum_probs=124.7

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee
Q 005956          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (667)
Q Consensus       348 h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~  427 (667)
                      ..+.++|++++   +..|+.|+.+|.|++++..... .....|...      .-+|.++++++.||++.|..+-+.+...
T Consensus        38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            44567788884   6899999999999999987654 333333322      5689999999999999998887765543


Q ss_pred             eeEeeccccCcCCCCeEEEEEccC----CCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          428 EKVDFHDRKKTSGNKITGIQFSRD----ESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       428 ~~~~~~~~~~~~~~~I~~l~~sp~----g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                       +..++       .++.+++++|+    ..+.+++|+.-| +.++.-+  ........+...++|.++.|.  |.+||-+
T Consensus       108 -~~df~-------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa  176 (846)
T KOG2066|consen  108 -QYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA  176 (846)
T ss_pred             -eEecC-------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe
Confidence             22232       67999999998    346789999888 7776522  111122344578999999995  7899998


Q ss_pred             eCCCcEEEEEcCCCCcccccc-------ccCccceeEEccCCcEEEEecCCCCcc
Q 005956          502 GDDCRVYVWNYDELCFPSSKQ-------KNSVRSCEHFFSEGVSVAVQWPGIGTE  549 (667)
Q Consensus       502 s~Dg~I~iWd~~~~~~~~~~~-------~~~~~~~~~fs~dg~~lav~w~~~~~~  549 (667)
                      +++| |+|||+...+......       ...-...+.|.+ ...|+++|......
T Consensus       177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i  229 (846)
T KOG2066|consen  177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKI  229 (846)
T ss_pred             cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEE
Confidence            8777 8999998876533321       111122345555 67799999886544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.15  E-value=3.7e-06  Score=89.65  Aligned_cols=230  Identities=14%  Similarity=0.182  Sum_probs=142.8

Q ss_pred             ccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEe-EEe--eCCCcEEEEEEeeCCCCEEEEEe----cCCeEEEEe
Q 005956          309 KGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL-NVF--DHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWG  378 (667)
Q Consensus       309 ~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~-~~~--~h~~~V~~l~f~p~d~~~l~sgs----~Dg~v~iwd  378 (667)
                      ...+.|+++.-+.   .++.|..+|.|-+-.+....-. ..+  ++..+.++++|++.|.+.|+.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3456777765433   7888999999999887654332 222  47788999999997777787774    346799999


Q ss_pred             cCCCeEE-----Eec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          379 VCEKRVV-----DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       379 l~~~~~~-----~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      +.++-.+     .+. .......++||..+.+.+++|.....++++|++........+.        ...+..+...|-.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--------Tk~vqG~tVdp~~  207 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--------TKYVQGITVDPFS  207 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--------hhhcccceecCCC
Confidence            9887221     111 2344567899998999999999999999999984332221111        1346667777733


Q ss_pred             CeEEEEEeCCCcEEEEE-CCcceeeEEeCCC-----CCCeEEEEEcCCCC-EEEEEeC-CCcEEEEEcCCCCcccccccc
Q 005956          453 SQRIMITSEDSKLRILD-GVDVIHKFKGLPK-----SGSQMSASFTTTGK-HIISIGD-DCRVYVWNYDELCFPSSKQKN  524 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd-~~~~~~~~~~~~~-----~~~v~~v~~spdg~-~l~sgs~-Dg~I~iWd~~~~~~~~~~~~~  524 (667)
                      ..++++.. ||.|.+|| ..+....+....+     ...+..++|.|... .+++... .++|+++++............
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~  286 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS  286 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence            34555544 99999999 3332222221111     22488999988643 3444444 478999998655433333322


Q ss_pred             CccceeE---EccCCc---EEEEecCCCC
Q 005956          525 SVRSCEH---FFSEGV---SVAVQWPGIG  547 (667)
Q Consensus       525 ~~~~~~~---fs~dg~---~lav~w~~~~  547 (667)
                      .......   |-|.++   +-..+|+..-
T Consensus       287 ~~~~~~s~~~~q~~~~~s~I~~f~wH~~s  315 (783)
T KOG1008|consen  287 VFVNYESKYPVQPNSQCSGIDFFTWHTAS  315 (783)
T ss_pred             ceeeecccccccccccccceeecCcCcCC
Confidence            2222222   555552   2223565544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.15  E-value=1.6e-06  Score=94.97  Aligned_cols=221  Identities=15%  Similarity=0.157  Sum_probs=149.9

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC--eEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG--KVR  375 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg--~v~  375 (667)
                      ++..+|+.|+...+|++|+.+. +|+.|+..|.|+++++.+|.....+. |..+|+-+.=+. ++..+++.+.-.  ...
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence            4567788899999999999877 99999999999999999998887775 999999999888 777766655433  477


Q ss_pred             EEecCC-CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          376 IWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       376 iwdl~~-~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      +|++.. +....   .-..-.++.|+..-+.-++|+......+||+.++......+..   ..+....-+...|+|.+ .
T Consensus      1171 LW~~~s~~~~~H---sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~---~~~~~y~~n~a~FsP~D-~ 1243 (1516)
T KOG1832|consen 1171 LWDASSTGGPRH---SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD---TVTSSYSNNLAHFSPCD-T 1243 (1516)
T ss_pred             HhccccccCccc---cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc---chhhhhhccccccCCCc-c
Confidence            898865 11221   1233467788877666777888889999999988765442211   11112333678899986 4


Q ss_pred             EEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEE
Q 005956          455 RIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF  532 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~f  532 (667)
                      +++-   ||  .+||.+.  .+++|...  . --..-.|+|.|.-++.-+     -|||+.+-+...... ......+.|
T Consensus      1244 LIln---dG--vLWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP-~Ldqc~VtF 1309 (1516)
T KOG1832|consen 1244 LILN---DG--VLWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP-SLDQCAVTF 1309 (1516)
T ss_pred             eEee---Cc--eeeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCc-cccceEEEe
Confidence            4432   33  4788764  33444332  1 122346899999998876     489998865432211 122334678


Q ss_pred             ccCCcEEEEe
Q 005956          533 FSEGVSVAVQ  542 (667)
Q Consensus       533 s~dg~~lav~  542 (667)
                      +..|.++-..
T Consensus      1310 NstG~VmYa~ 1319 (1516)
T KOG1832|consen 1310 NSTGDVMYAM 1319 (1516)
T ss_pred             ccCccchhhh
Confidence            8888765443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.14  E-value=0.0019  Score=68.95  Aligned_cols=289  Identities=16%  Similarity=0.159  Sum_probs=135.4

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceee-eeeCCC-----CCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-KSFTDD-----GGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      .|+.|.|+++..-||.|...|.|-||......... ....+.     ..+......+.+.-......       .. ...
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~-------~~-~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP-------PS-LKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG---------TT--SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC-------cc-ccc
Confidence            48999999999999999999999999876422111 000000     00111111222211111000       00 000


Q ss_pred             cCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee---------CCCcEEEEEEee----CCC--
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNP----IDD--  362 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~---------h~~~V~~l~f~p----~d~--  362 (667)
                      ...|...+....++|++++.|.=|+++.|..+|.+.|.|++....+..-.         ....|+++.|..    .|+  
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            12355566667899999999988899999999999999998887776532         234788888863    122  


Q ss_pred             -CEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEe--eCCCEEEEEecCCcEEEEEecCCcceeeeE-eeccccCc
Q 005956          363 -NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYI--PDGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKKT  438 (667)
Q Consensus       363 -~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~s--pdg~~l~~gs~dg~i~l~d~~~~~~~~~~~-~~~~~~~~  438 (667)
                       -.+++|...|.+.+|.+.-     .......+..+...  -++..+       .|..++..++....... .+.+.  .
T Consensus       155 Si~L~vGTn~G~v~~fkIlp-----~~~g~f~v~~~~~~~~~~~~i~-------~I~~i~~~~G~~a~At~~~~~~l--~  220 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILP-----SSNGRFSVQFAGATTNHDSPIL-------SIIPINADTGESALATISAMQGL--S  220 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE------GGG-EEEEEEEEE--SS-----------EEEEEETTT--B-B-BHHHHHGG--G
T ss_pred             ceEEEEEeCCCCEEEEEEec-----CCCCceEEEEeeccccCCCceE-------EEEEEECCCCCcccCchhHhhcc--c
Confidence             3567777778877776520     00000001111100  011111       12223333332211100 00000  0


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEE-----cCCCCEEEEEeCCCcEEEEEcC
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF-----TTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~-----spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      .+..+          .-+++...+..++|+...+.....+..........+++     ...+..|++-..+|.|++|.+.
T Consensus       221 ~g~~i----------~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP  290 (395)
T PF08596_consen  221 KGISI----------PGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP  290 (395)
T ss_dssp             GT--------------EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred             cCCCc----------CcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence            00111          12344444678999998765444444322223334444     2356778888999999999999


Q ss_pred             CCCcccccccc-----CccceeEEccCCcEEEEecC
Q 005956          514 ELCFPSSKQKN-----SVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       514 ~~~~~~~~~~~-----~~~~~~~fs~dg~~lav~w~  544 (667)
                      ..+........     .......|.++|.++....+
T Consensus       291 ~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  291 SLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             T--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred             CchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence            87764332221     11233578899996666433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.10  E-value=0.0013  Score=65.32  Aligned_cols=206  Identities=16%  Similarity=0.055  Sum_probs=121.6

Q ss_pred             CCcEEEEecCCCeEeEEeeCCCcEEEEE--EeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE
Q 005956          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF  406 (667)
Q Consensus       329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~--f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l  406 (667)
                      +++|..||..+++.+........+....  ..+ ++..+++++.++.|+.||..+++.+........+...- ..++..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence            6899999999999998886422122222  222 56778888899999999999999875444333322222 3356677


Q ss_pred             EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCC-
Q 005956          407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS-  485 (667)
Q Consensus       407 ~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~-  485 (667)
                      ++++.++.+..+|..+++........... ...........+.  + ..++++..++.|..+|..+............. 
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEE--T-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccceeeeEecccCCcceeeeecccccc-ccccccccCceEe--c-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            88888889999998888876542121110 0001112223333  2 47888888999999998866554443222211 


Q ss_pred             ---------eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956          486 ---------QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       486 ---------v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                               +..-....++ .++.++.++.+..+|+.+++.........  .......++..|.+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPISG--IYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS---ECECEECCCTEEEEEE
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCCC--ccCCceeeCCEEEEEe
Confidence                     1122222344 77777778864444999998554222111  1111445566665544

...

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.09  E-value=0.0036  Score=65.22  Aligned_cols=228  Identities=11%  Similarity=0.060  Sum_probs=117.2

Q ss_pred             EEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC-CCCEEEEEe----------------------
Q 005956          315 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGS----------------------  369 (667)
Q Consensus       315 l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~-d~~~l~sgs----------------------  369 (667)
                      ..+++++ .++-......|+-.|+.+.+....+. ....+-...|..+ ++..++-.-                      
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~  165 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR  165 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred             eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence            4445655 55555555688888999888766665 4445545666532 344433221                      


Q ss_pred             cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      ....|.-.|+.+++...+......+..+.|+|....+++=|..|     .-+||-++........+.-+    .....+.
T Consensus       166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~----~~~e~~g  241 (386)
T PF14583_consen  166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR----MEGESVG  241 (386)
T ss_dssp             --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEE
T ss_pred             CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC----CCCcccc
Confidence            12346667888888887777788889999999665555545444     24778777554433322211    1234455


Q ss_pred             EEEEccCCCeEEEEEe-C---CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---------------
Q 005956          445 GIQFSRDESQRIMITS-E---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---------------  505 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s-~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---------------  505 (667)
                      -=-|.|||..+...+. .   +..|.-+|..+.......  ........-.++||++++-=+.|.               
T Consensus       242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~  319 (386)
T PF14583_consen  242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND  319 (386)
T ss_dssp             EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE------------------
T ss_pred             cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence            5568999866555443 2   224555666654332222  122345666689999887544432               


Q ss_pred             -cEEEEEcCCCCccccc-c----------ccCccceeEEccCCcEEEEecCCCCc
Q 005956          506 -RVYVWNYDELCFPSSK-Q----------KNSVRSCEHFFSEGVSVAVQWPGIGT  548 (667)
Q Consensus       506 -~I~iWd~~~~~~~~~~-~----------~~~~~~~~~fs~dg~~lav~w~~~~~  548 (667)
                       .|++++++.+...... +          ....-....|+|||+.+...++..+.
T Consensus       320 p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~  374 (386)
T PF14583_consen  320 PWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGP  374 (386)
T ss_dssp             -EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred             cEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCC
Confidence             5677888776542111 1          11123457899999999998887664

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.07  E-value=0.0007  Score=77.88  Aligned_cols=198  Identities=12%  Similarity=0.164  Sum_probs=127.6

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      .+.|.++.|..++.-++.+..+|.|.+-|..+....                                            
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--------------------------------------------  103 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE--------------------------------------------  103 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee--------------------------------------------
Confidence            468999999999999999999999999877753221                                            


Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEec----CCCeEe-------------------EEee----------
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV----GCNQCL-------------------NVFD----------  347 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~----~~~~~~-------------------~~~~----------  347 (667)
                        ....-...|.+++|+||. .++..+.++++.+-.-    -.-+.+                   ..|.          
T Consensus       104 --ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~  181 (1265)
T KOG1920|consen  104 --IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQ  181 (1265)
T ss_pred             --eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccc
Confidence              122235679999999999 7777777777765432    000111                   1111          


Q ss_pred             ------------CCCcEEEEEEeeCCCCEEEEEe----cC-CeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEE
Q 005956          348 ------------HHNYVTCVQFNPIDDNYFISGS----ID-GKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVG  409 (667)
Q Consensus       348 ------------h~~~V~~l~f~p~d~~~l~sgs----~D-g~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~g  409 (667)
                                  ..+.=+.|.|-- ||.+|++..    .+ .+|++||-+ +.+-. .....+.-.+++|-|.|..+++-
T Consensus       182 ~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~i  259 (1265)
T KOG1920|consen  182 KIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAI  259 (1265)
T ss_pred             cccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeee
Confidence                        011123478887 898988832    23 789999987 44332 22333445689999999998884


Q ss_pred             e---cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE---EeCCCcEEEEECCc
Q 005956          410 S---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI---TSEDSKLRILDGVD  472 (667)
Q Consensus       410 s---~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~---~s~dg~I~iwd~~~  472 (667)
                      .   .++.|.+|.-++-....-.+.    .......+..++|+.++ ..|++   ......|++|-..+
T Consensus       260 q~~~sd~~IvffErNGL~hg~f~l~----~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  260 QCKTSDSDIVFFERNGLRHGEFVLP----FPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             eecCCCCcEEEEecCCccccccccC----CcccccchheeeecCCC-CceeeeecccccceEEEEEecC
Confidence            3   456789998765332211111    11122449999999984 66666   34445599998765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.06  E-value=0.0018  Score=74.65  Aligned_cols=196  Identities=10%  Similarity=0.120  Sum_probs=133.4

Q ss_pred             cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec----CC---
Q 005956          310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV----CE---  381 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl----~~---  381 (667)
                      +.|.++.|..+. .++.+..+|.|.+-|..+......-.-...|.+++|+| |+..++..+.++++.+-+-    -.   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhccc
Confidence            689999999887 78888888999999988776655555778999999999 9999999988888776532    10   


Q ss_pred             --------CeEE---------Eecc---------------------cCCceEEEEEeeCCCEEEEEe-----cCCcEEEE
Q 005956          382 --------KRVV---------DWAD---------------------VRDVISAICYIPDGKGFIVGS-----ITGTCHFY  418 (667)
Q Consensus       382 --------~~~~---------~~~~---------------------~~~~v~~v~~spdg~~l~~gs-----~dg~i~l~  418 (667)
                              ++.+         ++.+                     ..+.=+.|+|--||+++++..     ....|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                    1111         0110                     112234689999999999832     33789999


Q ss_pred             EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE---eCCCcEEEEECCccee---eEEeCCCCCCeEEEEEc
Q 005956          419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT---SEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFT  492 (667)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~---s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~s  492 (667)
                      |.. +.+....       ....+.-.+++|-|.| ..+++.   +.|+.|.+|.-+-..+   ..........+..++|+
T Consensus       228 drE-g~Lns~s-------e~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  228 DRE-GALNSTS-------EPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             ccc-chhhccc-------CcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence            987 4333211       1112344689999986 556554   3566799997443222   12222234458999999


Q ss_pred             CCCCEEEE---EeCCCcEEEEEcCCC
Q 005956          493 TTGKHIIS---IGDDCRVYVWNYDEL  515 (667)
Q Consensus       493 pdg~~l~s---gs~Dg~I~iWd~~~~  515 (667)
                      .++..||+   ......|++|-+.+-
T Consensus       299 s~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCCCceeeeecccccceEEEEEecCe
Confidence            99999988   555556999988764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.05  E-value=0.00024  Score=76.18  Aligned_cols=151  Identities=11%  Similarity=0.122  Sum_probs=99.0

Q ss_pred             CCceEEEEEee-CCCEEEEE----ecCCc----EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          391 RDVISAICYIP-DGKGFIVG----SITGT----CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       391 ~~~v~~v~~sp-dg~~l~~g----s~dg~----i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      .....++.|+- +.+.+.+.    +.+|.    -.+|++..++.+...+.    .......+.+++++|+. ..++.|..
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvt----sipL~s~v~~ca~sp~E-~kLvlGC~  279 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVT----SIPLPSQVICCARSPSE-DKLVLGCE  279 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEE----EEecCCcceEEecCccc-ceEEEEec
Confidence            33445566665 33444432    22332    35788876665543221    11224789999999995 89999999


Q ss_pred             CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc--c----cCccceeEEccC
Q 005956          462 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--K----NSVRSCEHFFSE  535 (667)
Q Consensus       462 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~----~~~~~~~~fs~d  535 (667)
                      ||.|.+||.......+..  ..-.++.++|+|+|.++++|+..|.+.+||+.-.......-  .    ....-...|...
T Consensus       280 DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~  357 (545)
T PF11768_consen  280 DGSIILYDTTRGVTLLAK--AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVS  357 (545)
T ss_pred             CCeEEEEEcCCCeeeeee--ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCc
Confidence            999999998766555543  45667899999999999999999999999987554322211  1    111122345556


Q ss_pred             CcEEEEecCCCCc
Q 005956          536 GVSVAVQWPGIGT  548 (667)
Q Consensus       536 g~~lav~w~~~~~  548 (667)
                      ....-+.|.....
T Consensus       358 ~~L~~iqW~~~~~  370 (545)
T PF11768_consen  358 SSLVHIQWAPAPQ  370 (545)
T ss_pred             chhheeEeccCCC
Confidence            6677778875543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=1.2e-05  Score=79.91  Aligned_cols=121  Identities=12%  Similarity=0.252  Sum_probs=94.7

Q ss_pred             cccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-----eEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956          308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-----QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~  381 (667)
                      ..+.|.++.|...+ .++.|...|.|...|++++     .+...+-|...|++++....++.+|++.+.+|+|++||++.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            56789999998855 9999999999999999754     57778889999999988776788999999999999999986


Q ss_pred             CeE----EEecccCCce--EEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          382 KRV----VDWADVRDVI--SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       382 ~~~----~~~~~~~~~v--~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      -+.    ....+|-..-  .-+-..+....+++++.|-..+||.+..+.+...
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            554    3344443221  1223345566788899999999999998877543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.04  E-value=0.002  Score=69.54  Aligned_cols=178  Identities=10%  Similarity=0.049  Sum_probs=108.4

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEeEEeeCCCc--------EEEEEEee-CCCCEEEEEecCCeEEEEecCCCeEEEecccC
Q 005956          321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADVR  391 (667)
Q Consensus       321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~--------V~~l~f~p-~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~  391 (667)
                      +.++.++.++.+..+|..+++.+..+....+        ...+.-.| ..+..++.++.++.+..+|+.+++.+-.....
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~  285 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG  285 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence            4667778889999999999887665531110        01111111 12456777788999999999999876433222


Q ss_pred             CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956          392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       392 ~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~  471 (667)
                      . ...+  ...+..+++++.+|.+..+|..+++.....-....      ....+.... +  .+|++++.+|.|+++|..
T Consensus       286 ~-~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~------~~~~sp~v~-~--g~l~v~~~~G~l~~ld~~  353 (394)
T PRK11138        286 S-VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH------RLLTAPVLY-N--GYLVVGDSEGYLHWINRE  353 (394)
T ss_pred             C-ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC------CcccCCEEE-C--CEEEEEeCCCEEEEEECC
Confidence            1 1122  23567888888999999999988765432111111      112222222 3  378889999999999987


Q ss_pred             cceeeEEeCCCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          472 DVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       472 ~~~~~~~~~~~~~~v~-~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      +.....+.......+. ...+  .+..|+.++.||.|+.++.
T Consensus       354 tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        354 DGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            6554443321222222 2222  2457888899999998764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.0007  Score=75.17  Aligned_cols=216  Identities=16%  Similarity=0.140  Sum_probs=129.3

Q ss_pred             ecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCc-EEEEEEeeCCCCEEEEEecCC-----eEEEEecCCC------
Q 005956          317 WSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY-VTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEK------  382 (667)
Q Consensus       317 ~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~-V~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~------  382 (667)
                      |++++ .++.|+.+|.|.+.+-. -+.++-|+ +... |..+.... ..++|++.+.|+     .|+|||+...      
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            45555 99999999988887643 22324443 3333 44443332 446788777664     4899998643      


Q ss_pred             eEE---Eecc-----cCCceEEEEEeeCCCEEEEEecCCcEEEEEecC--CcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          383 RVV---DWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       383 ~~~---~~~~-----~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~--~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      +++   ....     ...++.+++.+.+-+.+|+|-.+|.|..+.-.-  .......+...+     ..+||++.+..++
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-----~~pITgL~~~~d~  183 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-----KEPITGLALRSDG  183 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-----CCCceeeEEecCC
Confidence            222   2222     245688999999999999999999999885321  111111222233     4899999999887


Q ss_pred             CeEEEEEeCCCcEEEEECCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeE
Q 005956          453 SQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  531 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  531 (667)
                      ...++++. -..|.+|.+.... .......|+....|.+|++....+++++ +..|++|+.+....-........ ....
T Consensus       184 ~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k-k~~~  260 (933)
T KOG2114|consen  184 KSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK-KEML  260 (933)
T ss_pred             ceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe-EEEE
Confidence            55333333 3468888765322 1222334778888999977655465555 45699999886543332221111 1223


Q ss_pred             EccCCcEEEEe
Q 005956          532 FFSEGVSVAVQ  542 (667)
Q Consensus       532 fs~dg~~lav~  542 (667)
                      |..-|.++++.
T Consensus       261 ~~~~g~~L~v~  271 (933)
T KOG2114|consen  261 VFSFGLLLCVT  271 (933)
T ss_pred             EEecCEEEEEE
Confidence            33336666664

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.03  E-value=0.0039  Score=63.00  Aligned_cols=204  Identities=13%  Similarity=0.123  Sum_probs=129.7

Q ss_pred             eEEEEecCCC--eEEEEeCCC-cEEEEecCCCeEeEEeeCCC---cEEEEEEeeCCCCEEEEEec-----CCeEEEEecC
Q 005956          312 VLDLAWSNSN--YLLSCSMDK-TVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSI-----DGKVRIWGVC  380 (667)
Q Consensus       312 V~~l~~s~~~--~l~s~s~Dg-~I~iWd~~~~~~~~~~~h~~---~V~~l~f~p~d~~~l~sgs~-----Dg~v~iwdl~  380 (667)
                      ...++.+|..  .++.+-.-| ...+||..+++....+....   .--...|++ |+++|++.-.     .|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence            3456777854  566666665 46789999999887774221   122468999 9999998654     4789999998


Q ss_pred             -CCe-EEEecccCCceEEEEEeeCCCEEEEEec------------------CCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956          381 -EKR-VVDWADVRDVISAICYIPDGKGFIVGSI------------------TGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       381 -~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~------------------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~  440 (667)
                       +-+ +-.+..+.-....+.+.|||+.|+++..                  +.++.+.|..++.+..+ ..+.  ...+.
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q-~~Lp--~~~~~  162 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ-VELP--PDLHQ  162 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee-eecC--ccccc
Confidence             333 3346666666777889999988888632                  22455556666655432 2221  11234


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCC-------cEEEEECCcceeeEEe-----CCCCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 005956          441 NKITGIQFSRDESQRIMITSEDS-------KLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIG-DDCRV  507 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg-------~I~iwd~~~~~~~~~~-----~~~~~~v~~v~~spdg~~l~sgs-~Dg~I  507 (667)
                      ..|..+++.++| ..++..-..|       -|.+++.......+..     ..-.+.+-+|++++++.++++.+ ..+.+
T Consensus       163 lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  163 LSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             cceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            678889998886 3333332222       2444443332222222     11346789999999999886665 56789


Q ss_pred             EEEEcCCCCcccc
Q 005956          508 YVWNYDELCFPSS  520 (667)
Q Consensus       508 ~iWd~~~~~~~~~  520 (667)
                      .+||..++.....
T Consensus       242 ~~~d~~tg~~~~~  254 (305)
T PF07433_consen  242 AVWDAATGRLLGS  254 (305)
T ss_pred             EEEECCCCCEeec
Confidence            9999999876443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.02  E-value=0.00011  Score=81.55  Aligned_cols=149  Identities=13%  Similarity=0.199  Sum_probs=112.5

Q ss_pred             eEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec---------CCeEEEEecCC
Q 005956          312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---------DGKVRIWGVCE  381 (667)
Q Consensus       312 V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~---------Dg~v~iwdl~~  381 (667)
                      |.-+..+ +..|.+|...|+|.+-|..+.+.++++. |.+.|..+..   .|++|++++.         |..|++||++.
T Consensus       180 v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRm  255 (1118)
T KOG1275|consen  180 VTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRM  255 (1118)
T ss_pred             eEEEEec-CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhh
Confidence            5444432 2378899999999999999999999996 9999988877   6889999885         55689999999


Q ss_pred             CeEEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          382 KRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       382 ~~~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                      .+.+..........-+.|+|. ...+++.+..|.+.+-|..+...+.. ....+    ..+..+..+.+++++ ..++.+
T Consensus       256 mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~----p~~s~i~~fDiSsn~-~alafg  330 (1118)
T KOG1275|consen  256 MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN----PNGSGISAFDISSNG-DALAFG  330 (1118)
T ss_pred             hhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc----cCCCcceeEEecCCC-ceEEEe
Confidence            887665554444566778884 46788999999999999443322211 11111    113559999999995 899999


Q ss_pred             eCCCcEEEEE
Q 005956          460 SEDSKLRILD  469 (667)
Q Consensus       460 s~dg~I~iwd  469 (667)
                      ..+|.|.+|.
T Consensus       331 d~~g~v~~wa  340 (1118)
T KOG1275|consen  331 DHEGHVNLWA  340 (1118)
T ss_pred             cccCcEeeec
Confidence            9999999997

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.99  E-value=0.00049  Score=73.10  Aligned_cols=254  Identities=13%  Similarity=0.092  Sum_probs=137.9

Q ss_pred             CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccC-----------------
Q 005956          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-----------------  391 (667)
Q Consensus       329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~-----------------  391 (667)
                      .+.+.|||+.+++..........+....|+| +++.++... ++.|.++++.++...++....                 
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            4678999999987776665567888999999 899988875 678999999888766533211                 


Q ss_pred             -CceEEEEEeeCCCEEEEEecC-CcEEE-----------------------------------EEecCCcceeeeEeecc
Q 005956          392 -DVISAICYIPDGKGFIVGSIT-GTCHF-----------------------------------YKASGNDLKLEKVDFHD  434 (667)
Q Consensus       392 -~~v~~v~~spdg~~l~~gs~d-g~i~l-----------------------------------~d~~~~~~~~~~~~~~~  434 (667)
                       +.-.++-|+|||++|+....| ..+..                                   +|+.+++..  .+....
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~--~~~~~~  177 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT--ELDPPN  177 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC--EE---H
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE--Eeeecc
Confidence             234678899999999886543 22322                                   222222211  000000


Q ss_pred             ccCcCCCCeEEEEEccCCCeEE-EEEeCCC---cEEEEECCcc--eeeEEe--CCCCCCeEEEEEc-CCCC-EEEEEeCC
Q 005956          435 RKKTSGNKITGIQFSRDESQRI-MITSEDS---KLRILDGVDV--IHKFKG--LPKSGSQMSASFT-TTGK-HIISIGDD  504 (667)
Q Consensus       435 ~~~~~~~~I~~l~~sp~g~~~l-~~~s~dg---~I~iwd~~~~--~~~~~~--~~~~~~v~~v~~s-pdg~-~l~sgs~D  504 (667)
                      ........+..+.|.+++..++ ...+.+.   .+.++|....  ......  ..--.......|. +++. +|.....|
T Consensus       178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence            0011234577888999863122 2334433   3555665421  111111  1111222345554 5555 44455566


Q ss_pred             C--cEEEEEcCCCCcccccccc-CccceeEEccCCcEEEEecCCCCcccccccCCCCC-CcCccCcCCCCCCcccC-CCc
Q 005956          505 C--RVYVWNYDELCFPSSKQKN-SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLR-DCSQKWDNLETAPWIRD-SER  579 (667)
Q Consensus       505 g--~I~iWd~~~~~~~~~~~~~-~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~-~~~  579 (667)
                      |  .|++++..++......... .+.....+.+++..+........+..+++-.-.+. ...   ...-+...... ...
T Consensus       258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT~~~~~~~~~~  334 (353)
T PF00930_consen  258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLTCEDGDHYSAS  334 (353)
T ss_dssp             SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESSTTSSTTEEEE
T ss_pred             CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEeccCCCCCceEEE
Confidence            6  5666677766544333333 34456788999888877666655555555443333 111   11122222333 678


Q ss_pred             ccCCCCCCCC
Q 005956          580 FSLGSWFSND  589 (667)
Q Consensus       580 fS~~~~~~~~  589 (667)
                      |||++.|++.
T Consensus       335 ~Spdg~y~v~  344 (353)
T PF00930_consen  335 FSPDGKYYVD  344 (353)
T ss_dssp             E-TTSSEEEE
T ss_pred             ECCCCCEEEE
Confidence            9999888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.97  E-value=0.002  Score=70.97  Aligned_cols=185  Identities=12%  Similarity=0.060  Sum_probs=119.2

Q ss_pred             ecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC----CeEEEEecCCCeEEEeccc
Q 005956          317 WSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADV  390 (667)
Q Consensus       317 ~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D----g~v~iwdl~~~~~~~~~~~  390 (667)
                      +.||| .+ .+.-..+.+.+.|.++.+....+.-......++++| +++++++.+.+    .++...+............
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            45677 33 244456788889999888887777666667889999 88888887643    2333333322221111111


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCcEEEEEecC----CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 005956          391 RDVISAICYIPDGKGFIVGSITGTCHFYKASG----NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  466 (667)
Q Consensus       391 ~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~----~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~  466 (667)
                      ..   .-++.++|++..++  ++.|.+.|.++    .......+..       +.....+.++|||...++++..+.+|.
T Consensus       279 ~~---iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-------GKsPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        279 AR---IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-------PKNPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             HH---HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-------CCCccceEECCCCCEEEEeCCCCCcEE
Confidence            11   01344678877763  67899999887    2222222222       256788999999866666667799999


Q ss_pred             EEECCcceeeE-----------EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          467 ILDGVDVIHKF-----------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       467 iwd~~~~~~~~-----------~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      |+|+.+....|           ....-.......+|+++|....|---|..|..||+..
T Consensus       347 VIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        347 VIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            99987644211           1111233456789999998888888899999999876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.95  E-value=0.0013  Score=70.66  Aligned_cols=131  Identities=15%  Similarity=0.187  Sum_probs=92.5

Q ss_pred             cEEEEecCCC--eEeEEeeCCCcEEEEEEeeCCCCEEEEEe----cCCe----EEEEecCCCeEE----EecccCCceEE
Q 005956          331 TVRMWQVGCN--QCLNVFDHHNYVTCVQFNPIDDNYFISGS----IDGK----VRIWGVCEKRVV----DWADVRDVISA  396 (667)
Q Consensus       331 ~I~iWd~~~~--~~~~~~~h~~~V~~l~f~p~d~~~l~sgs----~Dg~----v~iwdl~~~~~~----~~~~~~~~v~~  396 (667)
                      .+.++.+..+  +.+..+.......++.|+..+++.+.+..    .+|.    -.+|++...++.    ........+.+
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~  264 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC  264 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence            3444544433  23333345555678888875666666543    2333    467777766543    34567888999


Q ss_pred             EEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956          397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       397 v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~  471 (667)
                      .+++|+...++.|+.||.|.+||.........+.         .-..+.++|+|+| ..+++++..|.+.+||+.
T Consensus       265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka---------~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  265 CARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA---------EFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EecCcccceEEEEecCCeEEEEEcCCCeeeeeee---------cccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence            9999999999999999999999987653332211         2457889999996 899999999999999965

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.95  E-value=0.0021  Score=69.65  Aligned_cols=225  Identities=16%  Similarity=0.174  Sum_probs=119.1

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      ...-....|.++|+|++++. +.||...|+.....                                             
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---------------------------------------------   63 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---------------------------------------------   63 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---------------------------------------------
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---------------------------------------------
Confidence            34445778999999999998 45677777763320                                             


Q ss_pred             CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                         ..  ...+.-...+|.+.+.+++-....+|.|+.--+.+..+.+.....+..+-.    |.+|+..+. +.|.+||+
T Consensus        64 ---r~--k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw  133 (443)
T PF04053_consen   64 ---RN--KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDW  133 (443)
T ss_dssp             ---EE--EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred             ---cc--cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEh
Confidence               10  123455678899878888888889999974333333334443333444432    666666654 48999999


Q ss_pred             CCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC--------cc--eeeeEeeccccCcCCCCeEEEEEc
Q 005956          380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN--------DL--KLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       380 ~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~--------~~--~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      .+++++....... |..+.|+++|.+++..+.+ .+.+++....        ..  ....+  +.    ....|.+.+|.
T Consensus       134 ~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~--~E----~~~~IkSg~W~  205 (443)
T PF04053_consen  134 ETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI--HE----ISERIKSGCWV  205 (443)
T ss_dssp             TT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE--EE----E-S--SEEEEE
T ss_pred             hHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE--EE----ecceeEEEEEE
Confidence            9999988766554 8999999999999998865 6777665433        00  11111  11    02578888998


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      .+  -++.++..  .|+.+=..+. ..+..  -..++.-+.+.+..+.|+....|+.|..+.++..
T Consensus       206 ~d--~fiYtT~~--~lkYl~~Ge~-~~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  206 ED--CFIYTTSN--HLKYLVNGET-GIIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             TT--EEEEE-TT--EEEEEETTEE-EEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             cC--EEEEEcCC--eEEEEEcCCc-ceEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            75  34444443  6666433221 11221  1334555666676778888888888888877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.95  E-value=0.0099  Score=60.90  Aligned_cols=202  Identities=13%  Similarity=0.134  Sum_probs=118.4

Q ss_pred             EEecCCC-eEE--EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC-CCeEEE----
Q 005956          315 LAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVD----  386 (667)
Q Consensus       315 l~~s~~~-~l~--s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~-~~~~~~----  386 (667)
                      ++++.++ +++  -.+--.+|.|-|+..++.+..+.-.+   |....|..+.-|.+-+.||.+.-..+. .|+...    
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence            4566676 333  33445678899999999888876554   333334344668888899999998887 444432    


Q ss_pred             -ecccCC-ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCc----CCCCeEEEEEccCCCeEEEEE
Q 005956          387 -WADVRD-VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT----SGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       387 -~~~~~~-~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~----~~~~I~~l~~sp~g~~~l~~~  459 (667)
                       +....+ .+..-++...+..++.-+.+|.|+-.|+........ .+.+......    ..+...-+++++..+.+++..
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence             111122 233445566667777789999999999987764443 3332211000    112334567776543333322


Q ss_pred             e--C-----CC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCCcccc
Q 005956          460 S--E-----DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       460 s--~-----dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~Dg~I~iWd~~~~~~~~~  520 (667)
                      .  .     |+  .|.++|+.+..+..+.. -...+.++.++.+.+ +|++.+ .++.|.|||..+++....
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence            1  1     11  68888887655544442 134577899988876 665554 578999999999876443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.93  E-value=0.0065  Score=60.41  Aligned_cols=205  Identities=13%  Similarity=0.206  Sum_probs=119.8

Q ss_pred             eeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          303 QELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      ..+.+-...+..|+|.|+.  +++.....+.|...+.. |+.++.+.  .....-.|++.. ++.++++--.++.+.+++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence            3455666679999999975  55566677888888864 78888775  335678888876 666666555689999998


Q ss_pred             cCCCe----E---E--E--ec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC--CcceeeeEeeccc--cCcCCCC
Q 005956          379 VCEKR----V---V--D--WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDR--KKTSGNK  442 (667)
Q Consensus       379 l~~~~----~---~--~--~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~--~~~~~~~~~~~~~--~~~~~~~  442 (667)
                      +....    .   .  .  .. ..+..+-.++|+|.++.|+++-...-..+|.+..  .............  .......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            83311    1   1  1  11 2345689999999988998888887788888875  2222111111110  1223456


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCC-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~-------~~~~v~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                      +.+++++|..+.+++.+.....|.++|.. +.+..+....       .-...-.|+|.++|++ +..++-+..+++
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence            88999999877888888888899999965 3333343322       1235678999999854 445577776665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.00028  Score=71.81  Aligned_cols=84  Identities=17%  Similarity=0.218  Sum_probs=74.0

Q ss_pred             CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      ++...+.+|...|.+++|+|.+  ++..++.+.+|+|.|+++..++..+.....+++++|.-++.++|+.|-.+|.|.||
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEE
Confidence            3455677899999999999966  78899999999999999999999988779999999999777889999999999999


Q ss_pred             ecCCCe
Q 005956          378 GVCEKR  383 (667)
Q Consensus       378 dl~~~~  383 (667)
                      |++..+
T Consensus       264 D~R~~~  269 (463)
T KOG1645|consen  264 DMRQPE  269 (463)
T ss_pred             EccCCC
Confidence            998744

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.00076  Score=74.42  Aligned_cols=68  Identities=13%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                      +++++|+|.. .|+.|-.-|.+.+|...+.+..... .|..+|..+.|+| +|..++++..-|.|.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            5669999988 8888888899999999877665554 4999999999999 99999999999999999765

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.85  E-value=0.00094  Score=72.02  Aligned_cols=193  Identities=16%  Similarity=0.228  Sum_probs=120.7

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEE--eCC--CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE-ecCCe--
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSC--SMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGK--  373 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~--s~D--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg-s~Dg~--  373 (667)
                      ...+..-...+..-.|+|++ .++..  ...  ..+.++++.+++..........-...+|+| |++.|+.. ..||.  
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~  263 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPD  263 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCcc
Confidence            33444445567778899988 33322  222  359999999988777776666666779999 77766654 45554  


Q ss_pred             EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CC--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       374 v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      |+++|+.++....+....+.-..-.|+|||+.++..+. .|  .|.++++.+....  .+....      ..-..-.|+|
T Consensus       264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~--riT~~~------~~~~~p~~Sp  335 (425)
T COG0823         264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT--RLTFSG------GGNSNPVWSP  335 (425)
T ss_pred             EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee--EeeccC------CCCcCccCCC
Confidence            77778888886665555555567789999999988764 34  4556666655442  233222      1122678999


Q ss_pred             CCCeEEEEEeCCCc--EEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956          451 DESQRIMITSEDSK--LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  504 (667)
Q Consensus       451 ~g~~~l~~~s~dg~--I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D  504 (667)
                      ||..+++....+|.  |.+.|...... .+...........+|.++|+.|+..+..
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence            98655555544555  55555443221 2222234444566788888887766543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.85  E-value=0.0031  Score=68.17  Aligned_cols=191  Identities=13%  Similarity=0.025  Sum_probs=117.2

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCce-----
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI-----  394 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v-----  394 (667)
                      ++.++.++.++.+..+|..+|+.+........+.+--.-  .+..++.+..++.|..+|..+++.+-........     
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            357778888999999999999998887654444322111  2456777888999999999999877433322110     


Q ss_pred             -EEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC-CCCeEEEEEcc--CCCeEEEEEeCCCcEEEEEC
Q 005956          395 -SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSR--DESQRIMITSEDSKLRILDG  470 (667)
Q Consensus       395 -~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~-~~~I~~l~~sp--~g~~~l~~~s~dg~I~iwd~  470 (667)
                       .+...  .+..+++++.+|.+..+|..+++..... ......... ......+..+|  .+ ..+++++.++.+..+|.
T Consensus       198 ~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~  273 (394)
T PRK11138        198 ESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDL  273 (394)
T ss_pred             CCCCEE--ECCEEEEEcCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEEC
Confidence             11111  2346777888999999999887764431 111000000 00000111111  12 36777788999999998


Q ss_pred             CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956          471 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       471 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                      .+.....+..  ......+.  ..+..|+.++.+|.|+.+|..+++..+.
T Consensus       274 ~tG~~~W~~~--~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        274 RSGQIVWKRE--YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             CCCCEEEeec--CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence            8665555432  11111222  2466788888999999999998876543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.69  E-value=0.0087  Score=65.49  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=86.4

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      |...|.--+++..++||+.|+.-|.+.+|+-..+..                                            
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--------------------------------------------   67 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM--------------------------------------------   67 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhh--------------------------------------------
Confidence            455566667778899999999999999998765211                                            


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE-----Ee--eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----VF--DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~-----~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                      ......+-.+.+..+..+++. ++|.|+..|.|.++.+....+-.     ..  .|...|+|++|++ ++..+++|...|
T Consensus        68 ~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~G  146 (726)
T KOG3621|consen   68 RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQG  146 (726)
T ss_pred             hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCc
Confidence            112222344556667778877 77888889999999887643211     11  2788999999999 999999999999


Q ss_pred             eEEEEecCC
Q 005956          373 KVRIWGVCE  381 (667)
Q Consensus       373 ~v~iwdl~~  381 (667)
                      +|.+-.+..
T Consensus       147 kv~~~~L~s  155 (726)
T KOG3621|consen  147 KVVLTELDS  155 (726)
T ss_pred             eEEEEEech
Confidence            998887765

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.66  E-value=0.00095  Score=76.06  Aligned_cols=146  Identities=18%  Similarity=0.226  Sum_probs=99.3

Q ss_pred             CCCEEEEE-ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeC-------CCEEEEEecCCcEEEEEecCCcceeeeEe
Q 005956          361 DDNYFISG-SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD-------GKGFIVGSITGTCHFYKASGNDLKLEKVD  431 (667)
Q Consensus       361 d~~~l~sg-s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spd-------g~~l~~gs~dg~i~l~d~~~~~~~~~~~~  431 (667)
                      +.++|+.- .....|+-.|+..|+++. |..+.. +.-..+.|+       ....++|-.+..+..||.+-.....  +.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~--v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL--VD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCC-cceeEecccccccccCCCceEEEECCCceEEeccCCCCCce--ee
Confidence            34444443 345789999999999986 444433 323344453       3356778889999999998644211  11


Q ss_pred             eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      ...+........+|++-+.+|  +||+|+.+|.||+||-.....+....+-+.+|.++..+.||++|++.+ +..+.+++
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLID  645 (794)
T ss_pred             ccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence            122222345678899988887  999999999999999432222222233578999999999999998877 56788887


Q ss_pred             c
Q 005956          512 Y  512 (667)
Q Consensus       512 ~  512 (667)
                      .
T Consensus       646 t  646 (794)
T PF08553_consen  646 T  646 (794)
T ss_pred             E
Confidence            5

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.60  E-value=0.0046  Score=68.20  Aligned_cols=108  Identities=15%  Similarity=0.082  Sum_probs=75.8

Q ss_pred             CCCEEEEEecCCeEEEEecCC-----CeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceee-eEee-
Q 005956          361 DDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE-KVDF-  432 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~-----~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~-~~~~-  432 (667)
                      ++++...  .+++|.+.|..+     .+++........+..+.++|||+++++++ .++++.++|+...+.... .+.. 
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence            6666665  367899999998     46777777888889999999999988765 588999999987553110 0000 


Q ss_pred             ---ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956          433 ---HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       433 ---~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                         .... .-+..-...+|.++| +.+.+-.-|..|..||+..
T Consensus       365 ~~vvaev-evGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEP-ELGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEee-ccCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence               0000 011233456888886 6777778899999999765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.59  E-value=0.029  Score=58.76  Aligned_cols=172  Identities=13%  Similarity=0.119  Sum_probs=104.7

Q ss_pred             CcEEEEecCCC-----eEe--EEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe-EEEecccCCceEEEEEee
Q 005956          330 KTVRMWQVGCN-----QCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIP  401 (667)
Q Consensus       330 g~I~iWd~~~~-----~~~--~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~-~~~~~~~~~~v~~v~~sp  401 (667)
                      |.|.++++...     +..  ......++|++++-.  ++. |+.+ ..+.|++|++...+ +.........+...+...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            88999999884     222  233478899998876  344 4443 35899999999888 665444444444445555


Q ss_pred             CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---------
Q 005956          402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---------  472 (667)
Q Consensus       402 dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---------  472 (667)
                      .++++++|.....+.++...........+.-    ......++++.|-+++ ..++++..+|.+.++....         
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~----d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~  212 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKLILVAR----DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGD  212 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-EEEEEE----ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEEEEEEe----cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCccccccc
Confidence            5779999999999998876653322222211    1113568999999776 5999999999999987431         


Q ss_pred             -ceeeEEeCCCCCCeEEE---EEcC--CCC------EEEEEeCCCcEEEE
Q 005956          473 -VIHKFKGLPKSGSQMSA---SFTT--TGK------HIISIGDDCRVYVW  510 (667)
Q Consensus       473 -~~~~~~~~~~~~~v~~v---~~sp--dg~------~l~sgs~Dg~I~iW  510 (667)
                       .............|+++   ++.|  .+.      .++.++.+|.|.+.
T Consensus       213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence             11222222245567766   4444  222      37777788888733

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.59  E-value=0.0013  Score=71.72  Aligned_cols=163  Identities=9%  Similarity=0.117  Sum_probs=109.5

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc--cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (667)
Q Consensus       348 h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~--~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~  425 (667)
                      +...|.--++.. .+++++.|+..|.+++|+-.+++......  ..+.+...+++++..++|+|+..|.|.+|.+.. ..
T Consensus        32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-EL  109 (726)
T ss_pred             CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cC
Confidence            333333334444 78999999999999999988887665444  566677888999999999999999999999987 44


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeE---EeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKF---KGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~---~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      +.....+....+.|...|++++|++++ ..+++|...|+|..-.+.. .....   ......+.|..+... ++.+|++.
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt  187 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST  187 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh
Confidence            444333333344578999999999996 8999999999998876554 11111   111134566666653 33344443


Q ss_pred             eCCCcEEEEEcCCCC
Q 005956          502 GDDCRVYVWNYDELC  516 (667)
Q Consensus       502 s~Dg~I~iWd~~~~~  516 (667)
                      .. . -.+++.+...
T Consensus       188 l~-r-~~Lc~tE~et  200 (726)
T KOG3621|consen  188 LT-R-CILCQTEAET  200 (726)
T ss_pred             hh-h-hheeecchhH
Confidence            32 2 2345555443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.58  E-value=0.0024  Score=68.92  Aligned_cols=188  Identities=11%  Similarity=0.106  Sum_probs=116.6

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEe---cC-CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCc--EEEEEe
Q 005956          348 HHNYVTCVQFNPIDDNYFISGS---ID-GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGT--CHFYKA  420 (667)
Q Consensus       348 h~~~V~~l~f~p~d~~~l~sgs---~D-g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~--i~l~d~  420 (667)
                      ....+..-.|+| ++..++..+   .. ..+.++|+.+++........+.-....|+|||+.|+... .||.  |.++|+
T Consensus       191 ~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            344666778888 666544432   22 459999999988776666666777789999999887654 5665  556666


Q ss_pred             cCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCc-ceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956          421 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFTTTGKH  497 (667)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw--d~~~-~~~~~~~~~~~~~v~~v~~spdg~~  497 (667)
                      .+.....    +..    ..+.-+.-.|+|||..++++++..|.-.||  |... ....+..  ....-..-.|+|||++
T Consensus       270 ~~~~~~~----Lt~----~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~SpdG~~  339 (425)
T COG0823         270 DGKNLPR----LTN----GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPDGDK  339 (425)
T ss_pred             CCCccee----ccc----CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCCCCE
Confidence            6655322    111    112334678999998888888888865555  4432 2233333  2222227789999999


Q ss_pred             EEEEeCC-Cc--EEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956          498 IISIGDD-CR--VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       498 l~sgs~D-g~--I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      |+..+.. |.  |.+.++.++................+.++|..+.......
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            9887743 44  6667766655322223333344457788888777755443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.55  E-value=0.071  Score=55.76  Aligned_cols=173  Identities=17%  Similarity=0.324  Sum_probs=112.7

Q ss_pred             CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCC------CCEEEEEec---------C-CeEEEEecCCC-----eE--
Q 005956          330 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID------DNYFISGSI---------D-GKVRIWGVCEK-----RV--  384 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d------~~~l~sgs~---------D-g~v~iwdl~~~-----~~--  384 (667)
                      ..|++.|..+.+.+..+.  ....+++++.....      ..+|+.|+.         . |.|.++++...     ++  
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            358889988888777664  44455555443311      467777753         2 88999999884     33  


Q ss_pred             EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCc-ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       385 ~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~-~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                      +......++|++++-- +| .|+++ .++.|.+|++...+ +... .....     ...++++....+   ++++|....
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~-~~~~~-----~~~i~sl~~~~~---~I~vgD~~~  149 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKK-AFYDS-----PFYITSLSVFKN---YILVGDAMK  149 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEE-EEE-B-----SSSEEEEEEETT---EEEEEESSS
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhh-heecc-----eEEEEEEecccc---EEEEEEccc
Confidence            3345668889998865 33 44444 45799999999887 3332 11211     146777777643   888998888


Q ss_pred             cEEEE--ECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          464 KLRIL--DGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       464 ~I~iw--d~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      .+.++  +.... ...+........++++.|-++++.++.+..+|.|.++..+.
T Consensus       150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            88876  43221 22333333456688898886778999999999999999864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.52  E-value=0.14  Score=55.55  Aligned_cols=244  Identities=15%  Similarity=0.172  Sum_probs=130.5

Q ss_pred             ccEEEEEEcCCCCEEEEE-ECC----CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          223 GCIWTLKFSPDGRYLASG-GED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latg-s~D----g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      -.+..+.+||||++||-+ +..    ..|+|+|+.++....                                       
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------------------------------------  164 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------------------------------------  164 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------------------------------------
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------------------------------------
Confidence            344578899999998865 333    359999998742211                                       


Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCC-----------CcEEEEecCCCeE--eEEee--CCCc-EEEEEEeeC
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----------KTVRMWQVGCNQC--LNVFD--HHNY-VTCVQFNPI  360 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D-----------g~I~iWd~~~~~~--~~~~~--h~~~-V~~l~f~p~  360 (667)
                           ..+..  .....+.|.+++ .|+....+           ..|+.|++.+...  ..++.  .... ...+..++ 
T Consensus       165 -----d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-  236 (414)
T PF02897_consen  165 -----DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-  236 (414)
T ss_dssp             -----EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-
T ss_pred             -----Ccccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-
Confidence                 01111  112238999997 44433322           2478888887643  34554  2333 67888888 


Q ss_pred             CCCEEEEEecC----CeEEEEecCCC-----eEEEecccCCceEEEEEeeCCCEEEEEe---cCCcEEEEEecCCcceee
Q 005956          361 DDNYFISGSID----GKVRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       361 d~~~l~sgs~D----g~v~iwdl~~~-----~~~~~~~~~~~v~~v~~spdg~~l~~gs---~dg~i~l~d~~~~~~~~~  428 (667)
                      ++++++.....    ..+.+.|+..+     ....+......+....-+..+.+++...   ..+.|.-.++........
T Consensus       237 d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~  316 (414)
T PF02897_consen  237 DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEW  316 (414)
T ss_dssp             TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGE
T ss_pred             cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccc
Confidence            88887765433    34788888775     3444444333443333333443443332   234566666665543111


Q ss_pred             e-EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEE-Ee-
Q 005956          429 K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIIS-IG-  502 (667)
Q Consensus       429 ~-~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~s-gs-  502 (667)
                      . .-+...   ....+..+....+  .+++....++  .|+++++. ............+.|..+...++++.+.. .+ 
T Consensus       317 ~~~l~~~~---~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss  391 (414)
T PF02897_consen  317 WTVLIPED---EDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSS  391 (414)
T ss_dssp             EEEEE--S---SSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE
T ss_pred             eeEEcCCC---CceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeC
Confidence            1 111111   0124556665543  5666665555  68889988 44333333334455666665566654432 22 


Q ss_pred             --CCCcEEEEEcCCCCcc
Q 005956          503 --DDCRVYVWNYDELCFP  518 (667)
Q Consensus       503 --~Dg~I~iWd~~~~~~~  518 (667)
                        .-++|+.||+.+++..
T Consensus       392 ~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  392 FTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             TTEEEEEEEEETTTTCEE
T ss_pred             CCCCCEEEEEECCCCCEE
Confidence              2368999999988753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.029  Score=60.12  Aligned_cols=202  Identities=15%  Similarity=0.141  Sum_probs=138.6

Q ss_pred             eEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec---CCeEEEEecCCCeEEE
Q 005956          312 VLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DGKVRIWGVCEKRVVD  386 (667)
Q Consensus       312 V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~---Dg~v~iwdl~~~~~~~  386 (667)
                      -..++.++.+  .++....+..|.+.|..+........-......+++.| +++.++.+..   ++++.+.|-.++++..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            3456667766  45555567899999988888888877555788999999 7766666555   6889999999988876


Q ss_pred             ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC--C
Q 005956          387 WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--S  463 (667)
Q Consensus       387 ~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d--g  463 (667)
                      ..........++++|+|+.+++.. .++.+.++|..+.....   ............-..+.+.|+|....++-..+  +
T Consensus       155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~  231 (381)
T COG3391         155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN  231 (381)
T ss_pred             EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---cccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence            544433448899999999777665 78899999977655431   00000111123456788999985455544444  6


Q ss_pred             cEEEEECCcceeeEEeCCCCC-CeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCc
Q 005956          464 KLRILDGVDVIHKFKGLPKSG-SQMSASFTTTGKHIISIGDD-CRVYVWNYDELCF  517 (667)
Q Consensus       464 ~I~iwd~~~~~~~~~~~~~~~-~v~~v~~spdg~~l~sgs~D-g~I~iWd~~~~~~  517 (667)
                      .+.+.|............-.. ....+.++|+|+++.+.... +.+.+-|..+...
T Consensus       232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence            888898775433333111112 56678999999999988544 7888888877654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.50  E-value=0.066  Score=54.54  Aligned_cols=196  Identities=12%  Similarity=0.128  Sum_probs=108.5

Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE---------------EeeCCCcEEEEE-EeeCCCCEEEEEecCCeE
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN---------------VFDHHNYVTCVQ-FNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~---------------~~~h~~~V~~l~-f~p~d~~~l~sgs~Dg~v  374 (667)
                      |..+...++- .|+.- .|+.+.++++..-....               .+.....+...+ -....+...+......+|
T Consensus        38 I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence            8888888865 33333 35999999987543333               222333444444 112234444455556689


Q ss_pred             EEEecCCC-----eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc------cCcCCCCe
Q 005956          375 RIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR------KKTSGNKI  443 (667)
Q Consensus       375 ~iwdl~~~-----~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~------~~~~~~~I  443 (667)
                      .+|.....     +..+-....+.+.+++|.  ++.+++|..+ ...+.|+.+...... ......      ......++
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~  192 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSEL-LDPSDSSSSFKSRNSSSKPL  192 (275)
T ss_pred             EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEE-eCccCCcchhhhcccCCCce
Confidence            99887653     344445566889999998  5678888755 578888886544321 111110      01122344


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                      ..+....+  .+|++.  +..-.+.|.. ...+..... -...+.++++.  ..||+..+. +.|.||++.+++....
T Consensus       193 ~~~~~~~~--e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~  262 (275)
T PF00780_consen  193 GIFQLSDN--EFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQT  262 (275)
T ss_pred             EEEEeCCc--eEEEEe--cceEEEEcCCCCcCcccEEE-cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEE
Confidence            45555433  455543  2223333322 222211111 13355566663  468888776 4599999999976443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.42  E-value=0.072  Score=57.64  Aligned_cols=201  Identities=14%  Similarity=0.178  Sum_probs=106.1

Q ss_pred             cEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc----cCC----ceEEEEEee
Q 005956          331 TVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD----VRD----VISAICYIP  401 (667)
Q Consensus       331 ~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~----~~~----~v~~v~~sp  401 (667)
                      .|+||+.. |+.+..+. ..+.|.++.|.. + ..|+....||.+++||+.... .....    ...    .+.+..+..
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence            48899876 44555554 338999999986 4 455666789999999997555 11111    111    122222222


Q ss_pred             CCCEEEEEecCCcEEEEEecCCcceeeeE-eeccccC-cC-CCCeEE-EEEccCCCeEEEEEeCCCcEEEEECCcceeeE
Q 005956          402 DGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKK-TS-GNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKF  477 (667)
Q Consensus       402 dg~~l~~gs~dg~i~l~d~~~~~~~~~~~-~~~~~~~-~~-~~~I~~-l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~  477 (667)
                      +|  +++-+.++.+.+..--......... ....... .+ ...... ..++.+. ...+....++.+.+.+......  
T Consensus       138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~--  212 (410)
T PF04841_consen  138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ--  212 (410)
T ss_pred             CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc--
Confidence            33  5555556555444322211111111 1111000 00 011111 2344443 3444445556666555333211  


Q ss_pred             EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc--ccCccceeEEccCCcEEEEec
Q 005956          478 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--KNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       478 ~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~fs~dg~~lav~w  543 (667)
                        ....+++..+++||+|++||.-..+|.+.|.+.+-.+......  .......+.|..++ .+++.|
T Consensus       213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d-av~l~~  277 (410)
T PF04841_consen  213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND-AVVLSW  277 (410)
T ss_pred             --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC-cEEEEe
Confidence              1134689999999999999999999999998765443322222  22333445666543 455566

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.42  E-value=0.00011  Score=78.86  Aligned_cols=202  Identities=14%  Similarity=0.203  Sum_probs=130.2

Q ss_pred             ccEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          223 GCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       223 ~~I~~v~fspd--g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      ..+.|++.+-+  ...|+.|..+|.|-+-.+....-                                           .
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------------------------------------S   93 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------------------------------------S   93 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------------------------------c
Confidence            34667766543  34888999999998877653110                                           0


Q ss_pred             cceeeeccccceEEEEecCCC--eEEEEe----CCCcEEEEecCCC--eEeE--Ee-e-CCCcEEEEEEeeCCCCEEEEE
Q 005956          301 PLQELHGHKGDVLDLAWSNSN--YLLSCS----MDKTVRMWQVGCN--QCLN--VF-D-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~--~l~s~s----~Dg~I~iWd~~~~--~~~~--~~-~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                      ......+|....++++|++-.  .|++|-    .|..+.|||+.++  .+..  .| . .......++|.. +.+++++|
T Consensus        94 s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaG  172 (783)
T KOG1008|consen   94 SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAG  172 (783)
T ss_pred             cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcc
Confidence            122334788899999999854  666652    3568999999876  2211  11 1 233455788886 88999999


Q ss_pred             ecCCeEEEEecCCCeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEe-cCCcceeeeEeeccccCcCCCCeEEE
Q 005956          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKA-SGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~-~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      .....+.++|++........-....+..+.+.| .+++++.- .||.|-+||. +.-+.....+ .+. .+.....+..+
T Consensus       173 m~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i-~~~-~N~~~~~l~~~  249 (783)
T KOG1008|consen  173 MTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQII-LRN-ENKKPKQLFAL  249 (783)
T ss_pred             cccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHH-hhC-CCCcccceeeE
Confidence            999999999998543322222223456677788 66666654 4999999993 3333222211 111 22334579999


Q ss_pred             EEccCCCeEEEEEeCC-CcEEEEECC
Q 005956          447 QFSRDESQRIMITSED-SKLRILDGV  471 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~d-g~I~iwd~~  471 (667)
                      +|+|.....+++...| ++|+++|+.
T Consensus       250 aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  250 AYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             EeccCCcchhhhhccCcceEEEeccc
Confidence            9999755566666655 589999864

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.38  E-value=0.075  Score=59.07  Aligned_cols=205  Identities=12%  Similarity=0.076  Sum_probs=116.5

Q ss_pred             CCCcEEEEecCCCeEeEEeeCCC---------------------cEE-EEEEeeCCCCEEEEEecCC-------------
Q 005956          328 MDKTVRMWQVGCNQCLNVFDHHN---------------------YVT-CVQFNPIDDNYFISGSIDG-------------  372 (667)
Q Consensus       328 ~Dg~I~iWd~~~~~~~~~~~h~~---------------------~V~-~l~f~p~d~~~l~sgs~Dg-------------  372 (667)
                      .++.|..+|..+++.+..+....                     .|+ ..++.+ .+..++.++.++             
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~  251 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD  251 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence            46788999999998887765211                     011 233443 456777777655             


Q ss_pred             -----eEEEEecCCCeEEEeccc--CC-----ceEEEEEe----eCCC---EEEEEecCCcEEEEEecCCcceeeeEeec
Q 005956          373 -----KVRIWGVCEKRVVDWADV--RD-----VISAICYI----PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFH  433 (667)
Q Consensus       373 -----~v~iwdl~~~~~~~~~~~--~~-----~v~~v~~s----pdg~---~l~~gs~dg~i~l~d~~~~~~~~~~~~~~  433 (667)
                           .|.-+|+.+++..-....  ..     ......+.    -+|.   .+++++.+|.+..+|..+++.....-.. 
T Consensus       252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-  330 (488)
T cd00216         252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-  330 (488)
T ss_pred             CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-
Confidence                 799999999987743221  10     11111111    1343   5778889999999999998876542110 


Q ss_pred             cccCcCCCCeEEEEEccCCCeEEEEE------------------eCCCcEEEEECCcceeeEEeCCCC--------CCeE
Q 005956          434 DRKKTSGNKITGIQFSRDESQRIMIT------------------SEDSKLRILDGVDVIHKFKGLPKS--------GSQM  487 (667)
Q Consensus       434 ~~~~~~~~~I~~l~~sp~g~~~l~~~------------------s~dg~I~iwd~~~~~~~~~~~~~~--------~~v~  487 (667)
                               ...+...| +  .++++                  ..+|.|.-+|..+.....+.....        ....
T Consensus       331 ---------~~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~  398 (488)
T cd00216         331 ---------EQPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW  398 (488)
T ss_pred             ---------ccccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence                     01122222 1  22221                  235667777766554444432110        1111


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCcc--ceeEEccCCcEEEEecCCC
Q 005956          488 SASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR--SCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       488 ~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~--~~~~fs~dg~~lav~w~~~  546 (667)
                      .-.....+.+|+.++.||.|+.+|.++++...........  +-+.|..+|+..+....+.
T Consensus       399 ~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g~  459 (488)
T cd00216         399 GGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMVGG  459 (488)
T ss_pred             CcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEecC
Confidence            1111124678999999999999999999987665433222  2244566777666655443

The alignment model contains an 8-bladed beta-propeller.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.32  E-value=0.0045  Score=68.59  Aligned_cols=69  Identities=22%  Similarity=0.388  Sum_probs=56.7

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      +++++|+|..-.||.|-+-|.+.+|...+.+                                             .-..
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e---------------------------------------------~htv   96 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE---------------------------------------------THTV   96 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCce---------------------------------------------eeee
Confidence            4569999998899999999999999877521                                             1222


Q ss_pred             eeccccceEEEEecCCC-eEEEEeCCCcEEEEecC
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG  338 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~  338 (667)
                      ...|+.+|..+.||++| .|+++..=|.|.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            34699999999999999 99999999999999765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.093  Score=56.29  Aligned_cols=225  Identities=14%  Similarity=0.127  Sum_probs=144.5

Q ss_pred             ceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEeEEeeCC-CcEEEEEEeeCCCC-EEEEEecCCeEEEEecCCCeEE
Q 005956          311 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       311 ~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~d~~-~l~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      ....+...+++   +++....+ .+...+...........-. ..-..++.++ .+. .++....+..|.+.|..+.+..
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~-~~~~vyv~~~~~~~v~vid~~~~~~~  109 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNP-AGNKVYVTTGDSNTVSVIDTATNTVL  109 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCc-eeeecccccceeeeeccCCCccccceeeCC-CCCeEEEecCCCCeEEEEcCccccee
Confidence            34455666666   22222333 4555555422222222222 4556778888 555 5666666789999998888887


Q ss_pred             EecccCCceEEEEEeeCCCEEEEEec---CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          386 DWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       386 ~~~~~~~~v~~v~~spdg~~l~~gs~---dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                      ...........++++|+++.+.++..   ++.+.+.|..++..... + ..+.     .+ ..+++.|+|...+++-..+
T Consensus       110 ~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~-~vG~-----~P-~~~a~~p~g~~vyv~~~~~  181 (381)
T COG3391         110 GSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-I-PVGN-----TP-TGVAVDPDGNKVYVTNSDD  181 (381)
T ss_pred             eEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-E-ecCC-----Cc-ceEEECCCCCeEEEEecCC
Confidence            76666668889999999988887665   57888888887776544 2 2221     33 8999999985566666688


Q ss_pred             CcEEEEECCcceeeE-E---eCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccc-ccccC-ccceeEEc
Q 005956          463 SKLRILDGVDVIHKF-K---GLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELCFPSS-KQKNS-VRSCEHFF  533 (667)
Q Consensus       463 g~I~iwd~~~~~~~~-~---~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~~~~~~-~~~~~-~~~~~~fs  533 (667)
                      +.|.+.|........ .   ...-......+.++|+|.+++.....   +.+.+.|..++..... ..... ......++
T Consensus       182 ~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~  261 (381)
T COG3391         182 NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVD  261 (381)
T ss_pred             CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeEC
Confidence            999999966432221 1   11123445678899999987776544   5888888888765433 11111 34456889


Q ss_pred             cCCcEEEEecCC
Q 005956          534 SEGVSVAVQWPG  545 (667)
Q Consensus       534 ~dg~~lav~w~~  545 (667)
                      |+|..+-+.-..
T Consensus       262 p~g~~~yv~~~~  273 (381)
T COG3391         262 PAGKAAYVANSQ  273 (381)
T ss_pred             CCCCEEEEEecC
Confidence            999877776443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.29  E-value=0.047  Score=54.35  Aligned_cols=201  Identities=16%  Similarity=0.216  Sum_probs=106.0

Q ss_pred             eeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      +.|.+-...|..|+|+|+.. ++|+....+.|...+.. +                                        
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G----------------------------------------   53 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G----------------------------------------   53 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------------------------
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C----------------------------------------
Confidence            45556666799999999866 55555566766655543 1                                        


Q ss_pred             ccccCCccee--eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe------EeEEee------CCCcEEEEEEee
Q 005956          295 FQIEESPLQE--LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ------CLNVFD------HHNYVTCVQFNP  359 (667)
Q Consensus       295 ~~~~~~~~~~--l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~------~~~~~~------h~~~V~~l~f~p  359 (667)
                           +.+..  +.+ .+..-.|++..++ ++++.-.++.+.++++....      ....+.      ++..+-.++|.|
T Consensus        54 -----~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~  127 (248)
T PF06977_consen   54 -----KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP  127 (248)
T ss_dssp             ------EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET
T ss_pred             -----CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC
Confidence                 11222  223 3567888998888 45555568999999884321      112221      445689999999


Q ss_pred             CCCCEEEEEecCCeEEEEecCC---C-eE--EEe------cccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcce
Q 005956          360 IDDNYFISGSIDGKVRIWGVCE---K-RV--VDW------ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLK  426 (667)
Q Consensus       360 ~d~~~l~sgs~Dg~v~iwdl~~---~-~~--~~~------~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~  426 (667)
                       .++.|+.+-...-..+|.+..   . ..  ...      ......+.+++++|.. ++++....+..+..+|... +..
T Consensus       128 -~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~~  205 (248)
T PF06977_consen  128 -KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-RVV  205 (248)
T ss_dssp             -TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EE
T ss_pred             -CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-CEE
Confidence             666666666666667776654   1 11  111      1123458899999954 5566666777888888543 322


Q ss_pred             eeeEeecccc---CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          427 LEKVDFHDRK---KTSGNKITGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       427 ~~~~~~~~~~---~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                       ..+.+....   ...-...-+|+|.++|  .|++.++-+..++|
T Consensus       206 -~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  206 -SSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF  247 (248)
T ss_dssp             -EEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred             -EEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence             223332211   1112456789999986  56666676666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00320 WD40 WD40 repeats

Probab=97.26  E-value=0.0005  Score=45.46  Aligned_cols=36  Identities=39%  Similarity=0.939  Sum_probs=32.5

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEE
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH  250 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWd  250 (667)
                      ...+.+|...|+++.|++++.++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345678999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.26  E-value=0.02  Score=48.73  Aligned_cols=100  Identities=17%  Similarity=0.258  Sum_probs=72.2

Q ss_pred             eEEEEec---CCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956          312 VLDLAWS---NSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (667)
Q Consensus       312 V~~l~~s---~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~  386 (667)
                      |++|++.   .+|  .|+.|+.|..||+|+-+  ..+..+.....|+++.-..  +..|+.+..+|+|-+|+-... +-+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence            5666654   354  89999999999999854  7778888888999988876  578999999999999986332 222


Q ss_pred             ecccCCceEEEEEee-CC---CEEEEEecCCcEEE
Q 005956          387 WADVRDVISAICYIP-DG---KGFIVGSITGTCHF  417 (667)
Q Consensus       387 ~~~~~~~v~~v~~sp-dg---~~l~~gs~dg~i~l  417 (667)
                      .. .+..++++++.. ++   ..|++|-.+|.|.+
T Consensus        77 iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   77 IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            22 333466665544 32   36888888887753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.26  E-value=0.062  Score=52.21  Aligned_cols=105  Identities=10%  Similarity=-0.002  Sum_probs=80.7

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCce-EEEEEe
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI-SAICYI  400 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v-~~v~~s  400 (667)
                      +++.|+..+.+.--|..+|+..........|.+-+.-  -+++++.|...|.+++.+..++........-+.| ......
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            7788888888888999999888776666666665555  3678999999999999999999655433322333 233456


Q ss_pred             eCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          401 PDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       401 pdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      +++..+.+|+.|++.+..|.++.....+
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEe
Confidence            8999999999999999999988776544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.18  E-value=0.12  Score=53.22  Aligned_cols=179  Identities=13%  Similarity=0.169  Sum_probs=99.3

Q ss_pred             ecCCCeEEEEeCCCcEEEEecCCCeEeEEee------CCCcEEEEEEeeCCCCEEEEEec-----------CCeEEEEec
Q 005956          317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWGV  379 (667)
Q Consensus       317 ~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~d~~~l~sgs~-----------Dg~v~iwdl  379 (667)
                      ....+.|+++...  +.+++.+++..+..+.      .....+.+...| ++.+.+....           -|.|+.+|.
T Consensus        74 ~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p  150 (307)
T COG3386          74 IDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP  150 (307)
T ss_pred             ecCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC
Confidence            3444566666543  6667776665533331      223456777788 7766555433           133555554


Q ss_pred             CCCeEEE-ecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          380 CEKRVVD-WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       380 ~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                       .+..+. ...+-...+.++||||++.+.++.. .+.|+-|++........ ...... .....+..-.++...+| .+.
T Consensus       151 -~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-~~~~~G~PDG~~vDadG-~lw  227 (307)
T COG3386         151 -DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-FDEEPGLPDGMAVDADG-NLW  227 (307)
T ss_pred             -CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-ccCCCCCCCceEEeCCC-CEE
Confidence             344443 4444566788999999988877655 47888887763111111 000000 11122445566676776 344


Q ss_pred             EEEeCC-CcEEEEECC-cceeeEEeCCCCCCeEEEEE-cCCCCEEEEEeC
Q 005956          457 MITSED-SKLRILDGV-DVIHKFKGLPKSGSQMSASF-TTTGKHIISIGD  503 (667)
Q Consensus       457 ~~~s~d-g~I~iwd~~-~~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs~  503 (667)
                      +++..+ +.|.+|+.. +....+..  ....+++++| .|+.+.|+..+.
T Consensus       228 ~~a~~~g~~v~~~~pdG~l~~~i~l--P~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         228 VAAVWGGGRVVRFNPDGKLLGEIKL--PVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EecccCCceEEEECCCCcEEEEEEC--CCCCCccceEeCCCcCEEEEEec
Confidence            333333 389999876 44455554  3367778888 556666655543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.18  E-value=0.0057  Score=64.78  Aligned_cols=145  Identities=14%  Similarity=0.119  Sum_probs=98.2

Q ss_pred             EEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCE-------EEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956          365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG-------FIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  437 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~-------l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~  437 (667)
                      |.++.....++-.|+..|+++.--.....|+-+.+.|+.+.       -++|-.+..|.-||.+-...... ...+.+..
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl-~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL-AVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCccee-eeeecccc
Confidence            34455557789999999999864444444888888887642       35677888899999884433111 11122222


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      .......|++-..+|  +|++|+.+|.|++||--....+....+-+.+|..+..+.+|++|++.+ +.++.+-+..
T Consensus       428 ~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            233566777777776  999999999999999532222222333678999999999999998876 5666666653

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.11  E-value=0.021  Score=48.52  Aligned_cols=102  Identities=21%  Similarity=0.337  Sum_probs=71.1

Q ss_pred             EEEEEEeeCC---CCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          352 VTCVQFNPID---DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       352 V~~l~f~p~d---~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      |+++++...+   .+.|++|+.|..||+|+-.  .++.-....+.|++++.... ..|+.+..+|+|-+|+-.....   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW---   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW---   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee---
Confidence            5666666533   3689999999999999743  45555556677888887766 6799999999999998643332   


Q ss_pred             eEeeccccCcCCCCeEEEEEc---cCCCeEEEEEeCCCcEE
Q 005956          429 KVDFHDRKKTSGNKITGIQFS---RDESQRIMITSEDSKLR  466 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~s---p~g~~~l~~~s~dg~I~  466 (667)
                        ....+     ..++++++.   .+|...|++|=.+|.|-
T Consensus        76 --RiKSK-----~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 --RIKSK-----NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --eeccC-----CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              22221     346666553   45556788888888774

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.91  E-value=0.87  Score=49.30  Aligned_cols=179  Identities=11%  Similarity=0.137  Sum_probs=93.3

Q ss_pred             CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee---CCCc-----EEEEEEeeCCCCEEEEEecC
Q 005956          300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNY-----VTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~-----V~~l~f~p~d~~~l~sgs~D  371 (667)
                      +++..+.-..+.|.++.|..+..|+.-..||+++++|+.... ...+.   ....     +....+.. +|-.++  ..+
T Consensus        71 ~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~GivvL--t~~  146 (410)
T PF04841_consen   71 KLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NGIVVL--TGN  146 (410)
T ss_pred             CEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CCEEEE--CCC
Confidence            344444322378999999987788888999999999997433 11111   1112     22223332 342222  334


Q ss_pred             CeEEEEecCCCe-EE-EecccCC---------ceEE-EEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          372 GKVRIWGVCEKR-VV-DWADVRD---------VISA-ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       372 g~v~iwdl~~~~-~~-~~~~~~~---------~v~~-v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      +.+.+..--... .. .......         .... ..++.+....+....++.+.+.+....+.           ...
T Consensus       147 ~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-----------i~~  215 (410)
T PF04841_consen  147 NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-----------IDS  215 (410)
T ss_pred             CeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-----------ccC
Confidence            444444322211 11 1101000         0111 22344444444445555555443322100           111


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTG  495 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg  495 (667)
                      .+++..++.||+| ++++.-..+|.+.|.+..  +....+... .......+.|.-+.
T Consensus       216 ~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  216 DGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGND  271 (410)
T ss_pred             CCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCC
Confidence            3689999999996 788888899999998643  444444432 23455667776443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.85  E-value=0.016  Score=66.39  Aligned_cols=135  Identities=19%  Similarity=0.265  Sum_probs=89.9

Q ss_pred             EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEee------CCCCEEEEEecCCeEEEEecCCC--eEEE----ecccCC
Q 005956          325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP------IDDNYFISGSIDGKVRIWGVCEK--RVVD----WADVRD  392 (667)
Q Consensus       325 s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p------~d~~~l~sgs~Dg~v~iwdl~~~--~~~~----~~~~~~  392 (667)
                      .......|+-.|++.|+.+..+.....+.-..+.|      .+...-+.|-.+..+..||.+-.  +++.    ......
T Consensus       499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            33456789999999999999997444333334444      12344566777888999998863  3442    122345


Q ss_pred             ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          393 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       393 ~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      ..+|++-+.+| +||+|+.+|.||+||--+ ...      .....+-+.+|++|..+.|| ++|++++. ..|.+++
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~A------KT~lp~lG~pI~~iDvt~DG-kwilaTc~-tyLlLi~  645 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRA------KTALPGLGDPIIGIDVTADG-KWILATCK-TYLLLID  645 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccc-hhh------hhcCCCCCCCeeEEEecCCC-cEEEEeec-ceEEEEE
Confidence            57888877777 899999999999999533 211      11122346899999999997 55555543 4555555

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.79  E-value=0.15  Score=49.68  Aligned_cols=141  Identities=16%  Similarity=0.076  Sum_probs=97.1

Q ss_pred             CCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~  440 (667)
                      ...+++.|+..+.+.-.|..++.+....-....+.+-+.- -|++++.|+..|.+++.+.+++.........        
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------   92 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------   92 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence            4567888999999999999999987655555566554443 5778999999999999999988654432211        


Q ss_pred             CCe-EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          441 NKI-TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       441 ~~I-~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      ..| ...+..+++ ..+.+++.|+..+..|..+....++..-..+...+-++.|-...|+.+...|.|.--+
T Consensus        93 ~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt  163 (354)
T KOG4649|consen   93 ETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVT  163 (354)
T ss_pred             hhhccceEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEc
Confidence            112 223455664 7999999999999999988777777654555555556666334444444445443333

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0065  Score=65.68  Aligned_cols=91  Identities=19%  Similarity=0.207  Sum_probs=74.7

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      -.|.-+.|+|.-.++|++..+|.|.+..+.-                                              ..+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~----------------------------------------------qRl   54 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW----------------------------------------------QRL   54 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEecc----------------------------------------------cee
Confidence            4578899999999999999999998887652                                              224


Q ss_pred             eeeeccccceE-EEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE--eeCCCcEEEEEEee
Q 005956          303 QELHGHKGDVL-DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV--FDHHNYVTCVQFNP  359 (667)
Q Consensus       303 ~~l~gh~~~V~-~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~--~~h~~~V~~l~f~p  359 (667)
                      .++.-|...++ +++|.||| .|+.|-.||+|++.|++++..+..  +.....|.++.|.+
T Consensus        55 wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   55 WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            44444556666 99999999 899999999999999999988887  45677888888864

>smart00320 WD40 WD40 repeats

Probab=96.67  E-value=0.0035  Score=41.13  Aligned_cols=37  Identities=41%  Similarity=0.733  Sum_probs=32.3

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ  336 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd  336 (667)
                      .+...+..|...|.++.|++++ .+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3456677899999999999987 999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.66  E-value=0.12  Score=58.47  Aligned_cols=185  Identities=11%  Similarity=0.076  Sum_probs=97.7

Q ss_pred             cccceEEEEecCCC-eEEEEe------CCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC-------
Q 005956          308 HKGDVLDLAWSNSN-YLLSCS------MDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-------  371 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s------~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D-------  371 (667)
                      ....+.+.+.+|+| .++...      .|.  .|.+++... .. ..+......+.-.|+| ++..+++....       
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEe
Confidence            33467889999999 444333      244  444445432 22 2222233478889999 87766666432       


Q ss_pred             -----CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEE---EEecCCcceee-eEeeccccCcCCCC
Q 005956          372 -----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF---YKASGNDLKLE-KVDFHDRKKTSGNK  442 (667)
Q Consensus       372 -----g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l---~d~~~~~~~~~-~~~~~~~~~~~~~~  442 (667)
                           +.+.+.++..+....  .....|..+.|+|||..++... +|.|.+   -....+..... ...+.   ......
T Consensus       425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~~  498 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG---PGLGDT  498 (591)
T ss_pred             ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee---cccCCc
Confidence                 233333444443332  3456799999999999998866 467766   33333332221 11111   111234


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEE--CCcceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILD--GVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd--~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      +..+.|.+++ . |+++..++...+|.  +.-..... ........+.+++-+++  -|+.+..++
T Consensus       499 ~~~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        499 AVSLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             cccceEecCC-E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence            6889999986 4 44555555444554  32111111 11112445556665542  344444455

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.64  E-value=0.38  Score=53.46  Aligned_cols=155  Identities=15%  Similarity=0.149  Sum_probs=92.6

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEeEEeeCCCc------EE-EEEEeeCCCCEEEEEe---------cCCeEEEEecCCCeE
Q 005956          321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------VT-CVQFNPIDDNYFISGS---------IDGKVRIWGVCEKRV  384 (667)
Q Consensus       321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~------V~-~l~f~p~d~~~l~sgs---------~Dg~v~iwdl~~~~~  384 (667)
                      +.++.++.++.|.-+|..+++.+..+.....      +. ...+.   +..++.++         .++.|..+|..+++.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            6788888999999999999999988763332      11 12222   24455554         367899999999887


Q ss_pred             EEecccC-C--------------------ce-EEEEEeeCCCEEEEEecCC------------------cEEEEEecCCc
Q 005956          385 VDWADVR-D--------------------VI-SAICYIPDGKGFIVGSITG------------------TCHFYKASGND  424 (667)
Q Consensus       385 ~~~~~~~-~--------------------~v-~~v~~spdg~~l~~gs~dg------------------~i~l~d~~~~~  424 (667)
                      +-..... .                    .+ ...++.+.+..+++++.++                  .+.-+|+.+++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            6422211 0                    01 1345555667888887665                  68888998887


Q ss_pred             ceeee-Eeecccc--CcCCCC-eEEEEEccCCC--eEEEEEeCCCcEEEEECCcceeeEEe
Q 005956          425 LKLEK-VDFHDRK--KTSGNK-ITGIQFSRDES--QRIMITSEDSKLRILDGVDVIHKFKG  479 (667)
Q Consensus       425 ~~~~~-~~~~~~~--~~~~~~-I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~~~~~~~~  479 (667)
                      ..... ...+...  .....+ +..+. .-+|.  ..+++++.+|.+..+|..+.....+.
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence            76541 1111000  000011 11111 01221  36788889999999998876655543

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.64  E-value=0.027  Score=61.08  Aligned_cols=134  Identities=13%  Similarity=0.058  Sum_probs=76.3

Q ss_pred             cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       390 ~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      ....+..+.++|+|+.+++ +.+|.-.+|.........            .+.-..++|.+.+  .+++-...+.|.|+.
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~------------~G~g~~~vw~~~n--~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA------------FGSGLSFVWSSRN--RYAVLESSSTIKIYK   95 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE------------EEE-SEEEE-TSS--EEEEE-TTS-EEEEE
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc------------cCceeEEEEecCc--cEEEEECCCeEEEEE
Confidence            3445889999999999998 668888888843322211            1345678898864  577777788999975


Q ss_pred             CCccee--eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956          470 GVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       470 ~~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      -.+...  .++.   ...+..+-.   |..|+..+.+ .|.+||++++.......... ...+.|+++|..+|+.....
T Consensus        96 n~~~~~~k~i~~---~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~  166 (443)
T PF04053_consen   96 NFKNEVVKSIKL---PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDS  166 (443)
T ss_dssp             TTEE-TT--------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-S
T ss_pred             cCccccceEEcC---CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCe
Confidence            332222  3332   223444432   8888777654 89999999987655544332 46779999999999986554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.01  Score=64.17  Aligned_cols=91  Identities=16%  Similarity=0.183  Sum_probs=76.8

Q ss_pred             ccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEE-EEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956          309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~-~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      ...|.-+.|+|.- .+|++..+|.|.+..+. .+.+.++. +...++ +++|.| ||+.|+.|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            3467889999988 99999999999999998 77777777 777777 999999 9999999999999999999998876


Q ss_pred             Ee--cccCCceEEEEEee
Q 005956          386 DW--ADVRDVISAICYIP  401 (667)
Q Consensus       386 ~~--~~~~~~v~~v~~sp  401 (667)
                      ..  ......|.++-|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            54  44556677777763

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.44  E-value=1.6  Score=47.30  Aligned_cols=193  Identities=15%  Similarity=0.147  Sum_probs=103.1

Q ss_pred             ceEEEEecCCC-eEE-EEeCCC----cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC-----------e
Q 005956          311 DVLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-----------K  373 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~-s~s~Dg----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg-----------~  373 (667)
                      .+....++|++ +++ +-+..|    +|+++|+.+++.+...-.......+.|.+ +++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence            34567889999 555 434444    59999999997765431222223499999 777766665433           3


Q ss_pred             EEEEecCCCe----EEEecccCCc-eEEEEEeeCCCEEEEEecCC----cEEEEEecCC---cceeeeEeeccccCcCCC
Q 005956          374 VRIWGVCEKR----VVDWADVRDV-ISAICYIPDGKGFIVGSITG----TCHFYKASGN---DLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       374 v~iwdl~~~~----~~~~~~~~~~-v~~v~~spdg~~l~~gs~dg----~i~l~d~~~~---~~~~~~~~~~~~~~~~~~  441 (667)
                      |+.|.+.+..    ++.-...... ...+..++|++++++....+    .+.+.++...   ......+....     .+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-----~~  278 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-----DG  278 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-----SS
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-----Cc
Confidence            7888887653    2222222222 66788999999988755433    4666677654   22222222211     12


Q ss_pred             CeEEEEEccCCCeEEEEEeC---CCcEEEEECCccee---eEEeCCCCC--CeEEEEEcCCCCEEEEE-eCCC--cEEEE
Q 005956          442 KITGIQFSRDESQRIMITSE---DSKLRILDGVDVIH---KFKGLPKSG--SQMSASFTTTGKHIISI-GDDC--RVYVW  510 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~---dg~I~iwd~~~~~~---~~~~~~~~~--~v~~v~~spdg~~l~sg-s~Dg--~I~iW  510 (667)
                      ....+... . ..+++.+..   .+.|...++.....   ......+..  .+..+..  .+.+|+.. -.++  .|+++
T Consensus       279 ~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  279 VEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             -EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence            23334333 3 345555533   35666677664431   112222333  3444443  45555544 4444  68889


Q ss_pred             EcC
Q 005956          511 NYD  513 (667)
Q Consensus       511 d~~  513 (667)
                      ++.
T Consensus       355 ~~~  357 (414)
T PF02897_consen  355 DLD  357 (414)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.41  E-value=0.35  Score=51.82  Aligned_cols=174  Identities=15%  Similarity=0.143  Sum_probs=92.7

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ...++...++|++++.|.-| ++|.|.++|.+.|.|+...........                                
T Consensus        79 ~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i--------------------------------  125 (395)
T PF08596_consen   79 LTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENI--------------------------------  125 (395)
T ss_dssp             EEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEG--------------------------------
T ss_pred             hhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccc--------------------------------
Confidence            34455679999999998555 999999999999999965322211000                                


Q ss_pred             ccccCCcceeeeccccceEEEEec-----CCC----eEEEEeCCCcEEEEecC--C-CeE----eEEe-eCCCcEEEEE-
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWS-----NSN----YLLSCSMDKTVRMWQVG--C-NQC----LNVF-DHHNYVTCVQ-  356 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s-----~~~----~l~s~s~Dg~I~iWd~~--~-~~~----~~~~-~h~~~V~~l~-  356 (667)
                         ..  ...-......|+++.|.     .|+    .|+.|...|.+.+|.+.  . +..    .... .+.+.|..+. 
T Consensus       126 ---~~--~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~  200 (395)
T PF08596_consen  126 ---RE--SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP  200 (395)
T ss_dssp             ---GG----T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE
T ss_pred             ---cc--cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE
Confidence               00  00001233457777775     233    78899999999999874  1 211    1122 3556666555 


Q ss_pred             EeeC--------------------CCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEe-----eCCCEEEEEe
Q 005956          357 FNPI--------------------DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----PDGKGFIVGS  410 (667)
Q Consensus       357 f~p~--------------------d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~s-----pdg~~l~~gs  410 (667)
                      |+..                    -..+++. ..+..++++...+.+... ..........+++-     ..+..|++-.
T Consensus       201 i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~  279 (395)
T PF08596_consen  201 INADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF  279 (395)
T ss_dssp             EETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred             EECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE
Confidence            3221                    0123444 446789999988776554 22222233344552     3567888889


Q ss_pred             cCCcEEEEEecCCccee
Q 005956          411 ITGTCHFYKASGNDLKL  427 (667)
Q Consensus       411 ~dg~i~l~d~~~~~~~~  427 (667)
                      .+|.+++|.+..-+...
T Consensus       280 ~~G~i~i~SLP~Lkei~  296 (395)
T PF08596_consen  280 NNGSIRIYSLPSLKEIK  296 (395)
T ss_dssp             TTSEEEEEETTT--EEE
T ss_pred             CCCcEEEEECCCchHhh
Confidence            99999999998765543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.32  E-value=0.3  Score=55.18  Aligned_cols=144  Identities=10%  Similarity=0.108  Sum_probs=79.1

Q ss_pred             eEEEEecCCC-eEEEEeCC------------CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEE--
Q 005956          312 VLDLAWSNSN-YLLSCSMD------------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI--  376 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~D------------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i--  376 (667)
                      .+.-.|+|+| .|++....            +.+.+.+++.+....  .....|..+.|+| |+..++... ++.|++  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence            6777888886 55554322            233333444443332  3356799999999 999887765 577777  


Q ss_pred             -EecCCCeEE-----Eec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          377 -WGVCEKRVV-----DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       377 -wdl~~~~~~-----~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                       -....+...     .+. .....+..+.|.+++. |+++..++.-.+|.+.-.......+  ..  .....++..++-+
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~~--~~--~n~~~~v~~vaa~  549 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDAL--PS--RNLSAPVVAVAAS  549 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcccccc--CC--CCccCceEEEecC
Confidence             443444411     111 2334468899999987 4566666555555544222111110  00  0012456666666


Q ss_pred             cCCCeEEEEEeCCCcEEE
Q 005956          450 RDESQRIMITSEDSKLRI  467 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~i  467 (667)
                      ++   .++++..++.+.+
T Consensus       550 ~~---~iyv~~~~g~~~l  564 (591)
T PRK13616        550 PS---TVYVTDARAVLQL  564 (591)
T ss_pred             Cc---eEEEEcCCceEEe
Confidence            53   4555566664443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.30  E-value=1.8  Score=46.10  Aligned_cols=154  Identities=16%  Similarity=0.240  Sum_probs=77.1

Q ss_pred             cCCC-eEEEEe--CC----CcEEEEecCCCeEeEEeeC----CCcEEEEEEeeCCCCEEEEEec----------------
Q 005956          318 SNSN-YLLSCS--MD----KTVRMWQVGCNQCLNVFDH----HNYVTCVQFNPIDDNYFISGSI----------------  370 (667)
Q Consensus       318 s~~~-~l~s~s--~D----g~I~iWd~~~~~~~~~~~h----~~~V~~l~f~p~d~~~l~sgs~----------------  370 (667)
                      -|+| .++|+-  .+    |-+.+.|-++.+.+.....    ...-+.+-|.| ..+.+++...                
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhh
Confidence            3566 666542  22    4577888888777776642    33566778888 7788887642                


Q ss_pred             ----CCeEEEEecCCCeEEEecccC---CceEEEEEeeC--CCEEEEEe-cCCcE-EEEEecCCcceee-eEeeccccC-
Q 005956          371 ----DGKVRIWGVCEKRVVDWADVR---DVISAICYIPD--GKGFIVGS-ITGTC-HFYKASGNDLKLE-KVDFHDRKK-  437 (667)
Q Consensus       371 ----Dg~v~iwdl~~~~~~~~~~~~---~~v~~v~~spd--g~~l~~gs-~dg~i-~l~d~~~~~~~~~-~~~~~~~~~-  437 (667)
                          ..++.+||+.+.+.++..+..   ..+..+.|..+  ..+-++|+ ..++| ++|....+....+ .+.+...+. 
T Consensus       217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~  296 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE  296 (461)
T ss_dssp             HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred             cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence                358999999999988766554   34556666543  33333333 33444 4455466666555 333332211 


Q ss_pred             ------------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956          438 ------------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       438 ------------~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                                  ....-|+.|..|.|+..+.+++=.+|.|+.||+.+
T Consensus       297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence                        01355899999999855555556799999999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.26  E-value=0.89  Score=45.51  Aligned_cols=165  Identities=10%  Similarity=0.177  Sum_probs=112.2

Q ss_pred             eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      .|-...|.++.|+|+. .|++......-.||=...|+.++++.  .-.....|.+.. ++++.++--.+..+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence            3455569999999998 88888888888888778899999886  223445667776 6777777777888888877654


Q ss_pred             e-EE-------E--eccc-CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEee-ccc-cCcCCCCeEEEEE
Q 005956          383 R-VV-------D--WADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDF-HDR-KKTSGNKITGIQF  448 (667)
Q Consensus       383 ~-~~-------~--~~~~-~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~-~~~-~~~~~~~I~~l~~  448 (667)
                      . ++       .  ...+ +.....++|.|..+.|.++-...-+.||.......... .... +.. ..-.-..|.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            2 11       1  1112 45677899999999999998888888888764332111 1100 000 0001245778899


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECC
Q 005956          449 SRDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~  471 (667)
                      .+....+++.+.+++.+.-.|..
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecC
Confidence            88766777788888888888765

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.15  E-value=1.5  Score=43.68  Aligned_cols=188  Identities=13%  Similarity=0.122  Sum_probs=107.1

Q ss_pred             ccEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          223 GCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      .-...+.|..+|.++-+.|.-|  .|+.+|+.++........+.                            ..|.    
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~----------------------------~~Fg----   92 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP----------------------------RYFG----   92 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT----------------------------T--E----
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc----------------------------cccc----
Confidence            3345688878888888888766  78889988765432211111                            0000    


Q ss_pred             cceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                        .-+.-+.+.+..|.|          .++...+||..+-+.+..+.....=+.++.   +++.|+.......++++|..
T Consensus        93 --EGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~  157 (264)
T PF05096_consen   93 --EGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPE  157 (264)
T ss_dssp             --EEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSCEEEE-SSSEEEEE-TT
T ss_pred             --eeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCEEEEECCccceEEECCc
Confidence              001112334555554          457899999999999999987777788884   66777776667789999987


Q ss_pred             CCeEEE---eccc---CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc---------cCcCCCCeEE
Q 005956          381 EKRVVD---WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---------KKTSGNKITG  445 (667)
Q Consensus       381 ~~~~~~---~~~~---~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~---------~~~~~~~I~~  445 (667)
                      +-+...   ....   -..++-+.|. +|...|=.=....|...|..++..... +.+.+-         ......-.+.
T Consensus       158 ~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~-iDls~L~~~~~~~~~~~~~~dVLNG  235 (264)
T PF05096_consen  158 TFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW-IDLSGLRPEVGRDKSRQPDDDVLNG  235 (264)
T ss_dssp             T-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE-EE-HHHHHHHTSTTST--TTS-EEE
T ss_pred             ccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE-EEhhHhhhcccccccccccCCeeEe
Confidence            765443   2211   2235666664 565444444556677777777665432 222111         1112356899


Q ss_pred             EEEccCCCeEEEEE
Q 005956          446 IQFSRDESQRIMIT  459 (667)
Q Consensus       446 l~~sp~g~~~l~~~  459 (667)
                      |++.|....++++|
T Consensus       236 IAyd~~~~~l~vTG  249 (264)
T PF05096_consen  236 IAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EeEeCCCCEEEEEe
Confidence            99999875555555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.14  E-value=0.0077  Score=57.48  Aligned_cols=141  Identities=13%  Similarity=0.124  Sum_probs=78.4

Q ss_pred             EEEEecCCeEEEEecCCCeEEE-ecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          365 FISGSIDGKVRIWGVCEKRVVD-WAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~-~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +..-+.|+.|+-++++..+... ... +... ..  .-.-+..+++|+.+|.|.+|..............      ....
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~--v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~  103 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QR--VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEES  103 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc-ee--ecccCceEEeecccceEEEecCCccchHHHhhhc------cccc
Confidence            4445667888888776544321 111 1111 11  1123568999999999999988733222111110      1123


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEeCCCC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKS-GSQMSASFTTTGKHIISI--GDDCRVYVWNYDEL  515 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~-~~v~~v~~spdg~~l~sg--s~Dg~I~iWd~~~~  515 (667)
                      |-++.-.-+.+.+..++..+|.|+.|+..... .-+.++ |. .++.....+..+++|+.+  |.|..++.|++...
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~-h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ-HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccCceeeeecc-ccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            33332222223588999999999999976322 223333 33 455555555566666666  66777777776543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.97  E-value=0.44  Score=53.86  Aligned_cols=195  Identities=16%  Similarity=0.170  Sum_probs=103.4

Q ss_pred             eEEEEecCCCeEEEEeCC------CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe-----EEEEecC
Q 005956          312 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGVC  380 (667)
Q Consensus       312 V~~l~~s~~~~l~s~s~D------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~-----v~iwdl~  380 (667)
                      -.+++...+...++||.|      .++..||..+++-...-.-...-..+.....++.+.++|+.||.     |-.||..
T Consensus       325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence            344555554478888888      35778888877644322211111111111127889999999864     7778887


Q ss_pred             CCeEEEecccCCceEEEEE-eeCCCEEEEEecCC------cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          381 EKRVVDWADVRDVISAICY-IPDGKGFIVGSITG------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       381 ~~~~~~~~~~~~~v~~v~~-spdg~~l~~gs~dg------~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      +.+-............... .-+|...++|+.++      ++..||..++...... .+...     ..-..++...  .
T Consensus       405 ~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~-~M~~~-----R~~~g~a~~~--~  476 (571)
T KOG4441|consen  405 TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA-PMNTR-----RSGFGVAVLN--G  476 (571)
T ss_pred             CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC-Ccccc-----cccceEEEEC--C
Confidence            7765443333222222222 23788888888665      5678888887765431 11111     1112233333  3


Q ss_pred             eEEEEEeCCC-----cEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005956          454 QRIMITSEDS-----KLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL  515 (667)
Q Consensus       454 ~~l~~~s~dg-----~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg-----~I~iWd~~~~  515 (667)
                      .++++|+.|+     +|..||.....-.... .........++ .-+++..++|+.||     +|..||..+.
T Consensus       477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCCC
Confidence            6788888776     3667776532211111 11111111122 23566777777765     4555654443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.094  Score=55.92  Aligned_cols=137  Identities=15%  Similarity=0.223  Sum_probs=92.6

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCC-------EEEEEecCCeEEEEecCCCe--EEEec----
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-------YFISGSIDGKVRIWGVCEKR--VVDWA----  388 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~-------~l~sgs~Dg~v~iwdl~~~~--~~~~~----  388 (667)
                      .|.++..-..|+-.|++.|+.+........|.-+.+.| +.+       .-+.|-.|..|.-||.+-..  .+.+.    
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            55667777789999999999999998666688888887 432       23446667889999987432  22222    


Q ss_pred             -ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956          389 -DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  467 (667)
Q Consensus       389 -~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i  467 (667)
                       .......|++-..+| +|++|+.+|.|++||-- +......      ...-+.+|+.+..+.+| .+|++++ +..+.+
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTA------lPgLG~~I~hVdvtadG-Kwil~Tc-~tyLlL  496 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTA------LPGLGDAIKHVDVTADG-KWILATC-KTYLLL  496 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhc------ccccCCceeeEEeeccC-cEEEEec-ccEEEE
Confidence             223345666666665 89999999999999973 3222222      22335889999999997 5555444 445555


Q ss_pred             EE
Q 005956          468 LD  469 (667)
Q Consensus       468 wd  469 (667)
                      .+
T Consensus       497 i~  498 (644)
T KOG2395|consen  497 ID  498 (644)
T ss_pred             EE
Confidence            54

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.94  E-value=3.8  Score=45.93  Aligned_cols=77  Identities=8%  Similarity=-0.098  Sum_probs=43.7

Q ss_pred             cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCcEEEE
Q 005956          464 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       464 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~~lav  541 (667)
                      .|.-+|+.+.....+.........+. +.-.+..++.++.||.++.+|.++++........  ...+-+.|..+|+..++
T Consensus       442 ~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~  520 (527)
T TIGR03075       442 SLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVA  520 (527)
T ss_pred             eEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEE
Confidence            45556665554444332111111111 1224557777888999999999999987654333  23334566677764433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.79  E-value=2.6  Score=44.40  Aligned_cols=219  Identities=13%  Similarity=0.076  Sum_probs=104.7

Q ss_pred             EEecCCC--eEEEEeCCC--cEEEEecCCCeEeEEeeCC-CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc
Q 005956          315 LAWSNSN--YLLSCSMDK--TVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  389 (667)
Q Consensus       315 l~~s~~~--~l~s~s~Dg--~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~  389 (667)
                      =+|.++|  +|+.+..||  .+.+.|+.+++..+..... .......++| +++.++.......|+-.|+.+.+...+..
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            3567788  555565566  4666688999888877543 2222456677 66777666666789999999987654333


Q ss_pred             c-CCceEEEEEee--CCCEEEEEec---C-------------------CcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          390 V-RDVISAICYIP--DGKGFIVGSI---T-------------------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       390 ~-~~~v~~v~~sp--dg~~l~~gs~---d-------------------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      . ...+-...|..  |+..++-.-.   +                   ..|.-.|+.+++...  + +..     ...+.
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~--v-~~~-----~~wlg  191 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV--V-FED-----TDWLG  191 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE--E-EEE-----SS-EE
T ss_pred             CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE--E-Eec-----Ccccc
Confidence            3 33333455543  4554432211   1                   123333444443321  1 111     26788


Q ss_pred             EEEEccCCCeEEEEEeCC------CcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEEc
Q 005956          445 GIQFSRDESQRIMITSED------SKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIG-----DDCRVYVWNY  512 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~d------g~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-----~Dg~I~iWd~  512 (667)
                      -++|+|.++..|+-+-+.      ..|.+.+.. ..............+..=-|.|||..|.--+     .+..|.-+|+
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~  271 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP  271 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence            899999877777776542      244444433 1122222222334455556899998776432     3456777888


Q ss_pred             CCCCccccccccCccceeEEccCCcEEEEec
Q 005956          513 DELCFPSSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      .+++....... .......-++||..++---
T Consensus       272 ~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG  301 (386)
T PF14583_consen  272 DTGERRRLMEM-PWCSHFMSSPDGKLFVGDG  301 (386)
T ss_dssp             TT--EEEEEEE--SEEEEEE-TTSSEEEEEE
T ss_pred             CCCCceEEEeC-CceeeeEEcCCCCEEEecC
Confidence            88765432221 1223344567888776643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.74  E-value=3  Score=43.16  Aligned_cols=143  Identities=14%  Similarity=0.115  Sum_probs=85.6

Q ss_pred             eEEEEeCCCcEEEEecC-CCeEeEEe----e-CCCcEE-EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE---ecc--
Q 005956          322 YLLSCSMDKTVRMWQVG-CNQCLNVF----D-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---WAD--  389 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~-~~~~~~~~----~-h~~~V~-~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~---~~~--  389 (667)
                      .+.+-+.||++.-..+. .|+.....    . ..+++. .-++.. .+..++.-+.+|.|+-.|+.......   +.-  
T Consensus       149 ~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  149 GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            57788888988888886 45544322    1 122222 334444 55566667899999999988765432   110  


Q ss_pred             --------cCCceEEEEEeeCCCEEEEEecCC----------cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          390 --------VRDVISAICYIPDGKGFIVGSITG----------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       390 --------~~~~v~~v~~spdg~~l~~gs~dg----------~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                              ..+.-.-+++++..+.|.+.-..|          .|-+||+.+.+... .+.+.       .++.+|+.+.+
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-Ri~l~-------~~~~Si~Vsqd  299 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-RIPLE-------HPIDSIAVSQD  299 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-EEEEE-------EEESEEEEESS
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE-EEeCC-------CccceEEEccC
Confidence                    012345577877666666543322          46677777666543 33332       35779999998


Q ss_pred             CCeEEEEEe-CCCcEEEEECCcc
Q 005956          452 ESQRIMITS-EDSKLRILDGVDV  473 (667)
Q Consensus       452 g~~~l~~~s-~dg~I~iwd~~~~  473 (667)
                      ...+|++.+ .++.|.+||..+.
T Consensus       300 ~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  300 DKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             SS-EEEEEETTTTEEEEEETTT-
T ss_pred             CCcEEEEEcCCCCeEEEEeCcCC
Confidence            766776654 5789999998754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=0.46  Score=47.11  Aligned_cols=184  Identities=12%  Similarity=0.196  Sum_probs=104.2

Q ss_pred             EEcCCCCEEEEEEC-----CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          229 KFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       229 ~fspdg~~Latgs~-----Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      .|||||.+|...-.     -|.|-|||....                                            ...+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--------------------------------------------fqrvg  155 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--------------------------------------------FQRVG  155 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccc--------------------------------------------cceec
Confidence            59999999887643     378899988752                                            23355


Q ss_pred             eeeccccceEEEEecCCC-eEEEEeC------------------CCcEEEEecCCCeEeEEee-----CCCcEEEEEEee
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSM------------------DKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP  359 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~------------------Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p  359 (667)
                      ++..|.-.-..+.|.+|| .++.+..                  .-++.+.|..++..+....     +...|..++..+
T Consensus       156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~  235 (366)
T COG3490         156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR  235 (366)
T ss_pred             ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence            666777677778888888 3333221                  1233444444554443321     344677777776


Q ss_pred             CCCCEEEEEecCCe-----EEEEecCCCeEEEec--------ccCCceEEEEEeeCCCEEEEEecCCc-EEEEEecCCcc
Q 005956          360 IDDNYFISGSIDGK-----VRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDL  425 (667)
Q Consensus       360 ~d~~~l~sgs~Dg~-----v~iwdl~~~~~~~~~--------~~~~~v~~v~~spdg~~l~~gs~dg~-i~l~d~~~~~~  425 (667)
                       ++..++.+-..|.     -.+=-...++.+...        .....|-+++.+.+..+++..+-.|+ ..+||..++..
T Consensus       236 -dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         236 -DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             -CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence             6665555443321     001111122222211        22345778888876667777666554 56899999877


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      ..... +        .....+.-...   -+++++.+|.+.++.
T Consensus       315 v~~a~-l--------~daaGva~~~~---gf~vssg~G~~~~~s  346 (366)
T COG3490         315 VSEAA-L--------PDAAGVAAAKG---GFAVSSGQGRIIFYS  346 (366)
T ss_pred             Eeccc-c--------cccccceeccC---ceEEecCCceEEecc
Confidence            54310 1        11233333333   366677778887764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.65  E-value=2.3  Score=43.13  Aligned_cols=137  Identities=13%  Similarity=0.148  Sum_probs=85.4

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE--------------
Q 005956          321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--------------  386 (667)
Q Consensus       321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~--------------  386 (667)
                      ..|+.|+.+| |.++++..........+...|..+...| +-+.+++-+ |+.++++++..-....              
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~   84 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP   84 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence            3888898888 9999994333333333444499999999 666666654 5999999987644332              


Q ss_pred             -ecccCCceEEEE--EeeCCCEEEEEecCCcEEEEEecCCcc----eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          387 -WADVRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       387 -~~~~~~~v~~v~--~spdg~~l~~gs~dg~i~l~d~~~~~~----~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                       .......+..++  -...+...++......|.+|.......    ....+.+.       ..+..++|.++   .++.+
T Consensus        85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~~~---~i~v~  154 (275)
T PF00780_consen   85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFLGN---KICVG  154 (275)
T ss_pred             ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEeCC---EEEEE
Confidence             112223344444  123444455555566999999876422    22233332       67899999954   56666


Q ss_pred             eCCCcEEEEECC
Q 005956          460 SEDSKLRILDGV  471 (667)
Q Consensus       460 s~dg~I~iwd~~  471 (667)
                      ..+ ...+.|+.
T Consensus       155 ~~~-~f~~idl~  165 (275)
T PF00780_consen  155 TSK-GFYLIDLN  165 (275)
T ss_pred             eCC-ceEEEecC
Confidence            544 47778876

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=95.63  E-value=0.41  Score=54.10  Aligned_cols=183  Identities=9%  Similarity=0.082  Sum_probs=91.6

Q ss_pred             eEEEEeCC------CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCC-----eEEEEecCCCeEEEec
Q 005956          322 YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDWA  388 (667)
Q Consensus       322 ~l~s~s~D------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~~~~~~~  388 (667)
                      .++.||.+      .++..||..++.-...-.  ....-.+++..  ++.+.+.|+.++     .+..||..+.+-....
T Consensus       306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence            66666653      347788887765432211  11111122222  678888888764     4888998887654433


Q ss_pred             ccCCceEE-EEEeeCCCEEEEEecCC-----------------------cEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          389 DVRDVISA-ICYIPDGKGFIVGSITG-----------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       389 ~~~~~v~~-v~~spdg~~l~~gs~dg-----------------------~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      ........ ....-+|+..++|+.++                       .+..||..++...... .+...    ... .
T Consensus       384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~----r~~-~  457 (557)
T PHA02713        384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTG----TIR-P  457 (557)
T ss_pred             CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCcc----ccc-C
Confidence            32221111 11123678888887653                       4677888776654221 11100    011 1


Q ss_pred             EEEEccCCCeEEEEEeCC------CcEEEEECCc-c-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC
Q 005956          445 GIQFSRDESQRIMITSED------SKLRILDGVD-V-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC--RVYVWNYDE  514 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~d------g~I~iwd~~~-~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg--~I~iWd~~~  514 (667)
                      +++.. +| .+.++|+.+      ..+..||..+ . -..............++. -+|+..++||.|+  .+..||..+
T Consensus       458 ~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        458 GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             cEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcCccc
Confidence            22222 22 566667654      2466788664 2 111111111111112222 3678888888887  566666655


Q ss_pred             C
Q 005956          515 L  515 (667)
Q Consensus       515 ~  515 (667)
                      .
T Consensus       535 ~  535 (557)
T PHA02713        535 Y  535 (557)
T ss_pred             c
Confidence            4

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.54  E-value=6.5  Score=45.66  Aligned_cols=271  Identities=13%  Similarity=0.097  Sum_probs=140.0

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ..|.-..|--|..||.++..||.+.-+.+.....   .++.......+...-.++-+......       .++....+|.
T Consensus       584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg---~lsd~Kk~~lGt~P~~Lr~f~sk~~t-------~vfa~sdrP~  653 (1096)
T KOG1897|consen  584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTG---QLSDRKKVTLGTQPISLRTFSSKSRT-------AVFALSDRPT  653 (1096)
T ss_pred             hheeeEEeeccceEEEEEcCCceEEEEEEEcccc---eEccccccccCCCCcEEEEEeeCCce-------EEEEeCCCCE
Confidence            4566666666788999999999988776553211   11111111111222222222211111       1222222332


Q ss_pred             eeeeccc---------cceEE-EEecCCC---eEEEEeCCCcEEEEecCCCeE--eEEeeCCCcEEEEEEeeCCCCEEEE
Q 005956          303 QELHGHK---------GDVLD-LAWSNSN---YLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       303 ~~l~gh~---------~~V~~-l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~--~~~~~h~~~V~~l~f~p~d~~~l~s  367 (667)
                      ..+....         ..+.. +.|+.+.   .|+++.. +.+++..++.-+.  +++.........+++.+ ....+.+
T Consensus       654 viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v  731 (1096)
T KOG1897|consen  654 VIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGV  731 (1096)
T ss_pred             EEEecCCcEEEeccchHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCCCChhheEecc-cceEEEE
Confidence            2221110         11111 2233332   3444443 5677776654332  23344445556666665 3333333


Q ss_pred             EecC--------------CeEEEEecCCCeEEEeccc--CC---ceEEEEEeeC-CCEEEEEec----------CCcEEE
Q 005956          368 GSID--------------GKVRIWGVCEKRVVDWADV--RD---VISAICYIPD-GKGFIVGSI----------TGTCHF  417 (667)
Q Consensus       368 gs~D--------------g~v~iwdl~~~~~~~~~~~--~~---~v~~v~~spd-g~~l~~gs~----------dg~i~l  417 (667)
                      .+..              ..++++|-.+-++......  ..   .+.++.|..| +.++++|+.          .|.|.+
T Consensus       732 ~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIiv  811 (1096)
T KOG1897|consen  732 LSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIV  811 (1096)
T ss_pred             EecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEE
Confidence            3221              2477788777776643322  22   2444558777 778888874          588899


Q ss_pred             EEecC-Ccceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC
Q 005956          418 YKASG-NDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  495 (667)
Q Consensus       418 ~d~~~-~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg  495 (667)
                      |.... +++... ....       .+.+.++..-. | ++++  +-+..|++|+..+....-..-.+..++..+...-.|
T Consensus       812 fe~~e~~~L~~v~e~~v-------~Gav~aL~~fn-g-kllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g  880 (1096)
T KOG1897|consen  812 FEFEELNSLELVAETVV-------KGAVYALVEFN-G-KLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKG  880 (1096)
T ss_pred             EEEecCCceeeeeeeee-------ccceeehhhhC-C-eEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecC
Confidence            98877 333222 1111       24455544332 2 3443  445679999876442222222366778888888999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCC
Q 005956          496 KHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       496 ~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      ..|+.|.--+.|.+-.+...+
T Consensus       881 deI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  881 DEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             cEEEEeeccceEEEEEEeccC
Confidence            999999888877776665544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.41  E-value=1.6  Score=49.41  Aligned_cols=184  Identities=14%  Similarity=0.144  Sum_probs=101.9

Q ss_pred             eEEEEeCC------CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC------CeEEEEecCCCeEEEe
Q 005956          322 YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDW  387 (667)
Q Consensus       322 ~l~s~s~D------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~~~~~~  387 (667)
                      .++.||.+      ..+..+|..++.-.....  ....-.+++..  ++.++++|+.|      .++..||..+++-...
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            56666666      368888888775444332  33345556665  47888999988      3578899988875443


Q ss_pred             cccCCceEEEEE-eeCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          388 ADVRDVISAICY-IPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       388 ~~~~~~v~~v~~-spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      ......-..+.. .-+|...++|+.||     ++..||..+++........        ....+.....-++.+.++|+.
T Consensus       365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--------~~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--------TRRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC--------cceeeeEEEEECCEEEEEcCc
Confidence            332222122222 23788899999987     4778888877664331000        111222221212467777775


Q ss_pred             CC------cEEEEECCcceeeEEeCCCCC-CeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCC
Q 005956          462 DS------KLRILDGVDVIHKFKGLPKSG-SQMSASFTTTGKHIISIGDDC-----RVYVWNYDELC  516 (667)
Q Consensus       462 dg------~I~iwd~~~~~~~~~~~~~~~-~v~~v~~spdg~~l~sgs~Dg-----~I~iWd~~~~~  516 (667)
                      ++      .+..||..+..-......... .-..++ .-++...+.||.|+     +|..||..+.+
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence            54      466777553221111100111 111122 23677777888776     37778877654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.37  E-value=4  Score=42.17  Aligned_cols=219  Identities=12%  Similarity=0.024  Sum_probs=119.8

Q ss_pred             EecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE-EEecc---
Q 005956          316 AWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWAD---  389 (667)
Q Consensus       316 ~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~-~~~~~---  389 (667)
                      .|.++.  ++.+--..+.|.-|+..+++. ..+.+...+.++.... .+..|+++.  .-+++++...+.. ..+..   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence            456655  444555677888888875543 3444455555555544 444555543  3467777765554 22111   


Q ss_pred             --cCCceEEEEEeeCCCEEEEEec-----C----CcEEEEEec-CCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          390 --VRDVISAICYIPDGKGFIVGSI-----T----GTCHFYKAS-GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       390 --~~~~v~~v~~spdg~~l~~gs~-----d----g~i~l~d~~-~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                        .....+.+...|+|.+.+....     .    ..-.+|-+. .+........       +-..-++|+|+||+..+++
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-------~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-------DLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC-------cEEecCceEECCCCCEEEE
Confidence              1244677888899876665333     0    111344444 2222111100       0133468999999865666


Q ss_pred             EEeCCCcEEEEECCc-------ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCCcccccccc-Cccc
Q 005956          458 ITSEDSKLRILDGVD-------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDELCFPSSKQKN-SVRS  528 (667)
Q Consensus       458 ~~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg-~I~iWd~~~~~~~~~~~~~-~~~~  528 (667)
                      +=+..+.|+-|+...       ....+......+..-.++...+|.+-+++..+| .|.+|+.+ ++........ ...+
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t  258 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT  258 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence            666678888887641       111111111345566778888888776555444 89999988 5543332222 4444


Q ss_pred             eeEEc-cCCcEEEEecCCC
Q 005956          529 CEHFF-SEGVSVAVQWPGI  546 (667)
Q Consensus       529 ~~~fs-~dg~~lav~w~~~  546 (667)
                      +++|- ++...|-+.....
T Consensus       259 ~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         259 NPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             cceEeCCCcCEEEEEecCC
Confidence            55554 4455555544433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.19  E-value=3.8  Score=40.91  Aligned_cols=185  Identities=8%  Similarity=0.064  Sum_probs=107.0

Q ss_pred             cceEEEEecCCC-eEEEEeCCC--cEEEEecCCCeEeEEeeCCC--cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956          310 GDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~Dg--~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~  384 (667)
                      .-...+.|..++ ++-+.+.-|  .|+.+|+.+++.+.......  .--.+...  ++.++...-.++...+||..+-+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            456678886677 666777766  79999999999887775333  33344554  455666667789999999998887


Q ss_pred             EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       385 ~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                      +......+.=..++  .||+.|+.......++++|..+.+.... .+...+   ..-..++-+.|.. | ...+-.=...
T Consensus       123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g---~pv~~LNELE~i~-G-~IyANVW~td  195 (264)
T PF05096_consen  123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG---RPVSNLNELEYIN-G-KIYANVWQTD  195 (264)
T ss_dssp             EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT---EE---EEEEEEET-T-EEEEEETTSS
T ss_pred             EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC---EECCCcEeEEEEc-C-EEEEEeCCCC
Confidence            76555555555566  6788888887788999999887665443 222222   1123456666653 2 3333333334


Q ss_pred             cEEEEECCcc-----------eeeEEe----CCCCCCeEEEEEcCCCCEEEEEeC
Q 005956          464 KLRILDGVDV-----------IHKFKG----LPKSGSQMSASFTTTGKHIISIGD  503 (667)
Q Consensus       464 ~I~iwd~~~~-----------~~~~~~----~~~~~~v~~v~~spdg~~l~sgs~  503 (667)
                      .|...|..+.           ......    .......+.+++.|..+.|...|.
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            4444554322           111100    112456789999887766655553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.19  E-value=5.6  Score=42.84  Aligned_cols=180  Identities=11%  Similarity=0.155  Sum_probs=95.4

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC--------------------
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--------------------  381 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~--------------------  381 (667)
                      ++..=+.||++.+++-+.-...+.+..---...+.|.+ ..+.|++++.+..+..|....                    
T Consensus       147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~  225 (418)
T PF14727_consen  147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS  225 (418)
T ss_pred             EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence            78888999999999987665555554322334567888 777888888888888885421                    


Q ss_pred             CeEE--E-ecccCCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE------c
Q 005956          382 KRVV--D-WADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF------S  449 (667)
Q Consensus       382 ~~~~--~-~~~~~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~------s  449 (667)
                      ++.+  . .......+..+..-.   ....+++-+. .++.+.+..+ .+.. ...+..      .+.....|      .
T Consensus       226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~~G-~l~~-~krLd~------~p~~~~~Y~~~~~~~  296 (418)
T PF14727_consen  226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLKDNG-SLRF-QKRLDY------NPSCFCPYRVPWYNE  296 (418)
T ss_pred             cccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEcCCC-eEEE-EEecCC------ceeeEEEEEeecccC
Confidence            1111  0 122333444444333   2223333332 2444444432 2211 222211      11222222      2


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEE---EcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSAS---FTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~---~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      ++....+++++.++.+.||.-.+.+-..+.  ...+| ++.   |..-...|++-+.+|.+.+-=+.+
T Consensus       297 ~~~~~~llV~t~t~~LlVy~d~~L~WsA~l--~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  297 PSTRLNLLVGTHTGTLLVYEDTTLVWSAQL--PHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             CCCceEEEEEecCCeEEEEeCCeEEEecCC--CCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            222235889999999999975544333222  22222 333   222345677778888877665544

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.18  E-value=3.6  Score=41.65  Aligned_cols=204  Identities=12%  Similarity=0.123  Sum_probs=114.3

Q ss_pred             ceEEEEecCCC-eEEEEeCCCcEEEEecC------CCeE-eEEee------CCCcEEEEEEeeCCCC------------E
Q 005956          311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQC-LNVFD------HHNYVTCVQFNPIDDN------------Y  364 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~------~~~~-~~~~~------h~~~V~~l~f~p~d~~------------~  364 (667)
                      .-+.|+++|.+ .-++....++..+||..      ..+. +..+.      .....+.+.|+. ...            .
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence            45789999988 66777777899999986      2222 22222      234688888885 222            3


Q ss_pred             EEEEecCCeEEEEecCCC------eEEEeccc-CCc-eEEEEEeeC--CCEEEE-EecCCcEEEEEecCCcceeeeEeec
Q 005956          365 FISGSIDGKVRIWGVCEK------RVVDWADV-RDV-ISAICYIPD--GKGFIV-GSITGTCHFYKASGNDLKLEKVDFH  433 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~------~~~~~~~~-~~~-v~~v~~spd--g~~l~~-gs~dg~i~l~d~~~~~~~~~~~~~~  433 (667)
                      |+.++.||+|.-|...-.      ..+..... ... ...+++-..  +.+|.. --..++|.+||-.=...... -.+.
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~  181 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFI  181 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCcc
Confidence            678889999999974322      11222111 222 334555433  444444 34678899988653322211 0011


Q ss_pred             cccCcCCCCeEEEEEc------------cCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcC------C
Q 005956          434 DRKKTSGNKITGIQFS------------RDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTT------T  494 (667)
Q Consensus       434 ~~~~~~~~~I~~l~~s------------p~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~sp------d  494 (667)
                      .........-..|+--            ++. ..=+.+..-|.|-+||.. +.++++.....-...+.++..|      .
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence            1000001111112111            111 112222334689999976 6667676544555566676644      4


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCc
Q 005956          495 GKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       495 g~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      |.+|+---.||+|..+|..++..
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~~  283 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGAQ  283 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCce
Confidence            66777666799999999987764

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.12  E-value=4.1  Score=40.92  Aligned_cols=165  Identities=12%  Similarity=0.146  Sum_probs=100.1

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.+.+-+..|.++.|+|+.+.|++......-.||=..+++....                                   
T Consensus        78 akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt-----------------------------------  122 (316)
T COG3204          78 AKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT-----------------------------------  122 (316)
T ss_pred             ccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE-----------------------------------
Confidence            344556667799999999999999888777666664443322111                                   


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE----------EeeC-CCcEEEEEEeeCCC
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----------VFDH-HNYVTCVQFNPIDD  362 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~----------~~~h-~~~V~~l~f~p~d~  362 (667)
                              ..+.+ -...-.|.|..+| +.++-=.+..+.++.+.....+.          ...+ +.....++|.| .+
T Consensus       123 --------iPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~  192 (316)
T COG3204         123 --------IPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VD  192 (316)
T ss_pred             --------ecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CC
Confidence                    01111 1233456666666 55555667777777665442111          1123 55778999999 66


Q ss_pred             CEEEEEecCCeEEEEecCCCe-EE--E-eccc-------CCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCc
Q 005956          363 NYFISGSIDGKVRIWGVCEKR-VV--D-WADV-------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGND  424 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~-~~--~-~~~~-------~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~  424 (667)
                      ..|+.+-...-+.||.+.... ..  . ...+       -..|..+.|++. +..++.+..++.+.-.|....-
T Consensus       193 ~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         193 HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence            777777777777887765433 11  1 1111       134777888874 5556666677777777776543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.08  E-value=4  Score=41.01  Aligned_cols=158  Identities=13%  Similarity=0.096  Sum_probs=92.2

Q ss_pred             cEEEEEEeeCCCCEEEEEe---cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEE-ecCCcce
Q 005956          351 YVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK-ASGNDLK  426 (667)
Q Consensus       351 ~V~~l~f~p~d~~~l~sgs---~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d-~~~~~~~  426 (667)
                      .+...++++ +++.++...   ....++++..........  ....+....|++++...++...+...+++. .......
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688899999 787766655   333455554433222222  334788889999987777766666666664 3333333


Q ss_pred             eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECC---cc-e----eeEE-eCCCCCCeEEEEEcCCC
Q 005956          427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGV---DV-I----HKFK-GLPKSGSQMSASFTTTG  495 (667)
Q Consensus       427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s--~dg~I~iwd~~---~~-~----~~~~-~~~~~~~v~~v~~spdg  495 (667)
                      ...+.....    ...|+.+.++|||.+..++..  .++.|.|--+.   .. .    .... .......+..++|.+++
T Consensus       102 ~~~v~~~~~----~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  102 PVEVDWPGL----RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             eEEeccccc----CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            223332221    128999999999866555553  34666665321   11 1    1111 11235678999999999


Q ss_pred             CEEEEEeCCC-cEEE-EEcCCC
Q 005956          496 KHIISIGDDC-RVYV-WNYDEL  515 (667)
Q Consensus       496 ~~l~sgs~Dg-~I~i-Wd~~~~  515 (667)
                      .+++.+...+ .+.. ......
T Consensus       178 ~L~V~~~~~~~~~~~~v~~dG~  199 (253)
T PF10647_consen  178 TLVVLGRSAGGPVVRLVSVDGG  199 (253)
T ss_pred             EEEEEeCCCCCceeEEEEccCC
Confidence            8877766543 3443 445444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=0.37  Score=56.03  Aligned_cols=137  Identities=14%  Similarity=0.115  Sum_probs=89.7

Q ss_pred             ceEEEEecCCC---eEEEEeCCCcEEEEecCCCe--------EeEEe----eCCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956          311 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ--------CLNVF----DHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (667)
Q Consensus       311 ~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~--------~~~~~----~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~  375 (667)
                      .|..+...+|+   .++..+.+-.|..||+.+-.        +++..    .......++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            34444445555   34445555678899986432        11111    13345678899996566677788899999


Q ss_pred             EEecCCCe-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          376 IWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       376 iwdl~~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      +..+.... .+.........++++|+|.|+.+++|-..|++.-|....... .   .++.........|.+++|...
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~---~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-S---EIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee-e---cccCCCcCCCcceeEEEEecc
Confidence            88775433 233446677799999999999999999999999987653211 1   112212222578999999876

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.91  E-value=6.4  Score=46.00  Aligned_cols=200  Identities=11%  Similarity=0.078  Sum_probs=112.6

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcE---------EEEEEee---------------CCCCEEEEEecCCeEE
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYV---------TCVQFNP---------------IDDNYFISGSIDGKVR  375 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V---------~~l~f~p---------------~d~~~l~sgs~Dg~v~  375 (667)
                      ++.|+.++.++.|.-.|..+|+.+..+.....+         ..+.+..               ..+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            457888888899999999999998887533221         1233321               1345788899999999


Q ss_pred             EEecCCCeEEEecccCCceE-------------EEEEee--CCCEEEEEec----------CCcEEEEEecCCcceeeeE
Q 005956          376 IWGVCEKRVVDWADVRDVIS-------------AICYIP--DGKGFIVGSI----------TGTCHFYKASGNDLKLEKV  430 (667)
Q Consensus       376 iwdl~~~~~~~~~~~~~~v~-------------~v~~sp--dg~~l~~gs~----------dg~i~l~d~~~~~~~~~~~  430 (667)
                      -.|..+++.+......+.+.             .+.-.|  .+..+++|+.          +|.|+-||++++++....-
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            99999998875333322221             111112  2346677653          6889999999998765422


Q ss_pred             eeccccC-----------cCCCCeEEEEEccCCCeEEEEEeC------------------CCcEEEEECCcceeeEEeC-
Q 005956          431 DFHDRKK-----------TSGNKITGIQFSRDESQRIMITSE------------------DSKLRILDGVDVIHKFKGL-  480 (667)
Q Consensus       431 ~~~~~~~-----------~~~~~I~~l~~sp~g~~~l~~~s~------------------dg~I~iwd~~~~~~~~~~~-  480 (667)
                      .......           .....-..+++.+.. ..++....                  .+.|.-.|..+...+...+ 
T Consensus       354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             cCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            1100000           000111234444442 23333221                  2234444544433333221 


Q ss_pred             -CCC-------CCeEEEEEcC-CCC---EEEEEeCCCcEEEEEcCCCCcccc
Q 005956          481 -PKS-------GSQMSASFTT-TGK---HIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       481 -~~~-------~~v~~v~~sp-dg~---~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                       .|.       ....-+.+.. +|+   .|+.++.+|.+++.|.++++....
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence             121       1112223333 563   789999999999999999986544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.71  E-value=5.2  Score=44.88  Aligned_cols=195  Identities=16%  Similarity=0.144  Sum_probs=111.1

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCCC--cEE---E-------EEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT---C-------VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  387 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~--~V~---~-------l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~  387 (667)
                      ++.++.++.++.|.-.|..+++.+..+....  .+.   +       +++   .+..++.++.|+.|.-+|..+++++-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            4677888888899999999999888875322  111   1       222   235677888899999999999998743


Q ss_pred             cccCCc--eEEEEEee--CCCEEEEEec------CCcEEEEEecCCcceeeeEeecccc---------------------
Q 005956          388 ADVRDV--ISAICYIP--DGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRK---------------------  436 (667)
Q Consensus       388 ~~~~~~--v~~v~~sp--dg~~l~~gs~------dg~i~l~d~~~~~~~~~~~~~~~~~---------------------  436 (667)
                      ......  -..+.-+|  .+..++++..      +|.|.-+|..+++............                     
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~  225 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG  225 (527)
T ss_pred             cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence            322110  00111112  1235555543      6899999999887765422211100                     


Q ss_pred             ---CcCCCCe-EEEEEccCCCeEEEEEeCC-----C-----------cEEEEECCccee--eEEeCCCC-------CCeE
Q 005956          437 ---KTSGNKI-TGIQFSRDESQRIMITSED-----S-----------KLRILDGVDVIH--KFKGLPKS-------GSQM  487 (667)
Q Consensus       437 ---~~~~~~I-~~l~~sp~g~~~l~~~s~d-----g-----------~I~iwd~~~~~~--~~~~~~~~-------~~v~  487 (667)
                         ......+ ..+.+.|.. .+++.+..+     +           .|.-.|+.+...  .|+...|.       ....
T Consensus       226 ~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       226 DAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence               0001111 234566543 344444322     2           344445554333  23332221       1222


Q ss_pred             EEEEcCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 005956          488 SASFTTTGK---HIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       488 ~v~~spdg~---~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      -+.+..+|+   .|+.+..+|.+++.|..+++..
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            233445776   7889999999999999998763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.67  E-value=0.25  Score=57.41  Aligned_cols=150  Identities=11%  Similarity=0.024  Sum_probs=92.3

Q ss_pred             ceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceee--eEeecccc--CcCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 005956          393 VISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLE--KVDFHDRK--KTSGNKITGIQFSRDESQRIMITSEDSKLR  466 (667)
Q Consensus       393 ~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~--~~~~~~~~--~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~  466 (667)
                      .+..+...+|+...++...  +-.|..||++.......  ...+..+.  ........++.|.|.=....++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            3555666677766655443  33788999986544321  11111111  112345567889887555677888899999


Q ss_pred             EEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc----cccCccceeEEccCCcEEEEe
Q 005956          467 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK----QKNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       467 iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~----~~~~~~~~~~fs~dg~~lav~  542 (667)
                      +..+...........-...+++++|+|.|+.++.|-..|++.-|...-.......    .....+.++.|-..-.++++-
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            9887644443333445678899999999999999999999999876543221111    112333445555555555553

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.63  E-value=0.6  Score=54.11  Aligned_cols=97  Identities=16%  Similarity=0.265  Sum_probs=70.6

Q ss_pred             eEEEEeCCCcEEEEecCCCeE--eEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe-cccCCc---eE
Q 005956          322 YLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVRDV---IS  395 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~--~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~-~~~~~~---v~  395 (667)
                      .++.|+..|.|...|+...-+  .+--....+|++++|+. ++..++.|-.+|.|.+||+..+++.+. ..+..+   +-
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            678888888898888876422  12223567999999999 999999999999999999999887753 333333   33


Q ss_pred             EEEEeeCCCEEEEEecCCcEEEEEec
Q 005956          396 AICYIPDGKGFIVGSITGTCHFYKAS  421 (667)
Q Consensus       396 ~v~~spdg~~l~~gs~dg~i~l~d~~  421 (667)
                      .+.+..++..++++...|.  +|.+.
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEEE
Confidence            4445556667888777776  56554

>PHA03098 kelch-like protein; Provisional

Probab=94.61  E-value=1.5  Score=49.41  Aligned_cols=102  Identities=14%  Similarity=0.191  Sum_probs=56.1

Q ss_pred             eEEEEeCCC------cEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeEEEe
Q 005956          322 YLLSCSMDK------TVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDW  387 (667)
Q Consensus       322 ~l~s~s~Dg------~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~~  387 (667)
                      .++.||.++      .+..||..+++....-.   .......+.+   ++.+++.|+.+     ..+..||..+++-...
T Consensus       297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            556666542      57788887776533222   1111222222   67788888865     3477888887765443


Q ss_pred             cccCCce-EEEEEeeCCCEEEEEecC------CcEEEEEecCCcce
Q 005956          388 ADVRDVI-SAICYIPDGKGFIVGSIT------GTCHFYKASGNDLK  426 (667)
Q Consensus       388 ~~~~~~v-~~v~~spdg~~l~~gs~d------g~i~l~d~~~~~~~  426 (667)
                      .....+. ...+..-+++.++.|+.+      ..+..||..++...
T Consensus       374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            2221111 111122466777777732      35788998876554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.58  E-value=2  Score=47.03  Aligned_cols=115  Identities=18%  Similarity=0.243  Sum_probs=75.6

Q ss_pred             ccccceEEEEecCCC-----eEEEEeCCCcEEEEecC-----CCeEeEEe--e--CCCc--EEEEEEeeCCCCEEEEEec
Q 005956          307 GHKGDVLDLAWSNSN-----YLLSCSMDKTVRMWQVG-----CNQCLNVF--D--HHNY--VTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-----~l~s~s~Dg~I~iWd~~-----~~~~~~~~--~--h~~~--V~~l~f~p~d~~~l~sgs~  370 (667)
                      |.-..|..+.|.|-+     .|++....+.|.||.+.     .++.+...  .  ..-+  -..+.|+| ....|+.-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence            344569999999842     68888888999999985     22322221  1  1222  34678999 6777766665


Q ss_pred             CCeEEEEecCC--CeEEEecccCCceEEEEEeeCCCEEEEEecC-CcEEEEEecC
Q 005956          371 DGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASG  422 (667)
Q Consensus       371 Dg~v~iwdl~~--~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g~i~l~d~~~  422 (667)
                      ...-.+++++.  .++..-....+.|.|.||.+||+.|+++-.. =.-++||-..
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            55555666654  3343344677889999999999998876543 2446777543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.49  E-value=7.4  Score=40.82  Aligned_cols=68  Identities=19%  Similarity=0.187  Sum_probs=39.2

Q ss_pred             CCeEEEEEccCC------CeEEEEEeCCCcEEEEECCcc---eeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956          441 NKITGIQFSRDE------SQRIMITSEDSKLRILDGVDV---IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVY  508 (667)
Q Consensus       441 ~~I~~l~~sp~g------~~~l~~~s~dg~I~iwd~~~~---~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~  508 (667)
                      ..++.+.|....      +.++++.-..+.|....+...   ....... .....+..+++.|||.+.++.+.+|.|+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            456677775431      245555555567777665421   1112212 2344789999999999988888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.43  E-value=0.13  Score=36.74  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=28.4

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT  252 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~  252 (667)
                      ...|.+++|+|...+||.|..||.|.|+.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3569999999999999999999999999984

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.29  E-value=0.15  Score=36.32  Aligned_cols=32  Identities=19%  Similarity=0.134  Sum_probs=28.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          482 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       482 ~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ....|..++|+|...+||.+..+|.|.||.++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34568999999999999999999999999994

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.23  E-value=6.7  Score=39.35  Aligned_cols=150  Identities=17%  Similarity=0.164  Sum_probs=85.9

Q ss_pred             ceEEEEecCCC-eEEEEe-CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe-cCCCe--EE
Q 005956          311 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG-VCEKR--VV  385 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd-l~~~~--~~  385 (667)
                      .+.+.++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ...+.  .+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            68889999999 454433 23333344333333333322334778889999 777777766666666663 33332  22


Q ss_pred             --EecccCCceEEEEEeeCCCEEEEEe---cCCcEEEEEecCCcce-eeeE-eeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          386 --DWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLK-LEKV-DFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       386 --~~~~~~~~v~~v~~spdg~~l~~gs---~dg~i~l~d~~~~~~~-~~~~-~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                        .+......|+++.++|||..+++..   .++.+.+--+....-. ...+ ............++.+.|.+++ .+++.
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~  182 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVL  182 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEE
Confidence              2222223899999999999988866   3467776655422211 1111 1111111224689999999986 55555


Q ss_pred             EeCC
Q 005956          459 TSED  462 (667)
Q Consensus       459 ~s~d  462 (667)
                      +...
T Consensus       183 ~~~~  186 (253)
T PF10647_consen  183 GRSA  186 (253)
T ss_pred             eCCC
Confidence            4433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.94  E-value=1.4  Score=48.19  Aligned_cols=153  Identities=13%  Similarity=0.239  Sum_probs=94.9

Q ss_pred             eeccccceEEEEecCCC-eEEEEe--CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC---CCCEEEEEecCCeEEEEe
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s--~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~---d~~~l~sgs~Dg~v~iwd  378 (667)
                      +..--.+|..++|.... .+++.-  .+|.+++=   ....+.   .-..|..+.|.|.   +.-.+++......|.+|.
T Consensus        15 L~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds~viG---qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   15 LHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFG---DSKVIG---QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             HHhhhccccceEecCCCEEEEEeeeeeCCccccC---CccEee---ccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            33334678999998655 555542  23333221   122333   3345889999983   222455666788999998


Q ss_pred             cCC-----CeEEE--eccc----CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          379 VCE-----KRVVD--WADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       379 l~~-----~~~~~--~~~~----~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      +.-     ++...  .-..    .--...+.|+|....|++-+....-.++++.......+ ..+..     .+.|.|.+
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk-aDi~~-----~G~IhCAC  162 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK-ADIKT-----SGLIHCAC  162 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE-EeccC-----CceEEEEE
Confidence            752     22221  1111    11234567999998888888776767777775554433 22333     37899999


Q ss_pred             EccCCCeEEEEEeCCCcEEEEE
Q 005956          448 FSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      |.+||.+++++.+..=.-+|||
T Consensus       163 WT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  163 WTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             ecCcCCEEEEEeCCeEEEEEec
Confidence            9999877777777766788997

>PRK10115 protease 2; Provisional

Probab=93.83  E-value=16  Score=42.38  Aligned_cols=195  Identities=9%  Similarity=0.072  Sum_probs=91.2

Q ss_pred             EEEEecCCC-eEE-EEeCC-----CcEEEEecCCC--eEeEEeeC-CCcEEEEEEeeCCCCEEEEEecC---CeEEEEec
Q 005956          313 LDLAWSNSN-YLL-SCSMD-----KTVRMWQVGCN--QCLNVFDH-HNYVTCVQFNPIDDNYFISGSID---GKVRIWGV  379 (667)
Q Consensus       313 ~~l~~s~~~-~l~-s~s~D-----g~I~iWd~~~~--~~~~~~~h-~~~V~~l~f~p~d~~~l~sgs~D---g~v~iwdl  379 (667)
                      ..++|.+|+ .|+ +.-.+     ..|..+++.++  +-...+.. .....-..+.+.++++++..+..   +.+.+++.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            458999887 444 43322     36888899888  44444542 22233223333367766655433   46888884


Q ss_pred             C--CCeEEEecccC-CceEEEEEeeCCCEEEEEecC--CcEEEEEecCCc-ceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          380 C--EKRVVDWADVR-DVISAICYIPDGKGFIVGSIT--GTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       380 ~--~~~~~~~~~~~-~~v~~v~~spdg~~l~~gs~d--g~i~l~d~~~~~-~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      .  .+......... +....+.  ..+..+.+-+..  ...+|+.+.-.. .....+....    ....|..+.+..+  
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~----~~~~i~~~~~~~~--  326 (686)
T PRK10115        255 ELADAEPFVFLPRRKDHEYSLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR----ENIMLEGFTLFTD--  326 (686)
T ss_pred             cCCCCCceEEEECCCCCEEEEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCC----CCCEEEEEEEECC--
Confidence            2  33322222222 2222222  223444444432  233344332111 1111111110    1246788888743  


Q ss_pred             eEEEEEeCCCcEEE--EECCc-ceeeEEeCCCCCCeEEEEEc--CCCC-EEEEEeC---CCcEEEEEcCCCC
Q 005956          454 QRIMITSEDSKLRI--LDGVD-VIHKFKGLPKSGSQMSASFT--TTGK-HIISIGD---DCRVYVWNYDELC  516 (667)
Q Consensus       454 ~~l~~~s~dg~I~i--wd~~~-~~~~~~~~~~~~~v~~v~~s--pdg~-~l~sgs~---Dg~I~iWd~~~~~  516 (667)
                      .++++...++.-++  +|... ....+.. .....+..+.++  +++. ++++.+.   -+.|+.+|..+++
T Consensus       327 ~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        327 WLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            57777777775554  45432 2222221 112223333344  3433 4444432   3688999988765

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.78  E-value=0.24  Score=57.17  Aligned_cols=69  Identities=23%  Similarity=0.420  Sum_probs=51.6

Q ss_pred             cccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEE---EEeeCCCCEEEEEecCCeEEEEec
Q 005956          308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCV---QFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l---~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      -.++|++++|+.+| .++.|-.+|.|.+||+..++.++.+. |..+.+.+   .+.. ++..++++...|.  +|.+
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence            35789999999999 88888899999999999999888875 44444433   3333 4556888777776  4543

>PHA02713 hypothetical protein; Provisional

Probab=93.63  E-value=4.9  Score=45.50  Aligned_cols=94  Identities=15%  Similarity=0.168  Sum_probs=52.6

Q ss_pred             cEEEEecCCCeEeEEeeCCCc--EEEEEEeeCCCCEEEEEecC------CeEEEEecCCCeEEEecccCCce-EEEEEee
Q 005956          331 TVRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVRDVI-SAICYIP  401 (667)
Q Consensus       331 ~I~iWd~~~~~~~~~~~h~~~--V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~~~~~~~~~~~~v-~~v~~sp  401 (667)
                      .+..||..+++....-....+  -.+++..  ++.+++.|+.+      ..+..||..+..-.......... ......-
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            567788877654332221111  1223332  67777888754      34788998887654433222111 1122234


Q ss_pred             CCCEEEEEecCC-----cEEEEEecCCcce
Q 005956          402 DGKGFIVGSITG-----TCHFYKASGNDLK  426 (667)
Q Consensus       402 dg~~l~~gs~dg-----~i~l~d~~~~~~~  426 (667)
                      +|+..++|+.++     .+..||..++...
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            678888888764     4788998876554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.50  E-value=1.8  Score=45.94  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=65.3

Q ss_pred             CCCcEEEEecCCCeEeEEeeCC---CcEEEEEEeeC-CCC-EEEEEecCCeEEEEec-CCCe-----EEEeccc------
Q 005956          328 MDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPI-DDN-YFISGSIDGKVRIWGV-CEKR-----VVDWADV------  390 (667)
Q Consensus       328 ~Dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~-d~~-~l~sgs~Dg~v~iwdl-~~~~-----~~~~~~~------  390 (667)
                      .-.++.+||+.+.+.++++...   ..+..+.|... +.. -|+.+...++|..|-- ..++     ++.+...      
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            3468999999999999999743   34667777651 122 2444445556655543 3332     3322111      


Q ss_pred             -----------CCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceee--eEeeccccC----------cCCCCeEEE
Q 005956          391 -----------RDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE--KVDFHDRKK----------TSGNKITGI  446 (667)
Q Consensus       391 -----------~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~--~~~~~~~~~----------~~~~~I~~l  446 (667)
                                 ..-|+.|.+|.|.++|.+.+ .+|.++.||+.....+..  ++.+-+...          .-.+...-+
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv  379 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV  379 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence                       34589999999999998876 689999999987554433  333322110          011223567


Q ss_pred             EEccCCCeEEEEEe
Q 005956          447 QFSRDESQRIMITS  460 (667)
Q Consensus       447 ~~sp~g~~~l~~~s  460 (667)
                      +.|-||.++.++.|
T Consensus       380 qlS~DGkRlYvTnS  393 (461)
T PF05694_consen  380 QLSLDGKRLYVTNS  393 (461)
T ss_dssp             EE-TTSSEEEEE--
T ss_pred             EEccCCeEEEEEee
Confidence            77888754444443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.39  E-value=2.2  Score=45.53  Aligned_cols=99  Identities=12%  Similarity=0.078  Sum_probs=57.5

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEecCCC-----eE--e-EEeeC-----CCcEEEEEEeeCCCCEEEEEecC-----
Q 005956          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----QC--L-NVFDH-----HNYVTCVQFNPIDDNYFISGSID-----  371 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~-----~~--~-~~~~h-----~~~V~~l~f~p~d~~~l~sgs~D-----  371 (667)
                      .....|++.+++ |+.+.....+++.|....     +.  + ..+..     ......++|.| ++.+.++-+..     
T Consensus        72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence            346778888888 444555543444455321     21  1 12221     34477899999 88776654421     


Q ss_pred             --------------CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe
Q 005956          372 --------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS  410 (667)
Q Consensus       372 --------------g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs  410 (667)
                                    +.|.-++..+++...+.........++|+|+|+.+++-.
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                          446666666655544333334467889999988876533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.36  E-value=0.95  Score=48.35  Aligned_cols=148  Identities=18%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             CCCEEE-EEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCC-------EEEEEecCCcEEEEEecCCcceeeeEee
Q 005956          361 DDNYFI-SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDF  432 (667)
Q Consensus       361 d~~~l~-sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~-------~l~~gs~dg~i~l~d~~~~~~~~~~~~~  432 (667)
                      +.++|+ .|+...+++-.|+..|+++.--..++.+ -+.|.|+.+       .-++|-.+..|.-.|.+-..........
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            444444 4555667888899999988643444444 677777542       2345555555655565533322111111


Q ss_pred             ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      ..  ........+..-..+|  ++++++..|.|++||--....+.....-+..|..+..+.+|++|++.+. ..+.+-|+
T Consensus       557 Kd--Y~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         557 KD--YKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             hh--ccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            11  0111333444444444  9999999999999994332222223335678899999999999988774 56777776


Q ss_pred             CC
Q 005956          513 DE  514 (667)
Q Consensus       513 ~~  514 (667)
                      .-
T Consensus       632 ~i  633 (776)
T COG5167         632 PI  633 (776)
T ss_pred             cc
Confidence            54

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.13  E-value=3.3  Score=46.71  Aligned_cols=113  Identities=13%  Similarity=0.213  Sum_probs=72.1

Q ss_pred             cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec--ccCCceEEEEEee--CCCEEEEEecCCcEEEEEec-----
Q 005956          351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIP--DGKGFIVGSITGTCHFYKAS-----  421 (667)
Q Consensus       351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~--~~~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~-----  421 (667)
                      .+.-+.-+. -++..++-+....+.|||.+.+......  ...+.|..+.|..  +|+.+++.+-...|.+|--.     
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            334444444 3445555555567999999998866433  4478899998864  88888888888899888542     


Q ss_pred             CCcc---eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956          422 GNDL---KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  470 (667)
Q Consensus       422 ~~~~---~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~  470 (667)
                      ....   ....+.+..   ....+|.+..|.++|  .+++++ ++.+.|+|-
T Consensus       110 ~~~p~w~~i~~i~i~~---~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISS---HTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeec---CCCCCccceeEecCC--eEEEEe-CCEEEEECC
Confidence            1111   112333322   123679999999997  444444 457888873

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.80  E-value=0.38  Score=46.24  Aligned_cols=58  Identities=17%  Similarity=0.199  Sum_probs=38.1

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEee-CC-CcEEEEEEeeCCCCEEEEE--ecCCeEEEEecC
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFD-HH-NYVTCVQFNPIDDNYFISG--SIDGKVRIWGVC  380 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~-~~V~~l~f~p~d~~~l~sg--s~Dg~v~iwdl~  380 (667)
                      +..+++.|+.|+.|++.-++.+.... |+ .++....... .+..+.++  |.|..++.|++.
T Consensus       116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence            78899999999999999888877765 44 3343333333 44455555  555555555554

>PHA02790 Kelch-like protein; Provisional

Probab=92.68  E-value=7  Score=43.36  Aligned_cols=103  Identities=8%  Similarity=0.078  Sum_probs=57.6

Q ss_pred             eEEEEeCCC-----cEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC--CeEEEEecCCCeEEEecccCC
Q 005956          322 YLLSCSMDK-----TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVDWADVRD  392 (667)
Q Consensus       322 ~l~s~s~Dg-----~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D--g~v~iwdl~~~~~~~~~~~~~  392 (667)
                      .++.||.++     ++..||..++.....-.  ....-.+++. - ++.+.+.|+.+  ..+..||..+++-........
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~  351 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK  351 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence            566676543     56778887765443322  1111112222 2 67777888764  358888887766544333322


Q ss_pred             ceE-EEEEeeCCCEEEEEecCC---cEEEEEecCCcce
Q 005956          393 VIS-AICYIPDGKGFIVGSITG---TCHFYKASGNDLK  426 (667)
Q Consensus       393 ~v~-~v~~spdg~~l~~gs~dg---~i~l~d~~~~~~~  426 (667)
                      ... .....-+|+..++|+.++   .+..||..++...
T Consensus       352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~  389 (480)
T PHA02790        352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ  389 (480)
T ss_pred             CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence            221 122234778888887654   4678888776554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.50  E-value=26  Score=40.98  Aligned_cols=186  Identities=12%  Similarity=0.078  Sum_probs=101.5

Q ss_pred             CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee
Q 005956          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  429 (667)
Q Consensus       350 ~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~  429 (667)
                      .....+..+-..++.|+=... ..||+++-. +....|....+ ++....+.+...+++++.++.+...++....+....
T Consensus       449 ~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~  525 (1096)
T KOG1897|consen  449 TDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPPGK-ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVS  525 (1096)
T ss_pred             ccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCCCc-eEEEEEeecceEEEEecCccEEEEEEeeccceeeee
Confidence            333444444434555444432 457777755 44444444433 344444455567888887777777777765532210


Q ss_pred             EeeccccCcCCCCeEEEEEccC--CCe---EEEEEeCCCcEEEEE-CCcce--eeE--EeCCCCCCeEEEEEcCCCCEEE
Q 005956          430 VDFHDRKKTSGNKITGIQFSRD--ESQ---RIMITSEDSKLRILD-GVDVI--HKF--KGLPKSGSQMSASFTTTGKHII  499 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~--g~~---~l~~~s~dg~I~iwd-~~~~~--~~~--~~~~~~~~v~~v~~spdg~~l~  499 (667)
                            .+.....|.|+.++|-  +.+   ++++|..+..+.+.- ..+..  ...  .+..-...|.-..|-.|..||.
T Consensus       526 ------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLl  599 (1096)
T KOG1897|consen  526 ------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLL  599 (1096)
T ss_pred             ------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEE
Confidence                  1222367899999875  334   788888777665543 22211  111  1111223455556666788999


Q ss_pred             EEeCCCcEEEEEcC--CCCccccc--c-ccCccceeEEccCCcEEEEecC
Q 005956          500 SIGDDCRVYVWNYD--ELCFPSSK--Q-KNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       500 sgs~Dg~I~iWd~~--~~~~~~~~--~-~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ++..||.+.-|.++  ++.....+  + ...+...-.|+..+..-.++-+
T Consensus       600 valgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s  649 (1096)
T KOG1897|consen  600 VALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS  649 (1096)
T ss_pred             EEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC
Confidence            99999988766554  44332222  1 1233444566666654444433

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.44  E-value=7  Score=37.67  Aligned_cols=145  Identities=10%  Similarity=0.084  Sum_probs=78.7

Q ss_pred             CEEEEEecCCeEEEEecCC--CeEEEecccCCceEEEEEeeCCCEEEEEecCC------cEEEE---EecCCcceeeeEe
Q 005956          363 NYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSITG------TCHFY---KASGNDLKLEKVD  431 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~--~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg------~i~l~---d~~~~~~~~~~~~  431 (667)
                      +.|+.+...++|.+|++.+  .++......-+.|..+.++..|+++++-=.+.      .+|+|   ...........+.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            4554446678899999983  34455555668899999999999999954322      45665   2211011111111


Q ss_pred             ecccc-----------------CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-----eEEeC-------CC
Q 005956          432 FHDRK-----------------KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKGL-------PK  482 (667)
Q Consensus       432 ~~~~~-----------------~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-----~~~~~-------~~  482 (667)
                      +-++.                 .....+..+++..|-.++ |++|+ ++.+.+|.+.....     .+-..       ..
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence            11210                 011245677777776434 44444 35788886542221     11111       11


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          483 SGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       483 ~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      .-.+..++|.  +.|||..+ +-.+++..+
T Consensus       187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             CceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence            2234555554  56888877 455676654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.42  E-value=4  Score=46.05  Aligned_cols=111  Identities=15%  Similarity=0.200  Sum_probs=72.2

Q ss_pred             eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE--ccCCCeEEEEEeCCCcEEEEECC
Q 005956          394 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF--SRDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       394 v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~--sp~g~~~l~~~s~dg~I~iwd~~  471 (667)
                      ++-+.-+.-++..++-.....+.|||.+...+..+. .+     ...+.|..+.|  .|+| +.+++.+..+.|.+|--.
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~-~f-----~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE-SF-----SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee-ee-----cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEcc
Confidence            444444455555555555668999999987755441 12     22478999988  4565 778888888899988521


Q ss_pred             -----------cceeeEEeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          472 -----------DVIHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       472 -----------~~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                                 ..+..+....++ .+|.+..|.++|.+++.+|  +.++|++-.
T Consensus       105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence                       123333333333 6788999999997776554  578888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.05  E-value=8.5  Score=44.00  Aligned_cols=109  Identities=12%  Similarity=0.160  Sum_probs=74.1

Q ss_pred             ceEEEEecC---CCeEEEEeCCCcEEEEecCC-------C-------------eEeEEeeCCCcEEEEEEe--eCCCCEE
Q 005956          311 DVLDLAWSN---SNYLLSCSMDKTVRMWQVGC-------N-------------QCLNVFDHHNYVTCVQFN--PIDDNYF  365 (667)
Q Consensus       311 ~V~~l~~s~---~~~l~s~s~Dg~I~iWd~~~-------~-------------~~~~~~~h~~~V~~l~f~--p~d~~~l  365 (667)
                      .|+.|....   ...|+.|..||.|.+|.+++       .             ++.-.+.....+++++++  . ..++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence            455554433   22899999999999996521       1             112233456689999998  6 67788


Q ss_pred             EEEecCCeEEEEecCC--CeEEE--ecccCCceEEEEEeeCC---C---EEEEEecCCcEEEEEe
Q 005956          366 ISGSIDGKVRIWGVCE--KRVVD--WADVRDVISAICYIPDG---K---GFIVGSITGTCHFYKA  420 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~--~~~~~--~~~~~~~v~~v~~spdg---~---~l~~gs~dg~i~l~d~  420 (667)
                      |+++....|.||-...  .+...  ...+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888888775443  22211  22356678999998743   2   7778889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.03  E-value=11  Score=40.62  Aligned_cols=148  Identities=14%  Similarity=0.103  Sum_probs=91.8

Q ss_pred             CCCEEEEEecCCeEEEEecCCCe-----EEEecccCCceEEEEEee-----CCCEEEEEecCCcEEEEEecCCcc-----
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISAICYIP-----DGKGFIVGSITGTCHFYKASGNDL-----  425 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~-----~~~~~~~~~~v~~v~~sp-----dg~~l~~gs~dg~i~l~d~~~~~~-----  425 (667)
                      +...|++|+..|.++||+...+.     ++--.....+|..+..-+     +...||+ -.-..+.+|.+....-     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            45789999999999999986543     233345567777776543     2234444 5667888888843221     


Q ss_pred             ---eeeeEeeccccCcCCCCeEEEEEccC----CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEE
Q 005956          426 ---KLEKVDFHDRKKTSGNKITGIQFSRD----ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI  498 (667)
Q Consensus       426 ---~~~~~~~~~~~~~~~~~I~~l~~sp~----g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l  498 (667)
                         ....+.-+. .   ......++.-|-    |..+|.+-+.||.+.+|+........... ..--...++|.+.-..+
T Consensus       115 ~~~~L~~~yeh~-l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llPgPl~Y~~~tDsf  189 (418)
T PF14727_consen  115 NQYQLELIYEHS-L---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLPGPLCYCPRTDSF  189 (418)
T ss_pred             cEEEEEEEEEEe-c---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCCcCeEEeecCCEE
Confidence               111111111 1   122333443332    24689999999999999977655333322 22233456777888889


Q ss_pred             EEEeCCCcEEEEEcCC
Q 005956          499 ISIGDDCRVYVWNYDE  514 (667)
Q Consensus       499 ~sgs~Dg~I~iWd~~~  514 (667)
                      ++++.+..|.-|.+..
T Consensus       190 vt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  190 VTASSSWTLECYKYQD  205 (418)
T ss_pred             EEecCceeEEEecHHH
Confidence            9999888999998743

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.96  E-value=10  Score=36.87  Aligned_cols=204  Identities=11%  Similarity=0.013  Sum_probs=106.3

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCC--CEEEEEecCCeEEEEecCCC--eEEEe------cccC
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD--NYFISGSIDGKVRIWGVCEK--RVVDW------ADVR  391 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~--~~l~sgs~Dg~v~iwdl~~~--~~~~~------~~~~  391 (667)
                      ++..--..+.|.-||+.+++..+.--...++..+.+--.++  .+.+.++..-.|.-||....  .+...      ...+
T Consensus        29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kk  108 (310)
T KOG4499|consen   29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKK  108 (310)
T ss_pred             EEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHh
Confidence            34444445667779988766554432222233333322121  23333333333444663222  22111      1123


Q ss_pred             CceEEEEEeeCCCEEEEEec----------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          392 DVISAICYIPDGKGFIVGSI----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       392 ~~v~~v~~spdg~~l~~gs~----------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      ...+.-..+|+|+++ .|+.          .|.++.|-....-....         ..-.--+.++|..+...+.++-+.
T Consensus       109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~---------~~v~IsNgl~Wd~d~K~fY~iDsl  178 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELIW---------NCVGISNGLAWDSDAKKFYYIDSL  178 (310)
T ss_pred             cccccCccCCCCcee-eeeeccccccccccccEEEEeccCCCceeee---------hhccCCccccccccCcEEEEEccC
Confidence            446666788999984 4442          23444444332111110         001233578898876667777788


Q ss_pred             CCcEEEEECC-------cceeeEEeCC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccce
Q 005956          462 DSKLRILDGV-------DVIHKFKGLP----KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSC  529 (667)
Q Consensus       462 dg~I~iwd~~-------~~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~  529 (667)
                      +-+|.-||..       +....+....    .....-.+++..+|.+.++.-..++|...|..+++...... ....+++
T Consensus       179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits  258 (310)
T KOG4499|consen  179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS  258 (310)
T ss_pred             ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence            8888888722       2222222211    11122345666788888888888999999999998755432 2344556


Q ss_pred             eEEccC
Q 005956          530 EHFFSE  535 (667)
Q Consensus       530 ~~fs~d  535 (667)
                      ++|--.
T Consensus       259 ccFgGk  264 (310)
T KOG4499|consen  259 CCFGGK  264 (310)
T ss_pred             EEecCC
Confidence            677643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.75  E-value=7.6  Score=38.83  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=70.3

Q ss_pred             CeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe-EEEEecCCCeEEE-e--cccCCceEEEEEeeCCCEEEEEec----
Q 005956          340 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-VRIWGVCEKRVVD-W--ADVRDVISAICYIPDGKGFIVGSI----  411 (667)
Q Consensus       340 ~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~-v~iwdl~~~~~~~-~--~~~~~~v~~v~~spdg~~l~~gs~----  411 (667)
                      ++++........-..|+|+|....-++.+-.-|+ ..++|..+.+... .  ...+.-.-.=+|+|||.+|...-.    
T Consensus        58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~  137 (366)
T COG3490          58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP  137 (366)
T ss_pred             CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence            4555555555666678888866777777766666 5688888765332 1  111222333479999999887543    


Q ss_pred             -CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          412 -TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       412 -dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                       -|.|-+||.+..-...-.+.      +++-.-..+.+.+|| ..+++.
T Consensus       138 ~rGViGvYd~r~~fqrvgE~~------t~GiGpHev~lm~DG-rtlvva  179 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEFS------THGIGPHEVTLMADG-RTLVVA  179 (366)
T ss_pred             CCceEEEEecccccceecccc------cCCcCcceeEEecCC-cEEEEe
Confidence             37899999984332222333      333455678899997 444443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.61  E-value=22  Score=38.26  Aligned_cols=87  Identities=16%  Similarity=0.194  Sum_probs=53.5

Q ss_pred             EEecCCC-eEEEEeCCCcEEE---EecC-----CCeEeEEe----eCC--CcEEEEEEeeC----------CCCEEEEEe
Q 005956          315 LAWSNSN-YLLSCSMDKTVRM---WQVG-----CNQCLNVF----DHH--NYVTCVQFNPI----------DDNYFISGS  369 (667)
Q Consensus       315 l~~s~~~-~l~s~s~Dg~I~i---Wd~~-----~~~~~~~~----~h~--~~V~~l~f~p~----------d~~~l~sgs  369 (667)
                      ++.+|++ .|+.+..++.+.+   |+..     .+......    .+.  ..|+++.+-|.          |...++.|.
T Consensus         7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~   86 (415)
T PF14655_consen    7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT   86 (415)
T ss_pred             EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence            4566777 6666666665554   5431     11222221    122  57888877763          457899999


Q ss_pred             cCCeEEEEecCCCeEEEecccCCceEEEEEee
Q 005956          370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIP  401 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp  401 (667)
                      .+|.|++|......+....-|..+|..+.+..
T Consensus        87 ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   87 SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             cccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence            99999999875544444445666777666543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.09  E-value=8.8  Score=40.88  Aligned_cols=148  Identities=10%  Similarity=0.111  Sum_probs=75.3

Q ss_pred             CcEEEEEEeeCCCCEEEEEe-----------cCC-eEEEEecCC--CeE---EEecccCCceEEEEEeeCCCEEEEEecC
Q 005956          350 NYVTCVQFNPIDDNYFISGS-----------IDG-KVRIWGVCE--KRV---VDWADVRDVISAICYIPDGKGFIVGSIT  412 (667)
Q Consensus       350 ~~V~~l~f~p~d~~~l~sgs-----------~Dg-~v~iwdl~~--~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~d  412 (667)
                      .....|+|.+ +++++++-.           ..+ .|.+++-..  ++.   ..+...-.....+++.++|  |+++...
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            3556788888 777776642           123 677775432  222   2233333456889999988  4444444


Q ss_pred             CcEEEEEecCCcce---ee-eEe-eccccCcCCCCeEEEEEccCCCeEEEEEeCC-------------------CcEEEE
Q 005956          413 GTCHFYKASGNDLK---LE-KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSED-------------------SKLRIL  468 (667)
Q Consensus       413 g~i~l~d~~~~~~~---~~-~~~-~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-------------------g~I~iw  468 (667)
                      ...++.|.......   .+ .+. +......+......++|.||| .+.++.+..                   +.|.-+
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            33334354332111   11 111 111001123457789999997 444433311                   334445


Q ss_pred             ECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956          469 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       469 d~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs  502 (667)
                      |........... .......++|+++|+++++-.
T Consensus       170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence            543222222222 234456889999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.07  E-value=0.14  Score=57.86  Aligned_cols=116  Identities=17%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             eeeccccceEEEEecCCC--eEEEEeCCCcEEEEecC--CCeEeEEe-----e-CCCcEEEEEEeeC--CCCEEEEEecC
Q 005956          304 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG--CNQCLNVF-----D-HHNYVTCVQFNPI--DDNYFISGSID  371 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~--~~~~~~~~-----~-h~~~V~~l~f~p~--d~~~l~sgs~D  371 (667)
                      .++|..+.|..|.|-...  .++  -.-|.+.||+++  .|+....+     . ...++.-+.|.|.  +.-++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            345778888888885433  222  233678899875  34332221     1 2334444555441  55677788888


Q ss_pred             CeEEEEecCCCeEEEecccCCceE-----------EEEEeeCCCEEEEEecCCcEEEEEec
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVIS-----------AICYIPDGKGFIVGSITGTCHFYKAS  421 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~-----------~v~~spdg~~l~~gs~dg~i~l~d~~  421 (667)
                      +.+++..+.....--+..|...+.           --.++|||+.++.++.||.+++|.+.
T Consensus       205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            999888776533211222322222           22379999999999999999999875

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.73  E-value=6.1  Score=44.58  Aligned_cols=225  Identities=12%  Similarity=0.119  Sum_probs=109.2

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe--
Q 005956          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--  387 (667)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~--  387 (667)
                      ..-++..+|....-..+.--.|+|+++. |+.+.... ....+..+.|+.  ...|++...+|++++|++........  
T Consensus        45 GpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~sv  121 (829)
T KOG2280|consen   45 GPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNSV  121 (829)
T ss_pred             CceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhccccc
Confidence            3445555554411111333468888876 55554442 333788999985  66777788999999999876544331  


Q ss_pred             --cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe--EEEEEe-CC
Q 005956          388 --ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ--RIMITS-ED  462 (667)
Q Consensus       388 --~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~--~l~~~s-~d  462 (667)
                        ......|..+.+..+  .+++-+.+|.+.+-.-.......+   +...... ..+-++-...+++..  .++-.. ..
T Consensus       122 g~e~~~~~I~ec~~f~~--GVavlt~~g~v~~i~~~~~~~~~~---~~diP~~-~~~~~~Wt~~~~~~~~~~ll~v~~~v  195 (829)
T KOG2280|consen  122 GFESQMSDIVECRFFHN--GVAVLTVSGQVILINGVEEPKLRK---MPDIPYN-ELPKSCWTVFQPHRQSTILLDVDVAV  195 (829)
T ss_pred             ccccccCceeEEEEecC--ceEEEecCCcEEEEcCCCcchhhh---CCCCCCc-cCCCcceeEecCCCcceeEEeechhh
Confidence              111222333333333  455555666655443221111111   1110000 011122222222111  111111 00


Q ss_pred             CcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc--ccCccceeEEccCCcEE
Q 005956          463 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--KNSVRSCEHFFSEGVSV  539 (667)
Q Consensus       463 g~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~fs~dg~~l  539 (667)
                      + ..++.... ..+........+.+..+++||+.++|+-=.++|.|.+-+.+..+......  .........|..+. .+
T Consensus       196 ~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd-aV  273 (829)
T KOG2280|consen  196 G-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND-AV  273 (829)
T ss_pred             h-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC-ce
Confidence            0 01111111 11111111124678889999999999999999999998887655433322  22233345666544 45


Q ss_pred             EEecCCC
Q 005956          540 AVQWPGI  546 (667)
Q Consensus       540 av~w~~~  546 (667)
                      ++.|...
T Consensus       274 vl~~e~~  280 (829)
T KOG2280|consen  274 VLSWEVN  280 (829)
T ss_pred             EEEEeee
Confidence            5556543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.53  E-value=9.1  Score=33.91  Aligned_cols=105  Identities=12%  Similarity=0.181  Sum_probs=70.2

Q ss_pred             EecCCC-eEEEEeCCCcEEEEecCC--------CeEeEEeeCCCcEEEEEEeeC----CCCEEEEEecCCeEEEEecCCC
Q 005956          316 AWSNSN-YLLSCSMDKTVRMWQVGC--------NQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       316 ~~s~~~-~l~s~s~Dg~I~iWd~~~--------~~~~~~~~h~~~V~~l~f~p~----d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      .|.... .|+.++.-+.|.|++...        ...+..+.....|++++-.+.    +...|+.|+ ...+..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence            344444 677888888999998753        335666777888888876552    245666665 567999999998


Q ss_pred             eEEEecccCCceEEEEEee----CCCEEEEEecCCcEEEEEecC
Q 005956          383 RVVDWADVRDVISAICYIP----DGKGFIVGSITGTCHFYKASG  422 (667)
Q Consensus       383 ~~~~~~~~~~~v~~v~~sp----dg~~l~~gs~dg~i~l~d~~~  422 (667)
                      .-+.+....+.++++.+-.    +...+++|+ +-.|.-||...
T Consensus        84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G  126 (136)
T PF14781_consen   84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG  126 (136)
T ss_pred             chhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence            8887777888888888754    223444443 33444444443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.49  E-value=0.76  Score=31.86  Aligned_cols=31  Identities=35%  Similarity=0.473  Sum_probs=26.5

Q ss_pred             ccEEEEEEcCCC---CEEEEEECCCcEEEEEcCC
Q 005956          223 GCIWTLKFSPDG---RYLASGGEDGVVRIWHVTS  253 (667)
Q Consensus       223 ~~I~~v~fspdg---~~Latgs~Dg~I~vWdv~~  253 (667)
                      |+|.+|+|||+.   .+||.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            579999999854   4888888889999999984

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.45  E-value=2.8  Score=44.92  Aligned_cols=137  Identities=18%  Similarity=0.204  Sum_probs=82.6

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC-------CCCEEEEEecCCeEEEEecCC-CeEEEecccCC-
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-------DDNYFISGSIDGKVRIWGVCE-KRVVDWADVRD-  392 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~-------d~~~l~sgs~Dg~v~iwdl~~-~~~~~~~~~~~-  392 (667)
                      .+..++.-..++-.|++.|+.+........| -++|.|.       +.+.|+--+ +..|.-.|.+- +..+.....+. 
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeehhc
Confidence            4556777778888899999999998866666 6788872       233444444 45555556543 32222222222 


Q ss_pred             ----ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          393 ----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       393 ----~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                          ...+..-.. ..++|+|+..|.|++||.-+..... .      ...-+..|..+..+.+| .++++++. ..+.+-
T Consensus       560 ~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKt-a------lP~lG~aIk~idvta~G-k~ilaTCk-~yllL~  629 (776)
T COG5167         560 KTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKT-A------LPGLGDAIKHIDVTANG-KHILATCK-NYLLLT  629 (776)
T ss_pred             ccccccccccccc-CceEEEecCCCceeeehhhcchhhh-c------CcccccceeeeEeecCC-cEEEEeec-ceEEEE
Confidence                233333223 3489999999999999975433221 1      22234678899999987 55555443 355565


Q ss_pred             EC
Q 005956          469 DG  470 (667)
Q Consensus       469 d~  470 (667)
                      |+
T Consensus       630 d~  631 (776)
T COG5167         630 DV  631 (776)
T ss_pred             ec
Confidence            53

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.00  E-value=44  Score=38.91  Aligned_cols=70  Identities=11%  Similarity=0.185  Sum_probs=43.5

Q ss_pred             cceEEEEecCCC-eEEEEeCCCcEEEEecCC----------CeE--e-EEe---------eCCCcEEEEEEeeC--CCCE
Q 005956          310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----------NQC--L-NVF---------DHHNYVTCVQFNPI--DDNY  364 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~----------~~~--~-~~~---------~h~~~V~~l~f~p~--d~~~  364 (667)
                      -.|..|..+++| +|+..|..+ |.|-.+..          ++.  . +++         .+...|..+.|+|.  ++..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            468899999999 666666654 44444421          111  1 111         13346778888873  2567


Q ss_pred             EEEEecCCeEEEEecC
Q 005956          365 FISGSIDGKVRIWGVC  380 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~  380 (667)
                      |+.-..|+++|+||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            7777778888888873

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.68  E-value=7  Score=45.29  Aligned_cols=82  Identities=16%  Similarity=0.224  Sum_probs=54.4

Q ss_pred             CCceEEEEEeeCCCEEEEEecCCcEEEEEecC---------Cc--ceeeeEeeccc--cCcCCCCeEEEEEccCC--CeE
Q 005956          391 RDVISAICYIPDGKGFIVGSITGTCHFYKASG---------ND--LKLEKVDFHDR--KKTSGNKITGIQFSRDE--SQR  455 (667)
Q Consensus       391 ~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~---------~~--~~~~~~~~~~~--~~~~~~~I~~l~~sp~g--~~~  455 (667)
                      .-.|..+.++|+|++++..+..|.+.+.=.+.         ++  .....+.+...  .......|..+.|+|.+  ..+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            34588999999999999988876554433221         11  11112222111  12234678999999974  478


Q ss_pred             EEEEeCCCcEEEEECCc
Q 005956          456 IMITSEDSKLRILDGVD  472 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~  472 (667)
                      |++-..|+++|+||+.+
T Consensus       164 l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEEecCCEEEEEecCC
Confidence            99999999999999763

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.47  E-value=27  Score=35.74  Aligned_cols=166  Identities=11%  Similarity=0.136  Sum_probs=93.4

Q ss_pred             cEEEEecCCCeEeEEee-------CCCcEEEEEEeeCCC----CEEEEE-ecCCeEEEEecCCCeEEEeccc--------
Q 005956          331 TVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDD----NYFISG-SIDGKVRIWGVCEKRVVDWADV--------  390 (667)
Q Consensus       331 ~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~d~----~~l~sg-s~Dg~v~iwdl~~~~~~~~~~~--------  390 (667)
                      .|.+||+.+++.++.+.       ....+..+.+...++    .+++.+ +..+-|.++|+.+++..+...+        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            68899999999988874       345778888876332    233333 3345799999999876543322        


Q ss_pred             ------------CCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcceee----------eEeeccccCcCCCCeEE
Q 005956          391 ------------RDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLE----------KVDFHDRKKTSGNKITG  445 (667)
Q Consensus       391 ------------~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~~~----------~~~~~~~~~~~~~~I~~  445 (667)
                                  .+.+..++.+|   +|++|......+. ++|.+.+..+...          .+...+.   .......
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g  190 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG  190 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence                        12245555554   5556665544332 3444432211110          1111111   1145677


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCc-----ceeeE-EeCCCCCCeEEEEEcC--CCCEEEEE
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVD-----VIHKF-KGLPKSGSQMSASFTT--TGKHIISI  501 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~-----~~~~~-~~~~~~~~v~~v~~sp--dg~~l~sg  501 (667)
                      +++.++| .++++--..+.|..|+...     ....+ +....-..+..+.+.+  +|.+.+..
T Consensus       191 ~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  191 MAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            8888875 7777888889999999775     22233 3322256778888887  66554443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.26  E-value=25  Score=36.59  Aligned_cols=104  Identities=9%  Similarity=0.148  Sum_probs=56.4

Q ss_pred             CeEEEEeCC-----CcEEEEecCCCeE---eEEee---CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeE
Q 005956          321 NYLLSCSMD-----KTVRMWQVGCNQC---LNVFD---HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRV  384 (667)
Q Consensus       321 ~~l~s~s~D-----g~I~iWd~~~~~~---~~~~~---h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~  384 (667)
                      ..++.|+.+     ..+..+|+.+.+.   .....   ....-.+++..  ++++++.|+..     ..+..||+.+.+-
T Consensus        74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            355666654     3566677766553   12221   11111222222  56777777642     4588899888765


Q ss_pred             EEecccC--CceEEEEEeeCCCEEEEEecCC----cEEEEEecCCcce
Q 005956          385 VDWADVR--DVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLK  426 (667)
Q Consensus       385 ~~~~~~~--~~v~~v~~spdg~~l~~gs~dg----~i~l~d~~~~~~~  426 (667)
                      .......  ......+...+++.++.|+.++    .+..||..++...
T Consensus       152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            4433211  1222333345677888887664    3568888876653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.99  E-value=30  Score=35.62  Aligned_cols=215  Identities=9%  Similarity=0.018  Sum_probs=99.1

Q ss_pred             eEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE--E
Q 005956          312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--V  385 (667)
Q Consensus       312 V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~--~  385 (667)
                      ..++.|..+..+++| ..+ +.+.-.+.++.-..+.    .......+.... ++ ....++..|.|+.= .+.++.  .
T Consensus        64 l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T-~DgG~tW~~  138 (302)
T PF14870_consen   64 LNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRT-TDGGKTWQA  138 (302)
T ss_dssp             EEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEE-SSTTSSEEE
T ss_pred             EEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEe-CCCCCCeeE
Confidence            566777654444443 344 3444444444333332    223334444444 33 33334455554332 223331  1


Q ss_pred             EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 005956          386 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  465 (667)
Q Consensus       386 ~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I  465 (667)
                      ........+..+..++||++++++.......-||--.......       ......+|..+.|.|++ .+.+ ....|.|
T Consensus       139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-------~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~  209 (302)
T PF14870_consen  139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-------NRNSSRRIQSMGFSPDG-NLWM-LARGGQI  209 (302)
T ss_dssp             EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-------E--SSS-EEEEEE-TTS--EEE-EETTTEE
T ss_pred             cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-------ccCccceehhceecCCC-CEEE-EeCCcEE
Confidence            1334456788888899999888886655555666543222211       22234789999999996 4434 4488999


Q ss_pred             EEEECCcceeeEEe-----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc----cccCccceeEEccCC
Q 005956          466 RILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK----QKNSVRSCEHFFSEG  536 (667)
Q Consensus       466 ~iwd~~~~~~~~~~-----~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~----~~~~~~~~~~fs~dg  536 (667)
                      +.=+.......+..     ....-.+..++|.+++...|+|+ .|.+ +...+.++.=...    ........+.|.++.
T Consensus       210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~  287 (302)
T PF14870_consen  210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD  287 (302)
T ss_dssp             EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred             EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC
Confidence            98873322222221     12334589999999888777766 4533 3455555531111    222233345666666


Q ss_pred             cEEEEe
Q 005956          537 VSVAVQ  542 (667)
Q Consensus       537 ~~lav~  542 (667)
                      +-+++.
T Consensus       288 ~gf~lG  293 (302)
T PF14870_consen  288 KGFVLG  293 (302)
T ss_dssp             EEEEE-
T ss_pred             ceEEEC
Confidence            666654

>PHA03098 kelch-like protein; Provisional

Probab=88.88  E-value=16  Score=41.07  Aligned_cols=147  Identities=12%  Similarity=0.037  Sum_probs=71.5

Q ss_pred             CCCEEEEEecCC------eEEEEecCCCeEEEecccCCc-eEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceee
Q 005956          361 DDNYFISGSIDG------KVRIWGVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLE  428 (667)
Q Consensus       361 d~~~l~sgs~Dg------~v~iwdl~~~~~~~~~~~~~~-v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~  428 (667)
                      ++.+++.|+.++      .+..||..+.+.........+ .......-+++.++.|+.+     ..+..||..++.....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            556666666542      577888888776543322211 1111222367788888865     3467788877655322


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC------CcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEE
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d------g~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      . .+..    ..... +++.. + +.+++.|+.+      ..+..||..+..-.... .+......++ ...+++..+.|
T Consensus       374 ~-~lp~----~r~~~-~~~~~-~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~G  444 (534)
T PHA03098        374 P-PLIF----PRYNP-CVVNV-N-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIG  444 (534)
T ss_pred             C-CcCc----CCccc-eEEEE-C-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEEC
Confidence            0 0110    01111 12222 3 3566666632      35788886532111111 0011111122 22356666666


Q ss_pred             eCC--------CcEEEEEcCCCC
Q 005956          502 GDD--------CRVYVWNYDELC  516 (667)
Q Consensus       502 s~D--------g~I~iWd~~~~~  516 (667)
                      |.+        ..+.+||..+.+
T Consensus       445 G~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        445 GISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CccCCCCCcccceEEEecCCCCc
Confidence            643        237888877653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.46  E-value=2  Score=42.03  Aligned_cols=70  Identities=11%  Similarity=0.086  Sum_probs=46.4

Q ss_pred             EeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956          399 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDG  470 (667)
Q Consensus       399 ~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~-------~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~  470 (667)
                      +..+++++++.+.+|.+++||+.+.+.....+.+..-..       .....|+.+.++.+| .-|++ -.+|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~-lsng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVT-LSNGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEE-EeCCCEEEecc
Confidence            456789999999999999999998876654322221111       344667888888776 33333 33467777774

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN02153 epithiospecifier protein

Probab=88.27  E-value=36  Score=35.68  Aligned_cols=102  Identities=9%  Similarity=0.056  Sum_probs=54.4

Q ss_pred             eEEEEeCC-------CcEEEEecCCCeEeEEeeC--CC-----cEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCC
Q 005956          322 YLLSCSMD-------KTVRMWQVGCNQCLNVFDH--HN-----YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEK  382 (667)
Q Consensus       322 ~l~s~s~D-------g~I~iWd~~~~~~~~~~~h--~~-----~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~  382 (667)
                      .++.|+.+       ..+.+||+.+.+-...-..  ..     ....+.+   ++++++.|+.+     ..+.+||+.+.
T Consensus        35 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         35 LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEECCCC
Confidence            55556543       3577888877654322211  11     1222233   56777777754     35788998876


Q ss_pred             eEEEeccc------CCceEEEEEeeCCCEEEEEecC-----------CcEEEEEecCCcce
Q 005956          383 RVVDWADV------RDVISAICYIPDGKGFIVGSIT-----------GTCHFYKASGNDLK  426 (667)
Q Consensus       383 ~~~~~~~~------~~~v~~v~~spdg~~l~~gs~d-----------g~i~l~d~~~~~~~  426 (667)
                      +-......      .......+..-+++.++.|+.+           ..+.+||..+....
T Consensus       112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~  172 (341)
T PLN02153        112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV  172 (341)
T ss_pred             EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence            64432211      1111222223456777777754           24678888776553

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.12  E-value=36  Score=40.25  Aligned_cols=172  Identities=14%  Similarity=0.226  Sum_probs=101.2

Q ss_pred             cEEEEecCCCeEeEEeeCCC-----cEEEEEEeeCCCC-EEEEEe-----------cCCeEEEEecC-CCe---EEEecc
Q 005956          331 TVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDN-YFISGS-----------IDGKVRIWGVC-EKR---VVDWAD  389 (667)
Q Consensus       331 ~I~iWd~~~~~~~~~~~h~~-----~V~~l~f~p~d~~-~l~sgs-----------~Dg~v~iwdl~-~~~---~~~~~~  389 (667)
                      .|++.|..+++.+..+.+..     .|..+.|+..+.. ++++|.           .+|.++.|++- .++   ......
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            37788888777776665333     4666677763333 333332           23446677653 333   333444


Q ss_pred             cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       390 ~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                      ..+.|.++|  |...++++| ....+++||+...++... ....      ....|+.+++..   ..+++|...-.+.++
T Consensus       934 ~~~~v~Ai~--~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~------~p~~Is~iqt~~---~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen  934 IPGPVGAIC--PFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKF------IPNRISSIQTYG---ARIVVGDIQESVHFV 1001 (1205)
T ss_pred             CCccceEEe--ccCCEEEEe-cccEEEEeeCChHHHHhhhhhcc------CceEEEEEeecc---eEEEEeeccceEEEE
Confidence            556666665  655555554 456999999987666543 1111      236788888865   467777666555554


Q ss_pred             --ECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          469 --DGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       469 --d~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                        +-. +....+....-...|+++.+ -|...+|.+..=|.+.+-.+...
T Consensus      1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred             EEecCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCCc
Confidence              432 34455555444555666655 45567777777777777766543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.08  E-value=15  Score=38.40  Aligned_cols=110  Identities=18%  Similarity=0.282  Sum_probs=56.3

Q ss_pred             ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC---CCeEEEEEeCC------C
Q 005956          393 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSED------S  463 (667)
Q Consensus       393 ~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~---g~~~l~~~s~d------g  463 (667)
                      ...+|+|.|||+.++ +...|.|++++ ..+......................++++|+   +..+.++.+..      .
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            467899999986655 56699999999 3333311111121112223466899999994   22333333321      1


Q ss_pred             --cEEEEECCc-------ceeeEEeC----CCCCCeEEEEEcCCCCEEEEEeCC
Q 005956          464 --KLRILDGVD-------VIHKFKGL----PKSGSQMSASFTTTGKHIISIGDD  504 (667)
Q Consensus       464 --~I~iwd~~~-------~~~~~~~~----~~~~~v~~v~~spdg~~l~sgs~D  504 (667)
                        .|.-|....       ....+...    ........+.|.|||.+.++.+..
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence              233232211       11122221    134455679999999777776643

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.96  E-value=21  Score=38.71  Aligned_cols=87  Identities=10%  Similarity=0.151  Sum_probs=56.0

Q ss_pred             ceEEEEEeeCCCEEEEEecCCcEEEEEe---------cCCcceee--eEeeccccCc--CCCCeEEEEEccCC--CeEEE
Q 005956          393 VISAICYIPDGKGFIVGSITGTCHFYKA---------SGNDLKLE--KVDFHDRKKT--SGNKITGIQFSRDE--SQRIM  457 (667)
Q Consensus       393 ~v~~v~~spdg~~l~~gs~dg~i~l~d~---------~~~~~~~~--~~~~~~~~~~--~~~~I~~l~~sp~g--~~~l~  457 (667)
                      .|..+..++.|..++..+.+|.+.++=.         .+++....  .+.+......  ..-.+..++|+|+.  ...|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4778888999999999999998776642         22222111  1111111111  11235567899974  46888


Q ss_pred             EEeCCCcEEEEECCcceeeEEe
Q 005956          458 ITSEDSKLRILDGVDVIHKFKG  479 (667)
Q Consensus       458 ~~s~dg~I~iwd~~~~~~~~~~  479 (667)
                      .-+.|+.||+||.......+..
T Consensus       185 iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             EEecCcEEEEEecCCcchhhcc
Confidence            8899999999998876655543

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=87.42  E-value=38  Score=34.95  Aligned_cols=204  Identities=10%  Similarity=0.016  Sum_probs=94.6

Q ss_pred             cccceEEEEecCCC-e-EEEEeCCCcEEEEecCCCeE----------------eEEeeCCCcEEEEEEeeCCCCEEEEEe
Q 005956          308 HKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQC----------------LNVFDHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~-l~s~s~Dg~I~iWd~~~~~~----------------~~~~~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                      +...|+++...+.. . ++-++....++++++..-..                ...+.+................++++.
T Consensus        41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A  120 (302)
T smart00036       41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA  120 (302)
T ss_pred             CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence            45678888888765 3 33444445599999832221                123334443333333321223445555


Q ss_pred             cCCeEEEEecCCC--eEEEec-------ccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceee--eEeecccc
Q 005956          370 IDGKVRIWGVCEK--RVVDWA-------DVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE--KVDFHDRK  436 (667)
Q Consensus       370 ~Dg~v~iwdl~~~--~~~~~~-------~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~--~~~~~~~~  436 (667)
                      ...+|.++.....  +.....       .....+..+..+++  ...+.+|+..+-..++++........  ...+... 
T Consensus       121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~-  199 (302)
T smart00036      121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSE-  199 (302)
T ss_pred             cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccc-
Confidence            6677777654322  111111       11223333333333  56788888764455555533101000  0000000 


Q ss_pred             CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      .....++..+....+   .++.+-.+. ..+.|..  ........ .-...+.++++.  ..||+.-+. ..|.|+++.+
T Consensus       200 ~~~~~p~~i~~l~~~---e~Llc~~~~-~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~  271 (302)
T smart00036      200 ETSLKPISVVQVPRD---EFLLCYDEF-GVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFHD-NGIEIRSIKT  271 (302)
T ss_pred             ccccCceEEEEECCC---eEEEEECcE-EEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEcC-CcEEEEECCC
Confidence            000034444444432   333333333 2333322  11111111 123455677775  468887765 4599999999


Q ss_pred             CCcccc
Q 005956          515 LCFPSS  520 (667)
Q Consensus       515 ~~~~~~  520 (667)
                      +.....
T Consensus       272 ~~l~q~  277 (302)
T smart00036      272 GELLQE  277 (302)
T ss_pred             CceEEE
Confidence            875443

Unpublished observations.

>PRK13684 Ycf48-like protein; Provisional

Probab=87.23  E-value=22  Score=37.37  Aligned_cols=107  Identities=10%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~  383 (667)
                      ...++++.+.+++.++..+..|.+++=..+.+..-....     ....+..+.+.| ++..++ ++.+|.+.. ....++
T Consensus       214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~  290 (334)
T PRK13684        214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGK  290 (334)
T ss_pred             cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCC
Confidence            357888899988855555666776543344443322222     123578889988 665554 556776553 444444


Q ss_pred             EEEe----cccCCceEEEEEeeCCCEEEEEecCCcEEEEE
Q 005956          384 VVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYK  419 (667)
Q Consensus       384 ~~~~----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d  419 (667)
                      .-..    .......+.+.|..+++.++ .+..|.|..|+
T Consensus       291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        291 TWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             CCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            3221    12233577777776666655 45667776664

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=86.74  E-value=41  Score=34.64  Aligned_cols=222  Identities=14%  Similarity=0.102  Sum_probs=103.0

Q ss_pred             ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe--e-C---CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--D-H---HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~--~-h---~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      ...+.+|.|.....-...+..++| +--.+.|+.-...  . .   ......|.|..  ...+++| ..+ +.+...+.+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~DgG   90 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTDGG   90 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETTTEE-EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESSTT
T ss_pred             CCceEEEEEecCCEEEEEecCCEE-EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecCCC
Confidence            457899999865533333445543 2222333322221  1 1   22466777753  4445544 445 344444444


Q ss_pred             eEEEe----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          383 RVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       383 ~~~~~----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      +.-..    .........+....++ .+.+++..|.  ||...+....-+.+....     .+.+..+.-+++| .++++
T Consensus        91 ~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~--iy~T~DgG~tW~~~~~~~-----~gs~~~~~r~~dG-~~vav  161 (302)
T PF14870_consen   91 KTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGA--IYRTTDGGKTWQAVVSET-----SGSINDITRSSDG-RYVAV  161 (302)
T ss_dssp             SS-EE----TT-SS-EEEEEEEETT-EEEEEETT----EEEESSTTSSEEEEE-S---------EEEEEE-TTS--EEEE
T ss_pred             CCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCc--EEEeCCCCCCeeEcccCC-----cceeEeEEECCCC-cEEEE
Confidence            42221    1223344445544554 3333444454  454444443333222111     2678889999986 67777


Q ss_pred             EeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc------cccCccceeE
Q 005956          459 TSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK------QKNSVRSCEH  531 (667)
Q Consensus       459 ~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~------~~~~~~~~~~  531 (667)
                      +.......-||... .-+..... ....|.+|.|+|++...+.+ ..|.|++=+..........      ......-.++
T Consensus       162 s~~G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a  239 (302)
T PF14870_consen  162 SSRGNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLA  239 (302)
T ss_dssp             ETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEE
T ss_pred             ECcccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEE
Confidence            76666666788553 23333322 56889999999998876655 7888887772222111111      1111223457


Q ss_pred             EccCCcEEEEecCCC
Q 005956          532 FFSEGVSVAVQWPGI  546 (667)
Q Consensus       532 fs~dg~~lav~w~~~  546 (667)
                      |.+++.+.|+++++.
T Consensus       240 ~~~~~~~wa~gg~G~  254 (302)
T PF14870_consen  240 YRPPNEIWAVGGSGT  254 (302)
T ss_dssp             ESSSS-EEEEESTT-
T ss_pred             ecCCCCEEEEeCCcc
Confidence            777788777776653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=86.30  E-value=2.3  Score=29.56  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=26.9

Q ss_pred             CcEEEEEEeeCCC--CEEEEEecCCeEEEEecCC
Q 005956          350 NYVTCVQFNPIDD--NYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       350 ~~V~~l~f~p~d~--~~l~sgs~Dg~v~iwdl~~  381 (667)
                      +.|.++.|+|..+  .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998555  6888888889999999985

It contains a characteristic DLL sequence motif.

>PLN02193 nitrile-specifier protein

Probab=85.96  E-value=56  Score=36.09  Aligned_cols=145  Identities=6%  Similarity=-0.050  Sum_probs=70.1

Q ss_pred             eEEEEeCC-------CcEEEEecCCCeEeEEee---CCC--cE-EEEEEeeCCCCEEEEEecC-----CeEEEEecCCCe
Q 005956          322 YLLSCSMD-------KTVRMWQVGCNQCLNVFD---HHN--YV-TCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR  383 (667)
Q Consensus       322 ~l~s~s~D-------g~I~iWd~~~~~~~~~~~---h~~--~V-~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~  383 (667)
                      .++.|+.+       ..+.+||+.+.+-...-.   ...  .. .+++..  ++.+++.|+.+     ..+..||+.+.+
T Consensus       178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            55556543       247788887765432111   111  11 112222  56777777765     358889998876


Q ss_pred             EEEeccc---C-CceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          384 VVDWADV---R-DVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       384 ~~~~~~~---~-~~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      -......   . ......+..-+++.++.|+.++     .+..||+.+......  ...............+.+  ++ +
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~R~~~~~~~~--~g-k  330 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHC--STPGDSFSIRGGAGLEVV--QG-K  330 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeC--CCCCCCCCCCCCcEEEEE--CC-c
Confidence            5543221   1 1111112223566777777543     466788776654321  111100011111122222  33 5


Q ss_pred             EEEEEeCC----CcEEEEECCcc
Q 005956          455 RIMITSED----SKLRILDGVDV  473 (667)
Q Consensus       455 ~l~~~s~d----g~I~iwd~~~~  473 (667)
                      +++.++.+    ..+.+||..+.
T Consensus       331 iyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        331 VWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             EEEEECCCCCccCceEEEECCCC
Confidence            66666654    46888997643

>PRK10115 protease 2; Provisional

Probab=85.96  E-value=76  Score=36.97  Aligned_cols=193  Identities=7%  Similarity=-0.040  Sum_probs=95.8

Q ss_pred             cceEEEEecCCC-eEEEE-eCCC----cEEEEecCCCeEeEE-eeCCCcEEEEEEeeCCCCEEEEEecC------CeEEE
Q 005956          310 GDVLDLAWSNSN-YLLSC-SMDK----TVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSID------GKVRI  376 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~-s~Dg----~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~d~~~l~sgs~D------g~v~i  376 (667)
                      -.+..+.|+|++ +|+.+ ..+|    .|++-|+.++..+.. +....  ..++|.+ |++.|+....+      ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence            456778899999 44433 3333    588999988864322 22222  4589999 77766655442      36888


Q ss_pred             EecCCC--eEEE-ecccCCceE-EEEEeeCCCEEEEEecC---CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          377 WGVCEK--RVVD-WADVRDVIS-AICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       377 wdl~~~--~~~~-~~~~~~~v~-~v~~spdg~~l~~gs~d---g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      +++.++  +-.. +........ .+..+.+++++++.+..   +.+.+|+..........+....     ......+. +
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~-~  277 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-----KDHEYSLD-H  277 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-----CCCEEEEE-e
Confidence            888877  2222 222222233 23334488887765543   4688888532211111111111     12222222 2


Q ss_pred             cCCCeEEEEEeCC-C--cEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          450 RDESQRIMITSED-S--KLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       450 p~g~~~l~~~s~d-g--~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      .. ..+++.+..+ .  .|...++...  ...+........+..+.+. .+.++++...+|.-+++-++
T Consensus       278 ~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        278 YQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            22 2344444332 2  3333344321  1122221123467777776 33455566667765555443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.75  E-value=59  Score=35.54  Aligned_cols=55  Identities=15%  Similarity=0.152  Sum_probs=37.1

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE---e----c-ccCCceEEEEEeeCC
Q 005956          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---W----A-DVRDVISAICYIPDG  403 (667)
Q Consensus       348 h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~---~----~-~~~~~v~~v~~spdg  403 (667)
                      .-...+.|+|.| ++++|++--..|.|++++..++....   +    . ........|+++|+-
T Consensus        28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            345678999999 88776665446999999865543211   1    1 135668899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.67  E-value=16  Score=38.88  Aligned_cols=140  Identities=13%  Similarity=0.124  Sum_probs=85.9

Q ss_pred             CCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--c--ceee
Q 005956          402 DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--D--VIHK  476 (667)
Q Consensus       402 dg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~--~~~~  476 (667)
                      |.+..+.+...|.+.=|-......... .+....     .++|.++.|++|+ +.+++--.+.+|.+++..  +  ....
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d-----~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDD-----KGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeecC-----CCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHH
Confidence            444444444555555565554332221 333333     3799999999995 899999999999999852  1  1111


Q ss_pred             EEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc--cccccccCccceeEEccCCcEEEEecCCCCcc
Q 005956          477 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF--PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTE  549 (667)
Q Consensus       477 ~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~--~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~~  549 (667)
                      .+.......|...+|+.+ .-+|.....| +-+|-+...+.  +........+....|.|+...+..+..-.+..
T Consensus       106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~  178 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENV  178 (657)
T ss_pred             HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccc
Confidence            112224556889999765 5666666444 77777665443  33344556667778889888777766544433

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=85.46  E-value=39  Score=38.69  Aligned_cols=112  Identities=12%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             ceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956          393 VISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  467 (667)
Q Consensus       393 ~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i  467 (667)
                      .-..+.|-|.|..+++-..||     .+.++..++-..  -.+.+   .......+..++|.-.  ..++.....+.|.+
T Consensus       248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH--Gef~l---r~~~dEk~~~~~wn~~--s~vlav~~~n~~~l  320 (1243)
T COG5290         248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH--GEFDL---RVGCDEKAFLENWNLL--STVLAVAEGNLLKL  320 (1243)
T ss_pred             chhccccccCCceeeeeccCCCCCcceEEEEccCCccc--CCccc---cCCchhhhhhhhhhHH--HHHHHHhhcceEEE
Confidence            344588999999999866554     455555443211  11111   0111244566777654  24445566778999


Q ss_pred             EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       468 wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      |-..+..--++.......+.-+.|+|..+.-+--...+.|..-.
T Consensus       321 wttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~  364 (1243)
T COG5290         321 WTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVF  364 (1243)
T ss_pred             EEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEE
Confidence            98776544444333455567788998764432223334444333

>PHA02790 Kelch-like protein; Provisional

Probab=85.33  E-value=58  Score=36.07  Aligned_cols=102  Identities=14%  Similarity=0.120  Sum_probs=54.8

Q ss_pred             CC-eEEEEeCC--CcEEEEecCCCeEeEEeeCCCcE--EEEEEeeCCCCEEEEEecCC---eEEEEecCCCeEEEecccC
Q 005956          320 SN-YLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYV--TCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVR  391 (667)
Q Consensus       320 ~~-~l~s~s~D--g~I~iWd~~~~~~~~~~~h~~~V--~~l~f~p~d~~~l~sgs~Dg---~v~iwdl~~~~~~~~~~~~  391 (667)
                      ++ ..+.||.+  .++..||..+++-...-.-..+.  .+++..  ++.+.+.|+.++   .+..||..+.+-.......
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            45 55566653  45778887665433222211111  122222  678888887654   4778888877654432221


Q ss_pred             Cce-EEEEEeeCCCEEEEEecCCcEEEEEecCCcce
Q 005956          392 DVI-SAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (667)
Q Consensus       392 ~~v-~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~  426 (667)
                      .+. ...+..-+|+..++|   |.+.+||..++...
T Consensus       396 ~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~  428 (480)
T PHA02790        396 YPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWT  428 (480)
T ss_pred             CccccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence            111 111223466666766   45788998776654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.23  E-value=6.2  Score=38.63  Aligned_cols=71  Identities=13%  Similarity=0.221  Sum_probs=48.7

Q ss_pred             CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec---------------ccCCceEEEEEeeCCCEEEEEecCC
Q 005956          349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA---------------DVRDVISAICYIPDGKGFIVGSITG  413 (667)
Q Consensus       349 ~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~---------------~~~~~v~~v~~spdg~~l~~gs~dg  413 (667)
                      ..++..+..   .++++++.+.+|.+++||+.+++.+...               .....|..+.++.+|.-+++- .+|
T Consensus        12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng   87 (219)
T PF07569_consen   12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNG   87 (219)
T ss_pred             CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCC
Confidence            344444443   6788999999999999999998765311               234567777787777655554 456


Q ss_pred             cEEEEEecCC
Q 005956          414 TCHFYKASGN  423 (667)
Q Consensus       414 ~i~l~d~~~~  423 (667)
                      ..+.|+..-.
T Consensus        88 ~~y~y~~~L~   97 (219)
T PF07569_consen   88 DSYSYSPDLG   97 (219)
T ss_pred             CEEEeccccc
Confidence            7777776543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK13684 Ycf48-like protein; Provisional

Probab=85.22  E-value=53  Score=34.46  Aligned_cols=151  Identities=16%  Similarity=0.159  Sum_probs=83.0

Q ss_pred             ccceEEEEecCCCeEEEEeCCCcEEE-EecCCCeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956          309 KGDVLDLAWSNSNYLLSCSMDKTVRM-WQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg~I~i-Wd~~~~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      ...+.++.+.+++.++..+..|.+.. ++ ..++.-...  .....++++.+.+ ++..++.+ ..|.+++=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence            34678888889885556666665543 22 222222222  2445789999998 77766655 5676654334444432


Q ss_pred             Eecc-----cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          386 DWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       386 ~~~~-----~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                      ....     ....+.++.+.|++..+++ +.+|.+.. ....++ ........   .......+.+.|..++  ..++.+
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~-tW~~~~~~---~~~~~~~~~~~~~~~~--~~~~~G  320 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGK-TWEKDPVG---EEVPSNFYKIVFLDPE--KGFVLG  320 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCC-CCeECCcC---CCCCcceEEEEEeCCC--ceEEEC
Confidence            2111     1234788899988775554 45665543 222221 11111100   0112357777877653  556677


Q ss_pred             CCCcEEEEEC
Q 005956          461 EDSKLRILDG  470 (667)
Q Consensus       461 ~dg~I~iwd~  470 (667)
                      ..|.|..|+.
T Consensus       321 ~~G~il~~~~  330 (334)
T PRK13684        321 QRGVLLRYVG  330 (334)
T ss_pred             CCceEEEecC
Confidence            7788877763

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.01  E-value=37  Score=32.57  Aligned_cols=175  Identities=10%  Similarity=0.065  Sum_probs=90.2

Q ss_pred             eEEEEeCC--CcEEEEecCCCeEeEEeeCC-CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEE
Q 005956          322 YLLSCSMD--KTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC  398 (667)
Q Consensus       322 ~l~s~s~D--g~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~  398 (667)
                      ++.+.+.-  ..|++||+.+++.+...... ..+..--.....+.+....-.+|.-..+|.++-+.+......+.=..++
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt  137 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLT  137 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeee
Confidence            55565543  36999999999887765422 2222111111022233334467888899988877665444455444544


Q ss_pred             EeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCC--------CeEEEEEeCCCcEEEE-
Q 005956          399 YIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDE--------SQRIMITSEDSKLRIL-  468 (667)
Q Consensus       399 ~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g--------~~~l~~~s~dg~I~iw-  468 (667)
                        .|++.|+.+....++++-|..+...... ++...+...   ..++.+.|-...        ...+-.--..|.|.-| 
T Consensus       138 --~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv---~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wi  212 (262)
T COG3823         138 --SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPV---SKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI  212 (262)
T ss_pred             --cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeec---ccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence              4566677776666777777766554433 333333211   222333333210        0111122233444333 


Q ss_pred             ECCcceeeEEe-CCCCCCeEEEEEcCCC-CEEEEE
Q 005956          469 DGVDVIHKFKG-LPKSGSQMSASFTTTG-KHIISI  501 (667)
Q Consensus       469 d~~~~~~~~~~-~~~~~~v~~v~~spdg-~~l~sg  501 (667)
                      |+......... ..+....+.+++.|++ +++++|
T Consensus       213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44333222222 1244567788998887 555555

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.92  E-value=41  Score=38.32  Aligned_cols=175  Identities=14%  Similarity=0.259  Sum_probs=88.1

Q ss_pred             cccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE--ee---CCCcEEEEEEeeCCCCEEEEE
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV--FD---HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~--~~---h~~~V~~l~f~p~d~~~l~sg  368 (667)
                      +++..+..+..+.-....+..+.|+.+..|+....||++++|++-.. .+..  .+   ....|..+.|.. +|-.+++ 
T Consensus        68 If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~-~GVavlt-  144 (829)
T KOG2280|consen   68 IFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFH-NGVAVLT-  144 (829)
T ss_pred             EEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEec-CceEEEe-
Confidence            34445555555554444888999999889999999999999998632 2222  21   223455555544 4533333 


Q ss_pred             ecCCeEEE-EecCCCeEEEeccc---CCceEEEEEeeCCCEEE-EEecC--CcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956          369 SIDGKVRI-WGVCEKRVVDWADV---RDVISAICYIPDGKGFI-VGSIT--GTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       369 s~Dg~v~i-wdl~~~~~~~~~~~---~~~v~~v~~spdg~~l~-~gs~d--g~i~l~d~~~~~~~~~~~~~~~~~~~~~~  441 (667)
                       .+|.+.+ -+..........+.   .-.-+|-...+++.... ...-+  --..++...........+      .....
T Consensus       145 -~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~------~~~~~  217 (829)
T KOG2280|consen  145 -VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL------SWPNS  217 (829)
T ss_pred             -cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc------CCCCc
Confidence             3344443 33333222222221   11112222223321111 00111  001222222222211111      11126


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEe
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKG  479 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~  479 (667)
                      .+..+..+|+. .+|+.-...|.|.+-+..  +..+.+..
T Consensus       218 ~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  218 SVVKISVSPNR-RFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             eEEEEEEcCCc-ceEEEEecCCcEEEEecchhhhhhccCC
Confidence            68889999984 788888899999887643  44444443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.61  E-value=44  Score=32.30  Aligned_cols=109  Identities=13%  Similarity=0.182  Sum_probs=68.0

Q ss_pred             EEecCCCeEEEEeCCCcEEEEecC--CCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---C---eEEEE-ecCCC---
Q 005956          315 LAWSNSNYLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G---KVRIW-GVCEK---  382 (667)
Q Consensus       315 l~~s~~~~l~s~s~Dg~I~iWd~~--~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g---~v~iw-dl~~~---  382 (667)
                      ++-...+.|+.+...+.|.+|++.  ..+.+..|..-+.|..+.++. .|+|+++--.+   .   .+|+| +.+..   
T Consensus        23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            333443444444566789999998  445677777778999999999 89999986432   2   56776 22111   


Q ss_pred             -eEE--Eec---------------------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956          383 -RVV--DWA---------------------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (667)
Q Consensus       383 -~~~--~~~---------------------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~  425 (667)
                       +.+  +..                     .....+.+++..|-.-.|++|+ ++.+.+|.+.....
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI  167 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence             111  111                     1234577888778544566665 45888888764433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.41  E-value=55  Score=33.20  Aligned_cols=165  Identities=13%  Similarity=0.149  Sum_probs=105.2

Q ss_pred             EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEE
Q 005956          342 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFY  418 (667)
Q Consensus       342 ~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~  418 (667)
                      .+..+...+-+..+.++   +++.+.+..+.-++|.|+.+...   +......+.-.  ++.-.|++..++..+.-+.++
T Consensus        79 l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay--gv~vsGn~aYVadlddgfLiv  153 (370)
T COG5276          79 LLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY--GVYVSGNYAYVADLDDGFLIV  153 (370)
T ss_pred             eEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE--EEEecCCEEEEeeccCcEEEE
Confidence            33444456667778885   57888888888899999987542   22333333333  444568899998877778889


Q ss_pred             EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-eeeEEeCCCCC-CeEEEEEcCCCC
Q 005956          419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSG-SQMSASFTTTGK  496 (667)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~-~v~~v~~spdg~  496 (667)
                      |+.+...+...-..    ......-..++.+.   ++...+..|+-+.|.|+.+. ..++.+..+.+ .+.++..+++..
T Consensus       154 dvsdpssP~lagry----a~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~  226 (370)
T COG5276         154 DVSDPSSPQLAGRY----ALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA  226 (370)
T ss_pred             ECCCCCCceeeeee----ccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee
Confidence            99876655432111    11123335566664   47777788999999997743 23444443444 677888887766


Q ss_pred             EEEEEeCCCcEEEEEcCCCCcccc
Q 005956          497 HIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       497 ~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                      |++...  --+.+-|..+...++.
T Consensus       227 y~vvy~--egvlivd~s~~ssp~~  248 (370)
T COG5276         227 YLVVYD--EGVLIVDVSGPSSPTV  248 (370)
T ss_pred             EEEEcc--cceEEEecCCCCCceE
Confidence            666553  4477788887765544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=82.85  E-value=65  Score=33.64  Aligned_cols=147  Identities=17%  Similarity=0.229  Sum_probs=80.3

Q ss_pred             CcEEEEEEeeCCCCEEEEEecCCe------EEEEecCC-----CeE-----EEecccCC--------ceEEEEEeeCCCE
Q 005956          350 NYVTCVQFNPIDDNYFISGSIDGK------VRIWGVCE-----KRV-----VDWADVRD--------VISAICYIPDGKG  405 (667)
Q Consensus       350 ~~V~~l~f~p~d~~~l~sgs~Dg~------v~iwdl~~-----~~~-----~~~~~~~~--------~v~~v~~spdg~~  405 (667)
                      +.+..+.+.| ++..+++.+.++.      +..+++..     ..+     ..+....+        ..-+|++.++|.+
T Consensus        20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            4567788887 5566666777777      66555543     111     11112111        3447888677766


Q ss_pred             EEEEecC------CcEEEEEecCCcceeeeEeecc---------ccCcCCCCeEEEEEccCCCeEEEEEeC-----CC--
Q 005956          406 FIVGSIT------GTCHFYKASGNDLKLEKVDFHD---------RKKTSGNKITGIQFSRDESQRIMITSE-----DS--  463 (667)
Q Consensus       406 l~~gs~d------g~i~l~d~~~~~~~~~~~~~~~---------~~~~~~~~I~~l~~sp~g~~~l~~~s~-----dg--  463 (667)
                      +++.=.+      ..|..++.. +.... .+.+..         .....+..+-+++++|+| +.|++...     |+  
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~-~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIR-RFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPR  175 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-Ccccc-eEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCcc
Confidence            6665455      577777766 33322 221111         122345778999999997 44444322     22  


Q ss_pred             c-------EEEE--ECCc---cee--eEEeCC-----CCCCeEEEEEcCCCCEEEE
Q 005956          464 K-------LRIL--DGVD---VIH--KFKGLP-----KSGSQMSASFTTTGKHIIS  500 (667)
Q Consensus       464 ~-------I~iw--d~~~---~~~--~~~~~~-----~~~~v~~v~~spdg~~l~s  500 (667)
                      .       ++|+  |...   ...  .|....     ....+..+.+-+++++|+-
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            1       4454  4332   122  222221     3567788888888887664

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.33  E-value=73  Score=33.88  Aligned_cols=149  Identities=10%  Similarity=0.144  Sum_probs=88.0

Q ss_pred             CCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEee----CCCE--EEEEecC----CcEEEEEecCCcceeeeE
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP----DGKG--FIVGSIT----GTCHFYKASGNDLKLEKV  430 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp----dg~~--l~~gs~d----g~i~l~d~~~~~~~~~~~  430 (667)
                      ...+++....++-+.+||+..+.+..+.  .+.++.+..-.    +|+.  |++++..    ..|++|.+.........+
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            4567777788888999999988776553  23455544322    4443  4455432    469999887433323222


Q ss_pred             eeccc-cCcCCCCeEEEEEc--c-CCCeEEEEEeCCCcEEEEECC---------cceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956          431 DFHDR-KKTSGNKITGIQFS--R-DESQRIMITSEDSKLRILDGV---------DVIHKFKGLPKSGSQMSASFTTTGKH  497 (667)
Q Consensus       431 ~~~~~-~~~~~~~I~~l~~s--p-~g~~~l~~~s~dg~I~iwd~~---------~~~~~~~~~~~~~~v~~v~~spdg~~  497 (667)
                      .-... .......+..+++.  + +|..++++...+|.+..|-+.         +.++.|..   ...+-.|.......+
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDETGR  221 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTTE
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEecccCC
Confidence            11110 11122447788873  3 355688888999988777542         23455554   457888888888889


Q ss_pred             EEEEeCCCcEEEEEcCC
Q 005956          498 IISIGDDCRVYVWNYDE  514 (667)
Q Consensus       498 l~sgs~Dg~I~iWd~~~  514 (667)
                      |+.+-++.-|.-|+.+.
T Consensus       222 LYvgEE~~GIW~y~Aep  238 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEP  238 (381)
T ss_dssp             EEEEETTTEEEEEESSC
T ss_pred             EEEecCccEEEEEecCC
Confidence            99999987777777653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=82.05  E-value=34  Score=30.38  Aligned_cols=106  Identities=14%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             EEEeeCCCCEEEEEecCCeEEEEecCCC--------eEEEecccCCceEEEEEee-----CCCEEEEEecCCcEEEEEec
Q 005956          355 VQFNPIDDNYFISGSIDGKVRIWGVCEK--------RVVDWADVRDVISAICYIP-----DGKGFIVGSITGTCHFYKAS  421 (667)
Q Consensus       355 l~f~p~d~~~l~sgs~Dg~v~iwdl~~~--------~~~~~~~~~~~v~~v~~sp-----dg~~l~~gs~dg~i~l~d~~  421 (667)
                      -.|.. ....|+.++.-++|.|++....        ..+........|++++-.+     +...|++|+. ..+..||+.
T Consensus         4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            34544 3446788888899999987643        2445666778888887655     2356666664 589999998


Q ss_pred             CCcceeeeEeeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEEC
Q 005956          422 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDG  470 (667)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~  470 (667)
                      .+.-...        +.-...|.++.+-.-+  ..-++..+.+..|.-||.
T Consensus        82 ~N~d~Fy--------ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~  124 (136)
T PF14781_consen   82 NNSDLFY--------KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY  124 (136)
T ss_pred             cCchhhh--------hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence            7765432        1112446666552211  123444444455555553

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=80.98  E-value=58  Score=31.87  Aligned_cols=174  Identities=14%  Similarity=0.241  Sum_probs=90.0

Q ss_pred             eEEEEeCCCcEEEEecC--CCeEeEEe------eCCCcEEEEEEeeCCCCEEEEEec-C---------CeEEEEecCCCe
Q 005956          322 YLLSCSMDKTVRMWQVG--CNQCLNVF------DHHNYVTCVQFNPIDDNYFISGSI-D---------GKVRIWGVCEKR  383 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~--~~~~~~~~------~h~~~V~~l~f~p~d~~~l~sgs~-D---------g~v~iwdl~~~~  383 (667)
                      +.+.++..-.|--||..  .....+++      ........-..+| +++++. |.. |         |.++.|-. .++
T Consensus        73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~-GtMad~~~~le~~~g~Ly~~~~-~h~  149 (310)
T KOG4499|consen   73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYG-GTMADFGDDLEPIGGELYSWLA-GHQ  149 (310)
T ss_pred             EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceee-eeeccccccccccccEEEEecc-CCC
Confidence            44455544445557733  22333332      1233455666778 888743 332 1         33444432 223


Q ss_pred             EEEecccCCceEEEEEeeCCCEEEE-EecCCcEEEEE--ecCCcceee--eEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          384 VVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYK--ASGNDLKLE--KVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       384 ~~~~~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d--~~~~~~~~~--~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      +......-..-+.++|+.+.+.+.. -+.+-.|.-||  ..++.....  .+.+........-.--.++...+| ++.++
T Consensus       150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va  228 (310)
T KOG4499|consen  150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVA  228 (310)
T ss_pred             ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEE
Confidence            3223333345577889887776654 44555676676  555544332  222221100000111234444554 67777


Q ss_pred             EeCCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEc-CCCCEEEEE
Q 005956          459 TSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFT-TTGKHIISI  501 (667)
Q Consensus       459 ~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~s-pdg~~l~sg  501 (667)
                      +-..++|...|..+.  ...++.  ....+++++|- ++-..+++.
T Consensus       229 ~~ng~~V~~~dp~tGK~L~eikl--Pt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTTGKILLEIKL--PTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             EecCcEEEEECCCCCcEEEEEEc--CCCceEEEEecCCCccEEEEE
Confidence            778889999997754  444444  57889999994 333344433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	667
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-21
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-21
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-20
2h9l_A	329	Wdr5delta23 Length = 329		5e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-19
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-10
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		6e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		8e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 173 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 232
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 6   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 55
Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 292
           +G +LAS   D +++IW              DG F                         
Sbjct: 56  NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 80
Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 350
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 81  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 409
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 131 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 410 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468
           S  G C  +  ASG  LK    D           ++ ++FS +  + I+  + D+ L++ 
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 241
Query: 469 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 511
           D      +  + G       + A+F+ T GK I+S  +D  VY+WN
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 173 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 232
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 8   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 57
Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 292
           +G +LAS   D +++IW              DG F                         
Sbjct: 58  NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 82
Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 350
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 83  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 409
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 133 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 410 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468
           S  G C  +  ASG  LK    D           ++ ++FS +  + I+  + D+ L++ 
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 243
Query: 469 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 511
           D      +  + G       + A+F+ T GK I+S  +D  VY+WN
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G+C K +       
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450
           D +SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS 
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 451 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 507
           +  + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  V
Sbjct: 206 N-GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 508 YVWN 511
           Y+WN
Sbjct: 265 YIWN 268

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G+C K +       
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450
           D +SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS 
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 451 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 507
           +  + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  V
Sbjct: 206 N-GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 508 YVWN 511
           Y+WN
Sbjct: 265 YIWN 268

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 75
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 76  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 169
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 170 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 221
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 222 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 511 N 511
           N
Sbjct: 282 N 282

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 511 N 511
           N
Sbjct: 271 N 271

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 59  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 511 N 511
           N
Sbjct: 265 N 265

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 54
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 55  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 90  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 148
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 149 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 200
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 201 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 511 N 511
           N
Sbjct: 261 N 261

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 511 N 511
           N
Sbjct: 271 N 271

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 63
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 64  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 99  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 157
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 158 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 209
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 210 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 511 N 511
           N
Sbjct: 270 N 270

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 511 N 511
           N
Sbjct: 271 N 271

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 59
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 60  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 95  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 153
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 154 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 205
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 206 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 511 N 511
           N
Sbjct: 266 N 266

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 59  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 511 N 511
           N
Sbjct: 265 N 265

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 57
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 58  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 93  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 151
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 152 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 203
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 204 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 511 N 511
           N
Sbjct: 264 N 264

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 511 N 511
           N
Sbjct: 268 N 268

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 511 N 511
           N
Sbjct: 268 N 268

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
           +  H   + ++KFSP+G +LA+   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 511 N 511
           N
Sbjct: 268 N 268

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 39/308 (12%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-----HVTSVAASCKS-----FTDDG 265
           Q +  H   +W + FSPDG+ +AS  +D  V++W     H+ ++     S     F+ DG
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 266 GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 324
              ++A           S    V + +   Q+    LQ L GH   V  +A+S +   + 
Sbjct: 357 QTIASA-----------SDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384
           S S DKTV++W         +  H + V  V F+P DD    S S D  V++W    + +
Sbjct: 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLL 460
Query: 385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444
                    +  + + PDG+     S   T   +  +G    L+ +  H       + + 
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS------SSVR 512
Query: 445 GIQFSRDESQRIMITSEDSKLRILD-GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 503
           G+ FS D  Q I   S+D  +++ +    ++    G   S S    +F+  G+ I S   
Sbjct: 513 GVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASS 569
Query: 504 DCRVYVWN 511
           D  V +WN
Sbjct: 570 DKTVKLWN 577

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 54/196 (27%)
Query: 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSS 284
           I ++ FSPDG++LA+G ED ++RIW + +                               
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN------------------------------- 154
Query: 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCNQCL 343
                   ++  I       L GH+ D+  L +  + + L+S S D+TVR+W +   QC 
Sbjct: 155 -------RKIVMI-------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200
Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV--------RDVIS 395
                 + VT V  +P D  Y  +GS+D  VR+W      +V+  D         +D + 
Sbjct: 201 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260
Query: 396 AICYIPDGKGFIVGSI 411
           ++ +  DG+  + GS+
Sbjct: 261 SVVFTRDGQSVVSGSL 276

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 42/268 (15%)
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS------VAASCK---- 259
           T L   + +Q H G +++L ++P+  ++ S  +DG + +W+  +      +   C     
Sbjct: 54  TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 260 -SFTDDG------GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDV 312
            +F  +G      G  S               ++PV              + L GHKG  
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS-------------RVLTGHKGYA 160
Query: 313 LDLAW--SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNY 364
               +       L++ S D+T  +W V   Q +++F       H   V  +  N ++ N 
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 365 FISGSIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA-S 421
           FISGS D  VR+W   +  + V  +      I+++ + PDG+ F  GS  GTC  +   +
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 422 GNDLKLEKVDFHDRKKTSGNKITGIQFS 449
           G+ L++   +  DR       +T + FS
Sbjct: 281 GHQLQVYNRE-PDRNDNELPIVTSVAFS 307

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 182/435 (41%), Gaps = 69/435 (15%)
Query: 117 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKK-----VKKLWKRIIS 171
           ++ + ++D++N  +      SNG+ ++   F+          + K     ++K W  +I 
Sbjct: 2   VLSQRQRDELNRAIADYL-RSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60
Query: 172 MKKR--NVETCMSE-KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTL 228
           ++K+   +E+ ++E K +  S  P   K + K+   +  E  AL        H+  +  +
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYAL------SGHRSPVTRV 114
Query: 229 KFSPDGRYLASGGEDGVVRIWHVTS--VAASCKSFTD---DGGFGSNAXXXXXXXXXXXS 283
            F P    + S  ED  +++W   +     + K  TD   D  F  +            S
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-----S 169
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSMDKTVRMWQVGCNQC 342
           + + + + D  FQ  E  ++ +HGH  +V  ++   N ++++S S DKT++MW+V    C
Sbjct: 170 ADMTIKLWD--FQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 343 LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYI 400
           +  F  H  +V  V+ N  D     S S D  VR+W V  K    +  + R V+  I + 
Sbjct: 227 VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 401 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460
           P+     +   TG+                   + KK+       +  SRD++ ++   S
Sbjct: 286 PESSYSSISEATGS-------------------ETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 461 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY-DELCFPS 519
               L  L G D  +  +G+          F + GK I+S  DD  + VW+Y ++ C   
Sbjct: 327 TGMCLMTLVGHD--NWVRGV---------LFHSGGKFILSCADDKTLRVWDYKNKRCM-- 373
Query: 520 SKQKNSVRSCEHFFS 534
                ++ + EHF +
Sbjct: 374 ----KTLNAHEHFVT 384

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 116/282 (41%), Gaps = 33/282 (11%)
Query: 163 KKLWKRII-------------SMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEF 209
           KK WK  I             S K  N  TC++     NS        E++   K     
Sbjct: 83  KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL 142
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFG 268
             L        H+  I ++K++ DG ++ S   + V  +W+V S          + GG  
Sbjct: 143 NVL------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 269 SNAXXXXXXXXXXXSSHV----PVVIPDE-----VFQI-EESPLQELHGHKGDVLDLAWS 318
            NA                     VIP       V+QI E++P  +L GH G +  L ++
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 319 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           ++N  LLS S D T+R+W  G     N F  H+  + V  + + D+  IS S+DG VR+W
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDDKVISCSMDGSVRLW 315
Query: 378 GVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSITGTCHFY 418
            + +  ++  + V  V I A     DG+ + V  + G  + Y
Sbjct: 316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 302 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI 360
           ++ L+GHK  +  L + +   ++S S D T+R+W + C  CL V + H   V C++F   
Sbjct: 289 VRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--- 344
Query: 361 DDNYFISGSIDGKVRIW 377
           D+   +SG+ DGK+++W
Sbjct: 345 DNKRIVSGAYDGKIKVW 361

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
           + ++ H   +  +  S DG++  SG  DG +R+W +T+   + +         S A    
Sbjct: 80  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 334
                  S    + + + +   + +   E H      +  + ++SN  ++SC  DK V++
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 335 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
           W +  C    N   H  Y+  V  +P D +   SG  DG+  +W + E + +   D  D+
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258
Query: 394 ISAICYIPD 402
           I+A+C+ P+
Sbjct: 259 INALCFSPN 267

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 305 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 356
           L GH G V  +A +    + +LS S DKT+ MW++  ++         +  H ++V+ V 
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 357 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 412
            +  D  + +SGS DG +R+W    G   +R V     +DV+S + +  D +  + GS  
Sbjct: 94  ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 149
Query: 413 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 471
            T   +    N L + K    D   +    ++ ++FS + S  I+++   D  +++ +  
Sbjct: 150 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 472 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514
           +   K   +  +G   + + +  G    S G D +  +W+ +E
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
           + ++ H   +  +  S DG++  SG  DG +R+W +T+   + +         S A    
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 334
                  S    + + + +   + +   E H      +  + ++SN  ++SC  DK V++
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 335 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
           W +  C    N   H  Y+  V  +P D +   SG  DG+  +W + E + +   D  D+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 235
Query: 394 ISAICYIPD 402
           I+A+C+ P+
Sbjct: 236 INALCFSPN 244

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 305 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 356
           L GH G V  +A +    + +LS S DKT+ MW++  ++         +  H ++V+ V 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 357 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 412
            +  D  + +SGS DG +R+W    G   +R V     +DV+S + +  D +  + GS  
Sbjct: 71  ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 126
Query: 413 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 471
            T   +    N L + K    D   +    ++ ++FS + S  I+++   D  +++ +  
Sbjct: 127 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 472 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514
           +   K   +  +G   + + +  G    S G D +  +W+ +E
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 354
           I +  L +L GH G V  L +++   L+S S D+TVR+W +    C +VF+ HN  V C 
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 355 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
             V++  I   Y ++GS D  + +W +  E  V D  +  D    + + P+   + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 412 TG 413
            G
Sbjct: 267 RG 268

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 354
           I +  L +L GH G V  L +++   L+S S D+TVR+W +    C +VF+ HN  V C 
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 355 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
             V++  I   Y ++GS D  + +W +  E  V D  +  D    + + P+   + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 412 TG 413
            G
Sbjct: 267 RG 268

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 44/235 (18%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
            H   + ++ FSPD R + SGG D  +R+W+V      C      G              
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK---GECMHTLSRGAH------------ 151
Query: 280 XXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 339
                       D V  +  SP           LD     +  ++S   D  V++W +  
Sbjct: 152 -----------TDWVSCVRFSP----------SLD-----APVIVSGGWDNLVKVWDLAT 185
Query: 340 NQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC 398
            + + ++  H NYVT V  +P D +   S   DG  R+W + +   +        I+ IC
Sbjct: 186 GRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 399 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           + P+ + ++  +       +     D+ +E    H   K    +   I +S D S
Sbjct: 245 FSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 53/227 (23%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 287
           L+++PDGR+LASGG D +V +W          S   +GG+                    
Sbjct: 236 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 266
Query: 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 343
                        PLQ    H+G V  +AW    SN L +   + D+ +R+W V    CL
Sbjct: 267 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADVRDVISAICYI 400
           +  D H+ V  + ++P      ISG      ++ IW      +V +       + ++   
Sbjct: 315 SAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 373
Query: 401 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447
           PDG      +   T   ++      +L+     +R+K S  K + I 
Sbjct: 374 PDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 416

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 53/227 (23%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 287
           L+++PDGR+LASGG D +V +W          S   +GG+                    
Sbjct: 247 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 277
Query: 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 343
                        PLQ    H+G V  +AW    SN L +   + D+ +R+W V    CL
Sbjct: 278 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADVRDVISAICYI 400
           +  D H+ V  + ++P      ISG      ++ IW      +V +       + ++   
Sbjct: 326 SAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 384
Query: 401 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447
           PDG      +   T   ++      +L+     +R+K S  K + I 
Sbjct: 385 PDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 427

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 50/311 (16%)
Query: 181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 226
           MSE  +   E  +  K +++  +K C + T               + T + ++ H   I+
Sbjct: 1   MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 284
            + +  D R L S  +DG + IW          S+T +        +            +
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 285 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 336
           +V     D +  I     +E        L GH G +    + + N +++ S D T  +W 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 337 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           +   Q    F  H   V  +   P D   F+SG+ D   ++W    G+C +    +    
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451
             I+AIC+ P+G  F  GS   TC  +     DL+ ++             IT + FS+ 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 452 ESQRIMITSED 462
            S R+++   D
Sbjct: 281 -SGRLLLAGYD 290

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 50/311 (16%)
Query: 181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 226
           MSE  +   E  +  K +++  +K C + T               + T + ++ H   I+
Sbjct: 1   MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 284
            + +  D R L S  +DG + IW          S+T +        +            +
Sbjct: 60  AMHWGTDSRLLLSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 285 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 336
           +V     D +  I     +E        L GH G +    + + N +++ S D T  +W 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 337 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
           +   Q    F  H   V  +   P D   F+SG+ D   ++W    G+C +    +    
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451
             I+AIC+ P+G  F  GS   TC  +     DL+ ++             IT + FS+ 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 452 ESQRIMITSED 462
            S R+++   D
Sbjct: 281 -SGRLLLAGYD 290

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 196 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 241
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74
Query: 242 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 75  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 300 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
              +E        L GH G +    + + N +++ S D T  +W +   Q    F  H  
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 352 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 406
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462
             GS   TC  +     DL+ ++             IT + FS+  S R+++   D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 196 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 241
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 26  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 85
Query: 242 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 86  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 300 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
              +E        L GH G +    + + N +++ S D T  +W +   Q    F  H  
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 196
Query: 352 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 406
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 197 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 252
Query: 407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462
             GS   TC  +     DL+ ++             IT + FS+  S R+++   D
Sbjct: 253 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 301

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 196 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 241
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSAS 74
Query: 242 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 75  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 300 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
              +E        L GH G +    + + N +++ S D T  +W +   Q    F  H  
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 352 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 406
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462
             GS   TC  +     DL+ ++             IT + FS+  S R+++   D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 45/136 (33%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 287
           L+++PDGR+LASGG D +V +W          S   +GG+                    
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 186
Query: 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 343
                        PLQ    H+G V  +AW    SN L +   + D+ +R+W V    CL
Sbjct: 187 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 344 NVFDHHNYVTCVQFNP 359
           +  D H+ V  + ++P
Sbjct: 235 SAVDAHSQVCSILWSP 250

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFT--ALYTSQEIQAHKGCIWTLKFSPDGRYLAS 239
           S K K   E+ K + +E+ Q  ++        + T + ++ H   +  + +  D R + S
Sbjct: 22  SLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVS 81
Query: 240 GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
             +DG V +W          SFT +                   S   +       +   
Sbjct: 82  SSQDGKVIVW---------DSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 300 SPL------------QELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF 346
            PL            + +  H   +   +++NS+  +L+ S D T  +W V   Q L  F
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 347 DHHNY-VTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDG 403
             H   V C+   P +  N F+SG  D K  +W +   + V   +  +  ++++ Y P G
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 404 KGFIVGSITGTCHFY 418
             F  GS   TC  Y
Sbjct: 253 DAFASGSDDATCRLY 267

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 55/257 (21%)
Query: 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
           P + L GH   V DLA S  N + +S S DKT+R+W +        F  H + V  V F+
Sbjct: 68  PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 359 PIDDNYFISGSIDGKVRIW---GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTC 415
           P D+   +S   + ++++W   G C+    +  +  D +S + Y P  K      +    
Sbjct: 128 P-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS--ANKVQPFA 184
Query: 416 HFYKASGND--LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 473
            ++ + G D  LK+   +F  R                                      
Sbjct: 185 PYFASVGWDGRLKVWNTNFQIR-------------------------------------- 206
Query: 474 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 533
            + FK    + + +S S    GK+I + G D ++ +W+   L +P  +        +  F
Sbjct: 207 -YTFKAHESNVNHLSIS--PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAF 263
Query: 534 SEGVSVAVQWPGIGTEQ 550
           +      +QW  +GT+Q
Sbjct: 264 NP----KLQWVAVGTDQ 276

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
           + +  H   +  +  S DG++  SG  DG +R+W + +  ++ +         S A    
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY---LLSCSMDKTV 332
                  S    + + + + + + +  +   GH+  V  + +S +     ++S S DKTV
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 333 RMWQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 391
           ++W +  C     +  H  YV+ V  +P D +   SG  DG V +W + E + +   +  
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 392 DVISAICYIPD 402
            VI A+C+ P+
Sbjct: 603 SVIHALCFSPN 613

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 58/172 (33%)
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269
           T L+T   +Q H   +++L+F  DG ++ SG  D  +R+W V +   +C           
Sbjct: 270 TCLHT---LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET--GNC----------- 311
Query: 270 NAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMD 329
                                           +  L GH+     +   + N L+S + D
Sbjct: 312 --------------------------------IHTLTGHQSLTSGMELKD-NILVSGNAD 338
Query: 330 KTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
            TV++W +   QCL        H + VTC+QFN    N+ I+ S DG V++W
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLW 387

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 358
           E+ L  L GH   V  L + +  +++S S+D ++R+W V    C++    H  +T     
Sbjct: 269 ETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-- 325
Query: 359 PIDDNYFISGSIDGKVRIWGV 379
            + DN  +SG+ D  V+IW +
Sbjct: 326 ELKDNILVSGNADSTVKIWDI 346

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
            +
Sbjct: 171 GQ 172

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
            +
Sbjct: 171 GQ 172

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
            +
Sbjct: 171 GQ 172

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
            +
Sbjct: 171 GQ 172

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 46/186 (24%)
Query: 198 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS 257
           ++K    K  +FT +    E  AHK  I ++ + P    LA+G  D  V IW     A  
Sbjct: 35  KIKLVSVKYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA-- 91
Query: 258 CKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW 317
                                             D  F+++   L  + GH+ +V  +AW
Sbjct: 92  ----------------------------------DRTFEMD--LLAIIEGHENEVKGVAW 115
Query: 318 SNSNYLL-SCSMDKTVRMWQVGCN----QCLNVFDHHNY-VTCVQFNPIDDNYFISGSID 371
           SN  Y L +CS DK+V +W+   +    +C++V   H+  V  V ++P  +    S S D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYD 174
Query: 372 GKVRIW 377
             VRIW
Sbjct: 175 DTVRIW 180

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--NAXXXXXXXXXXXS 283
           W L ++P G  LAS G D  +RIW     +  CKS   +G   +               +
Sbjct: 20  WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN-- 340
           S        +  Q +   +  L GH+ +V  +AW+ S N L +CS DK+V +W+V     
Sbjct: 80  SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 341 -QCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 377
            +C++V + H   V  V ++P       S S D  V+++
Sbjct: 140 YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY 177

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 237 LASGGEDGVVRIWH-----VTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIP 291
           +AS   DG VR+W      + +V  + + F +   + S              + VP+   
Sbjct: 32  VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
                  E PL  L GH+G+V  L++ +   ++S S DKT ++W+ G +   N+  H+  
Sbjct: 92  SG-----EDPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWKEG-SLVYNLQAHNAS 144
Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGS 410
           V   +     +N F++ S D  +++W   +K +  ++ +  DV+  +  + DG       
Sbjct: 145 VWDAKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDG------- 196
Query: 411 ITGTCHFYKASGNDLKLEKVDFH 433
                HF   S ND  ++ VD H
Sbjct: 197 -----HFISCS-NDGLIKLVDXH 213

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 220  AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
             HK  +  ++F+ DG+ L S  ED V+++W+           T D  F            
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1051
Query: 280  XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 334
                S +     D   +    I     ++   H+G VL  A S ++    S S DKT ++
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 335  WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
            W       L+    HN  V C  F+ +D     +G  +G++RIW V + +++       V
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 394  ----------ISAICYIPDGKGFI 407
                      ++ +C+ PD K  +
Sbjct: 1171 EEGTATHGGWVTDVCFSPDSKTLV 1194

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 220  AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
             HK  +  ++F+ DG+ L S  ED V+++W+           T D  F            
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1058
Query: 280  XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 334
                S +     D   +    I     ++   H+G VL  A S ++    S S DKT ++
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 335  WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
            W       L+    HN  V C  F+ +D     +G  +G++RIW V + +++       V
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1177
Query: 394  ----------ISAICYIPDGKGFI 407
                      ++ +C+ PD K  +
Sbjct: 1178 EEGTATHGGWVTDVCFSPDSKTLV 1201

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	667
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.8
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.58
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.55
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.54
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.51
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.5
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.46
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.45
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.44
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.4
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.4
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.39
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.38
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.38
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.38
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.38
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.36
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.35
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.29
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.29
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.27
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.26
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.25
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.24
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.22
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.21
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.19
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.11
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.05
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.0
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.82
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.79
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.77
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.76
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.73
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.72
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.67
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.67
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.66
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.66
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.65
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.64
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.6
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.6
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.48
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.47
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.41
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.38
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.33
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.32
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.31
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.29
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.28
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.26
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.24
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.23
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.22
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.21
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.14
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.11
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.09
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.09
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.08
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.06
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.0
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.99
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.99
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.99
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.98
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.95
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.92
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.86
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.86
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.85
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.77
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.72
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.71
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.7
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.68
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.54
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.53
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.47
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.46
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.42
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.26
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.25
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.16
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.15
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.13
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.11
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.1
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.07
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.97
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.96
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.95
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.9
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.89
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.88
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.86
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.73
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.71
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.69
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.65
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.57
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.52
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.5
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.45
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.41
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.29
3ott_A	758	Two-component system sensor histidine kinase; beta	96.26
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.15
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.06
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.01
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.98
3ott_A	758	Two-component system sensor histidine kinase; beta	95.82
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.58
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.52
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.3
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.23
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.14
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.92
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.64
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.62
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.49
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.23
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.13
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.03
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.67
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.28
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.46
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.79
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.65
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.45
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.22
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.73
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.29
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.79
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	86.49
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	86.12
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	84.69
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	83.88
2rr3_B	47	OSBP, oxysterol-binding protein 1; lipid transport	81.55
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.6

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-40  Score=359.12  Aligned_cols=368  Identities=19%  Similarity=0.303  Sum_probs=244.3

Q ss_pred             cccccCCceEEeecccc--cccchhhhhhcCCC--CCCCC---cchhhhHhHHHHHHhhhcccchhhccccCCCCCCCCC
Q 005956          121 LEQDQMNECVVTLEGES--NGFSQSVDKFENPF--PECKG---VNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPK  193 (667)
Q Consensus       121 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (667)
                      |.++|.+++...+..|.  .++...++.|+...  +....   .....+++.|..+.+++++..+.. ............
T Consensus         3 ~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~-~~~~~~~~~~~~   81 (410)
T 1vyh_C            3 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELE-SKLNEAKEEFTS   81 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHH-HHHHHHHHHHhc
Confidence            56677777777777774  56655555555532  11111   112455677888888766532211 110010000000


Q ss_pred             cchhHHhhcccccccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCC
Q 005956          194 ANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE  273 (667)
Q Consensus       194 ~~~~~~~~~~k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~  273 (667)
                      ....  ....+...+.+.......+.+|.++|++++|+|++++||+|+.||+|+|||+.+                    
T Consensus        82 ~~~~--~~~~~~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--------------------  139 (410)
T 1vyh_C           82 GGPL--GQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--------------------  139 (410)
T ss_dssp             ------------CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--------------------
T ss_pred             cCCc--cccCCccccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------------------
Confidence            0001  111112222333444667899999999999999999999999999999999986                    


Q ss_pred             CeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCc
Q 005956          274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY  351 (667)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~  351 (667)
                                               ......+.+|...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...
T Consensus       140 -------------------------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~  194 (410)
T 1vyh_C          140 -------------------------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN  194 (410)
T ss_dssp             -------------------------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred             -------------------------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Confidence                                     34567888999999999999999 99999999999999999999988875 8999


Q ss_pred             EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeE
Q 005956          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  430 (667)
Q Consensus       352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~  430 (667)
                      |.+++|+| ++++|++|+.|++|++||+.++..+. +..|...|.+++++|+|++|++|+.||.|++||+.+......  
T Consensus       195 V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~--  271 (410)
T 1vyh_C          195 VSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE--  271 (410)
T ss_dssp             EEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--
T ss_pred             EEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE--
Confidence            99999999 99999999999999999999988664 667889999999999999999999999999999987765432  


Q ss_pred             eeccccCcCCCCeEEEEEccCC-------------------CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEE
Q 005956          431 DFHDRKKTSGNKITGIQFSRDE-------------------SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF  491 (667)
Q Consensus       431 ~~~~~~~~~~~~I~~l~~sp~g-------------------~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~  491 (667)
                           ...|...|.+++|+|++                   +.+|++++.|+.|++||+...........|...|.+++|
T Consensus       272 -----~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~  346 (410)
T 1vyh_C          272 -----LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF  346 (410)
T ss_dssp             -----ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             -----ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE
Confidence                 22345789999999963                   368999999999999998865555444558899999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecC
Q 005956          492 TTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       492 spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      +|+|++|++|+.|+.|+|||+.+++..... .+...+.++.|+|++.+|+++..
T Consensus       347 ~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999887654332 33455677899999988887644

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-39  Score=371.61  Aligned_cols=409  Identities=17%  Similarity=0.186  Sum_probs=292.1

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-------------ceeeeeeCCCCCccccCC-----CC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-------------AASCKSFTDDGGFGSNAK-----EG  274 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~-------------~~~~~~~~~~~~~~~~~~-----~~  274 (667)
                      ...+.+.+|.+.|++++|+|||++||+|+.||+|+|||+.+.             ....+.|++++..++...     .+
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            445678899999999999999999999999999999998643             233455666654433211     12


Q ss_pred             eEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCc
Q 005956          275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY  351 (667)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~  351 (667)
                      .+.+++.                 ......+.+|...|.+++|+|++  .|++++.|++|++||..+++++..+. |...
T Consensus       130 ~v~~wd~-----------------~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~  192 (611)
T 1nr0_A          130 HVFLFDT-----------------GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF  192 (611)
T ss_dssp             EEEETTT-----------------CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC
T ss_pred             EEEEeeC-----------------CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCc
Confidence            3333331                 23456788999999999999997  69999999999999999999888885 9999


Q ss_pred             EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec--------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  423 (667)
Q Consensus       352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~--------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~  423 (667)
                      |++++|+| ++++|++|+.|++|++||+.+++.....        .|.+.|.+++|+|+|++|++++.|++|++||+.+.
T Consensus       193 V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          193 VHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  271 (611)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            99999999 9999999999999999999988776533        68899999999999999999999999999999876


Q ss_pred             cceeeeEe------------------------------------eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956          424 DLKLEKVD------------------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  467 (667)
Q Consensus       424 ~~~~~~~~------------------------------------~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i  467 (667)
                      +.......                                    .......|...|++++|+|+| .+|++++.|+.|++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~  350 (611)
T 1nr0_A          272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINS  350 (611)
T ss_dssp             EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEE
Confidence            54322100                                    000123467899999999996 89999999999999


Q ss_pred             EECCcceeeEE---------------------------------------------------------------------
Q 005956          468 LDGVDVIHKFK---------------------------------------------------------------------  478 (667)
Q Consensus       468 wd~~~~~~~~~---------------------------------------------------------------------  478 (667)
                      ||+........                                                                     
T Consensus       351 Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~  430 (611)
T 1nr0_A          351 WDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC  430 (611)
T ss_dssp             EETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred             EECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence            99753211000                                                                     


Q ss_pred             -------------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc--ccccccCccceeEEccCCcEEEEec
Q 005956          479 -------------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP--SSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       479 -------------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                                   ...+...+.+++|+|||++||+|+.|+.|++||+.++...  ........+.+++|+|||.+||++.
T Consensus       431 ~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s  510 (611)
T 1nr0_A          431 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD  510 (611)
T ss_dssp             SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEc
Confidence                         0002245678999999999999999999999999876431  1123345567789999999999876


Q ss_pred             CCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhH
Q 005956          544 PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQ  622 (667)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~  622 (667)
                      .+..-  +++........... .....+...+....|||++.+++.|+..+. ..|..+.....  ..           +
T Consensus       511 ~d~~v--~~w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~--~~-----------~  574 (611)
T 1nr0_A          511 QSRKV--IPYSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH--PI-----------I  574 (611)
T ss_dssp             TTSCE--EEEEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC--CE-----------E
T ss_pred             CCCCE--EEEEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc--cc-----------h
Confidence            55432  22211110000000 001113344567899999999999887776 45765432100  00           0


Q ss_pred             HHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956          623 RLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  659 (667)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~  659 (667)
                      .+..|..  ..+.....++.|. ||||+.||+||+|.
T Consensus       575 ~~~~h~~--~~v~~v~fs~d~~-l~s~~~D~~i~lW~  608 (611)
T 1nr0_A          575 IKGAHAM--SSVNSVIWLNETT-IVSAGQDSNIKFWN  608 (611)
T ss_dssp             ETTSSTT--SCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             hhccCcc--cCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence            0111100  0011234456788 89999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.4e-38  Score=326.82  Aligned_cols=281  Identities=15%  Similarity=0.245  Sum_probs=236.3

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      +.+.+++++|.+.|++++|+|++++||+|+.||+|+|||+.++                                     
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------------------------------------   45 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------------------------------------   45 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------------------------------------
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------------------
Confidence            3456788999999999999999999999999999999999862                                     


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                              ..+..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+| ++.+|++|+
T Consensus        46 --------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs  116 (304)
T 2ynn_A           46 --------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGS  116 (304)
T ss_dssp             --------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred             --------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEEC
Confidence                    3467788999999999999998 99999999999999999999988885 999999999999 999999999


Q ss_pred             cCCeEEEEecCCCe-EE-EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          370 IDGKVRIWGVCEKR-VV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~-~~-~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      .|++|++||+.++. +. .+..|...|.+++|+| ++..|++|+.||.|++||++.........      ..+...+..+
T Consensus       117 ~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~------~~~~~~v~~~  190 (304)
T 2ynn_A          117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT------TGQERGVNYV  190 (304)
T ss_dssp             TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE------CCCTTCEEEE
T ss_pred             CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec------cCCcCcEEEE
Confidence            99999999998874 33 3667899999999999 67899999999999999998765433211      1223678999


Q ss_pred             EEccC-CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-cc
Q 005956          447 QFSRD-ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KN  524 (667)
Q Consensus       447 ~~sp~-g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~  524 (667)
                      .|+|. +..+|++++.|+.|++||+...........|...|.+++|+|++++|++|+.||.|+|||+.+++...... ..
T Consensus       191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~  270 (304)
T 2ynn_A          191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL  270 (304)
T ss_dssp             EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC
Confidence            99873 24799999999999999998655555545589999999999999999999999999999999887654432 23


Q ss_pred             CccceeEEccCCc--EEEEecC
Q 005956          525 SVRSCEHFFSEGV--SVAVQWP  544 (667)
Q Consensus       525 ~~~~~~~fs~dg~--~lav~w~  544 (667)
                      ....+++|+|++.  ++|.++.
T Consensus       271 ~~~~~~~~~~~~~~~~~asg~~  292 (304)
T 2ynn_A          271 ERSWCIATHPTGRKNYIASGFD  292 (304)
T ss_dssp             SSEEEEEECTTCGGGCEEEEET
T ss_pred             ccEEEEEECCCCCceEEEEecC
Confidence            3455678888875  4666544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-37  Score=321.45  Aligned_cols=279  Identities=21%  Similarity=0.335  Sum_probs=235.1

Q ss_pred             ceeeccccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          215 SQEIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      .+.+++|.+.|++++|+|+    +.+||||+.|++|+||++.....                                  
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~----------------------------------   70 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL----------------------------------   70 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE----------------------------------
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe----------------------------------
Confidence            3566799999999999985    67999999999999999875211                                  


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                               .....+.+|...|.+++|++++ .+++++.|++|++||+.+++++..+. +...+.+++|+| ++++|++|
T Consensus        71 ---------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g  140 (321)
T 3ow8_A           71 ---------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATG  140 (321)
T ss_dssp             ---------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEE
T ss_pred             ---------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEE
Confidence                     1234678999999999999998 99999999999999999999988885 777899999999 99999999


Q ss_pred             ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      +.|+.|++||+.+++... +..+...|.+++|+|+|++|++|+.||.|++||+++++....       ...|..+|++++
T Consensus       141 ~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~l~  213 (321)
T 3ow8_A          141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-------LEGHAMPIRSLT  213 (321)
T ss_dssp             CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------ECCCSSCCCEEE
T ss_pred             cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-------EcccCCceeEEE
Confidence            999999999999887654 556778899999999999999999999999999987765322       223457899999


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCc
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSV  526 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~  526 (667)
                      |+|++ .+|++++.|+.|++||+...........|...|.+++|+|++++|++++.|+.|+|||+.++...... .....
T Consensus       214 ~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~  292 (321)
T 3ow8_A          214 FSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ  292 (321)
T ss_dssp             ECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc
Confidence            99996 89999999999999998865555555558999999999999999999999999999999988764432 33455


Q ss_pred             cceeEEccCCcEEEEecCC
Q 005956          527 RSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       527 ~~~~~fs~dg~~lav~w~~  545 (667)
                      +..+.|+|+|..|+.+..+
T Consensus       293 v~~v~~s~~g~~l~s~~~d  311 (321)
T 3ow8_A          293 VWGVKYNGNGSKIVSVGDD  311 (321)
T ss_dssp             EEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCC
Confidence            6677999999988876543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.6e-37  Score=321.86  Aligned_cols=282  Identities=21%  Similarity=0.381  Sum_probs=233.2

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc-----------eeeeeeCCCCCc-cccCCCCeEEec
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA-----------ASCKSFTDDGGF-GSNAKEGKIKFG  279 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~  279 (667)
                      +...++|++|.+.|++++|+||+++|++|+.||+|+|||+.++.           ..++.|.+++.. .....++.+.++
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34567899999999999999999999999999999999987653           334456666643 334455666665


Q ss_pred             ccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEe
Q 005956          280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN  358 (667)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~  358 (667)
                      .......           .......+.+|...|.++.|++++.+++++.|++|++||+.+++++..+. |...|.+++|+
T Consensus       125 ~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  193 (340)
T 1got_B          125 NLKTREG-----------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             ETTTCSB-----------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ECccCCC-----------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence            5432211           11235677899999999999999999999999999999999999988885 89999999999


Q ss_pred             eCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956          359 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  437 (667)
Q Consensus       359 p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~  437 (667)
                      | ++++|++|+.|++|++||++++.... +..|...|++++|+|++++|++|+.||.|++||++....... +.    ..
T Consensus       194 ~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~----~~  267 (340)
T 1got_B          194 P-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YS----HD  267 (340)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-EC----CT
T ss_pred             C-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE-Ec----cC
Confidence            9 99999999999999999999987664 667889999999999999999999999999999987654322 11    11


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      .+...|++++|+|+| .+|++++.|+.|++||............|...|.+++|+|+|.+|++|+.|+.|+|||
T Consensus       268 ~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          268 NIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            223579999999996 8999999999999999875544444445899999999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.8e-36  Score=317.75  Aligned_cols=285  Identities=19%  Similarity=0.311  Sum_probs=232.6

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce-----------eeeeeCCCCCc-cccCCCCeEEec
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-----------SCKSFTDDGGF-GSNAKEGKIKFG  279 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~  279 (667)
                      +...++|++|.+.|++|+|+|++++||||+.||+|+|||..+...           .++.|.+++.. .+...++.+.++
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            345678999999999999999999999999999999999876533           34556666643 344556666655


Q ss_pred             ccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEE
Q 005956          280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQF  357 (667)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f  357 (667)
                      ........         ........+.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.+++|
T Consensus       134 ~~~~~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~  204 (354)
T 2pbi_B          134 PLTFDKNE---------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL  204 (354)
T ss_dssp             ECCCCTTC---------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEeccccc---------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE
Confidence            43221110         0113456778999999999999999 99999999999999999999998885 8999999999


Q ss_pred             eeC-CCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956          358 NPI-DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  435 (667)
Q Consensus       358 ~p~-d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~  435 (667)
                      +|. ++++|++|+.|++|++||+++++.+. +..|...|++++|+|+++.|++|+.|++|++||++....... +.    
T Consensus       205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~-~~----  279 (354)
T 2pbi_B          205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI-YS----  279 (354)
T ss_dssp             CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-EC----
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-Ec----
Confidence            883 36899999999999999999988765 567889999999999999999999999999999987644321 11    


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      ...+...+++++|+|++ .+|++++.|+.|++||+.+.........|...|.+++|+|+|++|++|+.|+.|+||+
T Consensus       280 ~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          280 KESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            11223578999999996 8999999999999999876544444556899999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-36  Score=341.48  Aligned_cols=408  Identities=21%  Similarity=0.331  Sum_probs=293.1

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC----------CceeeeeeCCCCCccc-cCCCCeEEecccC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS----------VAASCKSFTDDGGFGS-NAKEGKIKFGKKK  282 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  282 (667)
                      +.++|.+|.+.|++|+|+|||++||+++.|++|+|||+..          ....++.|++++..++ ...++.+.++...
T Consensus        49 ~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~  128 (577)
T 2ymu_A           49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  128 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccc
Confidence            4567889999999999999999999999999999999753          2344556666664332 2222222211100


Q ss_pred             C---------------------------------------------------------------CCceeecC---CCccc
Q 005956          283 S---------------------------------------------------------------SHVPVVIP---DEVFQ  296 (667)
Q Consensus       283 ~---------------------------------------------------------------~~~~~~~~---~~~~~  296 (667)
                      .                                                               ........   -.+|+
T Consensus       129 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~  208 (577)
T 2ymu_A          129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  208 (577)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             cceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEe
Confidence            0                                                               00000000   02344


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                      ...+.+..+.+|...|.+++|+|++ +|++++.|++|++||.. ++.+..+ .|...|.+++|+| +++.|++++.|+.|
T Consensus       209 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i  286 (577)
T 2ymu_A          209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTV  286 (577)
T ss_dssp             TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             CCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEE
Confidence            5566677888999999999999999 99999999999999975 4555555 5999999999999 99999999999999


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      ++||........+..|...|.+++|+|+++.|++++.||.|++||+.......        ...+...|.+++|+|++ .
T Consensus       287 ~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~--------~~~~~~~v~~~~~s~~g-~  357 (577)
T 2ymu_A          287 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT--------LTGHSSSVWGVAFSPDG-Q  357 (577)
T ss_dssp             EEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE--------ECCCSSCEEEEEECTTS-S
T ss_pred             EEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE--------EeCCCCCEEEEEECCCC-C
Confidence            99998776666778899999999999999999999999999999987544321        12345789999999996 8


Q ss_pred             EEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEc
Q 005956          455 RIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  533 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs  533 (667)
                      +|++++.|+.|++||.. .....+..  |...|.+++|+|+|++|++++.|+.|++||...............+..+.|+
T Consensus       358 ~l~~~~~dg~v~~~~~~~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s  435 (577)
T 2ymu_A          358 TIASASDDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS  435 (577)
T ss_dssp             EEEEEETTSEEEEEETTCCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEEEEeCCCEEEEEcCCCCEEEEecC--CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEEC
Confidence            99999999999999965 33444444  7889999999999999999999999999997654333333445556678999


Q ss_pred             cCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccC
Q 005956          534 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDS  612 (667)
Q Consensus       534 ~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~  612 (667)
                      ||+.+|+++..+..  ++++....     .....+..+........|||++.+++.+...+. ..|....-     ... 
T Consensus       436 ~d~~~l~~~~~d~~--v~~w~~~~-----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~-----~~~-  502 (577)
T 2ymu_A          436 PDDQTIASASDDKT--VKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-----LLQ-  502 (577)
T ss_dssp             TTSSEEEEEETTSE--EEEEETTS-----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC-----EEE-
T ss_pred             CCCCEEEEEcCCCE--EEEEECCC-----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC-----EEE-
Confidence            99999998755432  22221110     000112223334556789999999998877665 45653211     000 


Q ss_pred             CCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeeee
Q 005956          613 DGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHN  660 (667)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~~  660 (667)
                                .+..|-.   .......+|.|..||||+.||.||+|.-
T Consensus       503 ----------~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          503 ----------TLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             ----------EEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             ----------EEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence                      0011100   0112345678889999999999999963

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6e-37  Score=325.07  Aligned_cols=280  Identities=15%  Similarity=0.215  Sum_probs=222.2

Q ss_pred             eccccccEEEEEEcCCCCEEEEEEC------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGE------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ..+|++.|++++|||||++||+|+.      |+.|++|+..++...                                  
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~----------------------------------   83 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN----------------------------------   83 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------------------------
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------------------------
Confidence            3479999999999999999999998      667888876643210                                  


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeE-----EeeCCCcEEEEEEeeCCCCEEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN-----VFDHHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~-----~~~h~~~V~~l~f~p~d~~~l~  366 (667)
                             ........+|...|.+++|+|++.+++++.||+|+|||+.+++...     ...|...|++++|+| ++++|+
T Consensus        84 -------~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~  155 (357)
T 4g56_B           84 -------ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV  155 (357)
T ss_dssp             -------GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEE
T ss_pred             -------eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEE
Confidence                   1223445678999999999999988899999999999998876543     235899999999999 999999


Q ss_pred             EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      +|+.|++|++||+.+++.+. +..|...|++++|+|++. .+++++.||.|++||+++.+.... +.    ...+...++
T Consensus       156 sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~~----~~~~~~~v~  230 (357)
T 4g56_B          156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-ID----FCASDTIPT  230 (357)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-CC----CTTCCSCEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-ee----ecccccccc
Confidence            99999999999999998765 667889999999999875 788999999999999987765432 11    122347799


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCccccccc
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQK  523 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  523 (667)
                      +++|+|++..+|++++.|+.|++||+.+.........|...|.+++|+|++ ++||+|+.|++|+|||+++++......+
T Consensus       231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H  310 (357)
T 4g56_B          231 SVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH  310 (357)
T ss_dssp             EEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC
T ss_pred             chhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC
Confidence            999999877899999999999999988654444445588999999999987 6899999999999999999877655555


Q ss_pred             cCccceeEEcc-CCcEEEEecC
Q 005956          524 NSVRSCEHFFS-EGVSVAVQWP  544 (667)
Q Consensus       524 ~~~~~~~~fs~-dg~~lav~w~  544 (667)
                      ...+.+++|+| |+.+||.+..
T Consensus       311 ~~~V~~vafsP~d~~~l~s~s~  332 (357)
T 4g56_B          311 RDFVTGVAWSPLDHSKFTTVGW  332 (357)
T ss_dssp             SSCEEEEEECSSSTTEEEEEET
T ss_pred             CCCEEEEEEeCCCCCEEEEEcC
Confidence            56677789998 7888877543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.1e-37  Score=322.33  Aligned_cols=282  Identities=15%  Similarity=0.214  Sum_probs=221.3

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      ..|...|.+++|+|||++|++++ |+++++||.....                       +...           .....
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~-----------------------~~~~-----------~~~~~   71 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWL-----------------------FKDP-----------CAAPN   71 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEE-----------------------ESSG-----------GGTTC
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeee-----------------------eccc-----------cccCC
Confidence            35788899999999999999888 7789999743100                       0000           00000


Q ss_pred             CCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-----eCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-----~h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                      .........|...|.+++|+|++.|++|+.||+|+|||+.+++++..+     .|...|++++|+| ++++|++|+.|++
T Consensus        72 ~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~  150 (344)
T 4gqb_B           72 EGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDIC  150 (344)
T ss_dssp             GGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             cceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCe
Confidence            111223345678899999999999999999999999999988765443     4899999999999 9999999999999


Q ss_pred             EEEEecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       374 v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      |++||+.+++.+. +..|...|++++|+|++. .|++|+.||.|++||+++.+.... +.    ...+...+++++|+|+
T Consensus       151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~----~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-IG----CSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-CC--------CCCEEEEEECSS
T ss_pred             EEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee-ee----cceeeccceeeeecCC
Confidence            9999999998775 667899999999999885 688999999999999998765433 11    1123467999999998


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCccccccccCcccee
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  530 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~  530 (667)
                      +..+|++++.|+.|+|||+...........|...|.+++|+|++ ++|++|+.|++|+|||+.+++......+...+.++
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v  305 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDA  305 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEE
T ss_pred             CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEE
Confidence            77899999999999999987544433444488999999999998 58999999999999999988765554455567778


Q ss_pred             EEccCCcEEEE
Q 005956          531 HFFSEGVSVAV  541 (667)
Q Consensus       531 ~fs~dg~~lav  541 (667)
                      +|+|++..+.+
T Consensus       306 ~~sp~~~~lla  316 (344)
T 4gqb_B          306 TWSPLNHSLLT  316 (344)
T ss_dssp             EECSSSTTEEE
T ss_pred             EEeCCCCeEEE
Confidence            99999875443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.8e-36  Score=311.73  Aligned_cols=284  Identities=17%  Similarity=0.270  Sum_probs=235.4

Q ss_pred             cccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      +.+..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++......                                 
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---------------------------------   53 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---------------------------------   53 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------------------------------
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------------------------------
Confidence            45567899999999999999965 89999999999999998642110                                 


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                             ...++..+.+|...|.+++|+|++ +|++++.|++|+|||+.+++++..+. |...|.+++|+| ++.+|++|
T Consensus        54 -------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~  125 (319)
T 3frx_A           54 -------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISG  125 (319)
T ss_dssp             -------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred             -------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEE
Confidence                   123467889999999999999999 99999999999999999999988875 999999999999 99999999


Q ss_pred             ecCCeEEEEecCCCeEEEecccCCceEEEEEeeC------CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spd------g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +.|++|++||++...+..+..|...|.+++++|.      +..+++++.|+.|++||++.......       ...|...
T Consensus       126 s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~h~~~  198 (319)
T 3frx_A          126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------FIGHNSN  198 (319)
T ss_dssp             ETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-------ECCCCSC
T ss_pred             eCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-------ecCCCCc
Confidence            9999999999998877788899999999999985      45899999999999999987654322       2234688


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-  521 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-  521 (667)
                      |++++|+|+| .+|++++.|+.|+|||+.......... +...+.+++|+|++.+|++++.+ .|++|+++........ 
T Consensus       199 v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~  275 (319)
T 3frx_A          199 INTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLR  275 (319)
T ss_dssp             EEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEEC
T ss_pred             EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccC
Confidence            9999999996 899999999999999988655444433 45689999999999999998855 5999999875432211 


Q ss_pred             --------cccCccceeEEccCCcEEEEecCCC
Q 005956          522 --------QKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       522 --------~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                              ........++|+|||++|+++..+.
T Consensus       276 ~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence                    1223345689999999999876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-36  Score=323.47  Aligned_cols=298  Identities=21%  Similarity=0.347  Sum_probs=234.6

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce-----------eeeeeCCCCCc-cccCCCCeEE
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-----------SCKSFTDDGGF-GSNAKEGKIK  277 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~  277 (667)
                      ..+...++|++|.+.|++++|+|++++||||+.||+|+|||+.++..           ..+.|.+++.. ++...++.+.
T Consensus        54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~  133 (380)
T 3iz6_a           54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS  133 (380)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred             ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence            34566788999999999999999999999999999999999987543           23445565543 3344455555


Q ss_pred             ecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe------eCC
Q 005956          278 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF------DHH  349 (667)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~------~h~  349 (667)
                      +++.......        .........+.+|.+.|.++.|+|++  .|++|+.|++|++||+.+++++..+      .|.
T Consensus       134 iw~~~~~~~~--------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~  205 (380)
T 3iz6_a          134 IFNLSSQADR--------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT  205 (380)
T ss_dssp             EEECCCCSSC--------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred             EEECCCCccc--------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence            5543321110        00122345678999999999999975  7999999999999999999998877      378


Q ss_pred             CcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-Ce-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee
Q 005956          350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (667)
Q Consensus       350 ~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~  427 (667)
                      ..|.++.|++.++++|++|+.|++|++||++. ++ +..+..|...|++++|+|+|++|++|+.||+|++||++++....
T Consensus       206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~  285 (380)
T 3iz6_a          206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ  285 (380)
T ss_dssp             SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred             cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence            89999999887889999999999999999974 33 34567899999999999999999999999999999999876543


Q ss_pred             eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe----CCCCCCeEEEEEcCCCCEEEEEeC
Q 005956          428 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTGKHIISIGD  503 (667)
Q Consensus       428 ~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~----~~~~~~v~~v~~spdg~~l~sgs~  503 (667)
                      ...........+...|++++|+|+| .+|++++.||.|++||..........    ..|...|.+++|+|+|++|++|+.
T Consensus       286 ~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          286 VYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             EECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             EecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            2111111112233458999999996 89999999999999998654433332    358899999999999999999999


Q ss_pred             CCcEEEEEcCCCC
Q 005956          504 DCRVYVWNYDELC  516 (667)
Q Consensus       504 Dg~I~iWd~~~~~  516 (667)
                      |+.|+||++....
T Consensus       365 D~~i~iW~~~~~~  377 (380)
T 3iz6_a          365 DKNLKIWAFSGHR  377 (380)
T ss_dssp             TSCEEEEECCSSS
T ss_pred             CCCEEEEecCCCc
Confidence            9999999998654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.6e-36  Score=336.72  Aligned_cols=391  Identities=22%  Similarity=0.340  Sum_probs=292.5

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC----------ceeeeeeCCCCCcc-ccCCCCeEEecccC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGGFG-SNAKEGKIKFGKKK  282 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  282 (667)
                      .......|.+.|+++.|+|++++|++++.||.|++||....          ...++.+.+++..+ ....++.+.+|+  
T Consensus       172 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~--  249 (577)
T 2ymu_A          172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--  249 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC--
T ss_pred             eeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEe--
Confidence            34456789999999999999999999999999999996532          23345556655332 334444555443  


Q ss_pred             CCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeC
Q 005956          283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI  360 (667)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~  360 (667)
                                    ...+.+..+.+|...|.+++|+|++ .|++++.|++|++||... +.+..+ .|...|++++|+| 
T Consensus       250 --------------~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~h~~~v~~~~~~~-  313 (577)
T 2ymu_A          250 --------------RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSP-  313 (577)
T ss_dssp             --------------TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECT-
T ss_pred             --------------CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEEEEecCCCCeEEEEECC-
Confidence                          2345677888999999999999999 999999999999999764 455554 5999999999999 


Q ss_pred             CCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~  440 (667)
                      ++++|++++.|++|++||+....+.....+...+.+++|+|+|+++++|+.+|.+++||.... .. ..+      ..|.
T Consensus       314 ~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~~-~~~------~~~~  385 (577)
T 2ymu_A          314 DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LL-QTL------TGHS  385 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC-EE-EEE------ECCS
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC-EE-EEe------cCCC
Confidence            999999999999999999998888888889999999999999999999999999999996532 21 111      2245


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          441 NKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      ..|++++|+|++ .+|++++.|+.|++||.. +....+..  |...|.+++|+|++++|++++.|+.|++||........
T Consensus       386 ~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~  462 (577)
T 2ymu_A          386 SSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT  462 (577)
T ss_dssp             SCEEEEEECTTS-SCEEEEETTSEEEEECTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEE
T ss_pred             CCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCEEEEecC--CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEE
Confidence            789999999996 889999999999999965 33444444  88899999999999999999999999999986554443


Q ss_pred             cccccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCC
Q 005956          520 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATW  598 (667)
Q Consensus       520 ~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w  598 (667)
                      .......+.+++|+|||.+||++..+..  ++++....   ...  ..+..+...+....|||++.+++.+...|. ..|
T Consensus       463 ~~~~~~~v~~~~~spd~~~las~~~d~~--i~iw~~~~---~~~--~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          463 LTGHSSSVRGVAFSPDGQTIASASDDKT--VKLWNRNG---QLL--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEETTSE--EEEEETTS---CEE--EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCE--EEEEcCCC---CEE--EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence            3444556778899999999998754432  22222110   000  122233344566789999999998887776 346


Q ss_pred             CCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956          599 PAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  659 (667)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~  659 (667)
                      ....     ....           -+..|...   ......+|.|..|||+|.||+||+|.
T Consensus       536 d~~~-----~~~~-----------~~~~h~~~---v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          536 NRNG-----QLLQ-----------TLTGHSSS---VWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CTTS-----CEEE-----------EEECCSSC---EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eCCC-----CEEE-----------EEcCCCCC---EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            5311     0000           01111111   10244567898899999999999983

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5e-35  Score=303.36  Aligned_cols=279  Identities=27%  Similarity=0.478  Sum_probs=232.4

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ..+..++.+|.+.|++++|+|+|++||+|+.||.|+||++.++                                     
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-------------------------------------   55 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-------------------------------------   55 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------------------------
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-------------------------------------
Confidence            4456778999999999999999999999999999999998752                                     


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                              +....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+
T Consensus        56 --------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~  126 (312)
T 4ery_A           56 --------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS  126 (312)
T ss_dssp             --------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred             --------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEe
Confidence                    3456678999999999999999 99999999999999999999988885 889999999999 999999999


Q ss_pred             cCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      .|+.|++||+++++.+. +..|...|.+++|+|++++|++|+.||.|++||+++.+.....      ...+...+..++|
T Consensus       127 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~------~~~~~~~~~~~~~  200 (312)
T 4ery_A          127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------IDDDNPPVSFVKF  200 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------CCSSCCCEEEEEE
T ss_pred             CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE------eccCCCceEEEEE
Confidence            99999999999887664 5668889999999999999999999999999999877653321      1123468999999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCccee--eEEeCCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCCccccc-ccc
Q 005956          449 SRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASF-TTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKN  524 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~v~~-spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~  524 (667)
                      +|++ .+|++++.|+.|++||+.+...  .+.++..........+ .+++.+|++|+.||.|++||+.+++..... ...
T Consensus       201 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~  279 (312)
T 4ery_A          201 SPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT  279 (312)
T ss_dssp             CTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred             CCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence            9996 8999999999999999886543  3443322222233334 467899999999999999999988764432 334


Q ss_pred             CccceeEEccCCcEEEEec
Q 005956          525 SVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       525 ~~~~~~~fs~dg~~lav~w  543 (667)
                      ..+..++|+|++..++.+.
T Consensus       280 ~~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          280 DVVISTACHPTENIIASAA  298 (312)
T ss_dssp             SCEEEEEECSSSSEEEEEE
T ss_pred             CcEEEEeecCcCCceEEEE
Confidence            5566779999999998865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-35  Score=308.48  Aligned_cols=282  Identities=22%  Similarity=0.348  Sum_probs=223.6

Q ss_pred             cccceeeccccc-cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          212 LYTSQEIQAHKG-CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       212 ~~~~~~l~~H~~-~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      +.+.+++.+|.+ .|++++|+|+|++||+|+.|++|+|||+.+....+                                
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------------------------   52 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------------------------   52 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------------------
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------------------
Confidence            345678889998 99999999999999999999999999987532110                                


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCCCCEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d~~~l~  366 (667)
                                ......+|...|.+++|+|++ +|++++.|++|+|||+..+.  ++..+ .|...|.+++|+| ++++|+
T Consensus        53 ----------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~  121 (345)
T 3fm0_A           53 ----------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLA  121 (345)
T ss_dssp             ----------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             ----------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEE
Confidence                      012235899999999999999 99999999999999998764  45555 4999999999999 999999


Q ss_pred             EEecCCeEEEEecCCCe---E-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          367 SGSIDGKVRIWGVCEKR---V-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~---~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +|+.|++|++||+.++.   . .....|...|.+++|+|++++|++|+.|+.|++||......... ..    ...|...
T Consensus       122 s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~----~~~h~~~  196 (345)
T 3fm0_A          122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-AT----LEGHEST  196 (345)
T ss_dssp             EEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE-EE----ECCCSSC
T ss_pred             EEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE-EE----ecCCCCc
Confidence            99999999999998753   2 23567888999999999999999999999999999987653321 11    2234588


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCc-----------------ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVD-----------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-----------------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      |++++|+|+| .+|++++.|++|+|||...                 ....+.+ .|...|.+++|+|++.+|++++.|+
T Consensus       197 v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~  274 (345)
T 3fm0_A          197 VWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDD  274 (345)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTS
T ss_pred             eEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCC
Confidence            9999999996 8999999999999998421                 1112222 2778899999999999999999999


Q ss_pred             cEEEEEcCCCCcccc----------ccccCccceeEEccCCc-EEEEec
Q 005956          506 RVYVWNYDELCFPSS----------KQKNSVRSCEHFFSEGV-SVAVQW  543 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~----------~~~~~~~~~~~fs~dg~-~lav~w  543 (667)
                      .|++|+.........          ..+...+.+++|+|++. +||.+.
T Consensus       275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s  323 (345)
T 3fm0_A          275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS  323 (345)
T ss_dssp             CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred             eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence            999999876532111          12234456677888764 555543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.5e-35  Score=308.65  Aligned_cols=284  Identities=20%  Similarity=0.305  Sum_probs=224.5

Q ss_pred             cccceeeccccccEEEEEE-----cC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956          212 LYTSQEIQAHKGCIWTLKF-----SP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~f-----sp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (667)
                      +...++|++|.+.|++++|     ++ ++++||||+.|++|+|||+.+.....                           
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~---------------------------   63 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG---------------------------   63 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------------
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------------
Confidence            3456789999999999999     77 99999999999999999997521100                           


Q ss_pred             ceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCC
Q 005956          286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN  363 (667)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~  363 (667)
                                 ....+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| +++
T Consensus        64 -----------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~  131 (343)
T 2xzm_R           64 -----------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNR  131 (343)
T ss_dssp             -----------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STT
T ss_pred             -----------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCC
Confidence                       0123456788999999999999999 99999999999999999999988875 999999999999 999


Q ss_pred             EEEEEecCCeEEEEecCCCeEEEec---ccCCceEEEEEeeCC----------CEEEEEecCCcEEEEEecCCcceeeeE
Q 005956          364 YFISGSIDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDG----------KGFIVGSITGTCHFYKASGNDLKLEKV  430 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl~~~~~~~~~---~~~~~v~~v~~spdg----------~~l~~gs~dg~i~l~d~~~~~~~~~~~  430 (667)
                      +|++++.|++|++||+.........   .|...|.+++|+|++          .+|++++.||.|++||.. ....   .
T Consensus       132 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~---~  207 (343)
T 2xzm_R          132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIR---Y  207 (343)
T ss_dssp             EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEE---E
T ss_pred             EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Ccee---E
Confidence            9999999999999999865554433   678889999999987          789999999999999943 2211   1


Q ss_pred             eeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          431 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       431 ~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                      .+    ..|...|++++|+|+| .+|++++.|+.|++||+...........+...|.+++|+|++.+|+++ .|+.|++|
T Consensus       208 ~~----~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw  281 (343)
T 2xzm_R          208 TF----KAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIF  281 (343)
T ss_dssp             EE----ECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred             EE----cCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence            12    2345789999999996 899999999999999984321111111245679999999999988765 57889999


Q ss_pred             EcCCCCccc--cc------------cccCccceeEEccCCcEEEEecC
Q 005956          511 NYDELCFPS--SK------------QKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       511 d~~~~~~~~--~~------------~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ++.++....  ..            .......+++|+|+|..|+++..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  329 (343)
T 2xzm_R          282 NLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT  329 (343)
T ss_dssp             ESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred             EeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC
Confidence            998765422  11            12233556789999888887654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8e-35  Score=304.06  Aligned_cols=245  Identities=18%  Similarity=0.340  Sum_probs=217.9

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ...+.+|...|++++|+|++.+|++|+.|++|+|||+.++                                        
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~----------------------------------------  112 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG----------------------------------------  112 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Confidence            4467899999999999999999999999999999999863                                        


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                           +.+..+..|...+.+++|+|++ +|++++.|++|++|++.+++....+. |...|.+++|+| ++++|++|+.|+
T Consensus       113 -----~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg  186 (321)
T 3ow8_A          113 -----KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDG  186 (321)
T ss_dssp             -----EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             -----CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCC
Confidence                 3456677888899999999999 99999999999999999998887775 778999999999 999999999999


Q ss_pred             eEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       373 ~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      .|++||+.+++.+. +..|...|.+++|+|++++|++|+.||.|++||++.......       ...|...|++++|+|+
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-------LSGHASWVLNVAFCPD  259 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE-------ECCCSSCEEEEEECTT
T ss_pred             eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE-------EcCCCCceEEEEECCC
Confidence            99999999998765 567888999999999999999999999999999987665322       2234578999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      + .+|++++.|+.|+|||+.+.........|...|.+++|+|++++|++++.||.|+|||+.
T Consensus       260 ~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          260 D-THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             C-CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            6 799999999999999998766555555689999999999999999999999999999964

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-34  Score=329.98  Aligned_cols=285  Identities=19%  Similarity=0.276  Sum_probs=223.2

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+++.+|.+.|++++|+|||++||+|+.|++|+|||+.++......                                
T Consensus       181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~--------------------------------  228 (611)
T 1nr0_A          181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF--------------------------------  228 (611)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC--------------------------------
T ss_pred             eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee--------------------------------
Confidence            345678899999999999999999999999999999998864321100                                


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-------------------------
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-------------------------  346 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-------------------------  346 (667)
                            ........+|.+.|.+++|+|++ +|++++.|++|+|||+.+++++..+                         
T Consensus       229 ------~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  302 (611)
T 1nr0_A          229 ------EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA  302 (611)
T ss_dssp             ------BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred             ------ccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence                  00001122799999999999999 9999999999999999987765432                         


Q ss_pred             -------------------eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec-------------------
Q 005956          347 -------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA-------------------  388 (667)
Q Consensus       347 -------------------~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~-------------------  388 (667)
                                         .|...|++++|+| ++++|++++.|++|++||+.+++.....                   
T Consensus       303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l  381 (611)
T 1nr0_A          303 NGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL  381 (611)
T ss_dssp             TCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred             CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence                               3788999999999 9999999999999999998765432211                   


Q ss_pred             ----------------------------------------------------------------ccCCceEEEEEeeCCC
Q 005956          389 ----------------------------------------------------------------DVRDVISAICYIPDGK  404 (667)
Q Consensus       389 ----------------------------------------------------------------~~~~~v~~v~~spdg~  404 (667)
                                                                                      .+...+.+++|+|||+
T Consensus       382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~  461 (611)
T 1nr0_A          382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ  461 (611)
T ss_dssp             EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred             EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence                                                                            0123467899999999


Q ss_pred             EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEE--eCC
Q 005956          405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFK--GLP  481 (667)
Q Consensus       405 ~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~--~~~  481 (667)
                      +|++|+.|++|++||+.+........      ..|...|++++|+|+| ++|++++.|++|++||+.+ ......  ...
T Consensus       462 ~lasgs~D~~v~lwd~~~~~~~~~~~------~~h~~~v~~v~fspdg-~~las~s~d~~v~~w~~~~~~~~~~~~~~~~  534 (611)
T 1nr0_A          462 FVAVGGQDSKVHVYKLSGASVSEVKT------IVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTF  534 (611)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEE------EECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             EEEEeCCCCeEEEEEccCCceeeeec------cCCCCceEEEEECCCC-CEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence            99999999999999998764422111      2245789999999996 8999999999999999865 222111  122


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc---c-ccccCccceeEEccCCcEEEEecC
Q 005956          482 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS---S-KQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       482 ~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~---~-~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      |...|.+++|+|||++||+|+.|++|+||+++++....   . .|....+..+.|+||+. |+.+..
T Consensus       535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~  600 (611)
T 1nr0_A          535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQ  600 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEET
T ss_pred             cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecC
Confidence            88999999999999999999999999999998865322   2 23245667789999998 665543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=305.93  Aligned_cols=248  Identities=18%  Similarity=0.267  Sum_probs=203.6

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .|...|++++|+|++ +|++|+.||+|+|||+.++....                                         
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~-----------------------------------------  117 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI-----------------------------------------  117 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE-----------------------------------------
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee-----------------------------------------
Confidence            477889999999986 78899999999999998643211                                         


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      .....+.+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|.+..+|++|+.|++|++|
T Consensus       118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw  197 (344)
T 4gqb_B          118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW  197 (344)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence            1123456899999999999999 99999999999999999999999886 999999999999445689999999999999


Q ss_pred             ecCCCeEEEe---cccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          378 GVCEKRVVDW---ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       378 dl~~~~~~~~---~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      |+++++....   ..+...+.+++|+|+ +++|++|+.||.|++||+++.+....   +    ..|...|++++|+|++.
T Consensus       198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~---~----~~h~~~v~~v~fsp~g~  270 (344)
T 4gqb_B          198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS---S----AVHSQCVTGLVFSPHSV  270 (344)
T ss_dssp             ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE---E----ECCSSCEEEEEECSSSS
T ss_pred             cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE---E----cCCCCCEEEEEEccCCC
Confidence            9999886643   234567999999995 56888999999999999998765432   2    23457899999999976


Q ss_pred             eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCc
Q 005956          454 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      .+|++++.|++|+|||+.... .+....|...|.+++|+|+++ +|+++|.|++|++|++.+...
T Consensus       271 ~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          271 PFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             CCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             eEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            789999999999999987543 234456899999999999986 577999999999999987654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-34  Score=298.19  Aligned_cols=251  Identities=20%  Similarity=0.309  Sum_probs=208.7

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ..+.+|.+.|++++|+|+|++||||+.|++|+||++...                                         
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-----------------------------------------   41 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-----------------------------------------   41 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-----------------------------------------
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-----------------------------------------
Confidence            457799999999999999999999999999999998741                                         


Q ss_pred             cccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCC--CCEEEE
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS  367 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d--~~~l~s  367 (667)
                        ..+.+.++.+|.+.|.+++|+++  + +|++|+.|++|+|||+.+++  .+..+ .|...|.+++|+| +  +.+|++
T Consensus        42 --~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s  118 (297)
T 2pm7_B           42 --THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLV  118 (297)
T ss_dssp             --CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred             --CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEE
Confidence              12456788999999999999863  5 99999999999999998874  44444 4889999999999 5  789999


Q ss_pred             EecCCeEEEEecCCCe---EEEecccCCceEEEEEeeC-------------CCEEEEEecCCcEEEEEecCCcceee-eE
Q 005956          368 GSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPD-------------GKGFIVGSITGTCHFYKASGNDLKLE-KV  430 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~---~~~~~~~~~~v~~v~~spd-------------g~~l~~gs~dg~i~l~d~~~~~~~~~-~~  430 (667)
                      ++.|++|++||++++.   ......|...|.+++|+|+             +++|++|+.|+.|++||+++...... ..
T Consensus       119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~  198 (297)
T 2pm7_B          119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  198 (297)
T ss_dssp             EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE
Confidence            9999999999998763   3446678889999999997             57999999999999999987653322 11


Q ss_pred             eeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCcce-----eeEEeCCCCCCeEEEEEcCCCCEEEEEeC
Q 005956          431 DFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGD  503 (667)
Q Consensus       431 ~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v~~v~~spdg~~l~sgs~  503 (667)
                      .+    ..|...|.+++|+|++  ..+|++++.|++|+|||+....     ..+....+...|.+++|+|+|++||+++.
T Consensus       199 ~l----~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          199 TL----EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             EE----CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             Ee----cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence            22    3356899999999985  4799999999999999976421     12222346788999999999999999999


Q ss_pred             CCcEEEEEcCC
Q 005956          504 DCRVYVWNYDE  514 (667)
Q Consensus       504 Dg~I~iWd~~~  514 (667)
                      |+.|+||+...
T Consensus       275 D~~v~lw~~~~  285 (297)
T 2pm7_B          275 DNKVTLWKENL  285 (297)
T ss_dssp             TSCEEEEEECT
T ss_pred             CCcEEEEEECC
Confidence            99999999763

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.4e-35  Score=316.74  Aligned_cols=246  Identities=24%  Similarity=0.398  Sum_probs=216.1

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+.+++|.+.|++++|+|+|++||+|+.||+|+|||+.+                                       
T Consensus       141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~---------------------------------------  181 (410)
T 1vyh_C          141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG---------------------------------------  181 (410)
T ss_dssp             CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS---------------------------------------
T ss_pred             cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------------------------------------
Confidence            34567899999999999999999999999999999999975                                       


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                            ...+..+.+|...|.+++|+|++ +|++|+.|++|++||+.++.++..+. |...|.++.|+| ++.+|++|+.
T Consensus       182 ------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~  254 (410)
T 1vyh_C          182 ------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSN  254 (410)
T ss_dssp             ------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEET
T ss_pred             ------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcC
Confidence                  23466778999999999999999 99999999999999999999988885 889999999999 9999999999


Q ss_pred             CCeEEEEecCCCeEEE-ecccCCceEEEEEeeC--------------------CCEEEEEecCCcEEEEEecCCcceeee
Q 005956          371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPD--------------------GKGFIVGSITGTCHFYKASGNDLKLEK  429 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spd--------------------g~~l~~gs~dg~i~l~d~~~~~~~~~~  429 (667)
                      |++|++||+.+++... +..|...|.+++|+|+                    |.+|++|+.||.|++||++++..... 
T Consensus       255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~-  333 (410)
T 1vyh_C          255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT-  333 (410)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred             CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE-
Confidence            9999999999987654 6678899999999996                    67899999999999999987765332 


Q ss_pred             EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005956          430 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV  509 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i  509 (667)
                        +    ..|...|++++|+|+| .+|++++.|+.|++||+...........|...|.+++|+|++.+|++|+.||.|+|
T Consensus       334 --~----~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          334 --L----VGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             --E----ECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             --E----ECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence              2    2245789999999996 89999999999999998754333333348899999999999999999999999999


Q ss_pred             EEc
Q 005956          510 WNY  512 (667)
Q Consensus       510 Wd~  512 (667)
                      |++
T Consensus       407 W~~  409 (410)
T 1vyh_C          407 WEC  409 (410)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.1e-34  Score=305.90  Aligned_cols=295  Identities=17%  Similarity=0.249  Sum_probs=222.2

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +|.+.|++++|+|||++||+|+ |+.++||++.++.............                           .....
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------------~~~~~  113 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------------KDPEN  113 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------------ccccc
Confidence            6999999999999999999976 7899999998754432211000000                           00000


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      ........+...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...|++++|+| ++++|++++.|++|++|
T Consensus       114 ~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iw  192 (393)
T 1erj_A          114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW  192 (393)
T ss_dssp             -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEE
Confidence            0011122345569999999999 99999999999999999999888875 999999999999 99999999999999999


Q ss_pred             ecCCCeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          378 GVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       378 dl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                      |+.+++......+...+.+++|+| ++++|++|+.||.|++||+++................|...|++++|+|+| .+|
T Consensus       193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l  271 (393)
T 1erj_A          193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSV  271 (393)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEE
T ss_pred             ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEE
Confidence            999999887777888899999999 899999999999999999987765432111111123466899999999996 899


Q ss_pred             EEEeCCCcEEEEECCcc------------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cc
Q 005956          457 MITSEDSKLRILDGVDV------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QK  523 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~~~------------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~  523 (667)
                      ++++.|+.|++||+...            ........|...|.+++|+|++++|++|+.|+.|++||+.++...... .+
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h  351 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  351 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            99999999999997632            112233348889999999999999999999999999999988754332 22


Q ss_pred             cCccceeEEcc------CCcEEEEecC
Q 005956          524 NSVRSCEHFFS------EGVSVAVQWP  544 (667)
Q Consensus       524 ~~~~~~~~fs~------dg~~lav~w~  544 (667)
                      ...+.++.|++      ++.++|.+..
T Consensus       352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~  378 (393)
T 1erj_A          352 RNSVISVAVANGSSLGPEYNVFATGSG  378 (393)
T ss_dssp             SSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             CCCEEEEEecCCcCcCCCCCEEEEECC
Confidence            33344456554      5666665433

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=296.72  Aligned_cols=281  Identities=19%  Similarity=0.247  Sum_probs=212.8

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      +.+.++|++|.+.|++++|+|+  +||+|+.|++|+||++.....                                   
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-----------------------------------   46 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-----------------------------------   46 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----------------------------------
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----------------------------------
Confidence            3456788999999999999998  999999999999999975211                                   


Q ss_pred             CCcccccCCcceee-ec-cccceEEEEecCCC-eEEEEeCCCcEEEEecCC-------CeEeEEe-eCCCcEEEEEEeeC
Q 005956          292 DEVFQIEESPLQEL-HG-HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVF-DHHNYVTCVQFNPI  360 (667)
Q Consensus       292 ~~~~~~~~~~~~~l-~g-h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-------~~~~~~~-~h~~~V~~l~f~p~  360 (667)
                              .....+ .+ |...|.+++|+|++ +|++++.|++|+|||+..       .+++..+ .|...|++++|+| 
T Consensus        47 --------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-  117 (330)
T 2hes_X           47 --------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-  117 (330)
T ss_dssp             --------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-
T ss_pred             --------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-
Confidence                    112333 34 99999999999999 999999999999999853       3455555 4999999999999 


Q ss_pred             CCCEEEEEecCCeEEEEecCCC----eEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956          361 DDNYFISGSIDGKVRIWGVCEK----RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  435 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~----~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~  435 (667)
                      ++++|++|+.|++|++||+...    +.+ .+..|...|.+++|+|++++|++|+.|++|++||......... ..    
T Consensus       118 ~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~-~~----  192 (330)
T 2hes_X          118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV-AV----  192 (330)
T ss_dssp             TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-EE----
T ss_pred             CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE-EE----
Confidence            9999999999999999999532    333 4667889999999999999999999999999999986532211 11    


Q ss_pred             cCcCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCcc--------eeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          436 KKTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGVDV--------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g-~~~l~~~s~dg~I~iwd~~~~--------~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      ...|...|.+++|+|++ ..+|++++.|++|++||+...        ....... .|...|.+++|++++ +|++++.||
T Consensus       193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg  271 (330)
T 2hes_X          193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG  271 (330)
T ss_dssp             ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred             ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence            23346899999999983 268999999999999997532        1112222 278899999999765 899999999


Q ss_pred             cEEEEEcCCCCc--cc---cccccCccceeEEcc--CCcEEEEecC
Q 005956          506 RVYVWNYDELCF--PS---SKQKNSVRSCEHFFS--EGVSVAVQWP  544 (667)
Q Consensus       506 ~I~iWd~~~~~~--~~---~~~~~~~~~~~~fs~--dg~~lav~w~  544 (667)
                      .|+||+..++..  ..   ..+....+.++.|+|  ++.+||.+..
T Consensus       272 ~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~  317 (330)
T 2hes_X          272 VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD  317 (330)
T ss_dssp             CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred             EEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence            999999987632  11   122222566778888  6777776544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.4e-34  Score=333.91  Aligned_cols=279  Identities=16%  Similarity=0.259  Sum_probs=236.8

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      +...+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+                                      
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--------------------------------------   44 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--------------------------------------   44 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------------------------------------
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC--------------------------------------
Confidence            345678899999999999999999999999999999999986                                      


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                             +..+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|++++|+| ++.+|++++
T Consensus        45 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~  116 (814)
T 3mkq_A           45 -------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGS  116 (814)
T ss_dssp             -------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred             -------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEc
Confidence                   23467788999999999999999 99999999999999999999988886 999999999999 999999999


Q ss_pred             cCCeEEEEecCCC-eEE-EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          370 IDGKVRIWGVCEK-RVV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       370 ~Dg~v~iwdl~~~-~~~-~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      .||.|++||+.++ ... ....|...|.+++|+| +++.|++++.||.|++||+.+........      ..+...+..+
T Consensus       117 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~------~~~~~~v~~~  190 (814)
T 3mkq_A          117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT------TGQERGVNYV  190 (814)
T ss_dssp             TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE------CCCTTCCCEE
T ss_pred             CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe------cCCCCCEEEE
Confidence            9999999999886 443 4567889999999999 89999999999999999998765543311      1123779999


Q ss_pred             EEcc--CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cc
Q 005956          447 QFSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QK  523 (667)
Q Consensus       447 ~~sp--~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~  523 (667)
                      +|+|  ++ .++++++.|+.|++||............|...|.+++|+|++++|++++.||.|++||+.++...... ..
T Consensus       191 ~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          191 DYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             EECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             EEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            9999  74 79999999999999998765544444458889999999999999999999999999999987654432 23


Q ss_pred             cCccceeEEccCCc--EEEEec
Q 005956          524 NSVRSCEHFFSEGV--SVAVQW  543 (667)
Q Consensus       524 ~~~~~~~~fs~dg~--~lav~w  543 (667)
                      .....++.|+|+|.  +++++.
T Consensus       270 ~~~v~~~~~~~~~~~~~~~~~~  291 (814)
T 3mkq_A          270 LERSWCIATHPTGRKNYIASGF  291 (814)
T ss_dssp             SSSEEEEEECTTCGGGEEEEEE
T ss_pred             CCcEEEEEEccCCCceEEEEEe
Confidence            34566778999987  455543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.8e-33  Score=291.98  Aligned_cols=246  Identities=17%  Similarity=0.321  Sum_probs=206.1

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.+++|...|++++|+|+|++|++|+.|++|+|||+.++                                        
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~----------------------------------------   97 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG----------------------------------------   97 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC----------------------------------------
Confidence            4578899999999999999999999999999999999862                                        


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC-----CCCEEEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-----DDNYFISG  368 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~-----d~~~l~sg  368 (667)
                           +.+..+.+|...|.+++|+|++ +|++++.|++|++||+..........|...|.++.|.|.     ++.+|+++
T Consensus        98 -----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~  172 (319)
T 3frx_A           98 -----ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA  172 (319)
T ss_dssp             -----EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred             -----CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence                 3467788999999999999999 999999999999999986555455569999999999983     23489999


Q ss_pred             ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      +.|+.|++||+.+.+... +..|...|.+++|+|+|++|++|+.||.|++||+.+.+.... +  ..     ...|.+++
T Consensus       173 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~-~--~~-----~~~v~~~~  244 (319)
T 3frx_A          173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT-L--SA-----QDEVFSLA  244 (319)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE-E--EC-----CSCEEEEE
T ss_pred             eCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-e--cC-----CCcEEEEE
Confidence            999999999999987654 678999999999999999999999999999999987765432 2  11     26799999


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCcceeeEEeC--------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGL--------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      |+|++ .++++++. +.+++|++..........        .+...+.+++|+|||++|++|+.||.|+|||+.+.
T Consensus       245 ~sp~~-~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          245 FSPNR-YWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             ECSSS-SEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EcCCC-CEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            99996 67776665 459999976433222211        23567899999999999999999999999998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.9e-33  Score=342.63  Aligned_cols=396  Identities=17%  Similarity=0.253  Sum_probs=292.1

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc-----------eeeeeeCCCCCcc-ccCCCCeEEecccC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA-----------ASCKSFTDDGGFG-SNAKEGKIKFGKKK  282 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~  282 (667)
                      ...+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++.           +.++.|++++..+ +...++.+.+|+..
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            34678999999999999999999999999999999998653           3455667766433 34455666666544


Q ss_pred             CCCceeecCCCcccccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEe
Q 005956          283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN  358 (667)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~  358 (667)
                      .               .+.+..+.+|...|.+++|+|+  + .+++++.|++|++||+.+++++..+. |...|++++|+
T Consensus       688 ~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s  752 (1249)
T 3sfz_A          688 T---------------GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS  752 (1249)
T ss_dssp             T---------------CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred             C---------------CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence            2               3557788899999999999994  3 88999999999999999999888774 99999999999


Q ss_pred             eCCCCEEEEEecCCeEEEEecCCCeEEEe---------------------------------------------------
Q 005956          359 PIDDNYFISGSIDGKVRIWGVCEKRVVDW---------------------------------------------------  387 (667)
Q Consensus       359 p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~---------------------------------------------------  387 (667)
                      | ++++|++++.||+|++||+.+++....                                                   
T Consensus       753 p-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~  831 (1249)
T 3sfz_A          753 P-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL  831 (1249)
T ss_dssp             S-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred             c-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence            9 999999999999999999977643211                                                   


Q ss_pred             -----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          388 -----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       388 -----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                           ..+...|.+++|+|+++.+++++.+|.|++||+.+......       ...|...|++++|+|+| .++++++.|
T Consensus       832 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~-------~~~h~~~v~~v~~spdg-~~l~s~s~d  903 (1249)
T 3sfz_A          832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD-------CRGHLSWVHGVMFSPDG-SSFLTASDD  903 (1249)
T ss_dssp             EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee-------cCCCccceEEEEECCCC-CEEEEEeCC
Confidence                 14567789999999999999999999999999987654322       12345778888888875 678888888


Q ss_pred             CcEEEEECC-----------------------------------------------------------------------
Q 005956          463 SKLRILDGV-----------------------------------------------------------------------  471 (667)
Q Consensus       463 g~I~iwd~~-----------------------------------------------------------------------  471 (667)
                      +.|++||+.                                                                       
T Consensus       904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g  983 (1249)
T 3sfz_A          904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG  983 (1249)
T ss_dssp             SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence            888888732                                                                       


Q ss_pred             --------cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956          472 --------DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       472 --------~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                              ..........|...|.+++|+|+|++|++++.||.|++||+.++..............+.|++++.+++.+.
T Consensus       984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 1063 (1249)
T 3sfz_A          984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF 1063 (1249)
T ss_dssp             CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEES
T ss_pred             CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEC
Confidence                    111111223477889999999999999999999999999999988766656666677789999888776655


Q ss_pred             CCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhH
Q 005956          544 PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQ  622 (667)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~  622 (667)
                      .+.   ++++.......  .  ..+..+........|||++.+++.+...|. ..|........    . .  +      
T Consensus      1064 dg~---v~vwd~~~~~~--~--~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~----~-~--l------ 1123 (1249)
T 3sfz_A         1064 DGT---VKVWNVITGRI--E--RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL----H-E--L------ 1123 (1249)
T ss_dssp             SSE---EEEEETTTTCC--C--EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS----B-C--C------
T ss_pred             CCc---EEEEECCCCce--e--EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee----e-e--e------
Confidence            432   22222111100  0  111223344567789999999998888777 44654422111    0 0  0      


Q ss_pred             HHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956          623 RLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  659 (667)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~  659 (667)
                        ..+-   ........++.|..|||++.||.|++|.
T Consensus      1124 --~~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1124 --KGHN---GCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             --CCCS---SCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             --ccCC---CcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence              0000   0011244577899999999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=289.79  Aligned_cols=280  Identities=19%  Similarity=0.252  Sum_probs=236.0

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ......|.+|.+.|++++|+|+|++||+|+.||.|+|||+.+                                      
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------------------------------------   63 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--------------------------------------   63 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--------------------------------------
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--------------------------------------
Confidence            344467889999999999999999999999999999999986                                      


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                             .+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+.+...|.+++|+| ++++|++++.
T Consensus        64 -------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  135 (369)
T 3zwl_B           64 -------GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILD  135 (369)
T ss_dssp             -------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSSEEEEEEC
T ss_pred             -------chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEcc-CCCEEEEecC
Confidence                   34567788999999999999998 99999999999999999999999999999999999999 9999999999


Q ss_pred             C-----CeEEEEecCCCeE------------EEecccCC--ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEe
Q 005956          371 D-----GKVRIWGVCEKRV------------VDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  431 (667)
Q Consensus       371 D-----g~v~iwdl~~~~~------------~~~~~~~~--~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~  431 (667)
                      +     +.|++||+.....            .....+..  .+.+++|+|+++.|++++.+|.|++||+++.......+.
T Consensus       136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  215 (369)
T 3zwl_B          136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID  215 (369)
T ss_dssp             CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred             CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence            9     9999999876531            12333444  899999999999999999999999999987433333332


Q ss_pred             eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC------
Q 005956          432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC------  505 (667)
Q Consensus       432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg------  505 (667)
                      .      +...|.+++|+|++ .+|++++.|+.|++||+.......... +...+..++|+|+++++++++.++      
T Consensus       216 ~------~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  287 (369)
T 3zwl_B          216 L------HEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTT  287 (369)
T ss_dssp             C------CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC------
T ss_pred             c------CCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEE
Confidence            2      34789999999995 899999999999999988644433332 678899999999999999999988      


Q ss_pred             --------cEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecCC
Q 005956          506 --------RVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       506 --------~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                              .|++||+.+++..... .....+.++.|+|+|.+|+++..+
T Consensus       288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  336 (369)
T 3zwl_B          288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED  336 (369)
T ss_dssp             -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence                    8999999988765443 344566778999999999987654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.4e-33  Score=297.36  Aligned_cols=249  Identities=17%  Similarity=0.299  Sum_probs=202.5

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      ...+|.+.|++++|+|+++ +++++.||+|+|||+.++...                                       
T Consensus        89 ~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~---------------------------------------  128 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESL---------------------------------------  128 (357)
T ss_dssp             EEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-----------------------------------------------
T ss_pred             ccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecccccee---------------------------------------
Confidence            3457999999999999986 556788999999999863221                                       


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                        ........+|...|++++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|....++++++.|++|
T Consensus       129 --~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v  206 (357)
T 4g56_B          129 --LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI  206 (357)
T ss_dssp             --CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred             --EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce
Confidence              01123455899999999999999 99999999999999999999998886 899999999999444689999999999


Q ss_pred             EEEecCCCeEEE---ecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          375 RIWGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       375 ~iwdl~~~~~~~---~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      ++||+++++...   ...+...+++++|+|+ +.+|++|+.|+.|++||+++.+....       ...+...|++++|+|
T Consensus       207 ~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-------~~~~~~~v~~l~~sp  279 (357)
T 4g56_B          207 LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-------SAVHSQNITGLAYSY  279 (357)
T ss_dssp             EECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-------ECCCSSCEEEEEECS
T ss_pred             EEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-------EeccceeEEEEEEcC
Confidence            999999887654   3446678999999997 56888999999999999988765432       223457899999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 005956          451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ++..+|++++.|++|+|||+..... +....|...|++++|+| ++++|++++.||.|++|++...
T Consensus       280 ~~~~~lasgs~D~~i~iwd~~~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          280 HSSPFLASISEDCTVAVLDADFSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSSCCEEEEETTSCEEEECTTSCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            9878899999999999999875433 33346899999999998 7999999999999999999764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.1e-33  Score=294.54  Aligned_cols=246  Identities=18%  Similarity=0.373  Sum_probs=203.2

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.+.+|.+.|++++|+|++.+|++|+.|++|+|||+.+                                         
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-----------------------------------------  107 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-----------------------------------------  107 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-----------------------------------------
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-----------------------------------------
Confidence            356789999999999999999999999999999999986                                         


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCC--------
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDD--------  362 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~--------  362 (667)
                          .+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.........   .|...|.+++|+| ++        
T Consensus       108 ----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~  182 (343)
T 2xzm_R          108 ----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQP  182 (343)
T ss_dssp             ----SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCS
T ss_pred             ----CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCC
Confidence                24467788999999999999999 9999999999999999854433333   4888999999999 55        


Q ss_pred             --CEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956          363 --NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       363 --~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~  440 (667)
                        .+|++++.|++|++||........+..|...|.+++|+|+|++|++|+.||.|++||+.........+.       +.
T Consensus       183 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~  255 (343)
T 2xzm_R          183 FAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-------AG  255 (343)
T ss_dssp             SCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-------CS
T ss_pred             CCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-------CC
Confidence              799999999999999966555556778999999999999999999999999999999954443322221       13


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--e--eEEe---------CCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005956          441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--H--KFKG---------LPKSGSQMSASFTTTGKHIISIGDDCRV  507 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~--~~~~---------~~~~~~v~~v~~spdg~~l~sgs~Dg~I  507 (667)
                      ..|.+++|+|++ .++ +++.|+.|++||+....  .  .+..         ..|...+.+++|+|+|++|++|+.||.|
T Consensus       256 ~~v~~v~~sp~~-~~l-a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v  333 (343)
T 2xzm_R          256 STINQIAFNPKL-QWV-AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI  333 (343)
T ss_dssp             SCEEEEEECSSS-CEE-EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEE
T ss_pred             CcEEEEEECCCC-CEE-EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceE
Confidence            569999999996 555 45668889999976422  1  2221         1467789999999999999999999999


Q ss_pred             EEEEcCCC
Q 005956          508 YVWNYDEL  515 (667)
Q Consensus       508 ~iWd~~~~  515 (667)
                      ++|+++++
T Consensus       334 ~~w~~~~g  341 (343)
T 2xzm_R          334 RTFSFETS  341 (343)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEcc
Confidence            99998764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3e-32  Score=284.65  Aligned_cols=283  Identities=16%  Similarity=0.260  Sum_probs=229.4

Q ss_pred             cccceeeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      +.+..+|+||++.|++|+|+|+ +++||||+.||+|+|||+.+....                                 
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---------------------------------   74 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---------------------------------   74 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence            3455689999999999999997 689999999999999999863211                                 


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                             ...+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..+.+++ ++++|+++
T Consensus        75 -------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~  146 (340)
T 4aow_A           75 -------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG  146 (340)
T ss_dssp             -------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred             -------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceee
Confidence                   123466788999999999999999 99999999999999999988877765 777888999999 89999999


Q ss_pred             ecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCC--CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          369 SIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg--~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      +.|+.+++||+.......  ...+...+..++|++++  ..+++++.|+.|++||+++......       ...|...|+
T Consensus       147 s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-------~~~h~~~v~  219 (340)
T 4aow_A          147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-------HIGHTGYLN  219 (340)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-------ECCCSSCEE
T ss_pred             cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-------ecCCCCcEE
Confidence            999999999998766543  55678899999999865  5688899999999999988765432       223458899


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc----
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS----  520 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~----  520 (667)
                      +++|+|++ .+|++++.|+.|++||+.......... +...+.+++|+|++.++ +++.|+.|+|||+++......    
T Consensus       220 ~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~  296 (340)
T 4aow_A          220 TVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQE  296 (340)
T ss_dssp             EEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC
T ss_pred             EEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccc
Confidence            99999996 899999999999999998665544443 45689999999987655 556799999999987654221    


Q ss_pred             ------ccccCccceeEEccCCcEEEEecCC
Q 005956          521 ------KQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       521 ------~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                            ......+.+++|+|||.+|+++..+
T Consensus       297 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTD  327 (340)
T ss_dssp             -------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred             ceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence                  1223445678999999998886543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=290.42  Aligned_cols=256  Identities=20%  Similarity=0.326  Sum_probs=206.4

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      ..+|.+.|++++|+|+|++||+|+.|++|+||++.....                                         
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-----------------------------------------   95 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-----------------------------------------   95 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-----------------------------------------
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-----------------------------------------
Confidence            368999999999999999999999999999999875211                                         


Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe---EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~---~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                        ..+..+.+|...|.+++|+|++ +|++++.|++|++||+.++.   ++..+ .|...|.+++|+| ++.+|++|+.|+
T Consensus        96 --~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~  172 (345)
T 3fm0_A           96 --ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDD  172 (345)
T ss_dssp             --EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTS
T ss_pred             --EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCC
Confidence              2356788999999999999999 99999999999999998763   34444 4899999999999 999999999999


Q ss_pred             eEEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee--------eE-eeccccCcCC
Q 005956          373 KVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KV-DFHDRKKTSG  440 (667)
Q Consensus       373 ~v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~--------~~-~~~~~~~~~~  440 (667)
                      +|++||+.++..   ..+..|...|.+++|+|+|++|++|+.||+|++||.........        .. ........|.
T Consensus       173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  252 (345)
T 3fm0_A          173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS  252 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred             cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence            999999988753   34678899999999999999999999999999999754321110        00 0000011256


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc------eeeE---EeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 005956          441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDV------IHKF---KGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVW  510 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~------~~~~---~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iW  510 (667)
                      ..|.+++|+|++ ..|++++.|+.|++|+....      ...+   ....|...|.+++|+|++ .+||+|+.||.|++|
T Consensus       253 ~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          253 RTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             SCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             CcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence            789999999996 78999999999999986421      1111   123588999999999998 499999999999999


Q ss_pred             EcCCCCcc
Q 005956          511 NYDELCFP  518 (667)
Q Consensus       511 d~~~~~~~  518 (667)
                      ++.+.+..
T Consensus       332 ~~~~~~~~  339 (345)
T 3fm0_A          332 KYQRPEGL  339 (345)
T ss_dssp             EECC----
T ss_pred             EecCCCCc
Confidence            99887643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.3e-34  Score=295.15  Aligned_cols=248  Identities=20%  Similarity=0.291  Sum_probs=198.6

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      +.+.+|.+.|++++|+|+|++||||+.|++|+|||+.++..                                       
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------------------------   47 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------------------------   47 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence            45679999999999999999999999999999999975211                                       


Q ss_pred             cccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCC--CCEEEE
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS  367 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d--~~~l~s  367 (667)
                          ..+..+.+|.+.|.+++|+++  + +|++|+.|++|+|||+.+++  .+..+ .|...|.+++|+| +  +.+|++
T Consensus        48 ----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~las  122 (316)
T 3bg1_A           48 ----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILAC  122 (316)
T ss_dssp             ----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEE
T ss_pred             ----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEE
Confidence                135678899999999999863  5 99999999999999999874  44444 4899999999999 5  789999


Q ss_pred             EecCCeEEEEecCCCeE----EEecccCCceEEEEEeeC-----------------CCEEEEEecCCcEEEEEecCCcce
Q 005956          368 GSIDGKVRIWGVCEKRV----VDWADVRDVISAICYIPD-----------------GKGFIVGSITGTCHFYKASGNDLK  426 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~----~~~~~~~~~v~~v~~spd-----------------g~~l~~gs~dg~i~l~d~~~~~~~  426 (667)
                      |+.|++|++||+..+..    .....|...+.+++|+|+                 +++|++|+.|+.|++||++.....
T Consensus       123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~  202 (316)
T 3bg1_A          123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW  202 (316)
T ss_dssp             ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred             EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence            99999999999987632    224567788999999997                 478999999999999999754211


Q ss_pred             eeeEeeccccCcCCCCeEEEEEccCC---CeEEEEEeCCCcEEEEECCcc------eeeEEeCCCCCCeEEEEEcCCCCE
Q 005956          427 LEKVDFHDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKH  497 (667)
Q Consensus       427 ~~~~~~~~~~~~~~~~I~~l~~sp~g---~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~~spdg~~  497 (667)
                      .....    ...|...|.+++|+|++   ..+|++++.|++|+|||+...      ...+..  |...|.+++|+|++++
T Consensus       203 ~~~~~----l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~  276 (316)
T 3bg1_A          203 KEEQK----LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANI  276 (316)
T ss_dssp             EEEEC----CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCC
T ss_pred             ceeee----cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCE
Confidence            11111    23456899999999985   368999999999999997641      123333  6789999999999999


Q ss_pred             EEEEeCCCcEEEEEcC
Q 005956          498 IISIGDDCRVYVWNYD  513 (667)
Q Consensus       498 l~sgs~Dg~I~iWd~~  513 (667)
                      ||+++.|+.|+||+..
T Consensus       277 las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          277 LAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEESSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEC
Confidence            9999999999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.1e-32  Score=282.02  Aligned_cols=273  Identities=15%  Similarity=0.248  Sum_probs=230.2

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      .+|.+.|++++|+|++++|++++ ||.|+||++.+...                                          
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~------------------------------------------   84 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN------------------------------------------   84 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC------------------------------------------
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc------------------------------------------
Confidence            47999999999999999999999 99999999986321                                          


Q ss_pred             CCcceeee--ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          299 ESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       299 ~~~~~~l~--gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                      ...+..+.  +|...|.+++|+|++ +|++++.|+.|++||+.+++  ....+ .|...|.+++|+| ++++|++++.|+
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  163 (337)
T 1gxr_A           85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDG  163 (337)
T ss_dssp             CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCC
Confidence            12233333  789999999999999 89999999999999999887  34444 4888999999999 999999999999


Q ss_pred             eEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       373 ~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      .|++||+.+++... +..|...+.+++|+|+++.|++++.||.|++||+++.+.... +.       +...+.+++|+|+
T Consensus       164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~-------~~~~v~~~~~s~~  235 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HD-------FTSQIFSLGYCPT  235 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EE-------CSSCEEEEEECTT
T ss_pred             cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ec-------CCCceEEEEECCC
Confidence            99999999988765 556888999999999999999999999999999987765432 11       2467999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeE
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  531 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  531 (667)
                      + .++++++.++.|++||+..... .....|...+.+++|+|++++|++++.||.|++||+.+++.............+.
T Consensus       236 ~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~  313 (337)
T 1gxr_A          236 G-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD  313 (337)
T ss_dssp             S-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             C-CEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEE
Confidence            6 8999999999999999875433 3445588999999999999999999999999999999987765554556677789


Q ss_pred             EccCCcEEEEecCC
Q 005956          532 FFSEGVSVAVQWPG  545 (667)
Q Consensus       532 fs~dg~~lav~w~~  545 (667)
                      |+|++..++++...
T Consensus       314 ~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          314 ISVDDKYIVTGSGD  327 (337)
T ss_dssp             ECTTSCEEEEEETT
T ss_pred             ECCCCCEEEEecCC
Confidence            99999998886543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=302.88  Aligned_cols=280  Identities=16%  Similarity=0.275  Sum_probs=223.9

Q ss_pred             ccccEEEEEEcCCCC-EEEEE----------ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          221 HKGCIWTLKFSPDGR-YLASG----------GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       221 H~~~I~~v~fspdg~-~Latg----------s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      |...|.+++|+|+|+ +||+|          +.|+.|+||++.+...                                 
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~---------------------------------   57 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS---------------------------------   57 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG---------------------------------
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC---------------------------------
Confidence            445789999999997 99999          8999999999986321                                 


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC----CeEeEEe-eCCCcEEEEEEeeCCCC
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DHHNYVTCVQFNPIDDN  363 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~----~~~~~~~-~h~~~V~~l~f~p~d~~  363 (667)
                               .+++..+ .|...|.+++|+|++ +|++++.|+.|++||+.+    .+.+..+ .|...|++++|+|.+++
T Consensus        58 ---------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  127 (416)
T 2pm9_A           58 ---------EKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN  127 (416)
T ss_dssp             ---------CSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT
T ss_pred             ---------CcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC
Confidence                     0122223 588899999999999 999999999999999987    3466655 49999999999993389


Q ss_pred             EEEEEecCCeEEEEecCCCe------EE-E---ecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956          364 YFISGSIDGKVRIWGVCEKR------VV-D---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDF  432 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl~~~~------~~-~---~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~  432 (667)
                      +|++++.|+.|++||+.+++      .. .   ...|...|.+++|+|+ +..|++++.||.|++||+++.+.... +..
T Consensus       128 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~  206 (416)
T 2pm9_A          128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH-LSY  206 (416)
T ss_dssp             BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEE-ECC
T ss_pred             EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceE-Eec
Confidence            99999999999999999876      22 1   3567889999999999 78999999999999999988665332 222


Q ss_pred             ccccCcCCCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCcc---eeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCC
Q 005956          433 HDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVDV---IHKFKGLPKSGSQMSASFTT-TGKHIISIGDDC  505 (667)
Q Consensus       433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg---~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg  505 (667)
                      +.....+...|++++|+|++..++++++.|+   .|++||+...   ...+. ..|...|.+++|+| ++++|++++.||
T Consensus       207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg  285 (416)
T 2pm9_A          207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDN  285 (416)
T ss_dssp             CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred             cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCC
Confidence            2222223588999999999777999999999   9999998753   23332 04888999999999 999999999999


Q ss_pred             cEEEEEcCCCCccccc-cccCccceeEEccCC-cEEEEecCC
Q 005956          506 RVYVWNYDELCFPSSK-QKNSVRSCEHFFSEG-VSVAVQWPG  545 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg-~~lav~w~~  545 (667)
                      .|++||+.+++..... .....+..+.|+|++ .+++++..+
T Consensus       286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred             CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence            9999999988764433 334556678999999 777776543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9e-33  Score=296.80  Aligned_cols=250  Identities=24%  Similarity=0.430  Sum_probs=208.6

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .|...|++++|+|+|++||+|+.||+|+|||+.+.                                             
T Consensus       121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~---------------------------------------------  155 (393)
T 1erj_A          121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR---------------------------------------------  155 (393)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT---------------------------------------------
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCC---------------------------------------------
Confidence            34556999999999999999999999999999862                                             


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      +.+..+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+.+...+.+++|+|.++++|++|+.|+.|++||
T Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd  235 (393)
T 1erj_A          156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD  235 (393)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred             cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            3456788999999999999999 999999999999999999999999999999999999997889999999999999999


Q ss_pred             cCCCeEEEe--------cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee-----EeeccccCcCCCCeEE
Q 005956          379 VCEKRVVDW--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-----VDFHDRKKTSGNKITG  445 (667)
Q Consensus       379 l~~~~~~~~--------~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~-----~~~~~~~~~~~~~I~~  445 (667)
                      +.+++.+..        ..|...|.+++|+|+|++|++|+.||.|++||++........     .........|...|.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  315 (393)
T 1erj_A          236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS  315 (393)
T ss_dssp             TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred             CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence            999876642        457889999999999999999999999999999864322110     0000012234578999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC------CCCEEEEEeCCCcEEEEEcCCC
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT------TGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp------dg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ++|+|++ .+|++++.|+.|++||............|...|.+++|++      ++++|++|+.||.|+||++...
T Consensus       316 ~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          316 VATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            9999996 8999999999999999876544444445889999999976      6889999999999999998653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=288.70  Aligned_cols=254  Identities=24%  Similarity=0.361  Sum_probs=193.5

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +|.+.|++++|+|++++||+|+.|++|+||++......                                      ....
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------------------------~~~~   97 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------------------------TFEM   97 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------------------------CCC
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------------------------cccc
Confidence            49999999999999999999999999999998641100                                      0012


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC----CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                      ..+..+.+|...|.+++|+|++ +|++|+.|++|++||+..    .+++..+. |...|.+++|+| ++.+|++|+.|++
T Consensus        98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~  176 (330)
T 2hes_X           98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDT  176 (330)
T ss_dssp             EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred             eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence            3466788999999999999999 999999999999999943    24566664 899999999999 9999999999999


Q ss_pred             EEEEecCCC--eE-EEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceee-eEee-ccccCcCCCCeEEE
Q 005956          374 VRIWGVCEK--RV-VDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE-KVDF-HDRKKTSGNKITGI  446 (667)
Q Consensus       374 v~iwdl~~~--~~-~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~-~~~~~~~~~~I~~l  446 (667)
                      |++||+.++  +. ..+..|...|.+++|+|+  +..|++|+.|++|++||+........ .... ......|...|.++
T Consensus       177 i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  256 (330)
T 2hes_X          177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV  256 (330)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE
T ss_pred             EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEE
Confidence            999999876  33 346778999999999998  77899999999999999975421110 1011 11112256889999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcce--eeE-EeCCCCC-CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCC
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVI--HKF-KGLPKSG-SQMSASFTT--TGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~-~~~~~~~-~v~~v~~sp--dg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      +|++++  +|++++.|+.|+|||.....  ... ....|.. .|.+++|+|  ++++|++|+.||.|+||+++.
T Consensus       257 ~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          257 AWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            999764  89999999999999976432  111 1234665 899999999  789999999999999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-32  Score=293.19  Aligned_cols=282  Identities=11%  Similarity=0.175  Sum_probs=223.5

Q ss_pred             ccccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      .....+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+....                                
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------------------  109 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT--------------------------------  109 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE--------------------------------
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc--------------------------------
Confidence            445566888999999999999999 99999999999999999863211                                


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCE
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~  364 (667)
                                 ....+.+|...|.+++|+| ++ +|++++.|++|++||+.+........   |...|.+++|+| ++++
T Consensus       110 -----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  177 (383)
T 3ei3_B          110 -----------SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQM  177 (383)
T ss_dssp             -----------EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TTTE
T ss_pred             -----------eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CCCE
Confidence                       1122347999999999999 55 99999999999999999644433333   447899999999 9999


Q ss_pred             EEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956          365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                      |++|+.|+.|++||+....+..+..|...|.+++|+|+++ .|++|+.||.|++||+++.......+...    .+...|
T Consensus       178 l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v  253 (383)
T 3ei3_B          178 LATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPV  253 (383)
T ss_dssp             EEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCE
T ss_pred             EEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCce
Confidence            9999999999999997666667888999999999999999 89999999999999999744322211111    235899


Q ss_pred             EEEEEcc-CCCeEEEEEeCCCcEEEEECCc--ceeeEEeCC-----C----------CCCeEEEEEcCCCCEEEEEeCCC
Q 005956          444 TGIQFSR-DESQRIMITSEDSKLRILDGVD--VIHKFKGLP-----K----------SGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       444 ~~l~~sp-~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~-----~----------~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      ++++|+| ++ .+|++++.|+.|++||+.+  ....+..+.     +          ...+..++|+|+|++  +++.|+
T Consensus       254 ~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~  330 (383)
T 3ei3_B          254 NAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKR  330 (383)
T ss_dssp             EEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCC
T ss_pred             EEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCC
Confidence            9999999 75 8999999999999999874  334444321     1          134555677777776  778999


Q ss_pred             cEEEEEcCCCCcccccc---ccCccceeEEccCCcEEEEec
Q 005956          506 RVYVWNYDELCFPSSKQ---KNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~~~---~~~~~~~~~fs~dg~~lav~w  543 (667)
                      .|+|||+.+++......   ......++.|+|+|.+||++.
T Consensus       331 ~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             CEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred             eEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence            99999999887644432   345667779999999999984

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=290.24  Aligned_cols=255  Identities=20%  Similarity=0.298  Sum_probs=214.4

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      +.+.+.+|.+.|++++|+|++++||+|+.||.|+||++....                                      
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--------------------------------------   44 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--------------------------------------   44 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------------
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--------------------------------------
Confidence            356788999999999999999999999999999999997321                                      


Q ss_pred             cccccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCe--EeEEee-CCCcEEEEEEeeCC--CCEE
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVFD-HHNYVTCVQFNPID--DNYF  365 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~--~~~~~~-h~~~V~~l~f~p~d--~~~l  365 (667)
                           ...+..+.+|...|++++|+++  + +|++++.|++|++||+.+++  .+..+. |...|.+++|+| +  +.+|
T Consensus        45 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l  118 (379)
T 3jrp_A           45 -----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLL  118 (379)
T ss_dssp             -----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEE
T ss_pred             -----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEE
Confidence                 2345678899999999999876  6 99999999999999999986  455554 889999999999 7  8999


Q ss_pred             EEEecCCeEEEEecCCCe---EEEecccCCceEEEEEee-------------CCCEEEEEecCCcEEEEEecCCcceeee
Q 005956          366 ISGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEK  429 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~---~~~~~~~~~~v~~v~~sp-------------dg~~l~~gs~dg~i~l~d~~~~~~~~~~  429 (667)
                      ++++.|+.|++||+..+.   ......+...|.+++|+|             ++..|++|+.||.|++||+++.......
T Consensus       119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  198 (379)
T 3jrp_A          119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  198 (379)
T ss_dssp             EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence            999999999999998873   345667889999999999             6999999999999999999877654331


Q ss_pred             EeeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCcc-----eeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956          430 VDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDV-----IHKFKGLPKSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~~v~~v~~spdg~~l~sgs  502 (667)
                      ..   ....|...|++++|+|++  +.+|++++.|+.|++||+...     ........+...+.+++|+|+|++|++++
T Consensus       199 ~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          199 ES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             EE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EE---EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence            11   123346889999999994  489999999999999998753     23333344788999999999999999999


Q ss_pred             CCCcEEEEEcCCC
Q 005956          503 DDCRVYVWNYDEL  515 (667)
Q Consensus       503 ~Dg~I~iWd~~~~  515 (667)
                      .||.|+||++...
T Consensus       276 ~dg~i~iw~~~~~  288 (379)
T 3jrp_A          276 GDNKVTLWKENLE  288 (379)
T ss_dssp             SSSSEEEEEEEET
T ss_pred             CCCcEEEEeCCCC
Confidence            9999999999854

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3e-32  Score=314.72  Aligned_cols=283  Identities=16%  Similarity=0.252  Sum_probs=229.7

Q ss_pred             cccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      +.....+++|++.|++|+|+|++ .+|+||+.||+|+||++......                                 
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~---------------------------------  418 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA---------------------------------  418 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------------------------------
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------------------------------
Confidence            34455789999999999999875 79999999999999998752110                                 


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                             .......+.+|...|.+++|+|++ +|++|+.|++|+|||+.++.++..+. |...|.+++|+| ++++|++|
T Consensus       419 -------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~  490 (694)
T 3dm0_A          419 -------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSA  490 (694)
T ss_dssp             -------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred             -------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEE
Confidence                   012346788999999999999999 99999999999999999999888875 999999999999 99999999


Q ss_pred             ecCCeEEEEecCCCeEEEe----cccCCceEEEEEeeCC--CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~~----~~~~~~v~~v~~spdg--~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +.|++|++||+........    ..|...|.+++|+|++  ..+++|+.||.|++||+++.+....       ...|...
T Consensus       491 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-------~~~h~~~  563 (694)
T 3dm0_A          491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-------LAGHTGY  563 (694)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-------ECCCSSC
T ss_pred             eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-------EcCCCCC
Confidence            9999999999877655443    3577889999999987  5899999999999999987665322       2234588


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  522 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~  522 (667)
                      |++++|+|++ .+|++++.|+.|++||+.+........ +...+.+++|+|++.+|++++ |+.|+|||+.++.......
T Consensus       564 v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          564 VSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             EEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred             EEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence            9999999996 899999999999999998765554443 567899999999999888876 5669999999875432110


Q ss_pred             c--------------------cCccceeEEccCCcEEEEecCC
Q 005956          523 K--------------------NSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       523 ~--------------------~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      .                    ......+.|+|||.+|+++..+
T Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D  683 (694)
T 3dm0_A          641 VDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD  683 (694)
T ss_dssp             CCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence            0                    0113457899999998886544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.2e-32  Score=306.52  Aligned_cols=398  Identities=17%  Similarity=0.138  Sum_probs=273.8

Q ss_pred             ccceeecccccc-EEEEEEcC--CCCEEEEEECCCcEEEEEcCCC-------------------ceeeeeeCCCCCcccc
Q 005956          213 YTSQEIQAHKGC-IWTLKFSP--DGRYLASGGEDGVVRIWHVTSV-------------------AASCKSFTDDGGFGSN  270 (667)
Q Consensus       213 ~~~~~l~~H~~~-I~~v~fsp--dg~~Latgs~Dg~I~vWdv~~~-------------------~~~~~~~~~~~~~~~~  270 (667)
                      ...+.+.+|.+. |++++|+|  ++++||+|+.||.|+|||+.++                   ...++.|.+++..++.
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            355678899999 99999999  9999999999999999999633                   2233444555433322


Q ss_pred             CCC-----CeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEe
Q 005956          271 AKE-----GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCL  343 (667)
Q Consensus       271 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~  343 (667)
                      ...     +.+.+++                 ..+.+..+.+|...|.+++|+|++  .|++++.|+.|++||+.+++++
T Consensus       134 ~~~~~~~~~~v~~~d-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~  196 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD-----------------SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS  196 (615)
T ss_dssp             EECCSSCSEEEEETT-----------------TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE
T ss_pred             eccCCCCccEEEEEE-----------------CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee
Confidence            111     2333332                 234677888999999999999998  7999999999999999999999


Q ss_pred             EEee-CCC---cEEEEEEeeCC-CCEEEEEecCCeEEEEecCCCeEEEec-----ccCCceEEEEEeeCCCEEEEEecCC
Q 005956          344 NVFD-HHN---YVTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDWA-----DVRDVISAICYIPDGKGFIVGSITG  413 (667)
Q Consensus       344 ~~~~-h~~---~V~~l~f~p~d-~~~l~sgs~Dg~v~iwdl~~~~~~~~~-----~~~~~v~~v~~spdg~~l~~gs~dg  413 (667)
                      ..+. |..   .|++++|+| + +++|++++.|+.|++||+.+++.+...     .|...|.+++|+ ++++|++++.||
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  274 (615)
T 1pgu_A          197 ASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA  274 (615)
T ss_dssp             EEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred             eeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence            8886 777   899999999 7 999999999999999999999887655     788999999999 999999999999


Q ss_pred             cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCC----------
Q 005956          414 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS----------  483 (667)
Q Consensus       414 ~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~----------  483 (667)
                      .|++||+.+.+.... +..+  .......+.++.|. + +.++++++.|+.|++||+...........|.          
T Consensus       275 ~i~~wd~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~-~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  349 (615)
T 1pgu_A          275 TIRVWDVTTSKCVQK-WTLD--KQQLGNQQVGVVAT-G-NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP  349 (615)
T ss_dssp             EEEEEETTTTEEEEE-EECC--TTCGGGCEEEEEEE-E-TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT
T ss_pred             cEEEEECCCCcEEEE-EcCC--CCcccCceeEEEeC-C-CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecC
Confidence            999999987665432 2222  12233678888886 4 3799999999999999987433222222233          


Q ss_pred             -----------------------CCeEEEEEcCC----------------------------------------------
Q 005956          484 -----------------------GSQMSASFTTT----------------------------------------------  494 (667)
Q Consensus       484 -----------------------~~v~~v~~spd----------------------------------------------  494 (667)
                                             ..|.+++| ++                                              
T Consensus       350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  428 (615)
T 1pgu_A          350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD  428 (615)
T ss_dssp             TEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred             cEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence                                   33333333 22                                              


Q ss_pred             ---------------------------CCEEEEEeC-CCcEEEEEcCCCCc--cccccccCccceeEEccCCcEEEEecC
Q 005956          495 ---------------------------GKHIISIGD-DCRVYVWNYDELCF--PSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       495 ---------------------------g~~l~sgs~-Dg~I~iWd~~~~~~--~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                                                 +++|++++. |+.|++||+.++..  .........+.++.|+|+|.+|+++..
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  508 (615)
T 1pgu_A          429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV  508 (615)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence                                       344445555 55555555555433  122233455667899999999998765


Q ss_pred             CCCcccccccCCCCCCcCccCcCCCC-CCcccCCCcccC----------CCCCCCCCCCCCC-CCCCCCcCCCCCCcccC
Q 005956          545 GIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDSERFSL----------GSWFSNDGPCRGS-ATWPAEKLPLWDVTIDS  612 (667)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~fS~----------~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~  612 (667)
                      ...  ++++....... .   ..+.. +........|+|          ++.+++.+...|. ..|..+....   ... 
T Consensus       509 dg~--i~iw~~~~~~~-~---~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~-  578 (615)
T 1pgu_A          509 MGK--ILLYDLQSREV-K---TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK---IIK-  578 (615)
T ss_dssp             TSC--EEEEETTTTEE-E---ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC---CEE-
T ss_pred             CCe--EEEeeCCCCcc-e---eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce---ech-
Confidence            432  22222111100 0   11122 334556778999          8999998887776 4566543211   000 


Q ss_pred             CCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956          613 DGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  659 (667)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~  659 (667)
                                .++.|...   ......++.|. |||++.||.|++|.
T Consensus       579 ----------~~~~h~~~---v~~l~~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          579 ----------ALNAHKDG---VNNLLWETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             ----------ETTSSTTC---EEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             ----------hhhcCccc---eEEEEEcCCCC-eEEecCCceEEEEe
Confidence                      01111111   11244567888 99999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.9e-32  Score=282.10  Aligned_cols=247  Identities=21%  Similarity=0.279  Sum_probs=206.5

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ..+.+..|..+|.+++|+|++++|++|+.|++|+|||+.+                                        
T Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~----------------------------------------   86 (304)
T 2ynn_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT----------------------------------------   86 (304)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT----------------------------------------
T ss_pred             eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC----------------------------------------
Confidence            4567789999999999999999999999999999999986                                        


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-eEeEEe-eCCCcEEEEEEeeCCCCEEEEEec
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                           .+.+..+.+|...|.+++|+|++ +|++|+.|++|++||+.++ .+...+ .|...|.+++|+|.++.+|++|+.
T Consensus        87 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           87 -----GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             -----CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence                 34467788999999999999999 9999999999999999887 444555 499999999999966789999999


Q ss_pred             CCeEEEEecCCCeEEE--ecccCCceEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          371 DGKVRIWGVCEKRVVD--WADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      |++|++||+.+.....  ...+...+..++|+|  ++.+|++|+.||.|++||+++......   +    ..|...|+++
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~---~----~~h~~~v~~~  234 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT---L----EGHMSNVSFA  234 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE---E----ECCSSCEEEE
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee---e----CCCCCCEEEE
Confidence            9999999998765432  334567899999987  778999999999999999987765332   2    2345789999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCC
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~Dg~I~iWd~~~  514 (667)
                      +|+|++ .+|++++.|+.|++||..+.........+...+.+++|+|++.  +|++|+.|| +.+|++.+
T Consensus       235 ~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          235 VFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             EECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             EECCCC-CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence            999996 7999999999999999886554444445788999999999885  577777555 77888765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.2e-33  Score=302.76  Aligned_cols=281  Identities=14%  Similarity=0.171  Sum_probs=218.8

Q ss_pred             cceeeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          214 TSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      +.+...+|...|+||+|+| ++++||+|+.||.|+|||+.+...                                    
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~------------------------------------  154 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK------------------------------------  154 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC------------------------------------
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc------------------------------------
Confidence            3455678999999999999 567999999999999999975321                                    


Q ss_pred             CcccccCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~s  367 (667)
                             .....+.+|.+.|++|+|+| ++ +|++|+.|++|+|||+.++.......   +...+.+++|+| ++++|++
T Consensus       155 -------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  226 (435)
T 4e54_B          155 -------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVT  226 (435)
T ss_dssp             -------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEE
T ss_pred             -------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEE
Confidence                   22345678999999999998 45 99999999999999998776554443   344688999999 9999999


Q ss_pred             EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      |+.||.|++||+++..+..+..|...|++++|+|++. +|++|+.|+.|++||++..........    ...|...|+++
T Consensus       227 g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----~~~h~~~v~~~  302 (435)
T 4e54_B          227 GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----SLPHRHPVNAA  302 (435)
T ss_dssp             ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----CCBCSSCEEEC
T ss_pred             EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----eeeccccccce
Confidence            9999999999998877777888999999999999886 677899999999999987655432211    23456889999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCC------CCeEEEEEcCCCCEEEEEe------------CCCcEE
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS------GSQMSASFTTTGKHIISIG------------DDCRVY  508 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~------~~v~~v~~spdg~~l~sgs------------~Dg~I~  508 (667)
                      +|+|+| .+|++++.|+.|+|||+...........|.      ..+..+.|+|++.++++++            .++.|+
T Consensus       303 ~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~  381 (435)
T 4e54_B          303 CFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID  381 (435)
T ss_dssp             CBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred             eECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEE
Confidence            999996 899999999999999987543222221121      1234566777777777664            345799


Q ss_pred             EEEcCCCCcccc---ccccCccceeEEccCCcEEEEec
Q 005956          509 VWNYDELCFPSS---KQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       509 iWd~~~~~~~~~---~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      +||..+++....   .+...+.....|+|+|.+||.+.
T Consensus       382 iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          382 VFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             EECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred             EEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence            999999876433   23344455567999999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-33  Score=299.96  Aligned_cols=251  Identities=12%  Similarity=0.134  Sum_probs=195.1

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .++.|.++|++++|+|+|++||+|+.||.|+|||+.+...                                        
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------   45 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------   45 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------------------------
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------------------------
Confidence            3455788999999999999999999999999999985210                                        


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe---EeEE-eeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNV-FDHHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~---~~~~-~~h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                         ..+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++   .... ..|...|++++|+| ++++|++++.|
T Consensus        46 ---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  121 (377)
T 3dwl_C           46 ---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGA  121 (377)
T ss_dssp             ---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESS
T ss_pred             ---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecC
Confidence               3456678999999999999998 99999999999999999877   3333 35999999999999 99999999999


Q ss_pred             CeEEEEecCCCe----EEEecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-----------eEeeccc
Q 005956          372 GKVRIWGVCEKR----VVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-----------KVDFHDR  435 (667)
Q Consensus       372 g~v~iwdl~~~~----~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-----------~~~~~~~  435 (667)
                      +.|++||+.+++    ...+.. |...|++++|+|++++|++|+.||.|++||+........           .-.....
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (377)
T 3dwl_C          122 RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE  201 (377)
T ss_dssp             SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC
T ss_pred             CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc
Confidence            999999999876    334555 889999999999999999999999999999964331110           0011111


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee----eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      . .|...|++++|+|++ .+|++++.|+.|++||+.....    ......|...|.+++|+|++++|++++.++.+ +|+
T Consensus       202 ~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~  278 (377)
T 3dwl_C          202 Y-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ  278 (377)
T ss_dssp             C-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred             c-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence            2 566889999999996 7999999999999999875432    22233478899999999999999999866655 777


Q ss_pred             cCC
Q 005956          512 YDE  514 (667)
Q Consensus       512 ~~~  514 (667)
                      ...
T Consensus       279 ~~~  281 (377)
T 3dwl_C          279 GNE  281 (377)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-32  Score=292.97  Aligned_cols=300  Identities=15%  Similarity=0.234  Sum_probs=235.6

Q ss_pred             ccccccEEEEEEcCCCC-EEEEEECCCcEEEEEc----CCCc---------------------------eeeeeeCCCCC
Q 005956          219 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV----TSVA---------------------------ASCKSFTDDGG  266 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv----~~~~---------------------------~~~~~~~~~~~  266 (667)
                      ..|.+.|++++|+|+|+ +||+|+.||.|+||++    .++.                           ..++.|.+++.
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            35679999999999999 9999999999999999    6544                           22233333332


Q ss_pred             c-cccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE
Q 005956          267 F-GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN  344 (667)
Q Consensus       267 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~  344 (667)
                      . +....++.+.++                +.....+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+.
T Consensus       122 ~l~~~~~dg~i~i~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          122 SIVTGVENGELRLW----------------NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             EEEEEETTSCEEEE----------------ETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             EEEEEeCCCeEEEE----------------eCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            2 222233333333                23456678888999999999999999 99999999999999999999988


Q ss_pred             Eee-CCCc---------------EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEE
Q 005956          345 VFD-HHNY---------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFI  407 (667)
Q Consensus       345 ~~~-h~~~---------------V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~  407 (667)
                      .+. +...               +.++.|+| + ..+++++.++.|++||+.+++... +..+...|.+++|+|++++|+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            886 4444               89999998 4 578999999999999999877654 567889999999999999999


Q ss_pred             EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeE
Q 005956          408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM  487 (667)
Q Consensus       408 ~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~  487 (667)
                      +++.||.|++||+++......       ...+...|.+++|+|++  ++++++.|+.|++||+...........|...+.
T Consensus       264 ~~~~d~~i~i~d~~~~~~~~~-------~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~  334 (425)
T 1r5m_A          264 SASDDGTLRIWHGGNGNSQNC-------FYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF  334 (425)
T ss_dssp             EEETTSCEEEECSSSBSCSEE-------ECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             EEcCCCEEEEEECCCCccceE-------ecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence            999999999999987654332       12245789999999996  999999999999999886555555545788999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCC--------------------ccccc-cc-cC-ccceeEEccCCcEEEEecC
Q 005956          488 SASFTTTGKHIISIGDDCRVYVWNYDELC--------------------FPSSK-QK-NS-VRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       488 ~v~~spdg~~l~sgs~Dg~I~iWd~~~~~--------------------~~~~~-~~-~~-~~~~~~fs~dg~~lav~w~  544 (667)
                      +++|+|++++|++++.||.|++||+.++.                    ..... .. .. .+..+.|+|++.+|+++..
T Consensus       335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  414 (425)
T 1r5m_A          335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS  414 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence            99999999999999999999999998765                    22222 22 22 6677899999998887654


Q ss_pred             C
Q 005956          545 G  545 (667)
Q Consensus       545 ~  545 (667)
                      .
T Consensus       415 d  415 (425)
T 1r5m_A          415 L  415 (425)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.2e-32  Score=279.13  Aligned_cols=249  Identities=25%  Similarity=0.391  Sum_probs=209.1

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ..+.+.+|...|++++|+|++++|++|+.||.|+|||+.+                                        
T Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~----------------------------------------   96 (312)
T 4ery_A           57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS----------------------------------------   96 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------------------
T ss_pred             cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC----------------------------------------
Confidence            3456789999999999999999999999999999999986                                        


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                           .+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++++.|
T Consensus        97 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  170 (312)
T 4ery_A           97 -----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYD  170 (312)
T ss_dssp             -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             -----CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCC
Confidence                 24467788999999999999998 99999999999999999999888885 888999999999 99999999999


Q ss_pred             CeEEEEecCCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          372 GKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      +.|++||+.+++.+..  ..+...+..++|+|++++|++++.||.|++||+++.+....   +.++..  ........++
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~--~~~~~~~~~~  245 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT---YTGHKN--EKYCIFANFS  245 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE---ECSSCC--SSSCCCEEEE
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---EEecCC--ceEEEEEEEE
Confidence            9999999999886643  34566799999999999999999999999999987764332   111111  1122233455


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 005956          450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYD  513 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~  513 (667)
                      +.++.+|++++.||.|++||+...........|...|.+++|+|++++|++++  .|+.|++|+.+
T Consensus       246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            44458999999999999999886554445555889999999999999999997  69999999865

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5e-32  Score=282.28  Aligned_cols=257  Identities=18%  Similarity=0.266  Sum_probs=212.0

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      +.+.+.+|.+.|++|+|+|++++||+|+.||.|+|||+.+....                                    
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------------------   46 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN------------------------------------   46 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC------------------------------------
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc------------------------------------
Confidence            45667899999999999999999999999999999999852110                                    


Q ss_pred             cccccCCcceeeeccccceEEEEecC--CC-eEEEEeCCCcEEEEecCCC---------eEeEEe-eCCCcEEEEEEeeC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN---------QCLNVF-DHHNYVTCVQFNPI  360 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~--~~-~l~s~s~Dg~I~iWd~~~~---------~~~~~~-~h~~~V~~l~f~p~  360 (667)
                           ......+.+|...|.+++|+|  ++ +|++++.|++|++||+.++         +++..+ .|...|.+++|+| 
T Consensus        47 -----~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  120 (351)
T 3f3f_A           47 -----WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-  120 (351)
T ss_dssp             -----EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-
T ss_pred             -----ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-
Confidence                 123567789999999999999  46 9999999999999999886         445555 4899999999999 


Q ss_pred             C--CCEEEEEecCCeEEEEecCCCeEEE--------------ecccCCceEEEEEeeC---CCEEEEEecCCcEEEEEec
Q 005956          361 D--DNYFISGSIDGKVRIWGVCEKRVVD--------------WADVRDVISAICYIPD---GKGFIVGSITGTCHFYKAS  421 (667)
Q Consensus       361 d--~~~l~sgs~Dg~v~iwdl~~~~~~~--------------~~~~~~~v~~v~~spd---g~~l~~gs~dg~i~l~d~~  421 (667)
                      +  +++|++++.|+.|++||+.+++.+.              ...+...+.+++|+|+   +..+++++.++.+.+|+..
T Consensus       121 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~  200 (351)
T 3f3f_A          121 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK  200 (351)
T ss_dssp             GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT
T ss_pred             CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC
Confidence            7  9999999999999999998865331              1246678999999997   9999999999999888877


Q ss_pred             CCcceeeeEeeccccCcCCCCeEEEEEccCCC---eEEEEEeCCCcEEEEECCcc-------------------------
Q 005956          422 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVDV-------------------------  473 (667)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~---~~l~~~s~dg~I~iwd~~~~-------------------------  473 (667)
                      ....... ..    ...|...|++++|+|++.   .+|++++.||.|++||+...                         
T Consensus       201 ~~~~~~~-~~----~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
T 3f3f_A          201 DGKLHVA-AK----LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD  275 (351)
T ss_dssp             TSCEEEE-EE----CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------
T ss_pred             CCceeee-ee----cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccc
Confidence            6554222 11    233568999999999963   79999999999999997642                         


Q ss_pred             ---------------------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          474 ---------------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       474 ---------------------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                                           ........|...|.+++|+|++++|++++.||.|+||++.++..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          276 AQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             ---------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             cccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence                                 22233345888999999999999999999999999999998653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.1e-32  Score=332.69  Aligned_cols=399  Identities=19%  Similarity=0.244  Sum_probs=285.7

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcee------------------------eeeeCCCCCcc
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS------------------------CKSFTDDGGFG  268 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~------------------------~~~~~~~~~~~  268 (667)
                      .....+.+|.+.|++++|+|++++|++|+.||.|++||+.++...                        ++.+++++..+
T Consensus       734 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  813 (1249)
T 3sfz_A          734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI  813 (1249)
T ss_dssp             SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred             chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence            345677899999999999999999999999999999999865322                        22334444333


Q ss_pred             ccCCCCeEEecccCCCCceeecCCCcccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe
Q 005956          269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF  346 (667)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~  346 (667)
                      .....+.+.+++...               ...+..+ .+|...|.+++|+|++ .+++++.|++|++||+.++..+..+
T Consensus       814 ~~~~~~~v~~~d~~~---------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~  878 (1249)
T 3sfz_A          814 IVAAKNKVLLFDIHT---------------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC  878 (1249)
T ss_dssp             EEEETTEEEEEETTT---------------CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             EEEcCCcEEEEEecC---------------CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence            333333343333221               1223333 3899999999999999 9999999999999999999988887


Q ss_pred             e-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC--------------------------------------------
Q 005956          347 D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--------------------------------------------  381 (667)
Q Consensus       347 ~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~--------------------------------------------  381 (667)
                      . |...|++++|+| ++++|++++.|+.|++||+.+                                            
T Consensus       879 ~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1249)
T 3sfz_A          879 RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID  957 (1249)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred             CCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence            5 889999999999 999999999999999998542                                            


Q ss_pred             -----------------------------------CeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956          382 -----------------------------------KRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (667)
Q Consensus       382 -----------------------------------~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~  425 (667)
                                                         ++. .....|...|++++|+|+|+++++++.||.|++||+.++..
T Consensus       958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A          958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp             EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred             EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence                                               111 11234667789999999999999999999999999987654


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      ..        ...+...|.++.|+|++  .+++++.|+.|++||+.+.........|...|.+++|+|++++|++++.||
T Consensus      1038 ~~--------~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A         1038 VF--------LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK 1107 (1249)
T ss_dssp             EC--------CBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSS
T ss_pred             EE--------EecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCC
Confidence            32        22345889999999975  789999999999999875443333334888999999999999999999999


Q ss_pred             cEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecCCCCcccccccCCC--CCCcCccCc---CCCCCCcccCCCc
Q 005956          506 RVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS--LRDCSQKWD---NLETAPWIRDSER  579 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~--~~~~~~~w~---~~~~~~~~~~~~~  579 (667)
                      .|++||+.++...... .....+.++.|+|||.++|++..+..  ++++....  .......+.   ....+...+....
T Consensus      1108 ~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 1185 (1249)
T 3sfz_A         1108 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE--IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVC 1185 (1249)
T ss_dssp             CCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC--CCEEESSSSCCCCCCCCCC-------CCSCCCEEE
T ss_pred             cEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE--EEEEECCCCceEEEeccccccccccccCceEEEEE
Confidence            9999999988764443 34456778899999999999765433  23322211  111110000   0122333456778


Q ss_pred             ccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeee
Q 005956          580 FSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTF  658 (667)
Q Consensus       580 fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f  658 (667)
                      |||++.+++.++  |. ..|.......... .      .        .+.   ........++.|..||+++.||.|++|
T Consensus      1186 fs~dg~~l~s~~--g~v~vwd~~~g~~~~~-~------~--------~~~---~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A         1186 FSPDSKTLVSAG--GYLKWWNVATGDSSQT-F------Y--------TNG---TNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp             ECTTSSCEEEES--SSEEEBCSSSCBCCCC-C------C--------CSS---CCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred             ECCCCCEEEECC--CeEEEEECCCCceeee-e------e--------ccC---CcccEEEECCCCCEEEEecCCcEEEEE
Confidence            999999998775  43 4566443211100 0      0        000   000124456788889999999999999


Q ss_pred             e
Q 005956          659 H  659 (667)
Q Consensus       659 ~  659 (667)
                      +
T Consensus      1246 ~ 1246 (1249)
T 3sfz_A         1246 Q 1246 (1249)
T ss_dssp             C
T ss_pred             e
Confidence            7

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=325.91  Aligned_cols=191  Identities=13%  Similarity=0.108  Sum_probs=153.2

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc----------eeeeeeCCCCC-ccccCCCCeEEecccCCCCc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA----------ASCKSFTDDGG-FGSNAKEGKIKFGKKKSSHV  286 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  286 (667)
                      ..+|.+.|++++|+|++++||+|+.||+|+||+..+..          +..+.|.+ +. +++...++.+.+|+...   
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~---   88 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS---   88 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT---
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC---
Confidence            34899999999999999999999999999999987543          33455555 33 44555666666665443   


Q ss_pred             eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE------------eeCCCcEE
Q 005956          287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV------------FDHHNYVT  353 (667)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~------------~~h~~~V~  353 (667)
                                  .+.+..+. |...|++++|+|++ +|++|+.||+|++||+.++++...            ..|...|+
T Consensus        89 ------------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~  155 (902)
T 2oaj_A           89 ------------QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV  155 (902)
T ss_dssp             ------------CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred             ------------CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence                        23345554 66889999999999 999999999999999998876411            13788999


Q ss_pred             EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-c------------------CCceEEEEEeeCCCEEEEEecCCc
Q 005956          354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-V------------------RDVISAICYIPDGKGFIVGSITGT  414 (667)
Q Consensus       354 ~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-~------------------~~~v~~v~~spdg~~l~~gs~dg~  414 (667)
                      +++|+|.++..+++|+.|+.| +||+++++...... +                  ...|++++|+|+|++|++|+.||.
T Consensus       156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~  234 (902)
T 2oaj_A          156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS  234 (902)
T ss_dssp             EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence            999999446799999999999 99999988765332 2                  367999999999999999999999


Q ss_pred             EEEEEecCCcce
Q 005956          415 CHFYKASGNDLK  426 (667)
Q Consensus       415 i~l~d~~~~~~~  426 (667)
                      |++||+++++..
T Consensus       235 i~lWd~~~g~~~  246 (902)
T 2oaj_A          235 LVFWDANSGHMI  246 (902)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEECCCCcEE
Confidence            999999876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.4e-32  Score=294.31  Aligned_cols=288  Identities=16%  Similarity=0.257  Sum_probs=215.8

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .|.+.|++++|+|+|++||+|+.||.|+||++.+.......           .                       ....
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-----------~-----------------------~~~~   71 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-----------S-----------------------RGEY   71 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-----------C-----------------------CCCE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-----------c-----------------------ccce
Confidence            47899999999999999999999999999999863211000           0                       0011


Q ss_pred             Ccceeeeccc------------cceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEe---------------------
Q 005956          300 SPLQELHGHK------------GDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL---------------------  343 (667)
Q Consensus       300 ~~~~~l~gh~------------~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~---------------------  343 (667)
                      +....+.+|.            ..|.+++|+|++   .|++++.|++|++||+.++...                     
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  151 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT  151 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence            2356778898            889999999985   8999999999999999765432                     


Q ss_pred             ------------------EEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-CeEEE--------ecccCCce
Q 005956          344 ------------------NVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD--------WADVRDVI  394 (667)
Q Consensus       344 ------------------~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~~~~--------~~~~~~~v  394 (667)
                                        ..+  .|...|++++|+| ++++|++| .|+.|++||+.. ++...        ...|...|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  229 (447)
T 3dw8_B          152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVI  229 (447)
T ss_dssp             CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCE
T ss_pred             eEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcce
Confidence                              122  4899999999999 99999998 799999999994 44443        45788899


Q ss_pred             EEEEEeeCC-CEEEEEecCCcEEEEEecCCcceee-eEeecccc--------CcCCCCeEEEEEccCCCeEEEEEeCCCc
Q 005956          395 SAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRK--------KTSGNKITGIQFSRDESQRIMITSEDSK  464 (667)
Q Consensus       395 ~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~--------~~~~~~I~~l~~sp~g~~~l~~~s~dg~  464 (667)
                      ++++|+|++ +.|++|+.||.|++||+++...... ...+..+.        ..+...|++++|+|+| .+|++++. +.
T Consensus       230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~  307 (447)
T 3dw8_B          230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LS  307 (447)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SE
T ss_pred             EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-Ce
Confidence            999999998 9999999999999999998765211 11112111        0112389999999996 78888888 99


Q ss_pred             EEEEECCc---ceeeEEeCCCCC-------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-------
Q 005956          465 LRILDGVD---VIHKFKGLPKSG-------------SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-------  521 (667)
Q Consensus       465 I~iwd~~~---~~~~~~~~~~~~-------------~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-------  521 (667)
                      |++||+..   ....+..+....             .+..++|+|++++|++|+.||.|+|||+.+++.....       
T Consensus       308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~  387 (447)
T 3dw8_B          308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNK  387 (447)
T ss_dssp             EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCC
T ss_pred             EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccc
Confidence            99999864   445555431111             1334999999999999999999999999987653211       


Q ss_pred             --------------------------cccCccceeEEccCCcEEEEecCC
Q 005956          522 --------------------------QKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       522 --------------------------~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                                                .....+..++|+|++.+||++...
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~  437 (447)
T 3dw8_B          388 PRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN  437 (447)
T ss_dssp             TTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred             cccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence                                      111223457889999888887554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-31  Score=282.83  Aligned_cols=252  Identities=17%  Similarity=0.269  Sum_probs=207.3

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .+..|.++|++++|+|++++||+|+.||.|+|||+.+...                                        
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------   42 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------   42 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE----------------------------------------
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE----------------------------------------
Confidence            3456999999999999999999999999999999985210                                        


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                         ..+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+   .|...|.+++|+| ++++|++++.|+
T Consensus        43 ---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  118 (372)
T 1k8k_C           43 ---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSR  118 (372)
T ss_dssp             ---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             ---EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCC
Confidence               1467788999999999999999 9999999999999999988765543   4888999999999 999999999999


Q ss_pred             eEEEEecCCCe----EEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-----------eEeecccc
Q 005956          373 KVRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-----------KVDFHDRK  436 (667)
Q Consensus       373 ~v~iwdl~~~~----~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-----------~~~~~~~~  436 (667)
                      .|++||+..+.    ... ...|...|.+++|+|++++|++++.||.|++||++.......           ........
T Consensus       119 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          119 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            99999998876    222 356788999999999999999999999999999753211000           00000012


Q ss_pred             CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      ..|...|++++|+|++ .+|++++.|+.|++||+...........|...+.+++|+|++++|++| .|+.|++|++.+
T Consensus       199 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            2456789999999996 799999999999999987544443444478899999999999988888 899999999987

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=281.85  Aligned_cols=282  Identities=19%  Similarity=0.295  Sum_probs=227.3

Q ss_pred             cccceeeccccccEEEEEEcCC---CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  288 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspd---g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (667)
                      ....+.+++|.+.|++|+|+|+   |++||+|+.||.|+|||+.+..                                 
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~---------------------------------   75 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG---------------------------------   75 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS---------------------------------
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC---------------------------------
Confidence            3445678899999999999999   6999999999999999998511                                 


Q ss_pred             ecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEE--eeCCCCEE
Q 005956          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDDNYF  365 (667)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f--~p~d~~~l  365 (667)
                                ......+.+|...|.+++|+|++ +|++++.|++|++||+.+++++....|...|++++|  +| ++++|
T Consensus        76 ----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l  144 (368)
T 3mmy_A           76 ----------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSCV  144 (368)
T ss_dssp             ----------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEEE
T ss_pred             ----------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCEE
Confidence                      11236678899999999999999 999999999999999999999998899999999999  77 88899


Q ss_pred             EEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          366 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      ++++.|+.|++||+++++.+........+.++.+.  +..+++++.++.+.+|+++..........     ......+.+
T Consensus       145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~  217 (368)
T 3mmy_A          145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIE-----SPLKHQHRC  217 (368)
T ss_dssp             EEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECC-----CSCSSCEEE
T ss_pred             EEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcc-----ccccCCCce
Confidence            99999999999999998877666666666666655  46899999999999999987655433221     112345566


Q ss_pred             EEEccCC---CeEEEEEeCCCcEEEEECCcc-----eeeEEeCCCCC------------CeEEEEEcCCCCEEEEEeCCC
Q 005956          446 IQFSRDE---SQRIMITSEDSKLRILDGVDV-----IHKFKGLPKSG------------SQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       446 l~~sp~g---~~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~------------~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      +.+.++.   ...+++++.|+.|++||+...     ...+..  |..            .|.+++|+|++++|++++.||
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg  295 (368)
T 3mmy_A          218 VAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG  295 (368)
T ss_dssp             EEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred             EEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence            6665542   123999999999999998743     334443  333            799999999999999999999


Q ss_pred             cEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecCCC
Q 005956          506 RVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .|+|||+.+++..... .....+..+.|+|+|.+||++...+
T Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          296 RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            9999999988764443 3355677789999999999987654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=282.08  Aligned_cols=285  Identities=11%  Similarity=0.177  Sum_probs=220.3

Q ss_pred             ceeeccccccEEEEEEcCCCCEE-EEEEC---CCcEEEEEcCCCce------------eeeeeCCC---C-CccccCCCC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYL-ASGGE---DGVVRIWHVTSVAA------------SCKSFTDD---G-GFGSNAKEG  274 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~L-atgs~---Dg~I~vWdv~~~~~------------~~~~~~~~---~-~~~~~~~~~  274 (667)
                      .+.+++|.+.|++++|+|++..| ++|+.   ||.|+|||+.++..            .++.|.++   + .++....++
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            34567899999999999999655 55655   99999999987543            33444554   2 233344455


Q ss_pred             eEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEE------ecCCC-eEEEEeCCCcEEEEecCCCe-EeEEe
Q 005956          275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA------WSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVF  346 (667)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~------~s~~~-~l~s~s~Dg~I~iWd~~~~~-~~~~~  346 (667)
                      .+.+++....              ..++..+.+|...|.++.      |+|++ +|++++.|++|++||+.+++ .+..+
T Consensus        91 ~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  156 (357)
T 3i2n_A           91 NLHIWNLEAP--------------EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM  156 (357)
T ss_dssp             CEEEECTTSC--------------SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred             eEEEEeCCCC--------------CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence            5555544321              125778889999999995      56778 99999999999999999886 66666


Q ss_pred             e-C----CCcEEEEE----EeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEee---CCCEEEEEecCCc
Q 005956          347 D-H----HNYVTCVQ----FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSITGT  414 (667)
Q Consensus       347 ~-h----~~~V~~l~----f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp---dg~~l~~gs~dg~  414 (667)
                      . |    ...|++++    |+| ++++|++++.|+.|++||+++++......+...|.+++|+|   +++.+++|+.||.
T Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  235 (357)
T 3i2n_A          157 EPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK  235 (357)
T ss_dssp             CCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred             cccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence            4 3    33899998    677 99999999999999999999999888888899999999999   9999999999999


Q ss_pred             EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-------------------ee
Q 005956          415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------------------IH  475 (667)
Q Consensus       415 i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-------------------~~  475 (667)
                      |++||+++...... +... ....|...|++++|+|++..++++++.||.|++||+...                   ..
T Consensus       236 i~i~d~~~~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~  313 (357)
T 3i2n_A          236 FHVFDMRTQHPTKG-FASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSL  313 (357)
T ss_dssp             EEEEEEEEEETTTE-EEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEE
T ss_pred             EEEEeCcCCCcccc-eeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccce
Confidence            99999987654332 1110 112356899999999997448999999999999997521                   12


Q ss_pred             eEEeCCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCC
Q 005956          476 KFKGLPKSGSQMSASFTTTGKHII-SIGDDCRVYVWNYDELC  516 (667)
Q Consensus       476 ~~~~~~~~~~v~~v~~spdg~~l~-sgs~Dg~I~iWd~~~~~  516 (667)
                      ......|...|.+++|+|++++|+ +++.||.|+|||+.+..
T Consensus       314 ~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          314 LQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            223334889999999999999998 89999999999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-31  Score=286.40  Aligned_cols=275  Identities=13%  Similarity=0.175  Sum_probs=220.7

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ..+.+.+|.+.|++++|+|  ++||+|+.||.|+||++.+....                                    
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~------------------------------------   49 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE------------------------------------   49 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC------------------------------------
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc------------------------------------
Confidence            4567889999999999999  79999999999999999863210                                    


Q ss_pred             cccccCCcceeeeccccceEEEEecCC----C----eEEEEeCCCcEEEEecCCCeE-----eEEee-C-----CCcEEE
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNS----N----YLLSCSMDKTVRMWQVGCNQC-----LNVFD-H-----HNYVTC  354 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~----~----~l~s~s~Dg~I~iWd~~~~~~-----~~~~~-h-----~~~V~~  354 (667)
                         .....+..+.+|...|.+++|+|+    +    +|++++.|+.|++||+.+++.     +..+. |     ...|.+
T Consensus        50 ---~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  126 (397)
T 1sq9_A           50 ---NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA  126 (397)
T ss_dssp             ---CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEE
T ss_pred             ---cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEE
Confidence               011346778899999999999998    5    888999999999999998875     56654 6     489999


Q ss_pred             EEEe----eCCCCE-EEEEecCCeEEEEecCC------CeEE------Ee-------cccCCceEEEEEeeCCCEEEEEe
Q 005956          355 VQFN----PIDDNY-FISGSIDGKVRIWGVCE------KRVV------DW-------ADVRDVISAICYIPDGKGFIVGS  410 (667)
Q Consensus       355 l~f~----p~d~~~-l~sgs~Dg~v~iwdl~~------~~~~------~~-------~~~~~~v~~v~~spdg~~l~~gs  410 (667)
                      ++|+    | ++++ |++++.|+.|++||+.+      ++.+      .+       ..+...|.+++|+|++ .+++++
T Consensus       127 ~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~  204 (397)
T 1sq9_A          127 LKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF  204 (397)
T ss_dssp             EEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC
T ss_pred             EEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe
Confidence            9999    8 8999 99999999999999988      4432      33       3467889999999999 999999


Q ss_pred             cCCcEEEEEecCCcceeeeEeeccccCcC---CCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCcceeeEEeCC---
Q 005956          411 ITGTCHFYKASGNDLKLEKVDFHDRKKTS---GNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLP---  481 (667)
Q Consensus       411 ~dg~i~l~d~~~~~~~~~~~~~~~~~~~~---~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~---  481 (667)
                      .+|.|++||+++.+.... +..   ...|   ...|++++|+|++ .+|++++.|   +.|++||+...........   
T Consensus       205 ~dg~i~i~d~~~~~~~~~-~~~---~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~  279 (397)
T 1sq9_A          205 NNGTVQISELSTLRPLYN-FES---QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH  279 (397)
T ss_dssp             TTSEEEEEETTTTEEEEE-EEC---CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred             CCCcEEEEECCCCceeEE-Eec---cccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence            999999999987654332 221   0113   5789999999995 899999999   9999999876544444444   


Q ss_pred             ----------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-------c---------------cCccce
Q 005956          482 ----------KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-------K---------------NSVRSC  529 (667)
Q Consensus       482 ----------~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-------~---------------~~~~~~  529 (667)
                                |...|.+++|+|++++|++++.||.|+|||+.+++......       .               ...+..
T Consensus       280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~  359 (397)
T 1sq9_A          280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD  359 (397)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred             cccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeE
Confidence                      78899999999999999999999999999999886543332       2               455667


Q ss_pred             eEEccCC
Q 005956          530 EHFFSEG  536 (667)
Q Consensus       530 ~~fs~dg  536 (667)
                      +.|+|+|
T Consensus       360 ~~~~~~g  366 (397)
T 1sq9_A          360 VKFLKKG  366 (397)
T ss_dssp             EEEECTT
T ss_pred             EEecccc
Confidence            7899988

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-32  Score=291.50  Aligned_cols=252  Identities=10%  Similarity=0.182  Sum_probs=209.5

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .|.+.|++++|+|++++||+|+.||.|+||++.+...                                         ..
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------------------------~~  103 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------------------------AI  103 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------------------------CC
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------------------------cc
Confidence            5899999999999999999999999999999975210                                         01


Q ss_pred             CcceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCCCe------EeEEe----eCCCcEEEEEEeeCCCCEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ------CLNVF----DHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~------~~~~~----~h~~~V~~l~f~p~d~~~l~s  367 (667)
                      ..+..+.+|...|.+++|+|+ + +|++++.|++|++||+.+++      ....+    .|...|.+++|+|..+.+|++
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence            346777899999999999998 5 99999999999999999876      33332    488899999999933899999


Q ss_pred             EecCCeEEEEecCCCeEEEecc-c------CCceEEEEEeeCC-CEEEEEecCC---cEEEEEecCCcceeeeEeecccc
Q 005956          368 GSIDGKVRIWGVCEKRVVDWAD-V------RDVISAICYIPDG-KGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRK  436 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~-~------~~~v~~v~~spdg-~~l~~gs~dg---~i~l~d~~~~~~~~~~~~~~~~~  436 (667)
                      ++.|+.|++||+.+++.+.... +      ...|.+++|+|++ .++++++.++   .|++||+++.......+.     
T Consensus       184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-----  258 (416)
T 2pm9_A          184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-----  258 (416)
T ss_dssp             ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-----
T ss_pred             EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-----
Confidence            9999999999999988765333 3      6789999999997 6899999998   999999997643322111     


Q ss_pred             CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC
Q 005956          437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ..|...|++++|+|+++.+|++++.|+.|++||+.+.........|...|.+++|+|++ .+|++++.|+.|+||++.+.
T Consensus       259 ~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            13458899999999335899999999999999988654444444588899999999999 89999999999999999887


Q ss_pred             Cc
Q 005956          516 CF  517 (667)
Q Consensus       516 ~~  517 (667)
                      ..
T Consensus       339 ~~  340 (416)
T 2pm9_A          339 TN  340 (416)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1e-31  Score=289.86  Aligned_cols=273  Identities=15%  Similarity=0.158  Sum_probs=217.3

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      +.+..| ..+....|+|++++||+|+.||.|+|||+.+.                                         
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------------------------  129 (420)
T 3vl1_A           92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN-----------------------------------------  129 (420)
T ss_dssp             TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC-----------------------------------------
T ss_pred             eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc-----------------------------------------
Confidence            344455 45566688999999999999999999998752                                         


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                          .....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.|++
T Consensus       130 ----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~  204 (420)
T 3vl1_A          130 ----LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGT  204 (420)
T ss_dssp             ----EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred             ----ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence                3345567899999999999999 99999999999999999999888876 999999999999 9999999999999


Q ss_pred             EEEEecCCCeEEEecc----cCCceEE---------------------EEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          374 VRIWGVCEKRVVDWAD----VRDVISA---------------------ICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       374 v~iwdl~~~~~~~~~~----~~~~v~~---------------------v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      |++||+++++.+....    +...+.+                     ++|+|+|++|++|+.||.|++||+++......
T Consensus       205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ  284 (420)
T ss_dssp             EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence            9999999988765332    3334444                     45578899999999999999999988765433


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      .      ...+...|++++|+|++..+|++++.||.|++||+...   ...+..+ +...+.++.+ +++++|++++.|+
T Consensus       285 ~------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~  356 (420)
T 3vl1_A          285 L------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF-AAGALFVSSGFDT  356 (420)
T ss_dssp             E------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-ETTEEEEEETTTE
T ss_pred             c------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-CCCCEEEEecCCc
Confidence            2      12345789999999997559999999999999998753   4455553 5677777755 5788999999999


Q ss_pred             cEEEEEcCCCCccc----------cccccCccceeEEccCCc----EEEEec
Q 005956          506 RVYVWNYDELCFPS----------SKQKNSVRSCEHFFSEGV----SVAVQW  543 (667)
Q Consensus       506 ~I~iWd~~~~~~~~----------~~~~~~~~~~~~fs~dg~----~lav~w  543 (667)
                      .|++|++.....+.          ..........++|+|++.    ++|++.
T Consensus       357 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          357 SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred             cEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence            99999998743221          122334456678999888    566543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.4e-31  Score=280.84  Aligned_cols=203  Identities=10%  Similarity=0.028  Sum_probs=166.7

Q ss_pred             ccccceEEEEecCCC-eEE--EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956          307 GHKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~--s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~  383 (667)
                      .+...+.+++|+||| +|+  +++.|++|+|||+.+++++..+.|...|.+++|+| +++++++++.+ .+++|+..+++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence            455678999999999 655  44579999999999999999999999999999999 99999999855 46666666655


Q ss_pred             EE-E--ecccCCceEEEEEeeCCCEEEEEecCC----cEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          384 VV-D--WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       384 ~~-~--~~~~~~~v~~v~~spdg~~l~~gs~dg----~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      .. .  ...+...|.+++|+|+|+.+++++.++    .+++|++........ ...+    ..+...|++++|+|+| ++
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~V~~~~~Spdg-~~  283 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV----TNRFKGITSMDVDMKG-EL  283 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE----ESSCSCEEEEEECTTS-CE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeee----cCCCCCeEeEEECCCC-Cc
Confidence            43 2  345777899999999999999999887    688899887654433 2222    2345789999999996 89


Q ss_pred             EEEEeCCCcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          456 IMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      |++++.|+.|+|||+.+....... ..|...|++++|+|||++||+||.|++|+||++....
T Consensus       284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            999999999999999876554443 4589999999999999999999999999999997543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-30  Score=268.16  Aligned_cols=271  Identities=15%  Similarity=0.189  Sum_probs=221.1

Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      ...+.+++.+|.+.|++++| |++++||+|+.||.|+|||+.+.                                    
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~------------------------------------   49 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ------------------------------------   49 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS------------------------------------
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC------------------------------------
Confidence            44567789999999999999 99999999999999999999752                                    


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC---eEeEEe-eCCCcEEEEEEeeCCCCEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~---~~~~~~-~h~~~V~~l~f~p~d~~~l  365 (667)
                               .....+..|...|.+++|+|++ +|++++.|+.|++|++...   +.+..+ .|...|.++.|   +++++
T Consensus        50 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~l  117 (313)
T 3odt_A           50 ---------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF---QDGVV  117 (313)
T ss_dssp             ---------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE---ETTEE
T ss_pred             ---------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe---cCCEE
Confidence                     3356677899999999999999 9999999999999998754   444444 48999999999   46799


Q ss_pred             EEEecCCeEEEEecCCCeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          366 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      ++++.|+.|++|| ..........+...+.+++|.| +++.+++++.||.|++||..  ... ..+     ...+...|.
T Consensus       118 ~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~-~~~-----~~~~~~~i~  188 (313)
T 3odt_A          118 ISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVI-KTF-----SGIHNDVVR  188 (313)
T ss_dssp             EEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEE-EEE-----CSSCSSCEE
T ss_pred             EEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceE-EEE-----eccCcccEE
Confidence            9999999999999 3334445677899999999999 99999999999999999932  111 111     112458899


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cc
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QK  523 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~  523 (667)
                      +++|+|++ . +++++.|+.|++||+...........|...|.+++|+|++ .|++++.||.|++||+.+++..... ..
T Consensus       189 ~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~  265 (313)
T 3odt_A          189 HLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP  265 (313)
T ss_dssp             EEEEEETT-E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred             EEEEcCCC-e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence            99999996 4 9999999999999988554444444588999999999999 6889999999999999988764443 33


Q ss_pred             cCccceeEEccCCcEEEEe
Q 005956          524 NSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       524 ~~~~~~~~fs~dg~~lav~  542 (667)
                      ......+.|+|++.+++.+
T Consensus       266 ~~~i~~~~~~~~~~~~~~~  284 (313)
T 3odt_A          266 AISIWSVDCMSNGDIIVGS  284 (313)
T ss_dssp             SSCEEEEEECTTSCEEEEE
T ss_pred             CceEEEEEEccCCCEEEEe
Confidence            4456678999999866543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.4e-30  Score=285.31  Aligned_cols=272  Identities=18%  Similarity=0.338  Sum_probs=229.5

Q ss_pred             ccceeeccccccE-EEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          213 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       213 ~~~~~l~~H~~~I-~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ...+.+.+|.+.| .++.|  ++++|++|+.||+|++||+.+                                      
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~--------------------------------------  151 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--------------------------------------  151 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT--------------------------------------
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC--------------------------------------
Confidence            3456889999885 66666  567999999999999999986                                      


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEee-CCCCEEEEEe
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP-IDDNYFISGS  369 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p-~d~~~l~sgs  369 (667)
                             .+.+..+.+|.+.|.+++|++++.|++|+.||+|++||+.+++++..+. |...|.+++|++ .+++++++|+
T Consensus       152 -------~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s  224 (464)
T 3v7d_B          152 -------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS  224 (464)
T ss_dssp             -------TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEE
T ss_pred             -------CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEc
Confidence                   2446778899999999999999999999999999999999999998886 999999999995 2678999999


Q ss_pred             cCCeEEEEecCCCeE------------------------EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956          370 IDGKVRIWGVCEKRV------------------------VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  425 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~------------------------~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~  425 (667)
                      .|++|++||+.++..                        .....|...+.++  +++++++++|+.||.|++||+++.+.
T Consensus       225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~  302 (464)
T 3v7d_B          225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC  302 (464)
T ss_dssp             TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            999999999987652                        2345566667665  68899999999999999999987655


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      ...       ...|...|++++|+|++ .++++++.|+.|++||+.+.........|...|.+++|+  +++|++++.||
T Consensus       303 ~~~-------~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg  372 (464)
T 3v7d_B          303 LYI-------LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADG  372 (464)
T ss_dssp             EEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             EEE-------ecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence            332       12345889999999996 799999999999999998665555555689999999997  58999999999


Q ss_pred             cEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956          506 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      .|++||+.++......+.........|++++.+++++.
T Consensus       373 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          373 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred             cEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec
Confidence            99999999987666666666777789999999999876

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.3e-31  Score=278.42  Aligned_cols=276  Identities=13%  Similarity=0.090  Sum_probs=223.4

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      ...+|.+.|++++|+|++++|++|+.||.|+||++.+...                                        
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----------------------------------------   45 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------------------------------------   45 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------------------------------------
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----------------------------------------
Confidence            3468999999999999999999999999999999986321                                        


Q ss_pred             ccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEec-CCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQV-GCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~-~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                        ..+...+.+|...|.+++|+|++  +|++++.|+.|++||+ .+++......  |...|.+++|+|  +++|++++.|
T Consensus        46 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d  121 (342)
T 1yfq_A           46 --NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWD  121 (342)
T ss_dssp             --EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETT
T ss_pred             --cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC--CCEEEEEcCC
Confidence              01234556899999999999877  5899999999999999 8888766667  999999999998  8899999999


Q ss_pred             CeEEEEecCC---------CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC-CcceeeeEeeccccCcCCC
Q 005956          372 GKVRIWGVCE---------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       372 g~v~iwdl~~---------~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~-~~~~~~~~~~~~~~~~~~~  441 (667)
                      +.|++||+++         ++.+....+...|.+++|+|++  +++++.+|.|++||+++ .........     ..+..
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~  194 (342)
T 1yfq_A          122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-----SGLKY  194 (342)
T ss_dssp             SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE-----CSCSS
T ss_pred             CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee-----cCCCC
Confidence            9999999987         6666655688999999999987  99999999999999987 543322221     22347


Q ss_pred             CeEEEEEcc-CCCeEEEEEeCCCcEEEEECCc--------ceeeEEeCC-------CCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          442 KITGIQFSR-DESQRIMITSEDSKLRILDGVD--------VIHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       442 ~I~~l~~sp-~g~~~l~~~s~dg~I~iwd~~~--------~~~~~~~~~-------~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      .|.+++|+| ++ .++++++.||.|++|+...        ....+..+.       |...|.+++|+|++++|++++.||
T Consensus       195 ~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  273 (342)
T 1yfq_A          195 QIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             CEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             ceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence            899999999 85 8999999999999999753        344454431       234999999999999999999999


Q ss_pred             cEEEEEcCCCCcccccc-c-cCccceeEEccCCcEEEEecCCC
Q 005956          506 RVYVWNYDELCFPSSKQ-K-NSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~~~-~-~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .|++||+.+++...... . ...+..+.  |+|.+|+++..+.
T Consensus       274 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          274 IISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             CEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             eEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            99999999887644332 2 34444445  9999888865543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-32  Score=299.83  Aligned_cols=203  Identities=12%  Similarity=0.123  Sum_probs=165.8

Q ss_pred             eeeeccccceEEEEecCC------C-eEEEEeCCCcEEEEecCCCeE-----------eEEe-eCCCcEEEEEEeeCCCC
Q 005956          303 QELHGHKGDVLDLAWSNS------N-YLLSCSMDKTVRMWQVGCNQC-----------LNVF-DHHNYVTCVQFNPIDDN  363 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~------~-~l~s~s~Dg~I~iWd~~~~~~-----------~~~~-~h~~~V~~l~f~p~d~~  363 (667)
                      ..+.+|.+.|.+++|+|+      + +|++++.||+|+|||+.++.+           ...+ .|...|++++|++ + .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~  278 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-T  278 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-S
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-C
Confidence            346678899999999986      3 899999999999999987642           1233 4889999999998 4 5


Q ss_pred             EEEEEecCCeEEEEecCCCe-E-EEecccCCceEEE--EEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956          364 YFISGSIDGKVRIWGVCEKR-V-VDWADVRDVISAI--CYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl~~~~-~-~~~~~~~~~v~~v--~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~  438 (667)
                      .|++|+.||+|++||+.++. . ..+..|...|+++  +|+|+| ++|++|+.||+|+|||+++.+.... +..+.    
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~-~~~~~----  353 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT-TVSRF----  353 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE-EEEEC----
T ss_pred             eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc-ccccc----
Confidence            89999999999999998764 2 3467789999999  578888 8999999999999999987655332 11111    


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ....|.+++|+|++ ..+++++.|++|++||++...  ..+.+  |...|.+++|+|+|++|++|+.||+|+|||+...
T Consensus       354 ~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          354 RGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             SCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             ccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            11357899999986 679999999999999987543  44555  8999999999999999999999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.8e-30  Score=268.85  Aligned_cols=239  Identities=21%  Similarity=0.354  Sum_probs=212.1

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +|.+.|++++|+|++++|++++.||.|++||+.+...                                           
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------------------------------------------  131 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-------------------------------------------  131 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------------------------------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-------------------------------------------
Confidence            7999999999999999999999999999999986321                                           


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      .....+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.|+.|++|
T Consensus       132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~  210 (337)
T 1gxr_A          132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSW  210 (337)
T ss_dssp             EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEE
Confidence            1345677899999999999998 99999999999999999999988886 889999999999 99999999999999999


Q ss_pred             ecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       378 dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      |+++++......+...+.+++|+|+++.+++++.+|.|++||+.+....    .    ...+...|++++|+|++ .+|+
T Consensus       211 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~----~----~~~~~~~v~~~~~~~~~-~~l~  281 (337)
T 1gxr_A          211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----Q----LHLHESCVLSLKFAYCG-KWFV  281 (337)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----E----ECCCSSCEEEEEECTTS-SEEE
T ss_pred             ECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE----E----EcCCccceeEEEECCCC-CEEE
Confidence            9999998887788899999999999999999999999999999876542    1    22345789999999996 7999


Q ss_pred             EEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          458 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       458 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      +++.|+.|++||+......... .+...+.+++|+|++++|++++.||.|++|++
T Consensus       282 ~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9999999999998865444433 37889999999999999999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.5e-31  Score=280.14  Aligned_cols=284  Identities=13%  Similarity=0.164  Sum_probs=224.0

Q ss_pred             eeccccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          217 EIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+|.+.|++++|+|+    ..++++++.++.|+||++.+.....                                  
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~----------------------------------   58 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR----------------------------------   58 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE----------------------------------
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE----------------------------------
Confidence            34589999999999984    4566666777799999998632210                                  


Q ss_pred             CcccccCCcceee--eccccceEEEEecCC----C-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCE
Q 005956          293 EVFQIEESPLQEL--HGHKGDVLDLAWSNS----N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       293 ~~~~~~~~~~~~l--~gh~~~V~~l~~s~~----~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~  364 (667)
                              .+..+  ..|...|.+++|+|+    + +|++++.|++|++||+.+++.+..+. |...|++++|+|.++++
T Consensus        59 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  130 (366)
T 3k26_A           59 --------LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNL  130 (366)
T ss_dssp             --------EEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTE
T ss_pred             --------eeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCE
Confidence                    01111  136788999999998    6 89999999999999999999988886 99999999999977899


Q ss_pred             EEEEecCCeEEEEecCCCeEEEe----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEe---------
Q 005956          365 FISGSIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD---------  431 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~~----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~---------  431 (667)
                      |++++.|+.|++||+.+++....    ..+...|.+++|+|++++|++++.||.|++||+++.........         
T Consensus       131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (366)
T 3k26_A          131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT  210 (366)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred             EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence            99999999999999999887764    47889999999999999999999999999999987543321000         


Q ss_pred             ------------eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee--------------eEEeCCCCCC
Q 005956          432 ------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--------------KFKGLPKSGS  485 (667)
Q Consensus       432 ------------~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~--------------~~~~~~~~~~  485 (667)
                                  .......+...|++++|++   .++++++.|+.|++||+.....              ......|...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (366)
T 3k26_A          211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD  287 (366)
T ss_dssp             SSCCCCEEECCCSEEECSSCSSCCCEEEEET---TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred             cccccceeeccCccccccCCcceEEEEEEcC---CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence                        0001122568899999992   5999999999999999764311              2223347788


Q ss_pred             eEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCccc-----cccc--cCccceeEEccCCcEEEEecCC
Q 005956          486 QMSASFTTT--GKHIISIGDDCRVYVWNYDELCFPS-----SKQK--NSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       486 v~~v~~spd--g~~l~sgs~Dg~I~iWd~~~~~~~~-----~~~~--~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      |.+++|+|+  +++|++|+.||.|++||+.+++...     ....  ...+..+.|+|++.+|+++..+
T Consensus       288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  356 (366)
T 3k26_A          288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD  356 (366)
T ss_dssp             SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence            999999999  9999999999999999999876432     1122  4567778999999999886543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.8e-31  Score=275.90  Aligned_cols=280  Identities=12%  Similarity=0.171  Sum_probs=222.1

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      +...++.+|.+.|.+++|+|++ +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+.|++|
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence            4567899999999999999999 99999999999999999999888876 888999999999 99999999999999999


Q ss_pred             ecCCCe-----EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          378 GVCEKR-----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       378 dl~~~~-----~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      |+.+..     ......|...|.++.|++++. +++++.|+.|++||+.++.....       ...|...|++++|+|++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~-------~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT-------FTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTS
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE-------EcCCCCceEEEEECCCC
Confidence            998753     234667889999999999875 88999999999999987765322       22345789999999986


Q ss_pred             CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-c--cCccce
Q 005956          453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-K--NSVRSC  529 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~--~~~~~~  529 (667)
                       .++++++.|+.|++||+...........|...|.+++|+|++++|++|+.||.|+|||+.++....... .  ...+.+
T Consensus       197 -~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          197 -RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             -SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             -CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence             899999999999999988655444445588999999999999999999999999999998876543322 1  234667


Q ss_pred             eEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC
Q 005956          530 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS  595 (667)
Q Consensus       530 ~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~  595 (667)
                      +.|+|+|.+++++.....  ++++.......    -..+..+...+....|++++.+++.|+..+.
T Consensus       276 ~~~s~~g~~l~~g~~d~~--i~vwd~~~~~~----~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFN--CNVWDALKADR----AGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EEECTTSSEEEEEETTSE--EEEEETTTCCE----EEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             EEECCCCCEEEEECCCCe--EEEEEcccCcE----eeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence            899999999999765432  22222111000    0112233344566789999999988776665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.2e-30  Score=275.89  Aligned_cols=273  Identities=18%  Similarity=0.285  Sum_probs=214.6

Q ss_pred             cccceeeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          212 LYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      ....+.+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+..........                           
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------------------------   85 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK---------------------------   85 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC---------------------------
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc---------------------------
Confidence            344566788999999999999 9999999999999999999864321110000                           


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC--CCCEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDNYFI  366 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~--d~~~l~  366 (667)
                        .   ..........+|...|.+++|+| ++ +|++++.|+.|++||+.+++.+..+.+...+.++.|.|.  ++.+++
T Consensus        86 --~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (408)
T 4a11_B           86 --A---VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA  160 (408)
T ss_dssp             --E---EEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEE
T ss_pred             --c---cccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEE
Confidence              0   00000111246999999999999 55 999999999999999999999999999999999999983  234999


Q ss_pred             EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEee---------ccc
Q 005956          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF---------HDR  435 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~---------~~~  435 (667)
                      +++.|+.|++||+.+++.+. +..|...|.+++|+|+++ .+++|+.||.|++||++........+..         ...
T Consensus       161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (408)
T 4a11_B          161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA  240 (408)
T ss_dssp             EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred             EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence            99999999999999887654 566889999999999998 5889999999999999876543332211         111


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-----------------------------------------
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-----------------------------------------  474 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-----------------------------------------  474 (667)
                      ...+...|++++|+|++ .+|++++.|+.|++||+....                                         
T Consensus       241 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  319 (408)
T 4a11_B          241 NTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY  319 (408)
T ss_dssp             SCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEE
T ss_pred             cccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEE
Confidence            13467889999999995 899999999999999975321                                         


Q ss_pred             ------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          475 ------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       475 ------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                            .......|...|.+++|+|++++|++++.||.|++||+.+.+.
T Consensus       320 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          320 TVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             ECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence                  1112234788999999999999999999999999999998764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-31  Score=288.77  Aligned_cols=273  Identities=13%  Similarity=0.119  Sum_probs=214.2

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ..+++++|+|+|++|++|+.||.|++||+.+..                                             ..
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~---------------------------------------------~~   91 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRD---------------------------------------------GS   91 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEE---------------------------------------------TT
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccc---------------------------------------------ee
Confidence            445689999999999999999999999987521                                             12


Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                      ..+..| ..+....|++++ +|++++.|+.|++||+.++++...+ .|...|++++|+| ++++|++|+.|++|++||+.
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A           92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence            233344 344555788888 9999999999999999999998887 5999999999999 99999999999999999999


Q ss_pred             CCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc-cc-----------------CcCCC
Q 005956          381 EKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-RK-----------------KTSGN  441 (667)
Q Consensus       381 ~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~-~~-----------------~~~~~  441 (667)
                      +++.+ .+..|...|.+++|+|++++|++++.||.|++||+++.+.... +..+. +.                 ..+..
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT-FNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE-eecCCCCCCCccEEEEecCCcceeeecccC
Confidence            87755 4667899999999999999999999999999999987765432 11110 00                 00124


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCccc
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      .+++++|+|++ .+|++++.||.|++||+......... ..|...+.+++|+|+++ +|++|+.||.|++||+.++..+.
T Consensus       249 ~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  327 (420)
T 3vl1_A          249 KKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV  327 (420)
T ss_dssp             CCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred             cccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence            45555567875 89999999999999998865444433 23678999999999999 99999999999999999875422


Q ss_pred             ---cccccCccceeEEccCCcEEEEecCC
Q 005956          520 ---SKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       520 ---~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                         ..+......++ +++++.+++++..+
T Consensus       328 ~~~~~~~~~~v~~~-~~~~~~~l~s~~~d  355 (420)
T 3vl1_A          328 GEFLINEGTPINNV-YFAAGALFVSSGFD  355 (420)
T ss_dssp             EEEEESTTSCEEEE-EEETTEEEEEETTT
T ss_pred             hhhhccCCCCceEE-EeCCCCEEEEecCC
Confidence               22344555565 55678888776443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=2e-30  Score=299.42  Aligned_cols=244  Identities=22%  Similarity=0.398  Sum_probs=201.1

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.+.+|.+.|++++|+|+|++|+||+.||+|+|||+.++                                        
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~----------------------------------------  462 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG----------------------------------------  462 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Confidence            4568899999999999999999999999999999999862                                        


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe----eCCCcEEEEEEeeCCC--CEEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDD--NYFIS  367 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~d~--~~l~s  367 (667)
                           ..+..+.+|...|.+++|+|++ +|++++.|++|+|||+.........    .|...|.+++|+| ++  ..|++
T Consensus       463 -----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s  536 (694)
T 3dm0_A          463 -----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVS  536 (694)
T ss_dssp             -----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEE
T ss_pred             -----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEE
Confidence                 3456788999999999999999 9999999999999998765544443    3888999999999 54  68999


Q ss_pred             EecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      |+.|++|++||+.++++.. +..|...|++++|+|+|++|++|+.||.|++||+.+.+....   +.     +...|.++
T Consensus       537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~---~~-----~~~~v~~~  608 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS---LE-----ANSVIHAL  608 (694)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC---CB-----CSSCEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE---ec-----CCCcEEEE
Confidence            9999999999999988764 667899999999999999999999999999999988765322   11     23679999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCccee--eEEeC-----------------CCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGL-----------------PKSGSQMSASFTTTGKHIISIGDDCRV  507 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~~-----------------~~~~~v~~v~~spdg~~l~sgs~Dg~I  507 (667)
                      +|+|++ .++++ +.++.|+|||+.....  .+...                 .+...+++++|+|+|++|++|+.||.|
T Consensus       609 ~~sp~~-~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i  686 (694)
T 3dm0_A          609 CFSPNR-YWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI  686 (694)
T ss_dssp             EECSSS-SEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEcCCC-cEEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence            999985 55544 5567799999875432  22211                 112247899999999999999999999


Q ss_pred             EEEEcCC
Q 005956          508 YVWNYDE  514 (667)
Q Consensus       508 ~iWd~~~  514 (667)
                      +||++..
T Consensus       687 ~iW~i~~  693 (694)
T 3dm0_A          687 RVWGIGR  693 (694)
T ss_dssp             EEEEC--
T ss_pred             EEEeccC
Confidence            9999853

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=6.7e-31  Score=276.86  Aligned_cols=246  Identities=19%  Similarity=0.338  Sum_probs=205.2

Q ss_pred             cccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          220 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       220 ~H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .|.+.|++++|+|+    |++|++|+.||.|+|||+.+                                          
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------------------------------  104 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------------------------------  104 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT------------------------------------------
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh------------------------------------------
Confidence            47789999999999    77999999999999999985                                          


Q ss_pred             cccCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEe----eCCCcEEEEEEeeCCCCEEEEEe
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                         .+.+..+.+|...|.+++|+| ++ +|++++.|++|++||+.+++.+..+    .|...|.+++|+| ++++|++++
T Consensus       105 ---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  180 (366)
T 3k26_A          105 ---MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCG  180 (366)
T ss_dssp             ---CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ---ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEec
Confidence               244677889999999999999 77 9999999999999999999999887    4899999999999 999999999


Q ss_pred             cCCeEEEEecCCCeEEEe-----------------------------cccCCceEEEEEeeCCCEEEEEecCCcEEEEEe
Q 005956          370 IDGKVRIWGVCEKRVVDW-----------------------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  420 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~~-----------------------------~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~  420 (667)
                      .|+.|++||+.+++....                             ..+...|.+++|+  ++++++++.||.|++||+
T Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred             CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence            999999999988654321                             1278889999998  789999999999999999


Q ss_pred             cCCcceeeeE-------eeccccCcCCCCeEEEEEccC--CCeEEEEEeCCCcEEEEECCcc------eeeEEeCCCCCC
Q 005956          421 SGNDLKLEKV-------DFHDRKKTSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGS  485 (667)
Q Consensus       421 ~~~~~~~~~~-------~~~~~~~~~~~~I~~l~~sp~--g~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~  485 (667)
                      .+........       ........+...|++++|+|+  + .+|++++.||.|++||+...      ...+..+.+...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  337 (366)
T 3k26_A          259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA  337 (366)
T ss_dssp             SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC
T ss_pred             CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCc
Confidence            8765421100       011112234578999999998  6 89999999999999998742      224555444799


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          486 QMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       486 v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      |.+++|+|++++|++++.||.|+|||+.+
T Consensus       338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          338 IRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             eEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            99999999999999999999999999853

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7e-31  Score=285.38  Aligned_cols=259  Identities=15%  Similarity=0.214  Sum_probs=202.8

Q ss_pred             ccceee-ccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          213 YTSQEI-QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       213 ~~~~~l-~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      .+.+.+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+.....                                
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--------------------------------  100 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--------------------------------  100 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--------------------------------
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--------------------------------
Confidence            345566 89999999999999 99999999999999999987410000                                


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC---CCeEeEEee-------------CCCcEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---CNQCLNVFD-------------HHNYVT  353 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~---~~~~~~~~~-------------h~~~V~  353 (667)
                             .......+ +|...|.+++|+|++ +|++++.|++|++||+.   +++.+..+.             +...+.
T Consensus       101 -------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  172 (437)
T 3gre_A          101 -------VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV  172 (437)
T ss_dssp             -------CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred             -------ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence                   01122333 599999999999988 99999999999999995   454443322             556777


Q ss_pred             EEE--EeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecc--cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          354 CVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       354 ~l~--f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~--~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      ++.  +++ ++.+|++|+.|+.|++||+++++.+. +..  |...|++++|+|++++|++|+.||.|++||++.......
T Consensus       173 ~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (437)
T 3gre_A          173 RMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRS  251 (437)
T ss_dssp             EEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEE
Confidence            777  456 78999999999999999999988765 334  788999999999999999999999999999997554322


Q ss_pred             eEeeccccCcCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCcc--eeeEEeC-----------------------
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSEDSKLRILDGVDV--IHKFKGL-----------------------  480 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~---g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~-----------------------  480 (667)
                       +.+     .+...|++++|+|.   ++.+|++++.|+.|++||+.+.  ...+.++                       
T Consensus       252 -~~~-----~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (437)
T 3gre_A          252 -WSF-----GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG  325 (437)
T ss_dssp             -EBC-----TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred             -Eec-----CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence             211     23468999977653   2379999999999999998743  3333322                       


Q ss_pred             -CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          481 -PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       481 -~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                       .|...|.+++|+ ++++|++|+.|+.|++||+.+++...
T Consensus       326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence             155668999999 78999999999999999999887543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7.6e-31  Score=305.52  Aligned_cols=255  Identities=20%  Similarity=0.293  Sum_probs=210.6

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.+.+|.+.|++++|+|+|++|++|+.||.|+|||+....                                       
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------------------------   42 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------------------------   42 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------------------------
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------------------------
Confidence            45788999999999999999999999999999999987421                                       


Q ss_pred             ccccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCC--CCEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFI  366 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d--~~~l~  366 (667)
                          ...+..+.+|.+.|++++|+++  + +|++|+.||+|++||+.+++  .+..+ .|...|++++|+| +  +++++
T Consensus        43 ----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~  117 (753)
T 3jro_A           43 ----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLL  117 (753)
T ss_dssp             ----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEE
T ss_pred             ----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEE
Confidence                2346678899999999999987  6 99999999999999999986  44444 4899999999999 7  89999


Q ss_pred             EEecCCeEEEEecCCCe---EEEecccCCceEEEEEee-------------CCCEEEEEecCCcEEEEEecCCcceeeeE
Q 005956          367 SGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEKV  430 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~---~~~~~~~~~~v~~v~~sp-------------dg~~l~~gs~dg~i~l~d~~~~~~~~~~~  430 (667)
                      +|+.||.|++||+.++.   ......+...|.+++|+|             +++.+++|+.||.|++||+++........
T Consensus       118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~  197 (753)
T 3jro_A          118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (753)
T ss_dssp             EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence            99999999999998873   345667889999999999             58999999999999999999875433211


Q ss_pred             eeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCcce-----eeEEeCCCCCCeEEEEEcCCCCEEEEEeC
Q 005956          431 DFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGD  503 (667)
Q Consensus       431 ~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v~~v~~spdg~~l~sgs~  503 (667)
                      .   ....|...|++++|+|++  +.++++++.||.|++||+....     .......|...|.+++|+|+|++|++|+.
T Consensus       198 ~---~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          198 S---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (753)
T ss_dssp             E---EECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred             e---eecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence            1   123456899999999994  4899999999999999977532     22233447888999999999999999999


Q ss_pred             CCcEEEEEcCCCC
Q 005956          504 DCRVYVWNYDELC  516 (667)
Q Consensus       504 Dg~I~iWd~~~~~  516 (667)
                      ||.|+||++..+.
T Consensus       275 Dg~I~vwd~~~~~  287 (753)
T 3jro_A          275 DNKVTLWKENLEG  287 (753)
T ss_dssp             SSCEECCBCCSSS
T ss_pred             CCEEEEEecCCCC
Confidence            9999999998654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.7e-29  Score=263.81  Aligned_cols=248  Identities=22%  Similarity=0.389  Sum_probs=205.2

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ..+.+++|.+.|++++|+|+|++|++|+.|+.|++|+....                                       
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~---------------------------------------  118 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---------------------------------------  118 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------------------------------------
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc---------------------------------------
Confidence            34678899999999999999999999999999999998852                                       


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe--eCCCcEEEEEEeeCC-CCEEEEEe
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPID-DNYFISGS  369 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~d-~~~l~sgs  369 (667)
                            ........+...+..+.+++++ .|++++.|+.+++||+.........  .|...+.+++|++.. ..++++++
T Consensus       119 ------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          119 ------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             ------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             ------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence                  2244455677888899999988 9999999999999999876655443  488999999998832 35788999


Q ss_pred             cCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      .|+.|++||+.+++... +..|...|++++|+|++++|++|+.||.|++||+++......   +..     ...|.++.|
T Consensus       193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~---~~~-----~~~v~~~~~  264 (340)
T 4aow_A          193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT---LDG-----GDIINALCF  264 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE---EEC-----SSCEEEEEE
T ss_pred             CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee---ecC-----CceEEeeec
Confidence            99999999999988765 667889999999999999999999999999999987655332   122     267999999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCcceeeEE---------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          449 SRDESQRIMITSEDSKLRILDGVDVIHKFK---------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~---------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      +|++  .+++++.|+.|++||+........         ...|...|++++|+|+|++|++|+.||.|+|||+.+|.
T Consensus       265 ~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          265 SPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            9985  577778899999999875332221         23478899999999999999999999999999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=7.1e-30  Score=270.25  Aligned_cols=282  Identities=15%  Similarity=0.139  Sum_probs=222.4

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      +...++.+|...|++++|+|++ +|++|+.|++|+|||..+++....+. |...|.+++|+| ++.+|++|+.|+.+++|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEE
Confidence            4567899999999999999999 99999999999999999988877775 788999999999 99999999999999999


Q ss_pred             ecCCC-------eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          378 GVCEK-------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       378 dl~~~-------~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      ++...       .......|...|.+++|+|++..|++++.||+|++||+.+++....   +    ..|...|.++.|+|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~---~----~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS---F----HGHGADVLCLDLAP  206 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE---E----ECCSSCEEEEEECC
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE---E----cCCCCCeEEEEEEe
Confidence            98643       2334567889999999999999999999999999999988765432   2    23457899999988


Q ss_pred             CC-CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc---ccCc
Q 005956          451 DE-SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ---KNSV  526 (667)
Q Consensus       451 ~g-~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~---~~~~  526 (667)
                      +. +.+|++++.|+.|++||+...........|...|.+++|+|++.+|++|+.|++|++||+..........   ....
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~  286 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG  286 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence            52 3799999999999999988655444445588999999999999999999999999999998875433221   1234


Q ss_pred             cceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC
Q 005956          527 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS  595 (667)
Q Consensus       527 ~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~  595 (667)
                      ..++.|+|+|.+|+++..+..  ++++......    ....+..+...+....|||++.+++.|+..+.
T Consensus       287 ~~~~~~s~~g~~l~~g~~d~~--i~vwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          287 ASSVDFSLSGRLLFAGYNDYT--INVWDVLKGS----RVSILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSC--EEEEETTTCS----EEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             eeEEEEeCCCCEEEEEECCCc--EEEEECCCCc----eEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence            567899999999999875542  2222111100    00112233445567789999999998876664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.7e-30  Score=276.28  Aligned_cols=258  Identities=14%  Similarity=0.187  Sum_probs=207.9

Q ss_pred             cceeeccccccEEEEEEcCC----C---CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCc
Q 005956          214 TSQEIQAHKGCIWTLKFSPD----G---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  286 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspd----g---~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (667)
                      ....+.+|...|++++|+|+    |   ++|++++.||.|++|++.+....                             
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~-----------------------------  104 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET-----------------------------  104 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT-----------------------------
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc-----------------------------
Confidence            45667799999999999999    9   99999999999999999852210                             


Q ss_pred             eeecCCCcccccCCcceeeecc-----ccceEEEEec----CCC-e-EEEEeCCCcEEEEecCC------CeEeE-----
Q 005956          287 PVVIPDEVFQIEESPLQELHGH-----KGDVLDLAWS----NSN-Y-LLSCSMDKTVRMWQVGC------NQCLN-----  344 (667)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~l~gh-----~~~V~~l~~s----~~~-~-l~s~s~Dg~I~iWd~~~------~~~~~-----  344 (667)
                                 ....+..+.+|     ...|.+++|+    |++ + |++++.|+.|++||+.+      ++.+.     
T Consensus       105 -----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  173 (397)
T 1sq9_A          105 -----------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL  173 (397)
T ss_dssp             -----------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred             -----------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence                       00115666777     5899999999    888 7 99999999999999988      65554     


Q ss_pred             Ee--------eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecc---c---CCceEEEEEeeCCCEEEEE
Q 005956          345 VF--------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD---V---RDVISAICYIPDGKGFIVG  409 (667)
Q Consensus       345 ~~--------~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~---~---~~~v~~v~~spdg~~l~~g  409 (667)
                      .+        .|...|.+++|+| ++ +|++++.|+.|++||+++++.+. +..   |   ...|.+++|+|++++|+++
T Consensus       174 ~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~  251 (397)
T 1sq9_A          174 ELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA  251 (397)
T ss_dssp             EEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred             eeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE
Confidence            44        2788999999999 88 99999999999999999988765 444   6   8899999999999999999


Q ss_pred             ecC---CcEEEEEecCCcceeeeEeecc-------ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe
Q 005956          410 SIT---GTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG  479 (667)
Q Consensus       410 s~d---g~i~l~d~~~~~~~~~~~~~~~-------~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~  479 (667)
                      +.|   |.|++||+++.+.... +....       ....|...|++++|+|++ .+|++++.|+.|++||+.........
T Consensus       252 ~~d~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          252 HDSNSFGCITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             EEETTEEEEEEEETTTCCEEEE-ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ecCCCCceEEEEECCCCcccce-eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            999   9999999987765432 11100       000145889999999996 89999999999999998755443333


Q ss_pred             C------CC---------------CCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcCCC
Q 005956          480 L------PK---------------SGSQMSASFTTTG----------KHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       480 ~------~~---------------~~~v~~v~~spdg----------~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      .      .|               ...|.+++|+|++          ++|++++.||.|+||++.++
T Consensus       330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            3      45               8899999999998          79999999999999999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=3.4e-30  Score=302.26  Aligned_cols=355  Identities=19%  Similarity=0.179  Sum_probs=261.8

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+                                       
T Consensus        46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~---------------------------------------   86 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT---------------------------------------   86 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred             ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------------------------------------
Confidence            34567789999999999999999999999999999999986                                       


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-eEeEEee-CCCcEEEEEEeeCCCCEEEEEe
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                            .+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.++ .....+. |...|.+++|+|.+++.|++++
T Consensus        87 ------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           87 ------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             ------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             ------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence                  34467788999999999999999 9999999999999999887 5666654 8899999999996678999999


Q ss_pred             cCCeEEEEecCCCeEEE-ec-ccCCceEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          370 IDGKVRIWGVCEKRVVD-WA-DVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~-~~-~~~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      .|+.|++||+.++.... .. .+...+.+++|+|  ++.++++|+.+|.|++||+.+...... +      ..|...|++
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~------~~~~~~v~~  233 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT-L------EGHMSNVSF  233 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE-E------ECCSSCEEE
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE-E------cCCCCCEEE
Confidence            99999999998766443 33 3448899999999  999999999999999999987664322 2      123478999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCCcccc---
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELCFPSS---  520 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~Dg~I~iWd~~~~~~~~~---  520 (667)
                      ++|+|++ .++++++.||.|++||............+...+.+++|+|+|.  ++++++ ++.+.+|++........   
T Consensus       234 ~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  311 (814)
T 3mkq_A          234 AVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDP  311 (814)
T ss_dssp             EEECSSS-SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECS
T ss_pred             EEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECC
Confidence            9999996 7999999999999999886555555555788999999999997  455555 67788998765321110   


Q ss_pred             -----------------------------------------ccccCccceeEEccCCcEEEEecCCCCcccccccCCCCC
Q 005956          521 -----------------------------------------KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLR  559 (667)
Q Consensus       521 -----------------------------------------~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~  559 (667)
                                                               .........+.|+|+|.+++++..+.   +.++..    
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~---~~i~~~----  384 (814)
T 3mkq_A          312 VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGE---YVIYTA----  384 (814)
T ss_dssp             SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTE---EEEEET----
T ss_pred             CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCE---EEEEEC----
Confidence                                                     01111245678888888888876321   111111    


Q ss_pred             CcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccC
Q 005956          560 DCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI  638 (667)
Q Consensus       560 ~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (667)
                         ..|..  ..........|||++.+++.+...|. ..|..-+...       ..                   .....
T Consensus       385 ---~~~~~--~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~-------~~-------------------v~~~~  433 (814)
T 3mkq_A          385 ---LAWRN--KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT-------SW-------------------SVPMH  433 (814)
T ss_dssp             ---TTTEE--EEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECT-------TC-------------------CCCCS
T ss_pred             ---ccccc--cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCcc-------ce-------------------EEcCC
Confidence               01110  01123345678888888888776665 3342111000       00                   00123


Q ss_pred             CCCCc---eEEEecCCCCeEeeee
Q 005956          639 SATWG---LVIVTAGCDGMIKTFH  659 (667)
Q Consensus       639 ~~~~g---~vivta~~~G~ir~f~  659 (667)
                      .++.|   ..+++++-||.|++|.
T Consensus       434 ~s~dg~~~~~l~~~~~d~~v~~~d  457 (814)
T 3mkq_A          434 SAIDRLFSGALLGVKSDGFVYFFD  457 (814)
T ss_dssp             SCCCEEECSSSEEEEETTEEEEEC
T ss_pred             cCccceecceEEEEecCCEEEEEE
Confidence            34555   3568889999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-29  Score=264.77  Aligned_cols=244  Identities=15%  Similarity=0.187  Sum_probs=207.1

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      ...+.+|...|++++|+|++ +|++++.|+.|++||+.+++.+..+. |...|++++|+| ++++|++++.|+.|++||+
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEET
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Confidence            45688999999999999999 99999999999999999999998886 899999999999 9999999999999999999


Q ss_pred             CCCeEEEecccCCceEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeecc----ccCcCCC--CeEEEEE
Q 005956          380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHD----RKKTSGN--KITGIQF  448 (667)
Q Consensus       380 ~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~----~~~~~~~--~I~~l~~  448 (667)
                      .+++.+....+...+.+++|+|+++++++++.+     |.|++||+..............    ....+..  .+.+++|
T Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            999988777789999999999999999999999     9999999987654332111111    0111223  8999999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCcc
Q 005956          449 SRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR  527 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~  527 (667)
                      +|++ .+|++++.|+.|++||+.. .........|...|.+++|+|++++|++++.|+.|++||+.++............
T Consensus       184 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  262 (369)
T 3zwl_B          184 STKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL  262 (369)
T ss_dssp             CGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred             cCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCc
Confidence            9986 7999999999999999876 4444444448899999999999999999999999999999998776655566667


Q ss_pred             ceeEEccCCcEEEEecCCCC
Q 005956          528 SCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       528 ~~~~fs~dg~~lav~w~~~~  547 (667)
                      ..+.|+|++..++++.....
T Consensus       263 ~~~~~~~~~~~l~~~~~~~~  282 (369)
T 3zwl_B          263 NTAVITPLKEFIILGGGQEA  282 (369)
T ss_dssp             EEEEECSSSSEEEEEECCC-
T ss_pred             eeEEecCCCceEEEeecCCC
Confidence            77899999999999876554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=4.8e-30  Score=290.39  Aligned_cols=275  Identities=13%  Similarity=0.164  Sum_probs=221.6

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      ..|.+.|++++|+|+|++||+++ ++.|+||++.++..                                         .
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------------------------~   52 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------------------------K   52 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------------------------S
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------------------------c
Confidence            36899999999999999999998 78999999985210                                         0


Q ss_pred             CCcceeeeccccc-eEEEEecC--CC-eEEEEeCCCcEEEEecCCC--------eEeEEee-CCCcEEEEEEeeCCCCEE
Q 005956          299 ESPLQELHGHKGD-VLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN--------QCLNVFD-HHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       299 ~~~~~~l~gh~~~-V~~l~~s~--~~-~l~s~s~Dg~I~iWd~~~~--------~~~~~~~-h~~~V~~l~f~p~d~~~l  365 (667)
                      ......+.+|... |.+++|+|  ++ +|++++.|++|++||+.++        +.+..+. |...|.+++|+| ++++|
T Consensus        53 ~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l  131 (615)
T 1pgu_A           53 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRL  131 (615)
T ss_dssp             SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEE
T ss_pred             cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEE
Confidence            1457788899999 99999999  99 9999999999999999754        5555554 889999999999 99999


Q ss_pred             EEEecC----CeEEEEecCCCeEEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956          366 ISGSID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       366 ~sgs~D----g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~  440 (667)
                      ++++.+    +.|++|| .......+..|...|.+++|+|+++ .+++++.||.|++||+.+.+....   +    ..|.
T Consensus       132 ~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~---~----~~~~  203 (615)
T 1pgu_A          132 CVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS---D----RTHH  203 (615)
T ss_dssp             EEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE---E----CSSS
T ss_pred             EEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee---e----cccC
Confidence            999988    7899999 3344556778999999999999998 899999999999999887654322   2    2234


Q ss_pred             C---CeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe-C---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          441 N---KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-L---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       441 ~---~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~---~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      .   .|++++|+|+++.+|++++.|+.|++||+.+....... .   .|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence            5   89999999992389999999999999998765444443 2   588999999999 99999999999999999999


Q ss_pred             CCCcccccccc-----CccceeEEccCCcEEEEecCCC
Q 005956          514 ELCFPSSKQKN-----SVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       514 ~~~~~~~~~~~-----~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      +++........     .....+.|. ++..++++....
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g  319 (615)
T 1pgu_A          283 TSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG  319 (615)
T ss_dssp             TTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred             CCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence            87654332221     233344554 777777765543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=4.5e-29  Score=273.31  Aligned_cols=271  Identities=20%  Similarity=0.316  Sum_probs=222.0

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+.+.+|.+.|++++|+|++ +|++|+.||+|+|||+.++                                      
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~--------------------------------------  193 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG--------------------------------------  193 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT--------------------------------------
T ss_pred             cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC--------------------------------------
Confidence            3456788999999999999988 9999999999999999863                                      


Q ss_pred             CcccccCCcceeeeccccceEEEEec--CCC-eEEEEeCCCcEEEEecCCCeEe-----------------------EEe
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWS--NSN-YLLSCSMDKTVRMWQVGCNQCL-----------------------NVF  346 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s--~~~-~l~s~s~Dg~I~iWd~~~~~~~-----------------------~~~  346 (667)
                             +.+..+.+|...|.+++|+  +++ +|++++.|++|++||+.++...                       ..+
T Consensus       194 -------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          194 -------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             -------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             -------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence                   3466788999999999998  466 8999999999999999876532                       223


Q ss_pred             -eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCc
Q 005956          347 -DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  424 (667)
Q Consensus       347 -~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~  424 (667)
                       .|...|.++  ++ +++++++|+.|+.|++||+.+++.+. +..|...|.+++|+|+++.+++|+.||.|++||+++++
T Consensus       267 ~~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          267 RGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             CCCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cCccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence             477888887  45 78999999999999999999988765 66788999999999999999999999999999998876


Q ss_pred             ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956          425 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  504 (667)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D  504 (667)
                      ....       ...|...|.++.|++   .++++++.||.|++||+.+....+... +...+..++|++++++|++|+ |
T Consensus       344 ~~~~-------~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d  411 (464)
T 3v7d_B          344 LMYT-------LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-E  411 (464)
T ss_dssp             EEEE-------ECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-T
T ss_pred             EEEE-------EeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-C
Confidence            5332       223458899999984   599999999999999998776666654 666778889999999999998 8


Q ss_pred             CcEEEEEcCCCCcccc--ccccCccceeEEccCCcEEEEecCCC
Q 005956          505 CRVYVWNYDELCFPSS--KQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       505 g~I~iWd~~~~~~~~~--~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      |.|+|||+.+++....  ......+..+.|+  +..++++...+
T Consensus       412 g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~  453 (464)
T 3v7d_B          412 NQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKD  453 (464)
T ss_dssp             TEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEET
T ss_pred             CeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeC
Confidence            9999999999887543  3334555566775  55555554443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.6e-30  Score=273.48  Aligned_cols=271  Identities=18%  Similarity=0.231  Sum_probs=215.1

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC----------ceeeeeeCCCCC-ccccCCCCeEEecccCCCCce
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGG-FGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      .+|.+.|++++|+|++++||+|+.||.|+|||....          ...++.+.+++. ++....++.+.+++....   
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---  181 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG---  181 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT---
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC---
Confidence            358999999999999999999999999999994421          234455555554 333444555555554322   


Q ss_pred             eecCCCcccccCCcceeeeccccc---------------eEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCc
Q 005956          288 VVIPDEVFQIEESPLQELHGHKGD---------------VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY  351 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~gh~~~---------------V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~  351 (667)
                                  +.+..+..|...               +.+++|++++.+++++.|+.|++||+.+++.+..+. |...
T Consensus       182 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  249 (425)
T 1r5m_A          182 ------------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP  249 (425)
T ss_dssp             ------------EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC
T ss_pred             ------------cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc
Confidence                        334445555554               999999999999999999999999999998887774 8899


Q ss_pred             EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeE
Q 005956          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  430 (667)
Q Consensus       352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~  430 (667)
                      |.+++|+| ++++|++++.|+.|++||+.+++... +..+...|.+++|+|++ .+++++.||.|++||+.+...... +
T Consensus       250 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~-~  326 (425)
T 1r5m_A          250 ISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL-S  326 (425)
T ss_dssp             EEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE-E
T ss_pred             eEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe-c
Confidence            99999999 89999999999999999999877654 55688999999999999 999999999999999987664332 2


Q ss_pred             eeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--------------------eeEEeCCCCC--CeEE
Q 005956          431 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--------------------HKFKGLPKSG--SQMS  488 (667)
Q Consensus       431 ~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--------------------~~~~~~~~~~--~v~~  488 (667)
                      .      .+...|++++|+|++ .+|++++.||.|++||+....                    .......|..  .|.+
T Consensus       327 ~------~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  399 (425)
T 1r5m_A          327 I------VDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD  399 (425)
T ss_dssp             E------CTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred             c------cCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence            1      234789999999996 899999999999999987433                    3333333544  9999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          489 ASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       489 v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      ++|+|++++|++++.||.|++|+++.
T Consensus       400 ~~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          400 LSWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             EEECTTSSEEEEEESSSCCEEEECCC
T ss_pred             EEccCCCceEEEEecCceEEEEeecC
Confidence            99999999999999999999999863

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=300.23  Aligned_cols=370  Identities=11%  Similarity=0.070  Sum_probs=245.0

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce----------eeeeeCCCCCc-cccCCCCeEEecccCCCCcee
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA----------SCKSFTDDGGF-GSNAKEGKIKFGKKKSSHVPV  288 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  288 (667)
                      .|.+.|++++|+| |++||+++.|++|+|||+.++..          .++.|.+++.. .....++.+.+|+........
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~  134 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS  134 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            4888999999999 88999999999999999987543          34555666643 345566777777655432210


Q ss_pred             ecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-C-----------------
Q 005956          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-H-----------------  348 (667)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h-----------------  348 (667)
                      ......+.    ....+.+|.+.|.+++|+|++  .|++|+.|++| +||+.+++++..+. |                 
T Consensus       135 ~~i~~~~~----~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  209 (902)
T 2oaj_A          135 FKLDNLQK----SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK  209 (902)
T ss_dssp             EEECCHHH----HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred             ceeccccc----cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence            00000000    002346899999999999964  89999999999 99999999988875 3                 


Q ss_pred             -CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe--c-----------------ccCCceEEEEEee----CC-
Q 005956          349 -HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--A-----------------DVRDVISAICYIP----DG-  403 (667)
Q Consensus       349 -~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~--~-----------------~~~~~v~~v~~sp----dg-  403 (667)
                       ...|++++|+| ++.+|++|+.|++|++||+.+++.+..  .                 .+...|++++|++    ++ 
T Consensus       210 h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~  288 (902)
T 2oaj_A          210 RTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT  288 (902)
T ss_dssp             BCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE
T ss_pred             cCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC
Confidence             36799999999 999999999999999999999887642  1                 1234799999965    32 


Q ss_pred             CEEEEEecC-----CcEEEEEecCC------------------cce----------------------------------
Q 005956          404 KGFIVGSIT-----GTCHFYKASGN------------------DLK----------------------------------  426 (667)
Q Consensus       404 ~~l~~gs~d-----g~i~l~d~~~~------------------~~~----------------------------------  426 (667)
                      ..+++|+.+     ..+.+|++...                  +..                                  
T Consensus       289 ~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~  368 (902)
T 2oaj_A          289 SLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLIL  368 (902)
T ss_dssp             EEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEE
T ss_pred             EEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEE
Confidence            456666554     26777763100                  000                                  


Q ss_pred             -------eeeEeec-c-----------ccCcCCCCeEEE----------------------------------EEccCCC
Q 005956          427 -------LEKVDFH-D-----------RKKTSGNKITGI----------------------------------QFSRDES  453 (667)
Q Consensus       427 -------~~~~~~~-~-----------~~~~~~~~I~~l----------------------------------~~sp~g~  453 (667)
                             ...+.+. +           ....+...|+++                                  +|+|++ 
T Consensus       369 ~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-  447 (902)
T 2oaj_A          369 LILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-  447 (902)
T ss_dssp             EEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-
T ss_pred             EEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-
Confidence                   0000000 0           000112344444                                  446774 


Q ss_pred             eEEEEEeCCCcEEEEECCcce----eeEEe-------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc-----
Q 005956          454 QRIMITSEDSKLRILDGVDVI----HKFKG-------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF-----  517 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~~----~~~~~-------~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~-----  517 (667)
                      ++|++++.|++|++||+....    ..+..       ..|...|.+++|+|||++||+|+.||+|+||++.+++.     
T Consensus       448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~  527 (902)
T 2oaj_A          448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN  527 (902)
T ss_dssp             EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred             cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence            899999999999999976431    11211       14788999999999999999999999999999987631     


Q ss_pred             ----------------------------------------c-ccccccCccceeEEccCCcEEEEecCCCCcccccccCC
Q 005956          518 ----------------------------------------P-SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS  556 (667)
Q Consensus       518 ----------------------------------------~-~~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~  556 (667)
                                                              . ....+...+.+++|+||| +||++..+..-  +++...
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv--~lwd~~  604 (902)
T 2oaj_A          528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL--MLIDRR  604 (902)
T ss_dssp             ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE--EEEETT
T ss_pred             cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE--EEEECC
Confidence                                                    0 111234456677899999 99988765422  222211


Q ss_pred             CCCCcCc-cCcCCC-CCCcccCCCccc-----CCC---CCCCCCCCCCC-CCCCC
Q 005956          557 SLRDCSQ-KWDNLE-TAPWIRDSERFS-----LGS---WFSNDGPCRGS-ATWPA  600 (667)
Q Consensus       557 ~~~~~~~-~w~~~~-~~~~~~~~~~fS-----~~~---~~~~~g~~~g~-~~w~~  600 (667)
                      ....-.. ....+. .+...+....||     +++   .+++.|...+. .+|..
T Consensus       605 ~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          605 GPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             TTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             CCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            1000000 001111 334456778999     774   78888887776 56764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=1.3e-29  Score=270.44  Aligned_cols=247  Identities=14%  Similarity=0.186  Sum_probs=196.4

Q ss_pred             ccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       219 ~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      .+|.+.|++++|+| ++++|++++.||.|++||+.+...                                         
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------------------  153 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-----------------------------------------  153 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-----------------------------------------
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-----------------------------------------
Confidence            47999999999999 789999999999999999984111                                         


Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCC-EEEEEecCCeE
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN-YFISGSIDGKV  374 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~-~l~sgs~Dg~v  374 (667)
                        .......+|...|.+++|+|++ +|++++.|+.|++||+. ++++..+ .|...|.+++|+| ++. +|++++.|+.|
T Consensus       154 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i  229 (383)
T 3ei3_B          154 --QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATV  229 (383)
T ss_dssp             --EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEE
T ss_pred             --EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEE
Confidence              0112223456889999999999 99999999999999995 5566655 4999999999999 777 99999999999


Q ss_pred             EEEecCC----CeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC---------
Q 005956          375 RIWGVCE----KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG---------  440 (667)
Q Consensus       375 ~iwdl~~----~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~---------  440 (667)
                      ++||+++    +..+....+...|.+++|+| ++++|++++.||.|++||+++................+.         
T Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  309 (383)
T 3ei3_B          230 KLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP  309 (383)
T ss_dssp             EEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECS
T ss_pred             EEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccC
Confidence            9999998    66776668999999999999 999999999999999999988766443221111111122         


Q ss_pred             -CCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          441 -NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       441 -~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                       ..+..++|+|++ .+  +++.|+.|+|||+.+  ....+.++.+...+..++|+|++++|++|+ |+.|+|||+++
T Consensus       310 ~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          310 MYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             SSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence             344456666665 33  677999999999874  445555554667788889999999999997 99999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4.6e-30  Score=276.11  Aligned_cols=256  Identities=18%  Similarity=0.271  Sum_probs=212.5

Q ss_pred             ceeeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          215 SQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ...+.+|.+.|++++|+| ++++||+|+.||+|+||++.+.....                                   
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-----------------------------------  118 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-----------------------------------  118 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----------------------------------
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----------------------------------
Confidence            345779999999999999 99999999999999999998632110                                   


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe--e-CCCcEEEEEEeeCCCCEEEEE
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF--D-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~--~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                         ....++..+.+|...|.+++|+|++  +|++++.|++|++||+.+++++..+  . |...|++++|+| ++++|+++
T Consensus       119 ---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  194 (402)
T 2aq5_A          119 ---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTS  194 (402)
T ss_dssp             ---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEE
T ss_pred             ---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEE
Confidence               0124678889999999999999996  8999999999999999999999888  3 899999999999 99999999


Q ss_pred             ecCCeEEEEecCCCeEEEe--cccCCc-eEEEEEeeCCCEEEEE---ecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SIDGKVRIWGVCEKRVVDW--ADVRDV-ISAICYIPDGKGFIVG---SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~~--~~~~~~-v~~v~~spdg~~l~~g---s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +.|+.|++||+++++.+..  ..|.+. +.+++|+|++++|++|   +.++.|++||+++...........     +...
T Consensus       195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~  269 (402)
T 2aq5_A          195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----TSSG  269 (402)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----CCSS
T ss_pred             ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----CCCc
Confidence            9999999999999887754  356554 8999999999999999   789999999998766533322222     2367


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      +.+++|+|++..++++++.|+.|++||+...   ...+..+.+...+.+++|+|++.++++  .++.+++|++.++.
T Consensus       270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            9999999997444456668999999998743   455666557789999999999998875  56799999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=2.4e-30  Score=276.63  Aligned_cols=292  Identities=15%  Similarity=0.198  Sum_probs=224.2

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      ....++.+|.+.|++++|+|++ +|++|+.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+.+++|
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIF  135 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEE
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEE
Confidence            3467899999999999999999 99999999999999999999888886 889999999999 99999999999999999


Q ss_pred             ecCCCe--------EEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          378 GVCEKR--------VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       378 dl~~~~--------~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      |+.+..        ...+..|.+.+.++.|.|+ +..|++|+.|++|++||+.++..... +. ......|...|.++.|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~-~~-~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI-FG-SEFPSGHTADVLSLSI  213 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE-EC-CCSSSSCCSCEEEEEE
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE-ee-cccCCCCccCeEEEEe
Confidence            997532        1235678889999999996 45799999999999999998765432 11 1112346788999999


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECC---cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc---
Q 005956          449 SRDESQRIMITSEDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ---  522 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~---~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~---  522 (667)
                      ++.+..++++++.|+.|++||++   .....+.  .|...|.+++|+|++++|++|+.||+|+|||+.++.......   
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~  291 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYH--GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP  291 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC--CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCCCcceEEEC--CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence            88556899999999999999986   2334444  488999999999999999999999999999999876533211   


Q ss_pred             -----ccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccC-cCCCCCCcccCCCcccCCCCCCCCCCCCCC-
Q 005956          523 -----KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKW-DNLETAPWIRDSERFSLGSWFSNDGPCRGS-  595 (667)
Q Consensus       523 -----~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-  595 (667)
                           ......+++|+|+|.+++++.....  ++++....... .... .....+...+....|||++.+++.|+..+. 
T Consensus       292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~--i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSISGRLLFAGYSNGD--CYVWDTLLAEM-VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL  368 (380)
T ss_dssp             SSSCCSSCSCSEEEECSSSSEEEEECTTSC--EEEEETTTCCE-EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred             cccccccCceEEEEECCCCCEEEEEECCCC--EEEEECCCCce-EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence                 1123567899999999999765432  22221111000 0000 001233445667789999999999887776 


Q ss_pred             CCCC
Q 005956          596 ATWP  599 (667)
Q Consensus       596 ~~w~  599 (667)
                      ..|.
T Consensus       369 ~iW~  372 (380)
T 3iz6_a          369 KIWA  372 (380)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            3464

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.6e-29  Score=269.23  Aligned_cols=243  Identities=21%  Similarity=0.334  Sum_probs=202.7

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .|.+.|++++|+|++++|++|+.||.|+|||+.+                                             .
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~---------------------------------------------~  166 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES---------------------------------------------Q  166 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------C
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC---------------------------------------------C
Confidence            3899999999999999999999999999999986                                             2


Q ss_pred             CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecC-CCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~-~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      +.+..+.+|...|.+++|++ ..|++++.|+.|++||+. ....+..+ .|...|.+++|+| ++++|++|+.|+.|++|
T Consensus       167 ~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw  244 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIW  244 (401)
T ss_dssp             CEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             eEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence            44667789999999999943 399999999999999998 45555555 4999999999999 99999999999999999


Q ss_pred             ecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEe--cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          378 GVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       378 dl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs--~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      |+.+++... +..+...|.+++|+|++. .+++|+  .||.|++||+.+...... +.       +...|++++|+|++ 
T Consensus       245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~-------~~~~v~~~~~s~~~-  315 (401)
T 4aez_A          245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VD-------AGSQVTSLIWSPHS-  315 (401)
T ss_dssp             ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EE-------CSSCEEEEEECSSS-
T ss_pred             cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-Ee-------CCCcEEEEEECCCC-
Confidence            999887664 567889999999999775 555554  799999999987765432 21       23679999999996 


Q ss_pred             eEEEEE--eCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956          454 QRIMIT--SEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       454 ~~l~~~--s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      .+++++  +.||.|++||+..  .........|...|.+++|+|+|++|++++.||.|++|++.+++..
T Consensus       316 ~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            667774  4899999999875  4445445568899999999999999999999999999999987653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.1e-29  Score=273.82  Aligned_cols=258  Identities=21%  Similarity=0.302  Sum_probs=210.5

Q ss_pred             eeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          217 EIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .+.+|.+.|++++|+|+ +.+||+|+.||.|+||++........                                   .
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------------~  167 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------------P  167 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------T
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------c
Confidence            34579999999999997 78999999999999999975211000                                   0


Q ss_pred             cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE-------eEEe-eCCCcEEEEEEeeCCCCEE
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~-------~~~~-~h~~~V~~l~f~p~d~~~l  365 (667)
                      .....++..+.+|...|.+++|+|++  +|++|+.||+|++|++.++..       ...+ .|...|.+++|+|.++.+|
T Consensus       168 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  247 (430)
T 2xyi_A          168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF  247 (430)
T ss_dssp             TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred             cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence            00135678888999999999999986  899999999999999987321       2334 5889999999999778899


Q ss_pred             EEEecCCeEEEEecCCC---e-EEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956          366 ISGSIDGKVRIWGVCEK---R-VVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~---~-~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~  440 (667)
                      ++++.|+.|++||++++   + ......|...|++++|+|++. .+++|+.||.|++||++........+.      .|.
T Consensus       248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~------~h~  321 (430)
T 2xyi_A          248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHK  321 (430)
T ss_dssp             EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE------CCS
T ss_pred             EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee------cCC
Confidence            99999999999999976   2 334567889999999999987 688999999999999997544333332      234


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--------------ceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCC
Q 005956          441 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDC  505 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--------------~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg  505 (667)
                      ..|++++|+|++..+|++++.|+.|+|||+..              ....+....|...|.+++|+|+++ +|++++.||
T Consensus       322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence            78999999999877899999999999999865              233444445788999999999999 999999999


Q ss_pred             cEEEEEcCCC
Q 005956          506 RVYVWNYDEL  515 (667)
Q Consensus       506 ~I~iWd~~~~  515 (667)
                      .|+||++...
T Consensus       402 ~i~iw~~~~~  411 (430)
T 2xyi_A          402 IMQVWQMAEN  411 (430)
T ss_dssp             EEEEEEECHH
T ss_pred             CEEEeEcccc
Confidence            9999999764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4e-29  Score=268.89  Aligned_cols=270  Identities=14%  Similarity=0.195  Sum_probs=216.9

Q ss_pred             eccccccE--EEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          218 IQAHKGCI--WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       218 l~~H~~~I--~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ..+|...+  .++.|++  ..+++++.||.|+||++.++..                                       
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------------------------  125 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------------------------  125 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------------------------
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------------------------
Confidence            44676654  4466654  5688899999999999986432                                       


Q ss_pred             cccCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          296 QIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       296 ~~~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                            ...+. .|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|.+++|+   +++|++|+.|+
T Consensus       126 ------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg  196 (401)
T 4aez_A          126 ------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSG  196 (401)
T ss_dssp             ------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTS
T ss_pred             ------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCC
Confidence                  23333 388999999999999 99999999999999999999888885 89999999994   57999999999


Q ss_pred             eEEEEecCC-Ce-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          373 KVRIWGVCE-KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       373 ~v~iwdl~~-~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      .|++||++. .. ...+..|...|.+++|+|++++|++|+.||.|++||+++......       ...+...|.+++|+|
T Consensus       197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-------~~~~~~~v~~~~~~p  269 (401)
T 4aez_A          197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-------KTNHNAAVKAVAWCP  269 (401)
T ss_dssp             EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-------ECCCSSCCCEEEECT
T ss_pred             CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-------ecCCcceEEEEEECC
Confidence            999999984 33 445778899999999999999999999999999999987654322       123457899999999


Q ss_pred             CCCeEEEEEe--CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcccc---ccc
Q 005956          451 DESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSS---KQK  523 (667)
Q Consensus       451 ~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~~~~~~~~---~~~  523 (667)
                      ++..++++++  .|+.|++||+.......... +...+.+++|+|++++|++++  .||.|+||++.++.....   ...
T Consensus       270 ~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h  348 (401)
T 4aez_A          270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH  348 (401)
T ss_dssp             TSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC
Confidence            8777888876  79999999987544333332 567899999999999999954  899999999988654322   234


Q ss_pred             cCccceeEEccCCcEEEEecCC
Q 005956          524 NSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       524 ~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ...+.++.|+|+|.+|+++..+
T Consensus       349 ~~~v~~~~~s~dg~~l~s~~~d  370 (401)
T 4aez_A          349 DTRVLYSALSPDGRILSTAASD  370 (401)
T ss_dssp             SSCCCEEEECTTSSEEEEECTT
T ss_pred             CCCEEEEEECCCCCEEEEEeCC
Confidence            4566778999999999887543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-28  Score=253.12  Aligned_cols=250  Identities=20%  Similarity=0.277  Sum_probs=205.4

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+.+..|.+.|++++|+|++++|++|+.||.|++|++....                                     
T Consensus        50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-------------------------------------   92 (313)
T 3odt_A           50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS-------------------------------------   92 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT-------------------------------------
T ss_pred             EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC-------------------------------------
Confidence            3455677899999999999999999999999999999997521                                     


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                           ..+++..+.+|...|.+++|. .++|++++.|+.|++||  .++.+..+. |...|.++.|.|.+++++++++.|
T Consensus        93 -----~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  164 (313)
T 3odt_A           93 -----GEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD  164 (313)
T ss_dssp             -----TSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred             -----CCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence                 124567788999999999993 34999999999999999  566666664 899999999999889999999999


Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      +.|++||...........+...+.+++|+|++. +++++.+|.|++||+++.+.... +      ..|...|++++|+|+
T Consensus       165 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~-~------~~~~~~i~~~~~~~~  236 (313)
T 3odt_A          165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT-Y------EGHESFVYCIKLLPN  236 (313)
T ss_dssp             SCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE-E------ECCSSCEEEEEECTT
T ss_pred             CCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh-h------hcCCceEEEEEEecC
Confidence            999999943332223333888999999999998 99999999999999987765432 2      224578999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      +  .+++++.|+.|++||+.+.........|...|.+++|+|+++ +++++.||.|++|++.+++..
T Consensus       237 ~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          237 G--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             S--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred             C--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence            6  589999999999999876544444444788999999999998 567889999999999887543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=4.2e-29  Score=264.20  Aligned_cols=251  Identities=13%  Similarity=0.164  Sum_probs=204.8

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ..+.+.+|.+.|++++|+|++++|++++.||.|++||+.+...                                     
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------------------   86 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------------------------------------   86 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------------------
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-------------------------------------
Confidence            4567789999999999999999999999999999999975321                                     


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE---eEEe--eCCCcEEEEEEeeCCCCEEEE
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF--DHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~---~~~~--~h~~~V~~l~f~p~d~~~l~s  367 (667)
                            .....+.+|...|.+++|+|++ +|++++.|+.|++||+..+..   ...+  .|...|.+++|+| ++++|++
T Consensus        87 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  159 (372)
T 1k8k_C           87 ------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAA  159 (372)
T ss_dssp             ------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEE
T ss_pred             ------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEE
Confidence                  1123346789999999999999 999999999999999988762   3333  3788999999999 9999999


Q ss_pred             EecCCeEEEEecC------------------CCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          368 GSIDGKVRIWGVC------------------EKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       368 gs~Dg~v~iwdl~------------------~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      ++.|+.|++||+.                  .++.+. +..|...|.+++|+|++++|++++.||.|++||+++.+....
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence            9999999999964                  455544 557888999999999999999999999999999987765432


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--cee---------------------e---------
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIH---------------------K---------  476 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~---------------------~---------  476 (667)
                       +.      .+...|++++|+|++ .+++++ .|+.|++||+..  ...                     .         
T Consensus       240 -~~------~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
T 1k8k_C          240 -LA------SETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS  310 (372)
T ss_dssp             -EE------CSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred             -Ec------cCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence             22      234789999999996 666655 999999999765  210                     0         


Q ss_pred             --------EEe-CCCCCCeEEEEEc-CCC---CEEEEEeCCCcEEEEEcCCCCc
Q 005956          477 --------FKG-LPKSGSQMSASFT-TTG---KHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       477 --------~~~-~~~~~~v~~v~~s-pdg---~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                              ... ..|...|.+++|. ++|   .+|++|+.||.|+||++.+++.
T Consensus       311 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          311 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             cccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence                    111 2588899999965 777   9999999999999999977543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=3.4e-28  Score=265.20  Aligned_cols=299  Identities=18%  Similarity=0.268  Sum_probs=231.7

Q ss_pred             ccceeeccccccE-EEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC----------CccccCCCCeEEeccc
Q 005956          213 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG----------GFGSNAKEGKIKFGKK  281 (667)
Q Consensus       213 ~~~~~l~~H~~~I-~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~  281 (667)
                      ...+.+.+|.+.| ++  ++++|++|++|+.||+|+|||+.++..........+          .+.....++.+.+++.
T Consensus       109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA  186 (445)
T ss_dssp             CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEEC
Confidence            3456789999975 55  445689999999999999999987654432221111          2222333444444433


Q ss_pred             CCCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC
Q 005956          282 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI  360 (667)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~  360 (667)
                      .               ..+.+..+.+|...|.++.|++ +.|++++.|++|++||+.+++++..+. |...|.+++|   
T Consensus       187 ~---------------~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---  247 (445)
T 2ovr_B          187 E---------------TGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---  247 (445)
T ss_dssp             T---------------TTEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---
T ss_pred             C---------------cCcEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---
Confidence            2               2345677889999999999963 489999999999999999999888875 8899999999   


Q ss_pred             CCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      +++++++|+.|+.|++||+.+++.+. +..|...|.+++|  +++++++|+.||.|++||+++++....       ...+
T Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~  318 (445)
T 2ovr_B          248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT-------LTGH  318 (445)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE-------ECCC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE-------EcCC
Confidence            57899999999999999999988765 5668889999998  889999999999999999988765432       1233


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      ...+.++.+.+   .++++++.||.|++||+.+........   .|...|.+++|+  +++|++|+.||.|++||+.+++
T Consensus       319 ~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          319 QSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             CSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred             cccEEEEEEeC---CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence            46788888854   489999999999999987544333332   277889999995  6899999999999999999987


Q ss_pred             ccccc------cccCccceeEEccCCcEEEEecCCC
Q 005956          517 FPSSK------QKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       517 ~~~~~------~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .....      .....+..+.|+|++.++|++..+.
T Consensus       394 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          394 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence            64332      3445567789999999999876654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=1e-28  Score=254.59  Aligned_cols=239  Identities=17%  Similarity=0.195  Sum_probs=189.7

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC--CeEeEEe-eCCCcEEEEEEeeC-CCCEEEEEecCCeEEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVRI  376 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~--~~~~~~~-~h~~~V~~l~f~p~-d~~~l~sgs~Dg~v~i  376 (667)
                      +..+.+|...|.+++|+|++ +|++|+.|++|+|||+..  .+++..+ .|...|++++|+|. ++++|++|+.|++|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            34577999999999999999 999999999999999974  3566666 49999999999862 4889999999999999


Q ss_pred             EecCCCe---EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          377 WGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       377 wdl~~~~---~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      ||+.+++   ......|...|.+++|+|+  |.+|++|+.||.|++||++....... ..+    ..|...|.+++|+|+
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~----~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-III----DAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEE----ECCSSCEEEEEECCC
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eee----ecccCccceEeecCC
Confidence            9998874   3345668889999999997  89999999999999999986532211 111    234578999999997


Q ss_pred             C------------CeEEEEEeCCCcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEc
Q 005956          452 E------------SQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNY  512 (667)
Q Consensus       452 g------------~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg---~~l~sgs~Dg~I~iWd~  512 (667)
                      +            +.+|++++.|+.|++||+....    .......|...|.+++|+|++   .+|++++.|++|+|||+
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence            3            3689999999999999976422    222334588999999999995   89999999999999999


Q ss_pred             CCCCcc----cc--ccccCccceeEEccCCcEEEEecCC
Q 005956          513 DELCFP----SS--KQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       513 ~~~~~~----~~--~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      .+....    ..  ......+..+.|+|+|.+||++..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred             CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence            875321    11  1223445567999999998886553

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.2e-30  Score=272.46  Aligned_cols=252  Identities=11%  Similarity=0.151  Sum_probs=191.2

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+.+.+|.+.|++++|+|++++|++|+.||+|+|||+.+..                                     
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-------------------------------------   88 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-------------------------------------   88 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------------------------------------------
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-------------------------------------
Confidence            3456778999999999999999999999999999999998632                                     


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe---EeEEee--CCCcEEEEEEeeCCCCEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVFD--HHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~---~~~~~~--h~~~V~~l~f~p~d~~~l~  366 (667)
                           ...+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++   +...+.  |...|++++|+| ++++|+
T Consensus        89 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~  162 (377)
T 3dwl_C           89 -----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLA  162 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEE
T ss_pred             -----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEE
Confidence                 012456677899999999999998 99999999999999999887   355554  899999999999 999999


Q ss_pred             EEecCCeEEEEecC------------------CCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          367 SGSIDGKVRIWGVC------------------EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       367 sgs~Dg~v~iwdl~------------------~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      +++.|++|++||+.                  .++++....|...|++++|+|+|++|++++.||.|++||+.+......
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence            99999999999985                  244444338889999999999999999999999999999998776321


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce----------------------------------
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----------------------------------  474 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~----------------------------------  474 (667)
                      .+   .....|...|++++|+|++ .+|++++.++.+ +|+.....                                  
T Consensus       243 ~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (377)
T 3dwl_C          243 AL---ITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSF  317 (377)
T ss_dssp             EC---CCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------
T ss_pred             ee---EeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccc
Confidence            00   1122345789999999996 777777665555 77643100                                  


Q ss_pred             ----eeEEe--------------CCCCCCeEEEEEcCCC-C---EEEEEeCCCcEEEEEc
Q 005956          475 ----HKFKG--------------LPKSGSQMSASFTTTG-K---HIISIGDDCRVYVWNY  512 (667)
Q Consensus       475 ----~~~~~--------------~~~~~~v~~v~~spdg-~---~l~sgs~Dg~I~iWd~  512 (667)
                          ..+..              ..|...|+++++.+.. .   .|+|||.||.|+|||+
T Consensus       318 ~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          318 TALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                00110              1278889999975543 3   6999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=2.3e-29  Score=273.94  Aligned_cols=290  Identities=14%  Similarity=0.169  Sum_probs=214.5

Q ss_pred             ceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      .....+|...|++|+|+|.+  +|++|+.||+|+|||+.+++....+   +|...|++++|+|.++++|++|+.|++|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            45567899999999999954  8999999999999999877654433   599999999999977899999999999999


Q ss_pred             EecCCCeEEEecc---cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          377 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       377 wdl~~~~~~~~~~---~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      ||++++.......   +...+.+++|+|++++|++|+.||.|++||+++....        ....|...|++++|+|++.
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--------~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--------NLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--------CSBCCSSCEEEEEECTTCS
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--------EEecccceEEeeeecCCCc
Confidence            9999876654333   3445789999999999999999999999999754322        1234568899999999987


Q ss_pred             eEEEEEeCCCcEEEEECCccee---eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cc-----
Q 005956          454 QRIMITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QK-----  523 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~-----  523 (667)
                      .++++++.|+.|+|||+.....   ......|...|.+++|+|+|++|++++.||.|+|||+.++......  +.     
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~  343 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ  343 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred             eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence            7899999999999999874321   1222347889999999999999999999999999999987654321  11     


Q ss_pred             cCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCC---------CCCCcccCCC-cccCCCCCCCCCCCC
Q 005956          524 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL---------ETAPWIRDSE-RFSLGSWFSNDGPCR  593 (667)
Q Consensus       524 ~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~---------~~~~~~~~~~-~fS~~~~~~~~g~~~  593 (667)
                      ........|+|++..++++..+++..+..  ..........|...         ......+... .|||++.+++.|++.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~  421 (435)
T 4e54_B          344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSC--TPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY  421 (435)
T ss_dssp             SSCCCBCEECSSSSCEEEECCCCTTSCCS--STTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred             cceeEEEEEcCCCCEEEEEEcCCCCeEEE--EecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence            11122357999999999987766543211  11111122233211         1111122232 599999999988754


Q ss_pred             CCCCCCCC
Q 005956          594 GSATWPAE  601 (667)
Q Consensus       594 g~~~w~~~  601 (667)
                      .-..|..+
T Consensus       422 ~i~iW~~~  429 (435)
T 4e54_B          422 HILIWSQQ  429 (435)
T ss_dssp             EEEECCCC
T ss_pred             cEEEEECC
Confidence            44567654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=2.1e-28  Score=265.01  Aligned_cols=244  Identities=17%  Similarity=0.302  Sum_probs=202.0

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+                                           
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-------------------------------------------  178 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-------------------------------------------  178 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------------------------
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-------------------------------------------
Confidence            3457889999999999999999999999999999986                                           


Q ss_pred             ccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                        .+.+..+.+|...|.+++|++ ..|++|+.|+.+++||..... .+..+ .|...+.++.|+| ++.++++++.|+.+
T Consensus       179 --~~~~~~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v  254 (420)
T 4gga_A          179 --QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLV  254 (420)
T ss_dssp             --TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             --CcEEEEEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccc
Confidence              344677889999999998863 389999999999999997643 44444 4999999999999 99999999999999


Q ss_pred             EEEecCCCeE-----EEecccCCceEEEEEeeCCC-EEEE--EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          375 RIWGVCEKRV-----VDWADVRDVISAICYIPDGK-GFIV--GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       375 ~iwdl~~~~~-----~~~~~~~~~v~~v~~spdg~-~l~~--gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      ++||+..++.     .....+...|.+++|+|++. .+++  |+.|+.|++||+.++..... +  ..     ...+.++
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~-~--~~-----~~~v~~~  326 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-V--DA-----HSQVCSI  326 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE-E--EC-----SSCEEEE
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee-e--cc-----ccceeee
Confidence            9999987652     34667888999999999664 5554  34799999999998765432 1  11     2679999


Q ss_pred             EEccCCCeEEEEEe--CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          447 QFSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       447 ~~sp~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      .|+|++ ..+++++  .|+.|+|||+.+........+|...|.+++|+|||++|+||+.|++|+|||+.+..
T Consensus       327 ~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          327 LWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             EEETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             eecCCC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            999997 4555443  78999999988665555555689999999999999999999999999999997654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=9.5e-29  Score=265.81  Aligned_cols=270  Identities=14%  Similarity=0.186  Sum_probs=211.8

Q ss_pred             cEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          224 CIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       224 ~I~~v~fspdg~~-Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ....++++|+... +++++.||.|+||++.....                                         ....+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-----------------------------------------~~~~~   74 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR-----------------------------------------VDKNV   74 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE-----------------------------------------CCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC-----------------------------------------CCCCC
Confidence            4456889998764 44578999999999864211                                         01345


Q ss_pred             eeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCC-------eEeEEee-CCCcEEEEEEeeCCC-CEEEEEecC
Q 005956          303 QELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCN-------QCLNVFD-HHNYVTCVQFNPIDD-NYFISGSID  371 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~-------~~~~~~~-h~~~V~~l~f~p~d~-~~l~sgs~D  371 (667)
                      ..+.+|.+.|++++|+| ++ +|++|+.|++|+|||+.++       +++..+. |...|++++|+| ++ ++|++++.|
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~d  153 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCD  153 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETT
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCC
Confidence            56789999999999999 77 9999999999999999987       4556664 999999999999 65 799999999


Q ss_pred             CeEEEEecCCCeEEE-e--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          372 GKVRIWGVCEKRVVD-W--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       372 g~v~iwdl~~~~~~~-~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      +.|++||+.+++.+. +  ..|...|.+++|+|++++|++++.||.|++||+++..........+.     ...+..+.|
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~  228 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-----GTRPVHAVF  228 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-----SSSCCEEEE
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-----CCcceEEEE
Confidence            999999999988775 4  56889999999999999999999999999999998665432111111     134899999


Q ss_pred             ccCCCeEEEEE---eCCCcEEEEECCccee--eEEeCCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCCc--ccc
Q 005956          449 SRDESQRIMIT---SEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDELCF--PSS  520 (667)
Q Consensus       449 sp~g~~~l~~~---s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~v~~spdg~~l~s-gs~Dg~I~iWd~~~~~~--~~~  520 (667)
                      +|++ .+|+++   +.|+.|++||+.....  ......+...+.+++|+|++++|++ |+.||.|++|++.+++.  ...
T Consensus       229 ~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l  307 (402)
T 2aq5_A          229 VSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL  307 (402)
T ss_dssp             CSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred             cCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee
Confidence            9995 788888   7999999999875322  2223346778999999999999975 55799999999998763  111


Q ss_pred             c--cccCccceeEEccCCcEEEE
Q 005956          521 K--QKNSVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       521 ~--~~~~~~~~~~fs~dg~~lav  541 (667)
                      .  ........+.|+|++.+++.
T Consensus       308 ~~~~~~~~v~~~~~sp~~~~~~s  330 (402)
T 2aq5_A          308 SMFSSKESQRGMGYMPKRGLEVN  330 (402)
T ss_dssp             EEECCSSCCSEEEECCGGGSCGG
T ss_pred             cccccCCcccceEEeccccccee
Confidence            1  22355667789998887653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=272.76  Aligned_cols=287  Identities=13%  Similarity=0.100  Sum_probs=211.1

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcee--------eeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS--------CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      .-...|.+++|||||+++||++.|++|+  |.......        .+.|.|++.      .+.                
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~------~~~----------------   68 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEF------ENK----------------   68 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCC------CCT----------------
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCC------cce----------------
Confidence            3457899999999999999999999999  75543321        233333330      000                


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCC-----cEEEEEEeeCCCCEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDNYF  365 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-----~V~~l~f~p~d~~~l  365 (667)
                      ..++......+..+ +|...|.+++|+|+| .|++++.||+|+|||..+  ++..+.|..     .|.+++|+| ++++|
T Consensus        69 ~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~L  144 (588)
T 2j04_A           69 LDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSI  144 (588)
T ss_dssp             TTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCE
T ss_pred             EEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEE
Confidence            01111111122222 568899999999999 999999999999999654  666666444     499999999 99999


Q ss_pred             EEEecCCeEEEEecCCCeE--------EEe----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeec
Q 005956          366 ISGSIDGKVRIWGVCEKRV--------VDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  433 (667)
Q Consensus       366 ~sgs~Dg~v~iwdl~~~~~--------~~~----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~  433 (667)
                      ++|+.||+|+|||+.++..        ..+    .+|...|.+++|+|||  +++++.|+.+++||+.++........+.
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence            9999999999999998852        223    5577899999999999  8889999999999998876421001111


Q ss_pred             cccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eEEeCCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEE
Q 005956          434 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       434 ~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~--spdg~~l~sgs~Dg~I~iW  510 (667)
                         ..|...|.+++|+  | ..|++++ +++|++||...... .+. .+|...+..++|  +|++..|+++++||+ ++|
T Consensus       223 ---~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          223 ---NASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             ---CCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred             ---ccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence               1234789999999  3 5888887 69999999886655 444 248999999999  999999999999999 999


Q ss_pred             EcCC------CCc-----------------cccccccCccceeEEccCCcEEEEecCC
Q 005956          511 NYDE------LCF-----------------PSSKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       511 d~~~------~~~-----------------~~~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ..+.      +..                 .........+..++|+|||+++|++..-
T Consensus       294 ~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          294 LEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             ESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred             eeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEec
Confidence            8742      110                 0000112234568999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=281.62  Aligned_cols=285  Identities=14%  Similarity=0.152  Sum_probs=203.0

Q ss_pred             eeeccccccEEEEEEcCC------CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          216 QEIQAHKGCIWTLKFSPD------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspd------g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      +.+.+|.+.|++|+|+|+      +.+||+|+.||+|+|||+.+......               .           .  
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~---------------~-----------~--  252 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH---------------V-----------F--  252 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS---------------E-----------E--
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc---------------c-----------c--
Confidence            456788999999999997      57999999999999999975321000               0           0  


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEE--EEeeCCC-CE
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCV--QFNPIDD-NY  364 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l--~f~p~d~-~~  364 (667)
                            .....+...+.+|...|++++|++++.|++|+.||+|++||+.++. +...+ .|...|+++  .|+| ++ .+
T Consensus       253 ------~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~  325 (524)
T 2j04_B          253 ------KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTV  325 (524)
T ss_dssp             ------ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred             ------eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeE
Confidence                  0012456678899999999999987899999999999999998764 44444 599999999  4566 76 89


Q ss_pred             EEEEecCCeEEEEecCCCeEEE-ecccC--CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956          365 FISGSIDGKVRIWGVCEKRVVD-WADVR--DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~-~~~~~--~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~  441 (667)
                      |++|+.|++|+|||+++++... +..+.  ..|.+++|+|+++.+++++.|++|++||++.......   +.    .|..
T Consensus       326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~---l~----gH~~  398 (524)
T 2j04_B          326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP---LV----SRET  398 (524)
T ss_dssp             EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE---EE----ECSS
T ss_pred             EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee---ee----cCCC
Confidence            9999999999999999876432 22332  2478999999999999999999999999988665322   11    2458


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEe---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~---~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      .|++++|+|+| .+|++|+.|++|++||..... ...+.   ..+...+..++|+|+|+.+. ...+-.+..|+......
T Consensus       399 ~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~  476 (524)
T 2j04_B          399 TITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSK  476 (524)
T ss_dssp             CEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC--------
T ss_pred             ceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCcce
Confidence            99999999996 789999999999999975421 11111   01222467999999998553 32232333333333333


Q ss_pred             cccccccCccceeEEccCCc---EEEEecC
Q 005956          518 PSSKQKNSVRSCEHFFSEGV---SVAVQWP  544 (667)
Q Consensus       518 ~~~~~~~~~~~~~~fs~dg~---~lav~w~  544 (667)
                      .........+.+++|+|++.   .+|.+..
T Consensus       477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~  506 (524)
T 2j04_B          477 AKIDAHGINITCTKWNETSAGGKCYAFSNS  506 (524)
T ss_dssp             -----CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred             eeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence            33334445666779999964   7777654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.5e-27  Score=258.39  Aligned_cols=269  Identities=16%  Similarity=0.225  Sum_probs=217.4

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      .++.|+||++ ++||+|. |++|+|||+.++...                                           .+.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------------------------~~~  141 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLL  141 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEE
Confidence            3678999986 4788775 899999999874331                                           123


Q ss_pred             eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~  381 (667)
                      .+.+|...|++|+|+|++ +|++|+.|++|+|||+.+++++..+. |...+.++.++   +.+|++|+.|+.+++||...
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTS
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecc
Confidence            445788899999999999 99999999999999999999998885 88999998884   68999999999999999886


Q ss_pred             Ce--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          382 KR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       382 ~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                      ..  +..+..|...+..+.++|+|+++++++.||.+++|+..........+.   ....+...|.+++|+|.+..+++++
T Consensus       219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~---~~~~~~~~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE---EECCCSSCEEEEEECTTCTTEEEEE
T ss_pred             cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee---eecccCCceeeeeeCCCcccEEEEE
Confidence            44  345678899999999999999999999999999999987664332111   1233458899999999887777765


Q ss_pred             --eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCccccc-cccCccceeEEcc
Q 005956          460 --SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFS  534 (667)
Q Consensus       460 --s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~  534 (667)
                        +.|+.|++||+.+........ +...+.++.|+|+++.|++++  .|+.|+|||+.+++..... .+...+.+++|+|
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp  374 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP  374 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             eecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence              479999999998665544443 456789999999999998875  7899999999998765443 3345667789999


Q ss_pred             CCcEEEEecC
Q 005956          535 EGVSVAVQWP  544 (667)
Q Consensus       535 dg~~lav~w~  544 (667)
                      ||.+||.+..
T Consensus       375 dg~~l~S~s~  384 (420)
T 4gga_A          375 DGATVASAAA  384 (420)
T ss_dssp             TSSCEEEEET
T ss_pred             CCCEEEEEec
Confidence            9998887654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-27  Score=261.95  Aligned_cols=311  Identities=11%  Similarity=-0.011  Sum_probs=212.6

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc---eeeeeeCCCCCcccc----CCCCeEEecccCC--CC----cee
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA---ASCKSFTDDGGFGSN----AKEGKIKFGKKKS--SH----VPV  288 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~----~~~  288 (667)
                      ..+|.+++|+|||++|+++ .++.|++||+.++.   ...............    .............  ..    ...
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999977766 47799999998876   322221111100000    0000000000000  00    000


Q ss_pred             ecCCCcccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCcEEEEecC--CCeEeEEe---eCCCcEEEEEEeeCC
Q 005956          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CNQCLNVF---DHHNYVTCVQFNPID  361 (667)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~--~~~~~~~~---~h~~~V~~l~f~p~d  361 (667)
                      ........ ...+.....+|...|.+++|+|++ +| ++++.|++|+|||+.  +++++..+   .|...|.+++|+| +
T Consensus        83 ~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~  160 (450)
T 2vdu_B           83 SIKRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-D  160 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-T
T ss_pred             cccccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-C
Confidence            00000000 011223345788899999999999 64 899999999999999  88887776   4778999999999 9


Q ss_pred             CCEEEEEecCCeEEEEecCCCeEE-----EecccCCceEEEEEeeC---CCEEEEEecCCcEEEEEecCCcceeeeEeec
Q 005956          362 DNYFISGSIDGKVRIWGVCEKRVV-----DWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFH  433 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~~~-----~~~~~~~~v~~v~~spd---g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~  433 (667)
                      +++|++|+.++.|++|++.++...     .+..|...|++++|+|+   +++|++|+.|+.|++||+.+.......    
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----  236 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW----  236 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE----
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee----
Confidence            999999999999999999887654     45668889999999999   999999999999999999877654321    


Q ss_pred             cccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEeC-----------------------CCCCCeEE
Q 005956          434 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGL-----------------------PKSGSQMS  488 (667)
Q Consensus       434 ~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~-----------------------~~~~~v~~  488 (667)
                        ...|...|++++|+ ++ .+|++++.|+.|++||+...  ...+...                       .....+.+
T Consensus       237 --~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          237 --LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             --CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             --ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence              12345889999999 75 89999999999999998753  3333321                       23457899


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEEc--CCC---CccccccccCccceeEEccCCcEEEEec
Q 005956          489 ASFTTTGKHIISIG-DDCRVYVWNY--DEL---CFPSSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       489 v~~spdg~~l~sgs-~Dg~I~iWd~--~~~---~~~~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      ++|+|++++|++++ .|+.|+||++  ..+   ...........+..+.|+|++.++++..
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence            99999999999999 8999999999  443   2222222225566778999655555443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=7.7e-27  Score=241.09  Aligned_cols=268  Identities=16%  Similarity=0.223  Sum_probs=212.9

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      +++|+||+++ +||+|. |++|+|||+.++...                                           ....
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-------------------------------------------~~~~   62 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLLQ   62 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEEE
Confidence            4679999986 777765 899999999874321                                           1223


Q ss_pred             eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      +.+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...+.++.+   ++.++++++.++.+++|+....
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSS
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCC
Confidence            45788899999999999 99999999999999999999998885 8888887666   5689999999999999998875


Q ss_pred             e--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE--E
Q 005956          383 R--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM--I  458 (667)
Q Consensus       383 ~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~--~  458 (667)
                      .  ......|...+..+.+.++++++++++.||.|++||+++.+.......   ....+...|..+.++|++...+.  +
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~  216 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLATGG  216 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE---EECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred             ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee---eecccCCceEEEEecCCCCcEEEEEe
Confidence            4  335678889999999999999999999999999999987665433111   12234578999999998766554  4


Q ss_pred             EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCccccc-cccCccceeEEccC
Q 005956          459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSE  535 (667)
Q Consensus       459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~d  535 (667)
                      ++.++.|++||.......... .+...+..+.|+|+++++++++  .|+.|+|||+.+++..... .+...+.+++|+||
T Consensus       217 ~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd  295 (318)
T 4ggc_A          217 GTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD  295 (318)
T ss_dssp             CTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             cCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            567889999998754443333 2677899999999999988765  7999999999998765443 34456777899999


Q ss_pred             CcEEEEecC
Q 005956          536 GVSVAVQWP  544 (667)
Q Consensus       536 g~~lav~w~  544 (667)
                      |.+||.+..
T Consensus       296 g~~l~S~s~  304 (318)
T 4ggc_A          296 GATVASAAA  304 (318)
T ss_dssp             SSCEEEEET
T ss_pred             CCEEEEEec
Confidence            998887654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=2.6e-27  Score=257.56  Aligned_cols=232  Identities=21%  Similarity=0.334  Sum_probs=197.4

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      .+|...|+++.|  ++++|++|+.||.|+|||+.+                                             
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~---------------------------------------------  162 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT---------------------------------------------  162 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS---------------------------------------------
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC---------------------------------------------
Confidence            467778999887  789999999999999999986                                             


Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      .+.+..+.+|...|.+++|  ++ +|++|+.||+|++||+.+++++..+. |...|.+++|++   +++++|+.|+.|++
T Consensus       163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~v  237 (435)
T 1p22_A          163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAV  237 (435)
T ss_dssp             CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEE
T ss_pred             CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEE
Confidence            2446778899999999999  45 99999999999999999999988885 889999999964   69999999999999


Q ss_pred             EecCCCeEE----EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          377 WGVCEKRVV----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       377 wdl~~~~~~----~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      ||+.++...    ....|...|.+++|  +++++++|+.||.|++||+++...... +      ..|...|.++.|.+  
T Consensus       238 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~-~------~~~~~~v~~~~~~~--  306 (435)
T 1p22_A          238 WDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT-L------NGHKRGIACLQYRD--  306 (435)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-E------ECCSSCEEEEEEET--
T ss_pred             EeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-E------cCCCCcEEEEEeCC--
Confidence            999887643    45678889999998  788999999999999999998765432 2      22357899999953  


Q ss_pred             CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                       .++++++.||.|++||+.+.........|...|.+++|  ++.+|++|+.||.|++||+.++.
T Consensus       307 -~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          307 -RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             -TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             -CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence             59999999999999998865555455558899999998  78999999999999999997654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=3.5e-27  Score=243.71  Aligned_cols=244  Identities=17%  Similarity=0.280  Sum_probs=198.4

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .+.+|...|++++|+|+|++||+|+.||+|+||++.+                                           
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-------------------------------------------   98 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-------------------------------------------   98 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------------------------------
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-------------------------------------------
Confidence            3457899999999999999999999999999999986                                           


Q ss_pred             ccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                        .+.+..+.+|...+.++.+.+ ..+++++.++.+++|+..... .+..+ .|...+.++.|.+ ++++|++++.|++|
T Consensus        99 --~~~~~~~~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i  174 (318)
T 4ggc_A           99 --QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLV  174 (318)
T ss_dssp             --TEEEEEEECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             --ceeEEEecCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcce
Confidence              344677889999888877653 389999999999999998764 33333 5899999999999 99999999999999


Q ss_pred             EEEecCCCeE-----EEecccCCceEEEEEeeCCCEE---EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          375 RIWGVCEKRV-----VDWADVRDVISAICYIPDGKGF---IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       375 ~iwdl~~~~~-----~~~~~~~~~v~~v~~spdg~~l---~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      ++||+.+++.     .....+...|.+++++|++..+   ++++.++.|++||..........        .+...+..+
T Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--------~~~~~v~~~  246 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--------DAHSQVCSI  246 (318)
T ss_dssp             EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--------ECSSCEEEE
T ss_pred             eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--------cceeeeeee
Confidence            9999987652     3355677889999999976543   34667899999999876553321        123679999


Q ss_pred             EEccCCCeEEEEE-eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          447 QFSRDESQRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       447 ~~sp~g~~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      .|+|++..+++++ +.|+.|+|||+.+.........|...|++++|+|+|++||||+.||+|+|||+.+.
T Consensus       247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9999974444333 37999999998865555555558999999999999999999999999999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2.7e-27  Score=250.48  Aligned_cols=244  Identities=11%  Similarity=0.099  Sum_probs=179.0

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      +++.+|.+.|++++|+|||++||+|+.|+ ++||++.+...                                       
T Consensus        13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~---------------------------------------   52 (355)
T 3vu4_A           13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH---------------------------------------   52 (355)
T ss_dssp             ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE---------------------------------------
T ss_pred             cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce---------------------------------------
Confidence            34578999999999999999999998876 78999875211                                       


Q ss_pred             cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                            ...  .+...+..+++.+++  .+++++.|++|+|||+.+++++..+.+...|.+++|++ +  .++++ .|+.
T Consensus        53 ------~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~-~--~~~~~-~~~~  120 (355)
T 3vu4_A           53 ------IMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR-E--FIVVS-YGDV  120 (355)
T ss_dssp             ------EEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS-S--EEEEE-ETTE
T ss_pred             ------eee--eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC-C--EEEEE-EcCE
Confidence                  111  111246677777766  44678889999999999999999999999999999987 3  34444 4889


Q ss_pred             EEEEecCCC-eEEEecccCCceEEEEEeeCCCEEEE--EecCCcEEEEEecCCcceee--------eEee-ccccCcCCC
Q 005956          374 VRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHFYKASGNDLKLE--------KVDF-HDRKKTSGN  441 (667)
Q Consensus       374 v~iwdl~~~-~~~~~~~~~~~v~~v~~spdg~~l~~--gs~dg~i~l~d~~~~~~~~~--------~~~~-~~~~~~~~~  441 (667)
                      |++||+.++ +.+.....  ....+++++  ..+++  |+.+|.|++||+.+......        .+.. ......|..
T Consensus       121 i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~  196 (355)
T 3vu4_A          121 ISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN  196 (355)
T ss_dssp             EEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS
T ss_pred             EEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC
Confidence            999999987 54432222  445566777  56666  58899999999987541100        0000 111334568


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCc-EEEEECCcceeeEEeC-C-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          442 KITGIQFSRDESQRIMITSEDSK-LRILDGVDVIHKFKGL-P-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~-I~iwd~~~~~~~~~~~-~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      .|++++|+|+| .+|++++.|++ |+|||+.+........ + |...|.+++|+|+|++|++++.|+.|+|||+..+.
T Consensus       197 ~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          197 PIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             ceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            99999999996 89999999998 9999988544433333 2 78999999999999999999999999999997653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=3.8e-28  Score=252.66  Aligned_cols=239  Identities=18%  Similarity=0.208  Sum_probs=183.2

Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEee-CCCCEEEEEecCCeEEEE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p-~d~~~l~sgs~Dg~v~iw  377 (667)
                      ..+.+|.+.|++++|+|++ +|++|+.|++|+|||+.++.  ++..+ .|...|++++|+| .++++|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3456899999999999999 99999999999999998875  34445 4999999999976 248899999999999999


Q ss_pred             ecCCCe---EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          378 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       378 dl~~~~---~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      |+.+++   ...+..|...|++++|+|+  |.+|++|+.||.|++||++......    .......|...|.+++|+|++
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE----VKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----ECCBTTSSSSCBCCCEECCCC
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----eeeeeccccCCcceEEEcccc
Confidence            999863   3346678899999999998  7899999999999999998653211    111133456789999999973


Q ss_pred             ----------------CeEEEEEeCCCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEE
Q 005956          453 ----------------SQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV  509 (667)
Q Consensus       453 ----------------~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~Dg~I~i  509 (667)
                                      ..+|++++.|+.|++||+...   ........|...|.+++|+|++    .+|++++.|++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                            258999999999999997632   2222334588999999999987    89999999999999


Q ss_pred             EEcCCCCc-----cccccccCccceeEEccCCcEEEEecCC
Q 005956          510 WNYDELCF-----PSSKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       510 Wd~~~~~~-----~~~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      |++.+...     .........+..++|+|+|.+||++..+
T Consensus       243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D  283 (316)
T 3bg1_A          243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD  283 (316)
T ss_dssp             EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS
T ss_pred             EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence            99986321     1111223455667899999888876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.2e-27  Score=260.22  Aligned_cols=244  Identities=23%  Similarity=0.434  Sum_probs=196.8

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ....+.+.+|.+.|++++|  ++++|++|+.||+|+|||+.++                                     
T Consensus       163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~-------------------------------------  203 (435)
T 1p22_A          163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG-------------------------------------  203 (435)
T ss_dssp             CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC-------------------------------------
T ss_pred             CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC-------------------------------------
Confidence            3455678899999999999  7889999999999999999863                                     


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEe---EEe-eCCCcEEEEEEeeCCCCEEEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~---~~~-~h~~~V~~l~f~p~d~~~l~s  367 (667)
                              +.+..+.+|...|.+++|++ +.|++|+.|++|++||+.++...   ..+ .|...|.+++|   +++++++
T Consensus       204 --------~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s  271 (435)
T 1p22_A          204 --------EMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVS  271 (435)
T ss_dssp             --------CEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEE
T ss_pred             --------cEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEE
Confidence                    44677789999999999974 49999999999999999987655   333 48899999999   5789999


Q ss_pred             EecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      |+.|+.|++||+.+++.+. +..|...|.++++  +++.+++|+.||.|++||++++.....       ...|...|+++
T Consensus       272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~~  342 (435)
T 1p22_A          272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-------LEGHEELVRCI  342 (435)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-------ECCCSSCEEEE
T ss_pred             EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE-------EeCCcCcEEEE
Confidence            9999999999999988765 5668889999988  478999999999999999998765432       22345789999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcce---------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      +|  + +.+|++++.||.|++||+....         .......|...|.+++|  ++++|++|+.||.|+|||+.+...
T Consensus       343 ~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          343 RF--D-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             EC--C-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred             Ee--c-CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence            99  3 3689999999999999965321         33333458889999999  788999999999999999988754


Q ss_pred             ccc
Q 005956          518 PSS  520 (667)
Q Consensus       518 ~~~  520 (667)
                      ...
T Consensus       418 ~~~  420 (435)
T 1p22_A          418 AQA  420 (435)
T ss_dssp             ---
T ss_pred             ccc
Confidence            433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.3e-27  Score=249.82  Aligned_cols=240  Identities=18%  Similarity=0.210  Sum_probs=194.9

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC--CCeEeEEee-CCCcEEEEEEeeCC--CCEEEEEecCCe
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFD-HHNYVTCVQFNPID--DNYFISGSIDGK  373 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~--~~~~~~~~~-h~~~V~~l~f~p~d--~~~l~sgs~Dg~  373 (667)
                      +++..+.+|...|++++|+|++ +|++++.|++|+|||+.  +++.+..+. |...|++++|+| +  +++|++|+.|+.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCE
Confidence            3467788999999999999999 99999999999999998  556666664 999999999987 5  899999999999


Q ss_pred             EEEEecCCCe---EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          374 VRIWGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       374 v~iwdl~~~~---~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      |++||+.+++   ......|...|.+++|+|+  +++|++++.||.|++||+......... .+    ..+...|++++|
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~----~~~~~~v~~~~~  155 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-II----DAHAIGVNSASW  155 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EE----ECCTTCEEEEEE
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-Ee----cCCCCceEEEEE
Confidence            9999999985   3346668899999999999  999999999999999999877543321 11    223578999999


Q ss_pred             ccC------------CCeEEEEEeCCCcEEEEECCcc----eeeEEeCCCCCCeEEEEEcCC---CCEEEEEeCCCcEEE
Q 005956          449 SRD------------ESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYV  509 (667)
Q Consensus       449 sp~------------g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~spd---g~~l~sgs~Dg~I~i  509 (667)
                      +|.            ++.++++++.|+.|++||+...    ........|...|.+++|+|+   +++|++++.||.|+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence            994            2489999999999999997532    122233458899999999999   899999999999999


Q ss_pred             EEcCCCCcc----cc--ccccCccceeEEccCCcEEEEecCC
Q 005956          510 WNYDELCFP----SS--KQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       510 Wd~~~~~~~----~~--~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ||+.++...    ..  .........+.|+|+|.+|+++...
T Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  277 (379)
T 3jrp_A          236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  277 (379)
T ss_dssp             EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred             EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence            999987421    11  1244556778999999999987653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.3e-28  Score=261.09  Aligned_cols=252  Identities=10%  Similarity=0.130  Sum_probs=196.9

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcC---CCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT---SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      +|.+.|++|+|+|++++|++|+.||.|+|||+.   ++......                                    
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------------------------  152 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFL------------------------------------  152 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEE------------------------------------
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecc------------------------------------
Confidence            599999999999999999999999999999995   22111000                                    


Q ss_pred             ccCCcceeee--c--cccceEEEE--ecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEE
Q 005956          297 IEESPLQELH--G--HKGDVLDLA--WSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       297 ~~~~~~~~l~--g--h~~~V~~l~--~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~  366 (667)
                       ....+..+.  .  +...+.++.  +++++ +|++++.|++|++||+.+++++..+.   |...|++++|+| ++++|+
T Consensus       153 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~  230 (437)
T 3gre_A          153 -NCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLI  230 (437)
T ss_dssp             -EEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEE
T ss_pred             -ccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEE
Confidence             001122221  1  566778887  56778 99999999999999999999988885   788999999999 899999


Q ss_pred             EEecCCeEEEEecCCCeEEEec--ccCCceEEEEEee----CCCEEEEEecCCcEEEEEecCCcceeeeEeecc------
Q 005956          367 SGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIP----DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD------  434 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~~~--~~~~~v~~v~~sp----dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~------  434 (667)
                      +|+.||.|++||+++++.+...  .+...|++++|+|    ++.+|++|+.||.|++||+++............      
T Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (437)
T 3gre_A          231 LGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH  310 (437)
T ss_dssp             EEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG
T ss_pred             EEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce
Confidence            9999999999999999887633  6777899996654    678999999999999999987765433211000      


Q ss_pred             -----------cc--CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEeC-------------------
Q 005956          435 -----------RK--KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGL-------------------  480 (667)
Q Consensus       435 -----------~~--~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~-------------------  480 (667)
                                 ..  ..+...|++++|+ ++ .+|++++.|+.|++||+.+.  ...+.++                   
T Consensus       311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (437)
T 3gre_A          311 FLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTML  388 (437)
T ss_dssp             GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEE
T ss_pred             ecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEE
Confidence                       00  1155779999999 54 89999999999999998743  2333321                   


Q ss_pred             ----------------CCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005956          481 ----------------PKSGSQMSASFTTT--GKHIISIGDDCRVYVWN  511 (667)
Q Consensus       481 ----------------~~~~~v~~v~~spd--g~~l~sgs~Dg~I~iWd  511 (667)
                                      .|...|.+++|+++  +.+|++|+.||.|+||+
T Consensus       389 ~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          389 LRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                            17889999999988  78999999999999995

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.7e-28  Score=254.15  Aligned_cols=234  Identities=12%  Similarity=0.135  Sum_probs=180.3

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeec
Q 005956          228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG  307 (667)
Q Consensus       228 v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  307 (667)
                      ..+.+++.+|++|+.||+|++||+.++.                                             .+..+. 
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~---------------------------------------------~~~~~~-   75 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSK---------------------------------------------TITTIT-   75 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSS---------------------------------------------CEEEEE-
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCc---------------------------------------------EEEEEe-
Confidence            3455688999999999999999998632                                             233333 


Q ss_pred             cccceEEEEecCCCeEEEEeCCCcEEEEecC---------CCeEeEEee--CCCcEEEEEEee-CCCCEEEEEecCCeEE
Q 005956          308 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG---------CNQCLNVFD--HHNYVTCVQFNP-IDDNYFISGSIDGKVR  375 (667)
Q Consensus       308 h~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~---------~~~~~~~~~--h~~~V~~l~f~p-~d~~~l~sgs~Dg~v~  375 (667)
                       ...|.++.|+|+  +++++.|++|++|+..         +++.+..+.  |...|.+++|+| .++++|++++.|++|+
T Consensus        76 -~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~  152 (343)
T 3lrv_A           76 -TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG  152 (343)
T ss_dssp             -EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred             -cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence             456778888887  9999999999999665         555555543  668899999998 3578999999999999


Q ss_pred             EEecCCCeEEEec--ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          376 IWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       376 iwdl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      +||+.+++.....  .+...+++++|+|+|.+|++|+.||.|++||+++.......+..     .|..+|++++|+|+| 
T Consensus       153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~fs~~g-  226 (343)
T 3lrv_A          153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----DEEAKIKEVKFADNG-  226 (343)
T ss_dssp             EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----CTTSCEEEEEECTTS-
T ss_pred             EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----cCCCCEEEEEEeCCC-
Confidence            9999998876533  44557999999999999999999999999999987764222221     246899999999996 


Q ss_pred             eEEEEEeCCCcEEEEECCcceee--EEeC-CCCCCe--EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCc
Q 005956          454 QRIMITSEDSKLRILDGVDVIHK--FKGL-PKSGSQ--MSASFTTTGKHIISIGD-DCRVYVWNYDELCF  517 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~~~~--~~~~-~~~~~v--~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~  517 (667)
                      .+|++++ ++.|++||+++....  +... .+...+  .+++|+|+|++|++++. |+.|+||++.....
T Consensus       227 ~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          227 YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence            7888888 559999998754322  2210 012222  46999999999999998 99999999976643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=2.6e-27  Score=247.53  Aligned_cols=243  Identities=13%  Similarity=0.088  Sum_probs=200.3

Q ss_pred             eeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEc-CCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV-TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ..+.+|.+.|++++|+|+++ +|++|+.||.|++||+ .+.                                       
T Consensus        50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------------------------------------   90 (342)
T 1yfq_A           50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---------------------------------------   90 (342)
T ss_dssp             EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---------------------------------------
T ss_pred             eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---------------------------------------
Confidence            34458999999999999999 9999999999999999 752                                       


Q ss_pred             cccccCCcceeeec--cccceEEEEecCCC-eEEEEeCCCcEEEEecCC---------CeEeEEeeCCCcEEEEEEeeCC
Q 005956          294 VFQIEESPLQELHG--HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC---------NQCLNVFDHHNYVTCVQFNPID  361 (667)
Q Consensus       294 ~~~~~~~~~~~l~g--h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~---------~~~~~~~~h~~~V~~l~f~p~d  361 (667)
                             ....+.+  |...|.+++|+| + .|++++.|+.|++||+.+         ++++..+.|...|.+++|+| +
T Consensus        91 -------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  161 (342)
T 1yfq_A           91 -------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-S  161 (342)
T ss_dssp             -------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-S
T ss_pred             -------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-C
Confidence                   2355667  999999999999 6 999999999999999988         77777778999999999998 5


Q ss_pred             CCEEEEEecCCeEEEEecCC-CeE---EEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCC-----cceeeeEe
Q 005956          362 DNYFISGSIDGKVRIWGVCE-KRV---VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGN-----DLKLEKVD  431 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~-~~~---~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~-----~~~~~~~~  431 (667)
                      +  +++++.|+.|++||+++ +..   .....+...+.+++|+| +++++++++.+|.+++|++...     ......+.
T Consensus       162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  239 (342)
T 1yfq_A          162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence            4  99999999999999988 442   24556788899999999 9999999999999999999876     12222222


Q ss_pred             eccc---cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCC-CCCeEEEEEcCCCCEEEEEeCCCc-
Q 005956          432 FHDR---KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGKHIISIGDDCR-  506 (667)
Q Consensus       432 ~~~~---~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~spdg~~l~sgs~Dg~-  506 (667)
                      .+..   ...+...|++++|+|++ .+|++++.||.|++||+.+.........| ...|.+++  |++++|++++.||. 
T Consensus       240 ~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~  316 (342)
T 1yfq_A          240 CHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF  316 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred             cccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence            2211   01234589999999996 78999999999999999866555555556 88999999  99999999999998 


Q ss_pred             EEEEE
Q 005956          507 VYVWN  511 (667)
Q Consensus       507 I~iWd  511 (667)
                      .+.|.
T Consensus       317 ~~~~~  321 (342)
T 1yfq_A          317 KTNAA  321 (342)
T ss_dssp             HHCSS
T ss_pred             ccccc
Confidence            55444

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=4.3e-28  Score=260.33  Aligned_cols=255  Identities=15%  Similarity=0.149  Sum_probs=176.5

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      ...|.+.+....+++++.+||+|+.|++|+|||+.++....                                       
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~---------------------------------------  125 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT---------------------------------------  125 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEE---------------------------------------
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce---------------------------------------
Confidence            34577777777888899999999999999999998643221                                       


Q ss_pred             cCCcceeeeccccceEEEEecC--------CC-eEEEEeCCCcEEEEecCCCeEe-EEeeCCCcEEEEEEeeCCCCEEEE
Q 005956          298 EESPLQELHGHKGDVLDLAWSN--------SN-YLLSCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~--------~~-~l~s~s~Dg~I~iWd~~~~~~~-~~~~h~~~V~~l~f~p~d~~~l~s  367 (667)
                       ..++..+.||.+.|++++|+|        ++ +|++++.|++|+|||+.++.++ ..+.|..+|.+++|+|.+.++|++
T Consensus       126 -~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  204 (393)
T 4gq1_A          126 -QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIV  204 (393)
T ss_dssp             -EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred             -eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEe
Confidence             123455789999999999987        66 8999999999999999877654 455799999999999944468999


Q ss_pred             EecCCeEEEEecCCCeEEE--------------------------ecccCCceEEEEEe-eCCCEEEEEecCCcEEEEEe
Q 005956          368 GSIDGKVRIWGVCEKRVVD--------------------------WADVRDVISAICYI-PDGKGFIVGSITGTCHFYKA  420 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~--------------------------~~~~~~~v~~v~~s-pdg~~l~~gs~dg~i~l~d~  420 (667)
                      |+.|++|++||+.+++...                          ...+...+.++.|+ |+|+.|++++.|+.+++||+
T Consensus       205 ~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~  284 (393)
T 4gq1_A          205 GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNL  284 (393)
T ss_dssp             EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred             cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEEC
Confidence            9999999999998765321                          12455678889987 79999999999999999999


Q ss_pred             cCCcceeeeEeecc-----------ccCcCCCCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEE
Q 005956          421 SGNDLKLEKVDFHD-----------RKKTSGNKITGIQFSR-DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMS  488 (667)
Q Consensus       421 ~~~~~~~~~~~~~~-----------~~~~~~~~I~~l~~sp-~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~  488 (667)
                      ..............           .............|+| .+..++++++.||.|+|||............|...|.+
T Consensus       285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~s  364 (393)
T 4gq1_A          285 FANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVD  364 (393)
T ss_dssp             -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred             ccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEE
Confidence            76543322100000           0000111222333444 34457778889999999998754433333347889999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          489 ASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       489 v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ++|+|||++||+++++| +.+|.+.
T Consensus       365 vafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          365 FCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            99999999999999766 6666654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=6.1e-27  Score=254.39  Aligned_cols=288  Identities=14%  Similarity=0.298  Sum_probs=197.9

Q ss_pred             cceeecccc------------ccEEEEEEcCCC--CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEec
Q 005956          214 TSQEIQAHK------------GCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG  279 (667)
Q Consensus       214 ~~~~l~~H~------------~~I~~v~fspdg--~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (667)
                      ....+++|.            +.|++++|+|++  .+|++++.||+|+||++.+.......+.....      .+.+...
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~------~g~~~~~  146 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEE------DGRYRDP  146 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------------C
T ss_pred             EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCc------cccccCc
Confidence            456677898            889999999998  89999999999999999864432221111110      0000000


Q ss_pred             cc-CCCCceeecCCCcccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecC-CCeEeEEe--------e
Q 005956          280 KK-KSSHVPVVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLNVF--------D  347 (667)
Q Consensus       280 ~~-~~~~~~~~~~~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~-~~~~~~~~--------~  347 (667)
                      .. .........+. .+.....+...+ .+|...|.+++|+|++ +|++| .|++|++||+. .++++..+        .
T Consensus       147 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  224 (447)
T 3dw8_B          147 TTVTTLRVPVFRPM-DLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE  224 (447)
T ss_dssp             CCCCSCCCCEEEEE-EEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGG
T ss_pred             ccccceEeccccch-heeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccc
Confidence            00 00000000000 001111223333 6899999999999999 88888 89999999999 45555543        4


Q ss_pred             CCCcEEEEEEeeCCC-CEEEEEecCCeEEEEecCCCeE-----EEecccCC------------ceEEEEEeeCCCEEEEE
Q 005956          348 HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRV-----VDWADVRD------------VISAICYIPDGKGFIVG  409 (667)
Q Consensus       348 h~~~V~~l~f~p~d~-~~l~sgs~Dg~v~iwdl~~~~~-----~~~~~~~~------------~v~~v~~spdg~~l~~g  409 (667)
                      |...|++++|+| ++ ++|++|+.|+.|++||+++++.     ..+..+..            .|.+++|+|+|++|+++
T Consensus       225 ~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  303 (447)
T 3dw8_B          225 LTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR  303 (447)
T ss_dssp             CCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred             cCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe
Confidence            889999999999 76 9999999999999999998875     34455554            89999999999999999


Q ss_pred             ecCCcEEEEEecCCcceeeeEeeccccCc------CCC---CeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eEEe
Q 005956          410 SITGTCHFYKASGNDLKLEKVDFHDRKKT------SGN---KITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKG  479 (667)
Q Consensus       410 s~dg~i~l~d~~~~~~~~~~~~~~~~~~~------~~~---~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~  479 (667)
                      +. |.|++||++........+..+.....      ...   .+..++|+|++ .+|++++.||.|++||+..... .+..
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~  381 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEA  381 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEEC
T ss_pred             eC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeee
Confidence            99 99999999863333333332221000      001   13459999996 7899999999999999874322 1111


Q ss_pred             -------------------------------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          480 -------------------------------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       480 -------------------------------~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                                                     ......|..++|+|++.+||+++.++ +++|.-+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          382 SRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                                           12345688999999999999998765 8888743

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=6.7e-27  Score=250.02  Aligned_cols=329  Identities=15%  Similarity=0.163  Sum_probs=213.7

Q ss_pred             CCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEee--------------CCCcEEEEEEeeCCC
Q 005956          299 ESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------HHNYVTCVQFNPIDD  362 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--------------h~~~V~~l~f~p~d~  362 (667)
                      .+....+.+|.+.|++++|+| ++ +|++++.||+|++||+.++.....+.              |...|.+++|+|.++
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            345667789999999999999 88 99999999999999999876554442              889999999999777


Q ss_pred             CEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeC---CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          363 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spd---g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      .+|++++.|+.|++||+.+++......+...+.+++++|.   +.++++++.+|.|++||+++......       ...|
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------~~~~  185 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI-------LQGH  185 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-------ECCC
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-------ecCC
Confidence            8999999999999999999998887788899999999994   45999999999999999987655432       2234


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce---eeEE-------------eCCCCCCeEEEEEcCCCCEEEEEeC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKFK-------------GLPKSGSQMSASFTTTGKHIISIGD  503 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~---~~~~-------------~~~~~~~v~~v~~spdg~~l~sgs~  503 (667)
                      ...|++++|+|++..++++++.||.|++||+....   ..+.             ...|...|.+++|+|++++|++++.
T Consensus       186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence            58899999999975579999999999999986432   1111             0347889999999999999999999


Q ss_pred             CCcEEEEEcCCCCccccccc-------cCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccC
Q 005956          504 DCRVYVWNYDELCFPSSKQK-------NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRD  576 (667)
Q Consensus       504 Dg~I~iWd~~~~~~~~~~~~-------~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  576 (667)
                      ||.|++||+.++........       ..........+.+.+++.+...   .+.++.......    -..+..+...+.
T Consensus       266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~~----~~~~~~~~~~v~  338 (408)
T 4a11_B          266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQ----ITMLKGHYKTVD  338 (408)
T ss_dssp             TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT---EEEEEETTTCCE----EEEECCCSSCEE
T ss_pred             CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC---EEEEEECcCCcc----eeeeccCCCeEE
Confidence            99999999998765432211       1111111222233344433322   122221111100    011223334456


Q ss_pred             CCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeE
Q 005956          577 SERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMI  655 (667)
Q Consensus       577 ~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~i  655 (667)
                      ...|+|++.+++.++..|. ..|..+.....  +.. ..  .         ...      ....+.......+++.+|.|
T Consensus       339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~-~~--~---------~~~------~~~~~~~~~~~~~~~~~~~~  398 (408)
T 4a11_B          339 CCVFQSNFQELYSGSRDCNILAWVPSLYEPV--PDD-DE--T---------TTK------SQLNPAFEDAWSSSDEEGGT  398 (408)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------------
T ss_pred             EEEEcCCCCEEEEECCCCeEEEEeCCCCCcc--CCC-Cc--e---------Eec------cccccccceeecccCccCce
Confidence            6789999999998887776 45755432211  000 00  0         000      12223344556789999999


Q ss_pred             eeeeec
Q 005956          656 KTFHNY  661 (667)
Q Consensus       656 r~f~~~  661 (667)
                      ++|.|.
T Consensus       399 ~~W~~~  404 (408)
T 4a11_B          399 SAWSHP  404 (408)
T ss_dssp             ------
T ss_pred             eecCCc
Confidence            999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=5.3e-26  Score=247.81  Aligned_cols=273  Identities=16%  Similarity=0.290  Sum_probs=214.9

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC----------CccccCCCCeEEeccc
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG----------GFGSNAKEGKIKFGKK  281 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~  281 (667)
                      ....+.+.+|.+.|++++|+  +.+|++|+.||+|++||+.++...........          .++....++.+.+++.
T Consensus       149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred             CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEEC
Confidence            34456788999999999998  56999999999999999987654333221111          2223334444444433


Q ss_pred             CCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEee
Q 005956          282 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP  359 (667)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p  359 (667)
                      .               ..+.+..+.+|...|.+++|  ++ +|++++.|+.|++||+.+++++..+. |...|.++.|  
T Consensus       227 ~---------------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--  287 (445)
T 2ovr_B          227 E---------------TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--  287 (445)
T ss_dssp             S---------------SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--
T ss_pred             C---------------CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--
Confidence            2               23456788899999999999  45 89999999999999999999998886 8899999999  


Q ss_pred             CCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956          360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (667)
Q Consensus       360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~  438 (667)
                       ++.++++|+.|+.|++||+.+++.+. +..+...+.++.+  +++.+++|+.||.|++||+++++.... +  .. ...
T Consensus       288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~-~--~~-~~~  360 (445)
T 2ovr_B          288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT-L--QG-PNK  360 (445)
T ss_dssp             -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-E--CS-TTS
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE-E--cc-CCC
Confidence             67899999999999999999988765 5667777887766  577999999999999999987665332 1  11 223


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe-----CCCCCCeEEEEEcCCCCEEEEEeCCCc----EEE
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCR----VYV  509 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~v~~spdg~~l~sgs~Dg~----I~i  509 (667)
                      +...|++++|++   .+|++++.||.|++||+.+.......     ..+...|.+++|+|++.+|++|+.||.    |.|
T Consensus       361 ~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v  437 (445)
T 2ovr_B          361 HQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV  437 (445)
T ss_dssp             CSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred             CCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEE
Confidence            568899999964   58999999999999998754332222     347788999999999999999999998    999


Q ss_pred             EEcCCC
Q 005956          510 WNYDEL  515 (667)
Q Consensus       510 Wd~~~~  515 (667)
                      ||+...
T Consensus       438 ~df~~~  443 (445)
T 2ovr_B          438 LDFDVD  443 (445)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=4.9e-26  Score=246.46  Aligned_cols=280  Identities=12%  Similarity=0.051  Sum_probs=221.9

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      +.+..|. .+.+++|+|++.++++++.|+.|++||+.++.....                                    
T Consensus       117 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------------------------  159 (433)
T 3bws_A          117 SRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL------------------------------------  159 (433)
T ss_dssp             EEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE------------------------------------
T ss_pred             EEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee------------------------------------
Confidence            3444443 456999999888888888999999999986433210                                    


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEE-EEecCC
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI-SGSIDG  372 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~-sgs~Dg  372 (667)
                          .+...+.+|...|.+++|++++ ++++++.|+.|++||+.+++.+..+. |...+.+++|+| ++++++ +++.|+
T Consensus       160 ----~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~  234 (433)
T 3bws_A          160 ----SPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISE  234 (433)
T ss_dssp             ----CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTT
T ss_pred             ----cCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCC
Confidence                1122456899999999999999 88899999999999999999888875 788999999999 787775 555799


Q ss_pred             eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe--------cCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs--------~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      .|++||+.+++.+........+.+++|+|+|+.+++++        .||.|++||+.+.+.... +..       ...+.
T Consensus       235 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~-------~~~~~  306 (433)
T 3bws_A          235 DISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGP-------PGNKR  306 (433)
T ss_dssp             EEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEE-------EECEE
T ss_pred             cEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccC-------CCCcc
Confidence            99999999999887777777899999999999999988        488999999987754332 111       24688


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC---------------CCcEEE
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---------------DCRVYV  509 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---------------Dg~I~i  509 (667)
                      +++|+|++..++++++.++.|++||+.......... +...+.+++|+|+|++|++++.               ||.|++
T Consensus       307 ~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~  385 (433)
T 3bws_A          307 HIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYV  385 (433)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEE
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEE
Confidence            999999976677778999999999987544333322 5677999999999999998876               579999


Q ss_pred             EEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956          510 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       510 Wd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      ||+.+++.............+.|+|+|..|+++...+
T Consensus       386 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d  422 (433)
T 3bws_A          386 IDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD  422 (433)
T ss_dssp             EETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTT
T ss_pred             EECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCC
Confidence            9999887655444444566789999999998876544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3.5e-26  Score=240.63  Aligned_cols=249  Identities=13%  Similarity=0.217  Sum_probs=200.6

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ..+.+|.+.|++++|+|++++|++|+.||.|+|||+.+..                                        
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----------------------------------------  119 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ----------------------------------------  119 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----------------------------------------
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC----------------------------------------
Confidence            5677899999999999999999999999999999998632                                        


Q ss_pred             cccCCcceeeeccccceEEEEe--cCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          296 QIEESPLQELHGHKGDVLDLAW--SNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~--s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                            ...+.+|...|.+++|  ++++ +|++++.|++|++||+.+++++..+.....+.++.+.+   ..+++++.++
T Consensus       120 ------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  190 (368)
T 3mmy_A          120 ------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY---PMAVVATAER  190 (368)
T ss_dssp             ------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---TEEEEEEGGG
T ss_pred             ------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---CeeEEEeCCC
Confidence                  2335679999999999  8888 89999999999999999999999998778888888864   5888899999


Q ss_pred             eEEEEecCCCeEEE---ecccCCceEEEEEeeCCCE----EEEEecCCcEEEEEecCCcceeeeEeecccc--------C
Q 005956          373 KVRIWGVCEKRVVD---WADVRDVISAICYIPDGKG----FIVGSITGTCHFYKASGNDLKLEKVDFHDRK--------K  437 (667)
Q Consensus       373 ~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg~~----l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~--------~  437 (667)
                      .+++|++.......   .......+.++++.+++..    +++++.||.|++||++..........+..+.        .
T Consensus       191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred             cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence            99999998765432   2234556777887776655    9999999999999998764311111222211        1


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      .+...|++++|+|++ .+|++++.||.|++||+.+.........|...|.+++|+|+|++|++++.|+..+.|++-+
T Consensus       271 ~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             ccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence            122379999999996 8999999999999999987665555556889999999999999999999998665555443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=1.5e-25  Score=233.15  Aligned_cols=213  Identities=13%  Similarity=0.188  Sum_probs=175.2

Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC----eEeEEe-eCCCcEEEEEEeeC-CCCEEEEEecCCeEE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVR  375 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~----~~~~~~-~h~~~V~~l~f~p~-d~~~l~sgs~Dg~v~  375 (667)
                      ..+.+|.+.|++++|+|++ +|++++.||+|++||+.++    +.+..+ .|...|++++|+|. ++++|++|+.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            4567999999999999999 9999999999999999876    355555 49999999999984 489999999999999


Q ss_pred             EEecCCCe----------EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceee-eEe-----eccccC
Q 005956          376 IWGVCEKR----------VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE-KVD-----FHDRKK  437 (667)
Q Consensus       376 iwdl~~~~----------~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~-~~~-----~~~~~~  437 (667)
                      +||+.+++          ......|...|.+++|+|+  +++|++++.||.|++||+++...... ...     ......
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99998862          3456678999999999999  99999999999999999987664332 110     111122


Q ss_pred             cCCCCeEEEEEccC--CCeEEEEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEE
Q 005956          438 TSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV  509 (667)
Q Consensus       438 ~~~~~I~~l~~sp~--g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg----~~l~sgs~Dg~I~i  509 (667)
                      .+...+.++.|+|+  +..++++++.++.+.+|+.....  .......|...|.+++|+|++    ++|++++.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            45678999999997  34799999999999888865432  233444588999999999998    89999999999999


Q ss_pred             EEcCCC
Q 005956          510 WNYDEL  515 (667)
Q Consensus       510 Wd~~~~  515 (667)
                      ||+..+
T Consensus       245 wd~~~~  250 (351)
T 3f3f_A          245 FKITEK  250 (351)
T ss_dssp             EEEEEC
T ss_pred             EeCCCC
Confidence            999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.94  E-value=3.7e-26  Score=239.86  Aligned_cols=293  Identities=10%  Similarity=0.140  Sum_probs=211.4

Q ss_pred             ceeeeccccceEEEEecCCC-eE-EEEeC---CCcEEEEecCCCeEeEE--eeCCCcEEEEEEeeCC---CCEEEEEecC
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YL-LSCSM---DKTVRMWQVGCNQCLNV--FDHHNYVTCVQFNPID---DNYFISGSID  371 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l-~s~s~---Dg~I~iWd~~~~~~~~~--~~h~~~V~~l~f~p~d---~~~l~sgs~D  371 (667)
                      ...+.+|...|.+++|+|++ .+ ++++.   |++|+|||+.+++....  +.|...|.+++|+| +   +++|++|+.|
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA-TSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT-CCTTTCCEEEEETT
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC-CCCCCceEEEecCC
Confidence            34557899999999999988 44 56665   99999999999876544  46999999999999 6   6999999999


Q ss_pred             CeEEEEecCCCe--EEEecccCCceEEEEE------eeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956          372 GKVRIWGVCEKR--VVDWADVRDVISAICY------IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       372 g~v~iwdl~~~~--~~~~~~~~~~v~~v~~------spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                      +.|++||+.+++  ...+..|...|.+++|      +|+++.|++++.||.|++||+.+.......+..  +.......+
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~v  167 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP--VQGENKRDC  167 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC--CTTSCCCCE
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc--cCCCCCCce
Confidence            999999999876  4456788999999954      689999999999999999999987633332222  122224578


Q ss_pred             EEEE----EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCC
Q 005956          444 TGIQ----FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       444 ~~l~----~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      .+++    |+|++ .++++++.|+.|++||+........ ..+...+.+++|+|   ++.+|++++.||.|++||+.++.
T Consensus       168 ~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          168 WTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             EEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            9998    67775 8999999999999999986554333 23788999999999   99999999999999999998765


Q ss_pred             ccccc------cccCccceeEEccCCc-EEEEecCCCCcccccccCCCCCC---------------cCccCcCCCCCCcc
Q 005956          517 FPSSK------QKNSVRSCEHFFSEGV-SVAVQWPGIGTEQKSLCSSSLRD---------------CSQKWDNLETAPWI  574 (667)
Q Consensus       517 ~~~~~------~~~~~~~~~~fs~dg~-~lav~w~~~~~~~~~~~~~~~~~---------------~~~~w~~~~~~~~~  574 (667)
                      .....      .....+..+.|+|++. +++++.....  ++++.......               +......+..+...
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  323 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG--LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP  323 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE--EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc--EEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence            43321      3455667789999998 6666544321  22211110000               00001112223334


Q ss_pred             cCCCcccCCCCCCC-CCCCCCC-CCCCCC
Q 005956          575 RDSERFSLGSWFSN-DGPCRGS-ATWPAE  601 (667)
Q Consensus       575 ~~~~~fS~~~~~~~-~g~~~g~-~~w~~~  601 (667)
                      .....|+|++.+++ .++..|. ..|.-.
T Consensus       324 v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          324 ISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             eeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            55678999999887 5665554 446544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.5e-25  Score=243.06  Aligned_cols=249  Identities=12%  Similarity=0.058  Sum_probs=193.0

Q ss_pred             eeeccccccEEEEEEcCCCCEE-EEEECCCcEEEEEcC--CCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~L-atgs~Dg~I~vWdv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ....+|.+.|++++|+|+|++| |+|+.||.|+|||+.  ++                                      
T Consensus        96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------------------------------------  137 (450)
T 2vdu_B           96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------------------------------------  137 (450)
T ss_dssp             ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------------------------------------
T ss_pred             CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------------------------------------
Confidence            3456899999999999999996 899999999999998  42                                      


Q ss_pred             CcccccCCcceeee--ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE----Ee-eCCCcEEEEEEeeCC---
Q 005956          293 EVFQIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----VF-DHHNYVTCVQFNPID---  361 (667)
Q Consensus       293 ~~~~~~~~~~~~l~--gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~----~~-~h~~~V~~l~f~p~d---  361 (667)
                             ..+..+.  .|...|.+++|+|++ +|++++.|+.|++|++.+++...    .+ .|...|++++|+| +   
T Consensus       138 -------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~  209 (450)
T 2vdu_B          138 -------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDG  209 (450)
T ss_dssp             -------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTS
T ss_pred             -------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCC
Confidence                   2344444  567899999999999 99999999999999998876553    33 4899999999999 8   


Q ss_pred             CCEEEEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc----
Q 005956          362 DNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR----  435 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~----  435 (667)
                      +++|++|+.|++|++||+.+++.+.  ...|...|.+++|+ ++++|++|+.|+.|++||+.+++.... +.....    
T Consensus       210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~  287 (450)
T 2vdu_B          210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPY  287 (450)
T ss_dssp             CEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGG
T ss_pred             CcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhh
Confidence            8899999999999999999887654  44788999999999 999999999999999999998765433 221100    


Q ss_pred             ---------------cCcCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEEC--Ccc---eeeEEeCCCCCCeEEEEEcCC
Q 005956          436 ---------------KKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDG--VDV---IHKFKGLPKSGSQMSASFTTT  494 (667)
Q Consensus       436 ---------------~~~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~--~~~---~~~~~~~~~~~~v~~v~~spd  494 (667)
                                     .......|.+++|+|++ .+|++++ .++.|+|||+  ...   ........+ ..+.+++|+|+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             CCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred             hhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence                           00223579999999986 6777777 8999999998  322   222222224 78999999996


Q ss_pred             CCEEEEEeC------CCcEEEEEcCC
Q 005956          495 GKHIISIGD------DCRVYVWNYDE  514 (667)
Q Consensus       495 g~~l~sgs~------Dg~I~iWd~~~  514 (667)
                      +.++++++.      +..|.||.+..
T Consensus       366 ~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          366 EFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             cEEEEEecccCCCCCCcceEEEEEEc
Confidence            544444333      45688887754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=6.8e-25  Score=234.11  Aligned_cols=247  Identities=13%  Similarity=0.132  Sum_probs=195.9

Q ss_pred             ceeeccccccEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~L-atgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      .+.+..|. .+.+++|+|+|++| ++++.|+.|++||+.++.                                      
T Consensus        25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--------------------------------------   65 (391)
T 1l0q_A           25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--------------------------------------   65 (391)
T ss_dssp             EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------------------------------------
T ss_pred             EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe--------------------------------------
Confidence            44556665 48999999999987 677799999999998632                                      


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEE-EEEec
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSI  370 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l-~sgs~  370 (667)
                             .+..+..|. .+.+++|+|++ +|+ +++.++.|++||+.+++.+..+.+...+.+++|+| +++.+ ++++.
T Consensus        66 -------~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~  136 (391)
T 1l0q_A           66 -------VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNG  136 (391)
T ss_dssp             -------EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETT
T ss_pred             -------EEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCC
Confidence                   234444444 89999999999 564 55577999999999999999998888899999999 88866 68888


Q ss_pred             CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      ++.|++||+.+++..........+.+++|+|+|+.+ ++++.++.|++||+++...... +.       +...+.+++|+
T Consensus       137 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~-------~~~~~~~~~~~  208 (391)
T 1l0q_A          137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT-VK-------VEAAPSGIAVN  208 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EE-------CSSEEEEEEEC
T ss_pred             CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE-Ee-------cCCCccceEEC
Confidence            999999999999988766667778999999999988 5667889999999987754322 11       12578999999


Q ss_pred             cCCCeEEEEEe---CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCccc
Q 005956          450 RDESQRIMITS---EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       450 p~g~~~l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l-~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      |++ .+|++++   .++.|++||+.......... ....+.+++|+|+|++| ++++.|+.|++||+.+++...
T Consensus       209 ~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          209 PEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             TTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCC-CEEEEEecCcCCCcEEEEECCCCeEEEEEe-cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence            997 5666666   78999999987544333332 23457899999999988 566889999999999876543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=5e-26  Score=244.23  Aligned_cols=240  Identities=14%  Similarity=0.107  Sum_probs=164.1

Q ss_pred             eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE--e----eCCCcEEEEEEee-------CCCCEEEEEecC
Q 005956          306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV--F----DHHNYVTCVQFNP-------IDDNYFISGSID  371 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~--~----~h~~~V~~l~f~p-------~d~~~l~sgs~D  371 (667)
                      ..|...+....+.+++ +|++++.|++|+|||+.++.+...  +    +|.+.|++++|+|       .++++|++|+.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            3455555555566666 899999999999999998876543  2    3999999999987       267899999999


Q ss_pred             CeEEEEecCCCe-EEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeec----------------
Q 005956          372 GKVRIWGVCEKR-VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFH----------------  433 (667)
Q Consensus       372 g~v~iwdl~~~~-~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~----------------  433 (667)
                      ++|+|||+.++. +.....+...+.+++|+|++ ++|++|+.||+|++||+++.+.........                
T Consensus       166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            999999998765 45677889999999999987 479999999999999998765433211000                


Q ss_pred             --cccCcCCCCeEEEEEc-cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCC------------------eEEEEEc
Q 005956          434 --DRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS------------------QMSASFT  492 (667)
Q Consensus       434 --~~~~~~~~~I~~l~~s-p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~------------------v~~v~~s  492 (667)
                        .....+...+.++.|+ |+ +..|++++.|+.+++||+...........+...                  ...+.|+
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~d-g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSD-GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             ------CCSSSCSEEEEETTT-TCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eeeecccccccceeeeeecCC-CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence              0112355778899987 56 489999999999999997532211111111111                  2223343


Q ss_pred             C--CCCEEEEEeCCCcEEEEEcCCCCcccc-ccccCccceeEEccCCcEEEEecCCC
Q 005956          493 T--TGKHIISIGDDCRVYVWNYDELCFPSS-KQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       493 p--dg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      |  ++.++++|+.||.|+|||+.++..... ......+..++|+|||++||++..+.
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            3  445778889999999999998866433 33345667789999999999987543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1.4e-24  Score=231.75  Aligned_cols=256  Identities=11%  Similarity=0.072  Sum_probs=203.8

Q ss_pred             CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceEE
Q 005956          235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  314 (667)
Q Consensus       235 ~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~  314 (667)
                      .++++++.|+.|++||+.++                                             +.+..+.+|. .+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~---------------------------------------------~~~~~~~~~~-~~~~   36 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN---------------------------------------------KVTATIPVGS-NPMG   36 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT---------------------------------------------EEEEEEECSS-SEEE
T ss_pred             EEEEEcCCCCEEEEEECCCC---------------------------------------------eEEEEeecCC-Ccce
Confidence            47888999999999999863                                             2344555564 4899


Q ss_pred             EEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCCeEEEEecCCCeEEEecccC
Q 005956          315 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEKRVVDWADVR  391 (667)
Q Consensus       315 l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg~v~iwdl~~~~~~~~~~~~  391 (667)
                      ++|+|++ +| ++++.|++|++||+.+++++..+.+...+.+++|+| ++++|+ +++.++.|++||+.+++.+....+.
T Consensus        37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~  115 (391)
T 1l0q_A           37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (391)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC
Confidence            9999999 55 677799999999999999999998777999999999 888775 4556799999999999988777777


Q ss_pred             CceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956          392 DVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  470 (667)
Q Consensus       392 ~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~  470 (667)
                      ..+.+++|+|+|+.+ ++++.++.|++||+.+++.... +..       ...+..++|+|++..++++++.++.|++||+
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-VSV-------GRSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EEC-------CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-Eec-------CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            889999999999987 6777899999999987765432 211       2567999999997555577888999999998


Q ss_pred             CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956          471 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIG---DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       471 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .......... +...+.+++|+|+|++|++++   .++.|++||+.+++.............+.|+|+|..++++...+
T Consensus       188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d  265 (391)
T 1l0q_A          188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX  265 (391)
T ss_dssp             TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred             CCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC
Confidence            7654333332 456789999999999999988   68999999999886644433334456689999999887665444

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.2e-25  Score=259.45  Aligned_cols=237  Identities=18%  Similarity=0.220  Sum_probs=190.9

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC--CCeEeEEee-CCCcEEEEEEeeCC--CCEEEEEecCCeEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFD-HHNYVTCVQFNPID--DNYFISGSIDGKVR  375 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~--~~~~~~~~~-h~~~V~~l~f~p~d--~~~l~sgs~Dg~v~  375 (667)
                      +..+.+|.+.|++++|+|++ +|++|+.||+|+|||+.  +++.+..+. |...|++++|+| +  +++|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEE
Confidence            34678999999999999999 99999999999999998  445666664 999999999998 6  89999999999999


Q ss_pred             EEecCCCe---EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          376 IWGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       376 iwdl~~~~---~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      +||+.+++   ......|...|++++|+|+  ++.+++|+.||.|++||+++....... ..    ..+...|++++|+|
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~----~~~~~~v~~l~~~p  155 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-II----DAHAIGVNSASWAP  155 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-EE----ECCSSCEEEEEECC
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-Ee----ecCCCceEEEEecC
Confidence            99999985   3456678899999999999  999999999999999999877443221 11    22357899999999


Q ss_pred             C------------CCeEEEEEeCCCcEEEEECCcc----eeeEEeCCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 005956          451 D------------ESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYVWN  511 (667)
Q Consensus       451 ~------------g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~spd---g~~l~sgs~Dg~I~iWd  511 (667)
                      .            ++.++++++.||.|++||+...    ........|...|.+++|+|+   +++|++++.||.|++||
T Consensus       156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence            4            2479999999999999997643    222333458899999999999   99999999999999999


Q ss_pred             cCCCCcc------ccccccCccceeEEccCCcEEEEecC
Q 005956          512 YDELCFP------SSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       512 ~~~~~~~------~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      +.++...      ........+.++.|+|+|.+++++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (753)
T ss_dssp             ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred             CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence            9887421      11224455667899999999998754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=2.2e-25  Score=236.72  Aligned_cols=198  Identities=15%  Similarity=0.157  Sum_probs=161.2

Q ss_pred             ccccccEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs--~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      ..+...+.+++|||||++||+|+  .|++|+|||+.++                                          
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~------------------------------------------  167 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL------------------------------------------  167 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT------------------------------------------
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC------------------------------------------
Confidence            35667799999999999987654  7899999999863                                          


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                         +++..+ .|...|.+++|+|++ +|++++. +.+++|+..+++.+...   .|...|.+++|+| ++.++++++.|+
T Consensus       168 ---~~~~~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~  241 (365)
T 4h5i_A          168 ---TEKFEI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKK  241 (365)
T ss_dssp             ---EEEEEE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESS
T ss_pred             ---cEEEEe-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCC
Confidence               223444 377889999999999 7777764 56777777777665433   3788999999999 999999999887


Q ss_pred             ----eEEEEecCCCeE-----EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956          373 ----KVRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       373 ----~v~iwdl~~~~~-----~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                          .+++|++.....     .....+...|++++|+|||++||+|+.|++|+|||+.+.+.....      ...|...|
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~------~~gH~~~V  315 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF------KQAHSFAI  315 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE------TTSSSSCE
T ss_pred             cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe------cCcccCCE
Confidence                688999877653     235677889999999999999999999999999999887654321      23456899


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~  471 (667)
                      ++++|+||| ++|++++.|++|+|||+.
T Consensus       316 ~~v~fSpdg-~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          316 TEVTISPDS-TYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEEECTTS-CEEEEEETTSEEEEEECC
T ss_pred             EEEEECCCC-CEEEEEeCCCeEEEEEcC
Confidence            999999996 899999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=1.7e-24  Score=234.27  Aligned_cols=242  Identities=10%  Similarity=0.084  Sum_probs=200.5

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .+.+|.+.|++++|+|+++++++++.|+.|++||+.++                                          
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~------------------------------------------  201 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL------------------------------------------  201 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC------------------------------------------
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc------------------------------------------
Confidence            45689999999999999999999999999999999852                                          


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe-----
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-----  369 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs-----  369 (667)
                         +.+..+..|...+.+++|+|++ .+ ++++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++     
T Consensus       202 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~  277 (433)
T 3bws_A          202 ---AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASN  277 (433)
T ss_dssp             ---CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCT
T ss_pred             ---eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCc
Confidence               3456667888999999999998 55 455689999999999999999888878899999999 898998888     


Q ss_pred             ---cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          370 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       370 ---~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                         .|+.|++||+.+++......+...+.+++|+|+++.+ ++++.++.|++||+.+.+.... +.       +...+.+
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~-~~-------~~~~~~~  349 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS-IP-------VFDKPNT  349 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE-EE-------CSSSEEE
T ss_pred             cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE-ec-------CCCCCCe
Confidence               4889999999999988777777789999999999765 5568899999999987654322 21       2367899


Q ss_pred             EEEccCCCeEEEEEeC---------------CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 005956          446 IQFSRDESQRIMITSE---------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYV  509 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~i  509 (667)
                      ++|+|+| .++++++.               ||.|++||..+........ ....+.+++|+|+|++|++++. |+.|++
T Consensus       350 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          350 IALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             EEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred             EEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence            9999997 66666665               5799999987544333322 3567899999999999998875 999999


Q ss_pred             EEcCC
Q 005956          510 WNYDE  514 (667)
Q Consensus       510 Wd~~~  514 (667)
                      |++++
T Consensus       428 ~~~~~  432 (433)
T 3bws_A          428 YRRDG  432 (433)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            99864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=1.2e-24  Score=236.38  Aligned_cols=233  Identities=13%  Similarity=0.157  Sum_probs=183.3

Q ss_pred             eeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCC----------CeEeEEe-eCCCcEEEEEEeeCCCC-EEEEE
Q 005956          303 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC----------NQCLNVF-DHHNYVTCVQFNPIDDN-YFISG  368 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~----------~~~~~~~-~h~~~V~~l~f~p~d~~-~l~sg  368 (667)
                      ....+|.+.|++++|+|+ + +|++++.||.|++||+.+          ...+..+ .|...|++++|+| ++. +|++|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~  200 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA  200 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence            445689999999999997 4 899999999999999976          4555555 4899999999999 666 99999


Q ss_pred             ecCCeEEEEecCCCe--------EEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          369 SIDGKVRIWGVCEKR--------VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~--------~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      +.||.|++||+..+.        ...+..|...|.+++|+| ++..|++++.+|.|++||+++.........+    ..|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~----~~~  276 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV----DAH  276 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE----ECC
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe----ecC
Confidence            999999999998732        123557888999999999 6789999999999999999976421111111    234


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ...|++++|+|++..++++++.||.|++||++.   ....+..  |...|.+++|+|+++ +|++++.|+.|+|||+...
T Consensus       277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            578999999999866899999999999999875   2344444  788999999999995 6999999999999999873


Q ss_pred             Cc--------------ccc-ccccCccceeEEccCCc-EEEEe
Q 005956          516 CF--------------PSS-KQKNSVRSCEHFFSEGV-SVAVQ  542 (667)
Q Consensus       516 ~~--------------~~~-~~~~~~~~~~~fs~dg~-~lav~  542 (667)
                      ..              ... ......+..+.|+|++. +++.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~  397 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV  397 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence            21              111 12234456678888887 55544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.3e-25  Score=231.40  Aligned_cols=243  Identities=11%  Similarity=0.070  Sum_probs=185.3

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      .+.|.++.|+|+   |++|+.|++|++|+....                     +..+...               ....
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~---------------------~~~~~~~---------------~~~~  116 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ---------------------ITILDSK---------------TNKV  116 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTE---------------------EEEEETT---------------TCCE
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCc---------------------eEEeecC---------------Ccce
Confidence            467888889998   999999999999998741                     0011000               0111


Q ss_pred             ceeee-ccccceEEEEecC--CC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956          302 LQELH-GHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (667)
Q Consensus       302 ~~~l~-gh~~~V~~l~~s~--~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~  375 (667)
                      +..+. +|...|.+++|+|  ++ +|++++.|++|++||+.+++++..+.  +...|++++|+| ++.+|++|+.|+.|+
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~  195 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEE
Confidence            33333 6778999999999  88 99999999999999999999877663  556899999999 999999999999999


Q ss_pred             EEecCCCeEE--Eecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe--EEEEEcc
Q 005956          376 IWGVCEKRVV--DWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI--TGIQFSR  450 (667)
Q Consensus       376 iwdl~~~~~~--~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I--~~l~~sp  450 (667)
                      +||+++++..  .+.. |...|++++|+|+|.+|++++ ++.|++||++..........+..    +...+  .+++|+|
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  270 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDIDD  270 (343)
T ss_dssp             EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---------CCEEEEECT
T ss_pred             EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc----ccccccceEEEECC
Confidence            9999998865  4565 889999999999999999999 55999999998765432111111    11222  5799999


Q ss_pred             CCCeEEEEEeC-CCcEEEEECCcceeeEEeCCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCC
Q 005956          451 DESQRIMITSE-DSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       451 ~g~~~l~~~s~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      +| .+|++++. |+.|+||+..+....+..    .++..++|++   +++.|++++.|+.+.++-...
T Consensus       271 ~g-~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          271 SG-KNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             TS-SEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             CC-CEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            96 78888888 999999997654333332    4567788888   889999999999999886544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.2e-24  Score=234.85  Aligned_cols=221  Identities=15%  Similarity=0.184  Sum_probs=175.4

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .|...|++++|||||++||+++.||.|+|||...                                              
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------------------------------------------  116 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------------------------------------------  116 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------------------------------------------
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------------------------------------------
Confidence            5688999999999999999999999999999652                                              


Q ss_pred             Ccceeeecccc-----ceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-------EeEEe-----eCCCcEEEEEEeeCC
Q 005956          300 SPLQELHGHKG-----DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-----DHHNYVTCVQFNPID  361 (667)
Q Consensus       300 ~~~~~l~gh~~-----~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-------~~~~~-----~h~~~V~~l~f~p~d  361 (667)
                       .+..+. |..     .|.+++|||+| +|++|+.||+|+|||+.++.       .+..+     +|...|.+++|+| +
T Consensus       117 -~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-d  193 (588)
T 2j04_A          117 -MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-D  193 (588)
T ss_dssp             -EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-T
T ss_pred             -eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-C
Confidence             233344 444     59999999999 99999999999999999875       24554     2678999999999 7


Q ss_pred             CCEEEEEecCCeEEEEecCCCeEE----Ee-cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc
Q 005956          362 DNYFISGSIDGKVRIWGVCEKRVV----DW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  436 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~~~----~~-~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~  436 (667)
                      +  +++++.|++|++||+.++...    .+ ..|...|.+++|+  |+.+|+++ ++.|++||+.+......       .
T Consensus       194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-------~  261 (588)
T 2j04_A          194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-------K  261 (588)
T ss_dssp             E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-------E
T ss_pred             c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-------E
Confidence            7  888999999999999887742    23 3677899999999  68898887 69999999987765322       1


Q ss_pred             CcCCCCeEEEEE--ccCCCeEEEEEeCCCcEEEEECCcce---------------ee-------EEeCCCCCCeEEEEEc
Q 005956          437 KTSGNKITGIQF--SRDESQRIMITSEDSKLRILDGVDVI---------------HK-------FKGLPKSGSQMSASFT  492 (667)
Q Consensus       437 ~~~~~~I~~l~~--sp~g~~~l~~~s~dg~I~iwd~~~~~---------------~~-------~~~~~~~~~v~~v~~s  492 (667)
                      ..|...|..+.|  +|++ ..+++++.+|+ ++|......               ..       +....+...|.+++||
T Consensus       262 ~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~S  339 (588)
T 2j04_A          262 TGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLS  339 (588)
T ss_dssp             CSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEEC
T ss_pred             cCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEEC
Confidence            135688999999  9996 88999999999 999864211               00       0011122348899999


Q ss_pred             CCCCEEEEEeC
Q 005956          493 TTGKHIISIGD  503 (667)
Q Consensus       493 pdg~~l~sgs~  503 (667)
                      |||+.+|+++.
T Consensus       340 PdG~~lA~~~~  350 (588)
T 2j04_A          340 PDGYSIAIVYD  350 (588)
T ss_dssp             TTSSEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999999873

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=2.5e-23  Score=224.83  Aligned_cols=261  Identities=11%  Similarity=0.101  Sum_probs=197.2

Q ss_pred             eeeccccccEEEEEEcC--------------CCCEEEEEECC------CcEEEEEcCCCceeeeeeCCCCCccccCCCCe
Q 005956          216 QEIQAHKGCIWTLKFSP--------------DGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK  275 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fsp--------------dg~~Latgs~D------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~  275 (667)
                      ..+.+|...+..+++++              .+..|+.++.+      +.|++||+..                      
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----------------------  168 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----------------------  168 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS----------------------
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC----------------------
Confidence            45677888787777764              25666666654      7999999874                      


Q ss_pred             EEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCC---cEEEEecCCCeEeEEeeCCCc
Q 005956          276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNY  351 (667)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg---~I~iWd~~~~~~~~~~~h~~~  351 (667)
                                              .....+.+|...|.+++|+|++ .|++++.++   .|++||+.++++.....|...
T Consensus       169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~  224 (415)
T 2hqs_A          169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH  224 (415)
T ss_dssp             ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred             ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence                                    2356677899999999999999 899998885   999999999998877778889


Q ss_pred             EEEEEEeeCCCCEEE-EEecCCe--EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CC--cEEEEEecCCcc
Q 005956          352 VTCVQFNPIDDNYFI-SGSIDGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL  425 (667)
Q Consensus       352 V~~l~f~p~d~~~l~-sgs~Dg~--v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg--~i~l~d~~~~~~  425 (667)
                      +.+++|+| ++++|+ +++.++.  |++||+.+++...+..+...+.+++|+|||+.|++++. ++  .|.+||+.++..
T Consensus       225 ~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          225 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             ccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            99999999 898777 6666554  99999999998888888889999999999999998886 45  577778876653


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs  502 (667)
                      .  .+..      +...+..++|+|+| ++|++++.+   ..|++||+....... ...+ ..+.+++|+|+|++|++++
T Consensus       304 ~--~l~~------~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~s  372 (415)
T 2hqs_A          304 Q--RITW------EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQV-LSST-FLDETPSLAPNGTMVIYSS  372 (415)
T ss_dssp             E--ECCC------SSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEEE-CCCS-SSCEEEEECTTSSEEEEEE
T ss_pred             E--EEec------CCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEEE-ecCC-CCcCCeEEcCCCCEEEEEE
Confidence            2  1111      23578899999997 566666543   589999987543322 2223 3889999999999999998


Q ss_pred             CCC---cEEEEEcCCCCccccccccCccceeEEcc
Q 005956          503 DDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFS  534 (667)
Q Consensus       503 ~Dg---~I~iWd~~~~~~~~~~~~~~~~~~~~fs~  534 (667)
                      .++   .|++||+.+............+...+|+|
T Consensus       373 ~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~  407 (415)
T 2hqs_A          373 SQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  407 (415)
T ss_dssp             EETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             cCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccc
Confidence            877   79999998665443333333333334444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.8e-23  Score=214.47  Aligned_cols=198  Identities=14%  Similarity=0.083  Sum_probs=141.1

Q ss_pred             eccccceEEEEecCCCeEEEEe---CCCcEEEEec-CCCeEeEEe-eCCCcEEEEEEeeC--CCCEEEEEecCCeEEEEe
Q 005956          306 HGHKGDVLDLAWSNSNYLLSCS---MDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~~l~s~s---~Dg~I~iWd~-~~~~~~~~~-~h~~~V~~l~f~p~--d~~~l~sgs~Dg~v~iwd  378 (667)
                      .+|...|..+   +++.++.++   .|++|++|++ .+++.+..+ .|...++.++|+|.  ++.+|++|+.|++|+|||
T Consensus       133 ~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWD  209 (356)
T 2w18_A          133 SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWN  209 (356)
T ss_dssp             EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEE
Confidence            3455556554   566555554   5999999999 447776655 48888888888874  669999999999999999


Q ss_pred             cCCCeEEEec-ccC---CceEEEEEeeCCCEE------------EEEecCCcEEEEEecCCcceee-eEeeccccCcCCC
Q 005956          379 VCEKRVVDWA-DVR---DVISAICYIPDGKGF------------IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGN  441 (667)
Q Consensus       379 l~~~~~~~~~-~~~---~~v~~v~~spdg~~l------------~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~  441 (667)
                      +.+++.+... .+.   ..+.+++|+|+|+++            ++|+.|++|++||..+++.... .+.+   ...|..
T Consensus       210 l~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~---p~Gh~~  286 (356)
T 2w18_A          210 LKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL---PPGQAG  286 (356)
T ss_dssp             TTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC---CTTCCC
T ss_pred             CCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec---cCCCcc
Confidence            9999877643 332   357788999999887            5577899999999987765432 1111   112223


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~-~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      .+.+..++  + .++++++.|++|+|||+.+........+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus       287 ~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          287 RFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            34444444  2 5899999999999999986544444333655444 6899999999999999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.92  E-value=8.8e-23  Score=215.78  Aligned_cols=227  Identities=11%  Similarity=0.096  Sum_probs=167.5

Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEE-EEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l-~sgs~Dg~v~iw  377 (667)
                      .++..+.+|...|++++|+|++ +|++|+.+ .++||++.+++.+....+. .+..+.+.+ +++.+ ++++.|++|++|
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLH-RTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECT-TSSEEEEECSSTTEEEEE
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcC-CCCEEEEEECCccEEEEE
Confidence            4556678899999999999999 77777666 5889999988776655443 477888888 66666 667888999999


Q ss_pred             ecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC-cceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       378 dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~-~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                      |+.+++.+....+...|.+++++++.  ++++ .++.|++||+.+. +.... +..         +...+++++   .++
T Consensus        87 d~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~-~~~---------~~~~~~~s~---~~l  150 (355)
T 3vu4_A           87 DDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD-DIR---------FGGVCEFSN---GLL  150 (355)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC-CEE---------EEEEEEEET---TEE
T ss_pred             ECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE-ecc---------CCceEEEEc---cEE
Confidence            99999988777788899999998864  4443 4889999999877 33221 111         334556666   245


Q ss_pred             EE--EeCCCcEEEEECCcce----------------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEcCCCCc
Q 005956          457 MI--TSEDSKLRILDGVDVI----------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDELCF  517 (667)
Q Consensus       457 ~~--~s~dg~I~iwd~~~~~----------------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~-I~iWd~~~~~~  517 (667)
                      ++  ++.||.|++||+....                .......|...|.+++|+|+|++|++|+.|++ |+|||+.+++.
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            54  5899999999987532                02233448999999999999999999999998 99999998876


Q ss_pred             ccccc---ccCccceeEEccCCcEEEEecCC
Q 005956          518 PSSKQ---KNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       518 ~~~~~---~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      .....   ....+.+++|+|||.+||++..+
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDK  261 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence            54432   45667788999999999987654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=3.3e-23  Score=223.98  Aligned_cols=271  Identities=11%  Similarity=0.069  Sum_probs=201.6

Q ss_pred             cccEEEEEEcCCCC-EEEEEE----CCC----cEEEEEc--CCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          222 KGCIWTLKFSPDGR-YLASGG----EDG----VVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       222 ~~~I~~v~fspdg~-~Latgs----~Dg----~I~vWdv--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      .+.|....|++.|. ++++|+    .||    .|+|||+  .++...                                 
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~---------------------------------  108 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL---------------------------------  108 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE---------------------------------
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE---------------------------------
Confidence            34567777877775 666876    467    8999999  653211                                 


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecC---------------CCeEEEEeCC------CcEEEEecCCCeEeEEeeCC
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSN---------------SNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH  349 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~---------------~~~l~s~s~D------g~I~iWd~~~~~~~~~~~h~  349 (667)
                                ....+.+|...+..+++++               ...++.++.+      ++|++||+..+.......|.
T Consensus       109 ----------~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~  178 (415)
T 2hqs_A          109 ----------AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP  178 (415)
T ss_dssp             ----------EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES
T ss_pred             ----------eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC
Confidence                      0134667777777776654               3466666554      79999999866655555689


Q ss_pred             CcEEEEEEeeCCCCEEEEEecCC---eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEE-EEecCCc--EEEEEecCC
Q 005956          350 NYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGT--CHFYKASGN  423 (667)
Q Consensus       350 ~~V~~l~f~p~d~~~l~sgs~Dg---~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~-~gs~dg~--i~l~d~~~~  423 (667)
                      ..|.+++|+| ++++|++++.++   .|++||+.+++...+..+...+.+++|+|||+.|+ +++.+|.  |++||+.++
T Consensus       179 ~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          179 QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence            9999999999 999999999885   99999999999888888888999999999999888 5565554  899999876


Q ss_pred             cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC-CC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956          424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS  500 (667)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s  500 (667)
                      +...    +    ..+...+.+++|+|+| ++|++++. ++  .|++||+...... ....+...+.+++|+|+|++|++
T Consensus       258 ~~~~----l----~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~  327 (415)
T 2hqs_A          258 QIRQ----V----TDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVM  327 (415)
T ss_dssp             CEEE----C----CCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEE
T ss_pred             CEEe----C----cCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEE
Confidence            5421    1    1234679999999997 66666665 55  6777887654322 12225667889999999999998


Q ss_pred             EeCC---CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCC
Q 005956          501 IGDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       501 gs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      ++.+   ..|++||+.+++........ ....+.|+|||..|+++....+
T Consensus       328 ~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~  376 (415)
T 2hqs_A          328 VSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGM  376 (415)
T ss_dssp             EEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETT
T ss_pred             EECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCC
Confidence            8864   58999999988764433333 5667899999999988765443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=6.9e-23  Score=210.12  Aligned_cols=215  Identities=10%  Similarity=0.031  Sum_probs=154.0

Q ss_pred             ccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          221 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       221 H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      |.+.|++++|+||    ++++++++.+  ++||++.++.......        ...++.++++....             
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~--------~g~d~~V~~~~~s~-------------  166 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSG--------TLSDQQVEVMTFAE-------------  166 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEES--------SSTTCEEEEEEECT-------------
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecc--------cCCCCcEEEEEECC-------------
Confidence            6678999999999    9999998854  8889886533222111        01233444333211             


Q ss_pred             ccCCcceeeeccccceEEEEecC---CC-eEEEEeCCCcEEEEecCCCeEeEEee-C---CCcEEEEEEeeCCCCEE---
Q 005956          297 IEESPLQELHGHKGDVLDLAWSN---SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-H---HNYVTCVQFNPIDDNYF---  365 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~---~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h---~~~V~~l~f~p~d~~~l---  365 (667)
                       .++.+..+.+|...+..++|++   ++ .|++++.|++|+|||+.++++++++. |   ...+.+++|+| ++.++   
T Consensus       167 -dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~  244 (356)
T 2w18_A          167 -DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVL  244 (356)
T ss_dssp             -TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEE
T ss_pred             -CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEe
Confidence             1344667789999999999998   55 99999999999999999999999985 3   34678889999 88876   


Q ss_pred             ---------EEEecCCeEEEEecCCCeEEEec------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeE
Q 005956          366 ---------ISGSIDGKVRIWGVCEKRVVDWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  430 (667)
Q Consensus       366 ---------~sgs~Dg~v~iwdl~~~~~~~~~------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~  430 (667)
                               ++|+.|++|++||..+++.+...      +|...+.  ..+.++..+++|+.||+|+|||+.+++....  
T Consensus       245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t--  320 (356)
T 2w18_A          245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL--  320 (356)
T ss_dssp             C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE--
T ss_pred             ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE--
Confidence                     56888999999999999876432      3333443  3344488999999999999999998876543  


Q ss_pred             eeccccCcCCCC-eEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956          431 DFHDRKKTSGNK-ITGIQFSRDESQRIMITSEDSKLRILDG  470 (667)
Q Consensus       431 ~~~~~~~~~~~~-I~~l~~sp~g~~~l~~~s~dg~I~iwd~  470 (667)
                       +.+    |... +..++|+|+| ++|++|+.|++|+|||.
T Consensus       321 -L~g----H~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          321 -LPP----VSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -ECC----C--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred             -ecC----CCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence             222    2233 4568999996 89999999999999984

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=4.9e-22  Score=230.65  Aligned_cols=292  Identities=11%  Similarity=0.056  Sum_probs=196.3

Q ss_pred             cccEEEEEEcCCCCEEEEEEC-CC-----cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          222 KGCIWTLKFSPDGRYLASGGE-DG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~-Dg-----~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ...|.+++|||||++|++++. |+     .|++||+.++............     .++..           +.      
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~~~-----------~~------   93 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-----PGTET-----------LS------   93 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-----ccccc-----------cc------
Confidence            457999999999999999998 88     9999999876543322111000     00000           00      


Q ss_pred             cccCCcceeee--ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC---eEeEEeeCCCcEEEEEEeeCCCCEEEEEe
Q 005956          296 QIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       296 ~~~~~~~~~l~--gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~---~~~~~~~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                       ..........  .....|.+++|+||| +|++++. +.|++||+.++   .......+...+.+++|+| |+++|++++
T Consensus        94 -~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~  170 (741)
T 2ecf_A           94 -DEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR  170 (741)
T ss_dssp             --------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred             -chhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe
Confidence             0000000000  012458899999999 7777776 99999999988   6665556888999999999 999999887


Q ss_pred             cCCeEEEEecCCCeEEEecccCCc-----------------eEEEEEeeCCCEEEEEecCC-------------------
Q 005956          370 IDGKVRIWGVCEKRVVDWADVRDV-----------------ISAICYIPDGKGFIVGSITG-------------------  413 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~~~~~~~~-----------------v~~v~~spdg~~l~~gs~dg-------------------  413 (667)
                       ++.|++||+.+++..........                 +..++|+|||++|++++.++                   
T Consensus       171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence             56999999999887765443222                 47899999999999988765                   


Q ss_pred             --------------cEEEEEecC-CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe-----CCCcEEEEECCcc
Q 005956          414 --------------TCHFYKASG-NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS-----EDSKLRILDGVDV  473 (667)
Q Consensus       414 --------------~i~l~d~~~-~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s-----~dg~I~iwd~~~~  473 (667)
                                    .|.+||+.+ ++....  ...   ..+...+..++| ||| ++|++++     .+..|++||+.+.
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~--~~~---~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQTQWI--DLG---KEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCCEEE--CCC---SCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCceEEe--cCC---CCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCC
Confidence                          788888877 654321  111   123467899999 997 5555544     3568999998753


Q ss_pred             e--eeEEeCCCCC---CeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCCccccccccC-ccceeEEccCCcEEEEecCCC
Q 005956          474 I--HKFKGLPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYD-ELCFPSSKQKNS-VRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       474 ~--~~~~~~~~~~---~v~~v~~spdg~~l~sgs~Dg~I~iWd~~-~~~~~~~~~~~~-~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .  ..+... ...   .+..++|+|||+++++++.||.++||.++ ++.......... +.....|+|||..+++....+
T Consensus       323 ~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~  401 (741)
T 2ecf_A          323 QQRVLAHET-SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIE  401 (741)
T ss_dssp             CEEEEEEEE-CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred             ceEEEEEcC-CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence            3  333322 111   34678999999999999999988888765 222222222222 233346999999887766655


Q ss_pred             C
Q 005956          547 G  547 (667)
Q Consensus       547 ~  547 (667)
                      +
T Consensus       402 ~  402 (741)
T 2ecf_A          402 S  402 (741)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=5.7e-21  Score=213.27  Aligned_cols=281  Identities=11%  Similarity=0.126  Sum_probs=205.3

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEc--CCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ..+.+++..+.. +..++|+|||++|++++.|++|++||+  .++                                   
T Consensus       169 ~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-----------------------------------  212 (543)
T 1nir_A          169 KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP-----------------------------------  212 (543)
T ss_dssp             CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-----------------------------------
T ss_pred             ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC-----------------------------------
Confidence            344556663333 899999999999999999999999999  542                                   


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecC----CC-eEEEEe-CCCcEEEEecCCCeEeEEeeC------------CCc
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSN----SN-YLLSCS-MDKTVRMWQVGCNQCLNVFDH------------HNY  351 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~----~~-~l~s~s-~Dg~I~iWd~~~~~~~~~~~h------------~~~  351 (667)
                                +.+.++. +...+..++|+|    ++ +|++++ .+++|.|||..+++++..+..            ...
T Consensus       213 ----------~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          213 ----------TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             ----------EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             ----------cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence                      2234444 345679999999    99 777776 589999999999999888752            237


Q ss_pred             EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceee
Q 005956          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~  428 (667)
                      +..+.++|.+..++++...+++|.+||+.+.+...  ...+...+..+.|+|+|+++++++ .+++|.+||+.++++...
T Consensus       282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~  361 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL  361 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence            89999999445566777788999999998765332  334566788899999999877665 588999999998865432


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCc---------ceeeEEeCCCCCCeEEEEEcCCCCEE
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTTTGKHI  498 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~v~~spdg~~l  498 (667)
                       +..  ....|.+....+ ++|+++..++++. .|++|.+||+..         .++.+..  +...+..++|+|+|++|
T Consensus       362 -i~~--g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g~~~~~v~~~pdg~~l  435 (543)
T 1nir_A          362 -VDV--GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHL  435 (543)
T ss_dssp             -EEC--SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCSCCCCEECCTTCCEE
T ss_pred             -ecc--CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CCCCceEEEcCCCCCcE
Confidence             221  122233333333 5777556666665 689999999754         3444544  56677889999999999


Q ss_pred             EEEe-------CCCcEEEEEcCCCCcc-ccc---------cccCccceeEEccCCcEEEEe-cCC
Q 005956          499 ISIG-------DDCRVYVWNYDELCFP-SSK---------QKNSVRSCEHFFSEGVSVAVQ-WPG  545 (667)
Q Consensus       499 ~sgs-------~Dg~I~iWd~~~~~~~-~~~---------~~~~~~~~~~fs~dg~~lav~-w~~  545 (667)
                      ++++       .+++|.|||+.+++.. ...         ..........|+|||..+.++ |+.
T Consensus       436 ~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~  500 (543)
T 1nir_A          436 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG  500 (543)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred             EEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence            9987       2679999999988764 211         112334457999999998885 654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=7e-21  Score=198.29  Aligned_cols=248  Identities=11%  Similarity=0.126  Sum_probs=176.8

Q ss_pred             cccccEEEEEEcCCCCEEEEEECC-CcEEEEEcC--CCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~D-g~I~vWdv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++..                                        
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------------------------------------   74 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------------------------------------   74 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------------------------------
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------------------------------
Confidence            477789999999999999999887 999999997  2111                                        


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEec---CCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe-c
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-I  370 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~---~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs-~  370 (667)
                         ..+..+..+. .+..++|+|++ +|++++ .++.|.+||+   ...+.+..+.....+.+++|+| +++++++++ .
T Consensus        75 ---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~  149 (343)
T 1ri6_A           75 ---TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALK  149 (343)
T ss_dssp             ---EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGG
T ss_pred             ---eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCC
Confidence               1123333333 78899999999 666555 4889999999   4445556666666799999999 888888777 8


Q ss_pred             CCeEEEEecCC-CeEEE------ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecC--Ccceee-eEeeccccCcC
Q 005956          371 DGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKLE-KVDFHDRKKTS  439 (667)
Q Consensus       371 Dg~v~iwdl~~-~~~~~------~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~--~~~~~~-~~~~~~~~~~~  439 (667)
                      ++.|++||+.+ +++..      .......+..++|+|+|+++++++ .++.+.+|++..  +..... .+.........
T Consensus       150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (343)
T 1ri6_A          150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  229 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence            99999999987 65432      122345788999999999776655 789999999964  332211 11111101111


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC----cceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYD  513 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~----~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~  513 (667)
                      ...+..++|+|+|..++++...++.|.+||+.    ......... ....+..++|+|+|++|++++ .++.|.+|+++
T Consensus       230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            34677899999974444456689999999986    222222222 223488999999999998888 57999999654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=3.2e-21  Score=195.75  Aligned_cols=236  Identities=12%  Similarity=0.038  Sum_probs=170.4

Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-CeEeEEee-C-CCcEEEEEEeeCCCCEEEEEec--C--CeE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-H-HNYVTCVQFNPIDDNYFISGSI--D--GKV  374 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-~~~~~~~~-h-~~~V~~l~f~p~d~~~l~sgs~--D--g~v  374 (667)
                      ..+..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...+.+++|+| ++++|++++.  +  ..|
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceE
Confidence            3455688899999999999 777765 88999999999 87776664 3 36789999999 9999999983  3  445


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEE-EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~-~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      ..|++.+++...+..+ ..+..++|+|+|+.|+ ++..++.+++|++.........+      ..+...+.++.|+|+|.
T Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~  185 (297)
T 2ojh_A          113 YLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL------THGEGRNDGPDYSPDGR  185 (297)
T ss_dssp             EEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC------CCSSSCEEEEEECTTSS
T ss_pred             EEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc------ccCCCccccceECCCCC
Confidence            5556666665544433 3488999999999887 67789999999976432222211      12346799999999974


Q ss_pred             eEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCCccccc
Q 005956          454 QRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-----------CRVYVWNYDELCFPSSK  521 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-----------g~I~iWd~~~~~~~~~~  521 (667)
                      .+++++..++.++||++. ..........+...+..++|+|+|++|++++.+           +.|++||+.+++.....
T Consensus       186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          186 WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            344444468999999864 222222223356678899999999999988876           56999999987653322


Q ss_pred             ---cccCccceeEEccCCcEEEEecCCCC
Q 005956          522 ---QKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       522 ---~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                         ........+.|+|||..|++......
T Consensus       266 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~  294 (297)
T 2ojh_A          266 DLFGGQGTMNSPNWSPDGDEFAYVRYFPV  294 (297)
T ss_dssp             EEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred             ccCCCCcccccceECCCCCEEEEEEeccC
Confidence               22344566799999999998766543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=2.4e-20  Score=195.36  Aligned_cols=271  Identities=9%  Similarity=0.081  Sum_probs=200.7

Q ss_pred             ccccEEEEEEcCCCCEEEEEEC-------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGE-------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~-------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      +...+..++|+|+|++|++++.       ++.|.+||..++..                                     
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-------------------------------------   81 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-------------------------------------   81 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------------------------------------
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------------------------------------
Confidence            4566889999999999988874       56899999886322                                     


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCC----------cEEEEEEeeCC
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN----------YVTCVQFNPID  361 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~----------~V~~l~f~p~d  361 (667)
                              +..+.. ...+..++|+|++ ++ ++...++.|.+||..+++.+..+....          .+.+++|+| +
T Consensus        82 --------~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d  151 (353)
T 3vgz_A           82 --------TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-A  151 (353)
T ss_dssp             --------EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-T
T ss_pred             --------EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-C
Confidence                    222221 2346788999998 44 455668999999999999888876322          278999999 8


Q ss_pred             CCEEEEEe--cCCeEEEEecCCCeEEEecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956          362 DNYFISGS--IDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  438 (667)
Q Consensus       362 ~~~l~sgs--~Dg~v~iwdl~~~~~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~  438 (667)
                      ++++++++  .++.|.+||+.+++...... +...+..++|+|+|+.+++++.++.+.+||+.+.+.... +...  ...
T Consensus       152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~--~~~  228 (353)
T 3vgz_A          152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR-KKLL--DDG  228 (353)
T ss_dssp             TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE-EECC--CSS
T ss_pred             CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE-EEcC--CCC
Confidence            88777766  47889999999998877555 556688999999999999999999999999987765432 2221  112


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  515 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~  515 (667)
                      +...+..++|+|+|..++++...++.|.+||..+..  ..+..  ..  ...++|+|+|+++++++ .++.|.+||..++
T Consensus       229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CC--CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            235688999999975455555556999999987443  33332  22  25689999999776665 6899999999988


Q ss_pred             CccccccccCccceeEEccCCcEEEEecCC
Q 005956          516 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       516 ~~~~~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      +.............+.|+|||+.+.++...
T Consensus       305 ~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          305 KVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             eEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            765444444455678999999988776543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=7e-20  Score=190.44  Aligned_cols=268  Identities=10%  Similarity=0.078  Sum_probs=186.5

Q ss_pred             EEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956          228 LKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  306 (667)
Q Consensus       228 v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (667)
                      ..|.++++ .+++++.++.|.+||+.++.                                             ....+.
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~---------------------------------------------~~~~~~   37 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE---------------------------------------------ILNQIT   37 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCC---------------------------------------------EEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccc---------------------------------------------eeeeEE
Confidence            34566555 47788889999999998632                                             233344


Q ss_pred             ccccceEEEEecCCC-eEEEEeC-CCcEEEEecCCCeE-eEEeeC-CCcEEEEEEeeCCCCEEEEEecCC---eEEEEec
Q 005956          307 GHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQC-LNVFDH-HNYVTCVQFNPIDDNYFISGSIDG---KVRIWGV  379 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~~~~-~~~~~h-~~~V~~l~f~p~d~~~l~sgs~Dg---~v~iwdl  379 (667)
                      .+...+ .++|+|++ ++++++. ++.|.+||+.+++. ...+.+ ..+..+++|+| ++++++++..++   .|.+||+
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEET
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEEC
Confidence            445556 99999999 5665555 89999999999887 666654 44444499999 999888555443   8999999


Q ss_pred             CCCeEEEecccCCceEEEEEeeCCCEEEEE-ecCCc-EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          380 CEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       380 ~~~~~~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~-i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      .+++.+........+..++|+|+|++++++ ..++. +.+|++.......... ..  ..........++|+|+|..+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~--~~~~~~~~~~~~~spdg~~l~v  192 (331)
T 3u4y_A          116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE--FISGGTRPFNITFTPDGNFAFV  192 (331)
T ss_dssp             TTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE--EECSSSSEEEEEECTTSSEEEE
T ss_pred             CCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc--cccCCCCccceEECCCCCEEEE
Confidence            999988766667778999999999866665 45578 9999998544332210 00  1122356899999999744556


Q ss_pred             EEeCCCcEEEEECCccee---eEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCcccc--------cccc-
Q 005956          458 ITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSS--------KQKN-  524 (667)
Q Consensus       458 ~~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~--------~~~~-  524 (667)
                      ++..++.|++||+.....   ..... ....+..++|+|||++|++++ .++.|.+||+.+++....        .... 
T Consensus       193 ~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  271 (331)
T 3u4y_A          193 ANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP  271 (331)
T ss_dssp             EETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG
T ss_pred             EeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC
Confidence            666789999999864322   22221 346678899999999887665 478899999998765111        0011 


Q ss_pred             -CccceeEEccCCcEEEEecCCC
Q 005956          525 -SVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       525 -~~~~~~~fs~dg~~lav~w~~~  546 (667)
                       .....+.|+|||..|+++....
T Consensus       272 ~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          272 LFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             GTTCCCEEECTTSSEEEEEETTT
T ss_pred             cccccceEECCCCCEEEEecCCC
Confidence             1113469999999998876544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=1.2e-20  Score=227.41  Aligned_cols=360  Identities=11%  Similarity=0.061  Sum_probs=238.1

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECC------CcEEEEEcCCCce-----------------eeeeeCCCCCccccC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGED------GVVRIWHVTSVAA-----------------SCKSFTDDGGFGSNA  271 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~D------g~I~vWdv~~~~~-----------------~~~~~~~~~~~~~~~  271 (667)
                      .+.|.+|.+.|.+++|||||++||+++.+      ..|.+|++.++..                 ....|++++.++...
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~  124 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  124 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEE
Confidence            35677899999999999999999988653      3799999876421                 345667777633322


Q ss_pred             CC-------CeEEecccCCCCceeecCC---------------------------------Cccc-ccCCcceeeecccc
Q 005956          272 KE-------GKIKFGKKKSSHVPVVIPD---------------------------------EVFQ-IEESPLQELHGHKG  310 (667)
Q Consensus       272 ~~-------~~~~~~~~~~~~~~~~~~~---------------------------------~~~~-~~~~~~~~l~gh~~  310 (667)
                      ..       ..+..+.............                                 .+|. ........+.+|..
T Consensus       125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~  204 (1045)
T 1k32_A          125 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST  204 (1045)
T ss_dssp             CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred             CCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence            11       1233332211111100000                                 0010 01133455678999


Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc
Q 005956          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  389 (667)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~  389 (667)
                      .+.++.|+++..+++++.|++++||.+.. +.....+.+...+...+|+| +++.|+++ .++.|++||+...++..+..
T Consensus       205 ~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~~l~~l~~  282 (1045)
T 1k32_A          205 HVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNT-DGRRILFS-KGGSIYIFNPDTEKIEKIEI  282 (1045)
T ss_dssp             CCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEE-SSSCEEEE-ETTEEEEECTTTCCEEECCC
T ss_pred             cccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcC-CCCEEEEE-eCCEEEEecCCceEeeeecc
Confidence            99999999886667788899999998753 33444444333566779999 99988887 48999999996665554333


Q ss_pred             -----------cCCceEEEEEe-eCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCC-CeEEEEEccCCCeEE
Q 005956          390 -----------VRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN-KITGIQFSRDESQRI  456 (667)
Q Consensus       390 -----------~~~~v~~v~~s-pdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~-~I~~l~~sp~g~~~l  456 (667)
                                 +...+.+++|+ |||+.|++++ ++.+.+|++.+.....    +    ..+.. .+..++|+ +| ..|
T Consensus       283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~----~~~~~~~~~~~~~s-dg-~~l  351 (1045)
T 1k32_A          283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V----PEPLRIRYVRRGGD-TK-VAF  351 (1045)
T ss_dssp             CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C----SCCSCEEEEEECSS-SE-EEE
T ss_pred             CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----c----cCCCcceEEeeeEc-CC-CeE
Confidence                       23368999999 9999999887 8899999987654321    1    11234 78999999 85 778


Q ss_pred             EEEeCCCcEE-EEECCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEc
Q 005956          457 MITSEDSKLR-ILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFF  533 (667)
Q Consensus       457 ~~~s~dg~I~-iwd~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs  533 (667)
                      +.++.++.+. +||..... ..+.  .+...+..++|+|||++|++++.++.|++||+.+++..... ........+.|+
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S  429 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  429 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             EEEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence            8888888888 99976432 2222  46788999999999999999999999999999988765443 333444667999


Q ss_pred             cCCcEEEEecCCC--------CcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCC
Q 005956          534 SEGVSVAVQWPGI--------GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG  594 (667)
Q Consensus       534 ~dg~~lav~w~~~--------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g  594 (667)
                      |||++||+.....        ...+.++......  .   ..+...........|||++.+++.++.++
T Consensus       430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~---~~l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--I---FAATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--E---EECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             CCCCeEEEEecCccccccCCCCCeEEEEECCCCc--E---EEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence            9999998875432        1223333221110  0   11111112223356899998776655543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=8.6e-20  Score=189.76  Aligned_cols=252  Identities=10%  Similarity=0.088  Sum_probs=176.6

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ..+..+...+ +++|+|||++|++++. ++.|.+||+.++..                                      
T Consensus        34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------------------------------------   74 (331)
T 3u4y_A           34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------------------------------------   74 (331)
T ss_dssp             EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------------------------------
T ss_pred             eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------------------------------
Confidence            3444556667 9999999997777766 89999999986321                                      


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCC---cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEe
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGS  369 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg---~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs  369 (667)
                            ....+..+..+..+++|+|++ +|+++..++   .|.+||+.+++.+..+.....+.+++|+| ++++++ +..
T Consensus        75 ------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~  147 (331)
T 3u4y_A           75 ------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDR  147 (331)
T ss_dssp             ------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEE
T ss_pred             ------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEec
Confidence                  034445555566569999999 677544442   89999999999999888777889999999 887554 445


Q ss_pred             cCCe-EEEEecCCCeE-----EEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          370 IDGK-VRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       370 ~Dg~-v~iwdl~~~~~-----~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      .++. |.+|++.....     .........+..++|+|+|+++++++ .++.|.+||+.+.+.......+..     ...
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~  222 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-----NNL  222 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----SSC
T ss_pred             CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-----CCC
Confidence            5588 99999875332     12234456689999999999776655 688999999987765211111111     256


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCccee----eEEeC--CCC---CCeEEEEEcCCCCEEEEEeC-CCcEEEEEc
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKGL--PKS---GSQMSASFTTTGKHIISIGD-DCRVYVWNY  512 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~--~~~---~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~  512 (667)
                      +..++|+|+|..++++...++.|.+||..+...    .+...  .+.   .....++|+|||++|++++. ++.|.|||+
T Consensus       223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI  302 (331)
T ss_dssp             CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence            788999999743444455678899999875332    11111  011   12245899999999876655 569999999


Q ss_pred             CCCCcc
Q 005956          513 DELCFP  518 (667)
Q Consensus       513 ~~~~~~  518 (667)
                      .+....
T Consensus       303 ~~~~~~  308 (331)
T 3u4y_A          303 SGKVVG  308 (331)
T ss_dssp             TSCEEE
T ss_pred             cCCccc
Confidence            876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=1.3e-19  Score=188.65  Aligned_cols=237  Identities=13%  Similarity=0.135  Sum_probs=166.7

Q ss_pred             ccccceEEEEecCCC-eEEEEeCC-CcEEEEecC--CCe--EeEEeeCCCcEEEEEEeeCCCCEEEEEec-CCeEEEEec
Q 005956          307 GHKGDVLDLAWSNSN-YLLSCSMD-KTVRMWQVG--CNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGV  379 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~s~D-g~I~iWd~~--~~~--~~~~~~h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl  379 (667)
                      .|...+.+++|+|++ +|++++.+ +.|.+|++.  +++  .+..+.....+..++|+| +++++++++. ++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence            466788999999999 78888776 999999997  554  344455445889999999 8887776665 889999999


Q ss_pred             ---CCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecC-Ccceeee-EeeccccCcCCCCeEEEEEccCCC
Q 005956          380 ---CEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEK-VDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       380 ---~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~-~~~~~~~-~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                         ...+..........+.+++|+|+|+++++++ .++.|.+||+.+ +...... ....   ......+..++|+|++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEEEEEECTTSS
T ss_pred             CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc---cCCCCCcceEEECCCCC
Confidence               4444555555556789999999999888887 899999999986 4332111 0111   11235788999999974


Q ss_pred             eEEEEEeCCCcEEEEECCc--c----eeeEEeC----CCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcC--CCCccc-
Q 005956          454 QRIMITSEDSKLRILDGVD--V----IHKFKGL----PKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYD--ELCFPS-  519 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~--~----~~~~~~~----~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~--~~~~~~-  519 (667)
                      .+++++..++.|.+||+..  .    .......    .....+..++|+|+|++|+++ ..++.|++|++.  ++.... 
T Consensus       191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence            4445555889999999842  1    1222211    113456789999999988754 478999999998  332211 


Q ss_pred             -cccccCccceeEEccCCcEEEEecCCCC
Q 005956          520 -SKQKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       520 -~~~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                       ..........+.|+|+|..|+++...++
T Consensus       271 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  299 (343)
T 1ri6_A          271 GFQPTETQPRGFNVDHSGKYLIAAGQKSH  299 (343)
T ss_dssp             EEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred             eeecCCCccceEEECCCCCEEEEecCCCC
Confidence             1122222556799999998888765443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.86  E-value=1.4e-19  Score=201.91  Aligned_cols=305  Identities=12%  Similarity=0.039  Sum_probs=211.8

Q ss_pred             EcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee-cc
Q 005956          230 FSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GH  308 (667)
Q Consensus       230 fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gh  308 (667)
                      |+|++.++++++.|++|.+||..++                                             +.+.++. +|
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~---------------------------------------------~~~~~i~~g~  179 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSK---------------------------------------------KIVKVIDTGY  179 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTC---------------------------------------------CEEEEEECST
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCc---------------------------------------------eEEEEEecCc
Confidence            7899999999999999999999863                                             3345555 44


Q ss_pred             ccceEEEEecCCC-eEEEEeCCCcEEEEec--CCCeEeEEeeCCCcEEEEEEeeC---CCCEEEEEe-cCCeEEEEecCC
Q 005956          309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGS-IDGKVRIWGVCE  381 (667)
Q Consensus       309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~--~~~~~~~~~~h~~~V~~l~f~p~---d~~~l~sgs-~Dg~v~iwdl~~  381 (667)
                      .  +..++|+|++ +|++++.|++|++||+  .+++++..+.+...+..++|+|.   +++++++++ .+++|.+||..+
T Consensus       180 ~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          180 A--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             T--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             c--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence            3  8899999999 9999999999999999  88999999888888999999982   577777777 589999999999


Q ss_pred             CeEEEeccc------------CCceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEE
Q 005956          382 KRVVDWADV------------RDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       382 ~~~~~~~~~------------~~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~  447 (667)
                      ++++.....            ...+.++.++|++..+ ++...+|.|.+||+.+.+.... .+.       +...+..+.
T Consensus       258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-------~~~~~~~~~  330 (543)
T 1nir_A          258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-------AAPFLHDGG  330 (543)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-------CCSSCCCEE
T ss_pred             cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-------cCcCccCce
Confidence            887654322            2268899999987655 4566789999999987654321 221       135677899


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCccee--eEEeC--CCCCCeEEEEEcCC-CCEEEEEe-CCCcEEEEEcCC-------
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDVIH--KFKGL--PKSGSQMSASFTTT-GKHIISIG-DDCRVYVWNYDE-------  514 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~~--~~~~~v~~v~~spd-g~~l~sgs-~Dg~I~iWd~~~-------  514 (667)
                      |+|+|..+++++..+++|.+||..+...  .+...  .|.+....+ ++|+ |.+++++. .|++|.|||+++       
T Consensus       331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~  409 (543)
T 1nir_A          331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  409 (543)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence            9999744455556789999999875433  33321  244334443 4777 66666665 589999999988       


Q ss_pred             CCccccccc-cCccceeEEccCCcEEEEecC--CC---CcccccccCCCCCCcCc-----cCcCCCCCCcccCCCcccCC
Q 005956          515 LCFPSSKQK-NSVRSCEHFFSEGVSVAVQWP--GI---GTEQKSLCSSSLRDCSQ-----KWDNLETAPWIRDSERFSLG  583 (667)
Q Consensus       515 ~~~~~~~~~-~~~~~~~~fs~dg~~lav~w~--~~---~~~~~~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~fS~~  583 (667)
                      .+....... ......+.|+|||+.|.+...  ++   ...+.++.......-+.     .|..++......-...|+++
T Consensus       410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  489 (543)
T 1nir_A          410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  489 (543)
T ss_dssp             TSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS
T ss_pred             CeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC
Confidence            333222222 223345799999999999763  22   12333333333222111     22223333334445678888


Q ss_pred             CCCCCC
Q 005956          584 SWFSND  589 (667)
Q Consensus       584 ~~~~~~  589 (667)
                      +.++..
T Consensus       490 g~~~~~  495 (543)
T 1nir_A          490 GDEVWF  495 (543)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            887664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=4.3e-20  Score=187.37  Aligned_cols=234  Identities=14%  Similarity=0.123  Sum_probs=172.5

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .+..|.+.|.+++|+|||++|++++ ++.|.+||+.+ +..                                       
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------------------------   75 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------------------------   75 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------------------
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------------------
Confidence            4556899999999999999999987 78999999975 322                                       


Q ss_pred             cccCCcceeeecc-ccceEEEEecCCC-eEEEEe--CCCcEEEEe--cCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EE
Q 005956          296 QIEESPLQELHGH-KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQ--VGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SG  368 (667)
Q Consensus       296 ~~~~~~~~~l~gh-~~~V~~l~~s~~~-~l~s~s--~Dg~I~iWd--~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sg  368 (667)
                            ...+.+| ...|.+++|+|++ +|++++  .++.++||.  +.++. ...+.+...+.+++|+| ++++|+ ++
T Consensus        76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~  147 (297)
T 2ojh_A           76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCG  147 (297)
T ss_dssp             ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEE
T ss_pred             ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEE
Confidence                  2222334 4678899999999 888888  334555555  45554 44455555699999999 888776 78


Q ss_pred             ecCCeEEEEec--CCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          369 SIDGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       369 s~Dg~v~iwdl--~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      +.++.++||++  .+++......+...+.+++|+|+|+.|++++ .++.+++|++.........+      ..+...+..
T Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~  221 (297)
T 2ojh_A          148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI------TDSAYGDWF  221 (297)
T ss_dssp             EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC------CCCSEEEEE
T ss_pred             CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE------ecCCcccCC
Confidence            88999999985  5567777777888899999999999888776 58999999987332222221      112357889


Q ss_pred             EEEccCCCeEEEEEeCC-----------CcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          446 IQFSRDESQRIMITSED-----------SKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~d-----------g~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      +.|+|+| .+|++++.+           +.|++||+...  ........+...+..++|+|+|++|++++.+.
T Consensus       222 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          222 PHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             eEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            9999997 666666554           56999998643  22333223677888999999999999887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=1.3e-20  Score=217.86  Aligned_cols=272  Identities=14%  Similarity=0.124  Sum_probs=187.3

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      .+.+++|+|||+++++ +.||+|++||+.++.                                             ...
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~---------------------------------------------~~~   51 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT---------------------------------------------STV   51 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC---------------------------------------------CEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCc---------------------------------------------EEE
Confidence            4678999999998877 789999999998632                                             233


Q ss_pred             eeecccc---ceEEEEecCCC-eEEEEeCC---------CcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEE
Q 005956          304 ELHGHKG---DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       304 ~l~gh~~---~V~~l~~s~~~-~l~s~s~D---------g~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~s  367 (667)
                      .+.+|..   .|.+++|+||| +|++++.+         +.|.+||+.+++......   |...+..++|+| |++.|++
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~  130 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIF  130 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEE
Confidence            4444543   48999999999 88888764         788899999987633222   344588999999 9999999


Q ss_pred             EecCCeEEEEecCCCeEEEeccc-CC------------------ceEEEEEeeCCCEEEEEecCC---------------
Q 005956          368 GSIDGKVRIWGVCEKRVVDWADV-RD------------------VISAICYIPDGKGFIVGSITG---------------  413 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~~-~~------------------~v~~v~~spdg~~l~~gs~dg---------------  413 (667)
                      ++. +.|++||+.+++....... ..                  .+.+++|+|||+.|++++.++               
T Consensus       131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~  209 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI  209 (723)
T ss_dssp             EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred             EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence            886 7999999999876654332 22                  237899999999999987653               


Q ss_pred             -------------------cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC----CCcEEEEEC
Q 005956          414 -------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE----DSKLRILDG  470 (667)
Q Consensus       414 -------------------~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~----dg~I~iwd~  470 (667)
                                         .|++||+.+...... +........+...+..++|+||| ++|++...    +..|++||+
T Consensus       210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~-l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE-MMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE-CCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEET
T ss_pred             CCcceeccCCCCCCCCCeeEEEEEECCCCceeEE-eeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeC
Confidence                               788899887653221 11111111124578999999997 66655542    357999997


Q ss_pred             Ccce--eeEEeCCCCCCe----EEEEEcCCCCEEEE--EeCCC------cEEEEE-cCCCC---cccccc-ccCccceeE
Q 005956          471 VDVI--HKFKGLPKSGSQ----MSASFTTTGKHIIS--IGDDC------RVYVWN-YDELC---FPSSKQ-KNSVRSCEH  531 (667)
Q Consensus       471 ~~~~--~~~~~~~~~~~v----~~v~~spdg~~l~s--gs~Dg------~I~iWd-~~~~~---~~~~~~-~~~~~~~~~  531 (667)
                      ....  ..+... +...+    ..++|+|||++|+.  +..++      .|++|| ..++.   ...... .........
T Consensus       288 ~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~  366 (723)
T 1xfd_A          288 TTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA  366 (723)
T ss_dssp             TTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred             CCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence            6432  222221 22333    37899999997775  44566      577777 44444   222222 222333468


Q ss_pred             EccCCcEEEEecCCC
Q 005956          532 FFSEGVSVAVQWPGI  546 (667)
Q Consensus       532 fs~dg~~lav~w~~~  546 (667)
                      |+|||+.|++.....
T Consensus       367 ~spdg~~l~~~~~~~  381 (723)
T 1xfd_A          367 YDEKGNKIYFLSTED  381 (723)
T ss_dssp             EETTTTEEEEEESSS
T ss_pred             EcCCCCEEEEEEcCC
Confidence            999999998766553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=9.8e-20  Score=211.28  Aligned_cols=271  Identities=11%  Similarity=0.049  Sum_probs=194.0

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ..|.+++|||||++|++++. +.|.+||+.++..                                           ...
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~-------------------------------------------~~~  144 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK-------------------------------------------AAV  144 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCST-------------------------------------------TSC
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCc-------------------------------------------ceE
Confidence            34889999999999999987 9999999986200                                           023


Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCc----------------EEEEEEeeCCCCE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY----------------VTCVQFNPIDDNY  364 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~----------------V~~l~f~p~d~~~  364 (667)
                      ..+..|...+..++|+||| +|+.++ ++.|++||+.+++...... +...                +..++|+| |+++
T Consensus       145 ~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~  222 (741)
T 2ecf_A          145 RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSA  222 (741)
T ss_dssp             CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSC
T ss_pred             EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCE
Confidence            3455677889999999999 777776 5699999999988776554 2222                47899999 9999


Q ss_pred             EEEEecCC---------------------------------eEEEEecCC-CeEEEec---ccCCceEEEEEeeCCCEEE
Q 005956          365 FISGSIDG---------------------------------KVRIWGVCE-KRVVDWA---DVRDVISAICYIPDGKGFI  407 (667)
Q Consensus       365 l~sgs~Dg---------------------------------~v~iwdl~~-~~~~~~~---~~~~~v~~v~~spdg~~l~  407 (667)
                      |++++.|+                                 .|++||+.+ ++.....   .+...+..++| |||+.|+
T Consensus       223 l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~  301 (741)
T 2ecf_A          223 IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLS  301 (741)
T ss_dssp             EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred             EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence            99988776                                 899999998 8765543   46677999999 9999999


Q ss_pred             EEec-----CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCC
Q 005956          408 VGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLP  481 (667)
Q Consensus       408 ~gs~-----dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~  481 (667)
                      +++.     +..|.+||+.++..... ...+.  ......+..++|+||| +++++++.++.++||... +.. ......
T Consensus       302 ~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~--~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~-~~~l~~  376 (741)
T 2ecf_A          302 FQRQSRDQKKLDLVEVTLASNQQRVL-AHETS--PTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK-AAALTH  376 (741)
T ss_dssp             EEEEETTSSEEEEEEEETTTCCEEEE-EEEEC--SSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC-EEESCC
T ss_pred             EEEecccCCeEEEEEEECCCCceEEE-EEcCC--CCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC-eeeeee
Confidence            8764     56799999988765432 11111  0001145688999997 588888999977777643 111 222333


Q ss_pred             CCCCeEEE-EEcCCCCEEEEE-eCCC--cEEEEEcCC-CCccccccccCccceeEEccCCcEEEEecCC
Q 005956          482 KSGSQMSA-SFTTTGKHIISI-GDDC--RVYVWNYDE-LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       482 ~~~~v~~v-~~spdg~~l~sg-s~Dg--~I~iWd~~~-~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      +...+..+ .|+|+|++|+.. +.++  .++||++.. +..............+.|+|||..+++....
T Consensus       377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEE
T ss_pred             cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecC
Confidence            56677777 599999987654 4455  899999864 3322222223334467999999999987554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=1.3e-19  Score=209.52  Aligned_cols=280  Identities=11%  Similarity=0.097  Sum_probs=192.8

Q ss_pred             ceeeccccc---cEEEEEEcCCCCEEEEEECC---------CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccC
Q 005956          215 SQEIQAHKG---CIWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK  282 (667)
Q Consensus       215 ~~~l~~H~~---~I~~v~fspdg~~Latgs~D---------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (667)
                      .+.+.+|..   .|.+++|||||++||+++.+         +.|.+||+.++...                         
T Consensus        50 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------------------  104 (723)
T 1xfd_A           50 TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-------------------------  104 (723)
T ss_dssp             EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------
T ss_pred             EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-------------------------
Confidence            345556655   49999999999999999875         77889999863221                         


Q ss_pred             CCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCc---------
Q 005956          283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY---------  351 (667)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~---------  351 (667)
                                        .+....+|...+..++|+||| .|++++. +.|++||+.+++...... +...         
T Consensus       105 ------------------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  165 (723)
T 1xfd_A          105 ------------------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW  165 (723)
T ss_dssp             ------------------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred             ------------------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence                              111223455668899999999 7887776 799999999988776654 2332         


Q ss_pred             ---------EEEEEEeeCCCCEEEEEecCC----------------------------------eEEEEecCCCeE-EEe
Q 005956          352 ---------VTCVQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRV-VDW  387 (667)
Q Consensus       352 ---------V~~l~f~p~d~~~l~sgs~Dg----------------------------------~v~iwdl~~~~~-~~~  387 (667)
                               +.+++|+| |+++|++++.|+                                  .|++||+.+++. ..+
T Consensus       166 v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             HHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             eEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence                     27899999 999999987653                                  799999998874 344


Q ss_pred             ccc------CCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceeeeEeeccccCcCCCCe----EEEEEccCCC
Q 005956          388 ADV------RDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKI----TGIQFSRDES  453 (667)
Q Consensus       388 ~~~------~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I----~~l~~sp~g~  453 (667)
                      ..+      ...+..++|+|||+++++....    ..|.+||+.+++..... ....     ...+    ..++|+|||.
T Consensus       245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~~~-----~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH-EDES-----EAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE-EEEC-----SSCCCCCCCCCEECTTSC
T ss_pred             eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE-Eecc-----CCEEeccCCCceEcCCCC
Confidence            332      5678999999999988776543    57999999877653321 1111     1222    3789999985


Q ss_pred             eEEEE-EeCCC------cEEEEE-CCcc----eeeEEeCCCCCCeEE-EEEcCCCCEEEEEeCC---CcEEEEEcCCCC-
Q 005956          454 QRIMI-TSEDS------KLRILD-GVDV----IHKFKGLPKSGSQMS-ASFTTTGKHIISIGDD---CRVYVWNYDELC-  516 (667)
Q Consensus       454 ~~l~~-~s~dg------~I~iwd-~~~~----~~~~~~~~~~~~v~~-v~~spdg~~l~sgs~D---g~I~iWd~~~~~-  516 (667)
                      .++++ +..++      .|++|| ....    ...+..  +...+.. ++|+|||++|+..+.+   +.++||+++... 
T Consensus       319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             eEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence            55554 56677      577787 3322    222221  2334444 6999999999876655   789999986432 


Q ss_pred             -ccc-ccc---ccCccceeEEccCCcEEEEecCCCC
Q 005956          517 -FPS-SKQ---KNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       517 -~~~-~~~---~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                       ... ...   .......+.|+|||+.+++......
T Consensus       397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  432 (723)
T 1xfd_A          397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG  432 (723)
T ss_dssp             CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred             CCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence             111 111   1233456799999999999766544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=1.4e-19  Score=208.72  Aligned_cols=269  Identities=10%  Similarity=0.034  Sum_probs=191.3

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      ...|.+++|||| ++|+.+. |+.|++||+.++.                                              
T Consensus        81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~----------------------------------------------  112 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK----------------------------------------------  112 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE----------------------------------------------
T ss_pred             ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCc----------------------------------------------
Confidence            356999999999 6666554 5999999998632                                              


Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-----CeEeEEee-CCCc--------------EEEEEEeeC
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQCLNVFD-HHNY--------------VTCVQFNPI  360 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-----~~~~~~~~-h~~~--------------V~~l~f~p~  360 (667)
                      ...+..+...+.+++|+|+| .|++ +.|+.|++||+.+     ++...... +...              +.++.|+| 
T Consensus       113 ~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-  190 (706)
T 2z3z_A          113 VTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-  190 (706)
T ss_dssp             EEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred             eEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence            23344556678889999999 7776 4789999999998     77665543 2222              48999999 


Q ss_pred             CCCEEEEEe---------------------------------cCCeEEEEecCCCeEEEec---ccCCceEEEEEeeCCC
Q 005956          361 DDNYFISGS---------------------------------IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDGK  404 (667)
Q Consensus       361 d~~~l~sgs---------------------------------~Dg~v~iwdl~~~~~~~~~---~~~~~v~~v~~spdg~  404 (667)
                      |+++|++++                                 .+..|++||+.+++.....   .+...+.+++|+|||+
T Consensus       191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~  270 (706)
T 2z3z_A          191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN  270 (706)
T ss_dssp             TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence            999999987                                 3467999999998876544   3556799999999999


Q ss_pred             EEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc--CCCeEEEEEeCCCcEEEEECC-cceee
Q 005956          405 GFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITSEDSKLRILDGV-DVIHK  476 (667)
Q Consensus       405 ~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp--~g~~~l~~~s~dg~I~iwd~~-~~~~~  476 (667)
                      .|++++.++     .|.+||+.++...........  ......+..+.|+|  +| +++++++.++.++||+.. +....
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~  347 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD--KHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLI  347 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC--SSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEE
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC--CCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCEE
Confidence            999988775     899999988732222111111  11112346789999  86 788889899988888754 22222


Q ss_pred             EEeCCCCCCeEE-EEEcCCCCEEEEEeCC-C----cEEEEEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956          477 FKGLPKSGSQMS-ASFTTTGKHIISIGDD-C----RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       477 ~~~~~~~~~v~~-v~~spdg~~l~sgs~D-g----~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      .....+...+.. ++|+|+|+.|+.++.+ +    .|+.||+.++......+. .....+.|+|||..+++...
T Consensus       348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPE-SGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCS-SSEEEEEECTTSSEEEEEEE
T ss_pred             EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCC-CceEEEEECCCCCEEEEEec
Confidence            222235556766 7999999988766544 3    677788877654333332 33456799999999888644

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=4.5e-19  Score=185.98  Aligned_cols=249  Identities=13%  Similarity=0.141  Sum_probs=172.2

Q ss_pred             cccccEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      .+...+..++|+|||+ |++++.   ++.|.+|++.++..                                        
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~----------------------------------------   75 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA----------------------------------------   75 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE----------------------------------------
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE----------------------------------------
Confidence            4556778899999999 555544   68999999965321                                        


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEecC-CC--eEeEEeeCC----------CcEEEEEEeeCC
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG-CN--QCLNVFDHH----------NYVTCVQFNPID  361 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~-~~--~~~~~~~h~----------~~V~~l~f~p~d  361 (667)
                         +.+..+..|...+..++|+|++ +|++++ .+++|.+|++. ++  ..+..+.+.          ..+.+++|+| +
T Consensus        76 ---~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d  151 (347)
T 3hfq_A           76 ---HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D  151 (347)
T ss_dssp             ---EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred             ---EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-C
Confidence               1233444567788999999999 777777 78999999996 33  333333322          2488999999 8


Q ss_pred             CCEEEEEecCCeEEEEecC-CCeEEEe----cccCCceEEEEEeeCCCEEEE-EecCCcEEEEEecC--Ccceee-eEee
Q 005956          362 DNYFISGSIDGKVRIWGVC-EKRVVDW----ADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASG--NDLKLE-KVDF  432 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~-~~~~~~~----~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~~--~~~~~~-~~~~  432 (667)
                      ++++++...++.|++|++. ++++...    ......+..++|+|||+++++ +..++.+.+|++..  +..... .+..
T Consensus       152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  231 (347)
T 3hfq_A          152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT  231 (347)
T ss_dssp             SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence            8877666678899999998 5554321    222346788999999997666 45678999999985  332211 1111


Q ss_pred             ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC---cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-CcEE
Q 005956          433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-CRVY  508 (667)
Q Consensus       433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~---~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-g~I~  508 (667)
                      ..........+..++|+|+|..++++...++.|.+||+.   ..........+...+..++|+|||++|++++.+ +.|.
T Consensus       232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence            110011124588999999974444666778999999976   222222222245567899999999999888765 8999


Q ss_pred             EEEcC
Q 005956          509 VWNYD  513 (667)
Q Consensus       509 iWd~~  513 (667)
                      +|+++
T Consensus       312 v~~~d  316 (347)
T 3hfq_A          312 LYARD  316 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=6.9e-20  Score=206.64  Aligned_cols=261  Identities=11%  Similarity=0.044  Sum_probs=185.8

Q ss_pred             ccccEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +..+|++++|+|||++||+++. ||+++||++.++                                             
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---------------------------------------------   54 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---------------------------------------------   54 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------------------------------------------
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------------------------------------------
Confidence            3557999999999999999887 999999998542                                             


Q ss_pred             Ccceeeeccc-cceEEEEecCCCeEEEEeC---CCcEEEEecCC---CeEeEEeeCCCcEEEEEEeeCCCC-EEEEEecC
Q 005956          300 SPLQELHGHK-GDVLDLAWSNSNYLLSCSM---DKTVRMWQVGC---NQCLNVFDHHNYVTCVQFNPIDDN-YFISGSID  371 (667)
Q Consensus       300 ~~~~~l~gh~-~~V~~l~~s~~~~l~s~s~---Dg~I~iWd~~~---~~~~~~~~h~~~V~~l~f~p~d~~-~l~sgs~D  371 (667)
                       ....+..|. ..+..++|+|+..+++++.   +...+||.+..   +... .+.....+...+|+| +++ .+++.+.+
T Consensus        55 -~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~-dg~~~~~~s~~~  131 (582)
T 3o4h_A           55 -ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVD-TGEAVVFTGATE  131 (582)
T ss_dssp             -EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEE-CSSCEEEEEECS
T ss_pred             -CcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCC-CCCeEEEEecCC
Confidence             123344444 6899999999855555554   45566665533   2222 333333455678888 664 34444445


Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      +.+.+||+.+++...+..+..  .+++|+|||++|++++.+    +.|++||+.+++...  +  .    .+...+..++
T Consensus       132 ~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~--l--~----~~~~~~~~~~  201 (582)
T 3o4h_A          132 DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV--F--D----SGEGSFSSAS  201 (582)
T ss_dssp             SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE--E--C----CSSCEEEEEE
T ss_pred             CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE--e--e----cCCCccccce
Confidence            556699999998777665544  889999999999988877    789999998776532  1  1    2236789999


Q ss_pred             EccCCCeEEEEEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEE--------EcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          448 FSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSAS--------FTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~--------~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      |+||| +.|+++..++  .|++||+...... ....+...+..++        |+|||.++++++.|+.++||++  ++.
T Consensus       202 ~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~  277 (582)
T 3o4h_A          202 ISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER  277 (582)
T ss_dssp             ECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE
T ss_pred             ECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe
Confidence            99997 6777888888  8999998754444 3333555566666        9999999999999999999999  443


Q ss_pred             cccccccCccceeEEccCCcEEEEecCCC
Q 005956          518 PSSKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       518 ~~~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      ..  ........+.|+ ||.+++......
T Consensus       278 ~~--~~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          278 VE--APQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             EC--CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             ec--cCCCceEEEEec-CCEEEEEEcCCC
Confidence            32  122344567899 898887755443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=1.8e-19  Score=217.32  Aligned_cols=270  Identities=10%  Similarity=0.038  Sum_probs=207.9

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      +.+.+|.+.+.++.|+++ .++++++.|+.++||.+...                                         
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~-----------------------------------------  234 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD-----------------------------------------  234 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT-----------------------------------------
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC-----------------------------------------
Confidence            445789999999999998 77788888999999987631                                         


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee------------CCCcEEEEEEe-eCC
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD------------HHNYVTCVQFN-PID  361 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~------------h~~~V~~l~f~-p~d  361 (667)
                         ......+..|. .+..++|+|+| .|+.+ .++.|.+||+...... .+.            |...+.+++|+ | +
T Consensus       235 ---g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-d  307 (1045)
T 1k32_A          235 ---GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-D  307 (1045)
T ss_dssp             ---SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-G
T ss_pred             ---CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCC-C
Confidence               12233444454 35677999999 67766 5899999999554443 332            23468999999 9 9


Q ss_pred             CCEEEEEecCCeEEEEecCCCeEEEecccCC-ceEEEEEeeCCCEEEEEecCCcEE-EEEecCCcceeeeEeeccccCcC
Q 005956          362 DNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGSITGTCH-FYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~-~v~~v~~spdg~~l~~gs~dg~i~-l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      +++|++++ ++.|++|++.++.......+.. .+..++|+ ||+.|++++.++.+. +||+.+.....  +.      .+
T Consensus       308 G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~--l~------~~  377 (1045)
T 1k32_A          308 GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK--FE------EN  377 (1045)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE--CC------CC
T ss_pred             CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE--ec------CC
Confidence            99888887 8899999999988877777777 89999999 999999998888888 88987654321  11      23


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC----------cEEE
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC----------RVYV  509 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg----------~I~i  509 (667)
                      ...+..++|+|+| ++|++++.++.|++||+...........|...+.+++|+|||++|++++.++          .|++
T Consensus       378 ~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          378 LGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             ccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            4679999999996 8899999999999999875443333324777889999999999999887654          8999


Q ss_pred             EEcCCCCccccccccCccceeEEccCCcEEEEecCC
Q 005956          510 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       510 Wd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ||+.+++.............+.|+|||+.|++....
T Consensus       457 ~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          457 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             EETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             EECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence            999987643333333444557899999999886653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=8.1e-19  Score=182.09  Aligned_cols=251  Identities=8%  Similarity=-0.011  Sum_probs=181.8

Q ss_pred             CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee-cccc-ce
Q 005956          235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKG-DV  312 (667)
Q Consensus       235 ~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gh~~-~V  312 (667)
                      ++|++++.++.|.+||+.++..                                             +..+. ++.. .+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------------------------~~~~~~~~~~~~~   36 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV---------------------------------------------DKVITIADAGPTP   36 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE---------------------------------------------EEEEECTTCTTCC
T ss_pred             cEEEEcCCCCeEEEEECCCCcE---------------------------------------------EEEEEcCCCCCCc
Confidence            4899999999999999986322                                             22232 2221 47


Q ss_pred             EEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCC------cEEEEEEeeCCCCEEEEEe------------cCC
Q 005956          313 LDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS------------IDG  372 (667)
Q Consensus       313 ~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~------~V~~l~f~p~d~~~l~sgs------------~Dg  372 (667)
                      ..++|+|++ .+ +++..++.|.+||+.+++.+..+....      .+.+++|+| ++++++++.            .++
T Consensus        37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T 1pby_B           37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred             cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCc
Confidence            789999998 54 566678899999999999888776433      677899999 898888886            579


Q ss_pred             eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      .|.+||+.+++..........+..++|+|+|++++++  ++.|.+||+.+.+.... +.....    ..   .+.|+|++
T Consensus       116 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~-~~~~~~----~~---~~~~s~dg  185 (337)
T 1pby_B          116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED-KPIQSW----EA---ETYAQPDV  185 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE-ECSTTT----TT---TTBCCCBC
T ss_pred             eEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee-eecccc----CC---CceeCCCc
Confidence            9999999998887655556678899999999988888  68999999987765322 211110    11   22678886


Q ss_pred             CeEEEEEeCCC-----------------------cEEEEECCccee-eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956          453 SQRIMITSEDS-----------------------KLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  508 (667)
Q Consensus       453 ~~~l~~~s~dg-----------------------~I~iwd~~~~~~-~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~  508 (667)
                      ..+++++..++                       .|.+||+..... ......+...+..++|+|+|++|+++  ++.|+
T Consensus       186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~  263 (337)
T 1pby_B          186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE  263 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred             cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence            43333332333                       468999875332 22222355678899999999999988  79999


Q ss_pred             EEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956          509 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       509 iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      +||+.+++.............+.|+|||..++++.
T Consensus       264 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          264 SFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             EEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES
T ss_pred             EEECCCCcCcceecCCCceeeEEECCCCCEEEEEc
Confidence            99999886544433334455679999999888873

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=7.6e-19  Score=182.30  Aligned_cols=237  Identities=9%  Similarity=0.011  Sum_probs=174.8

Q ss_pred             cEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          224 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       224 ~I~~v~fspdg~~La-tgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      .+..++|+|+|++|+ ++..++.|.+||+.++...                                             
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------------------------   69 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---------------------------------------------   69 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---------------------------------------------
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---------------------------------------------
Confidence            478899999998665 5556789999999864321                                             


Q ss_pred             eeee-c----cccceEEEEecCCC-eEEEEe------------CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCE
Q 005956          303 QELH-G----HKGDVLDLAWSNSN-YLLSCS------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       303 ~~l~-g----h~~~V~~l~~s~~~-~l~s~s------------~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~  364 (667)
                      ..+. +    |...+.+++|+|++ +|+++.            .++.|.+||+.+++.+..+.....+.+++|+| ++++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~  148 (337)
T 1pby_B           70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSK  148 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSC
T ss_pred             eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCE
Confidence            1111 1    23357789999999 777775            57999999999999888887777788999999 8888


Q ss_pred             EEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC------------------------cEEEEEe
Q 005956          365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG------------------------TCHFYKA  420 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg------------------------~i~l~d~  420 (667)
                      |+++  ++.|++||+.+++.............+.|+|+|+.+++.+..+                        .|.+||+
T Consensus       149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence            8877  6889999999998775433322112337899998776654332                        4689999


Q ss_pred             cCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956          421 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS  500 (667)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s  500 (667)
                      .+.+..  .+.+..    +...+.+++|+|+| ++++++  ++.|++||+.......... ....+.+++|+|+|++|++
T Consensus       227 ~~~~~~--~~~~~~----~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  296 (337)
T 1pby_B          227 ETGEMA--MREVRI----MDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             TTCCEE--EEEEEE----CSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred             CCCCce--EeecCC----CCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEE
Confidence            887664  222221    23568899999997 666666  7999999987543322221 2346789999999999999


Q ss_pred             EeCCCcEEEEEcCCCCcc
Q 005956          501 IGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       501 gs~Dg~I~iWd~~~~~~~  518 (667)
                      ++.++.|++||+.+++..
T Consensus       297 ~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          297 GGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ESBSSEEEEEETTTCCEE
T ss_pred             EcCCCcEEEEECcCCcEE
Confidence            999999999999987643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=1.1e-18  Score=185.54  Aligned_cols=280  Identities=12%  Similarity=0.081  Sum_probs=187.5

Q ss_pred             eeeccccccEEE-----EEEcCCCCEEEEEEC-CCc--EEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          216 QEIQAHKGCIWT-----LKFSPDGRYLASGGE-DGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       216 ~~l~~H~~~I~~-----v~fspdg~~Latgs~-Dg~--I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      ..|..|.+....     .+|||||++||.++. +|.  |.+||+.++..                               
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-------------------------------   72 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-------------------------------   72 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-------------------------------
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-------------------------------
Confidence            345566666666     889999999999988 674  77777765322                               


Q ss_pred             eecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEE--EeeCCCC
Q 005956          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ--FNPIDDN  363 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~--f~p~d~~  363 (667)
                                    .....+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +...+....  ++| ++.
T Consensus        73 --------------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~  137 (388)
T 3pe7_A           73 --------------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCT  137 (388)
T ss_dssp             --------------EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSS
T ss_pred             --------------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCC
Confidence                          22233455555567899999 89999999999999999998877765 344444344  477 888


Q ss_pred             EEEEEe----------------------cCCeEEEEecCCCeEEEecccCCceEEEEEee-CCCEEEEEecCC------c
Q 005956          364 YFISGS----------------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITG------T  414 (667)
Q Consensus       364 ~l~sgs----------------------~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg------~  414 (667)
                      +++...                      .+..|++||+.+++...+..+...+..++|+| ||+.|+....++      .
T Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (388)
T 3pe7_A          138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR  217 (388)
T ss_dssp             EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred             eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence            877432                      34679999999998888777778899999999 999998877643      6


Q ss_pred             EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC----cEEEEECCccee-eE-EeCCCCC---C
Q 005956          415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS----KLRILDGVDVIH-KF-KGLPKSG---S  485 (667)
Q Consensus       415 i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg----~I~iwd~~~~~~-~~-~~~~~~~---~  485 (667)
                      |.++|+.+......    ...  .....+..+.|+|||..+++++..++    .|++||+..... .+ ....+..   .
T Consensus       218 l~~~d~~~~~~~~l----~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~  291 (388)
T 3pe7_A          218 MWLINEDGTNMRKV----KTH--AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSN  291 (388)
T ss_dssp             EEEEETTSCCCEES----CCC--CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEEC
T ss_pred             EEEEeCCCCceEEe----eeC--CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeec
Confidence            77777765443211    110  00124778899999854545444333    399999874332 12 2111000   0


Q ss_pred             eEEEEEcCCCCEEEEE---------eCCCcEEEEEcCCCCccccccccC-----------ccceeEEccCCcEEEEecCC
Q 005956          486 QMSASFTTTGKHIISI---------GDDCRVYVWNYDELCFPSSKQKNS-----------VRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       486 v~~v~~spdg~~l~sg---------s~Dg~I~iWd~~~~~~~~~~~~~~-----------~~~~~~fs~dg~~lav~w~~  545 (667)
                      ...++|+|||++|+..         ..+..|++||+.+++.........           ......|+|||+.|++....
T Consensus       292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~  371 (388)
T 3pe7_A          292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV  371 (388)
T ss_dssp             TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence            1123689999988854         456789999999876543332222           34567999999999987654


Q ss_pred             CC
Q 005956          546 IG  547 (667)
Q Consensus       546 ~~  547 (667)
                      .+
T Consensus       372 ~g  373 (388)
T 3pe7_A          372 HG  373 (388)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=1e-18  Score=189.70  Aligned_cols=259  Identities=15%  Similarity=0.155  Sum_probs=171.6

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      +...++.+++++++.+|++|+.|+ |+||+........   ...      .....+.                    ...
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~---~~~------~~~~~~~--------------------~~~   84 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN---KPG------DDPNKIV--------------------DKV   84 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC---CTT------CCTTCEE--------------------ECC
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc---ccc------cCccccc--------------------ccC
Confidence            344688999999999999999998 9999875311000   000      0000000                    011


Q ss_pred             cceeeeccccceEEEEecCCC-eEE----EEeCCCcEEEEecCCC--------eE---eEEe-eCCCcEEEEEEeeCCCC
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLL----SCSMDKTVRMWQVGCN--------QC---LNVF-DHHNYVTCVQFNPIDDN  363 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~----s~s~Dg~I~iWd~~~~--------~~---~~~~-~h~~~V~~l~f~p~d~~  363 (667)
                      +... ..|...|.+++|+|++ +|+    +++.|++|+|||+.++        +.   +..+ .|...|.+++|+|.+++
T Consensus        85 ~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  163 (434)
T 2oit_A           85 QGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS  163 (434)
T ss_dssp             CCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred             cccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC
Confidence            1112 2467789999999999 777    7888999999998654        22   2333 38899999999994489


Q ss_pred             EEEEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc-CcCCC
Q 005956          364 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-KTSGN  441 (667)
Q Consensus       364 ~l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~-~~~~~  441 (667)
                      +|++++.||+|++||++++... ....|...|++++|+|+|++|++|+.||.|++||++ ..... .+..+... ..|..
T Consensus       164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~-~~~~~~~~~~~~~~  241 (434)
T 2oit_A          164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK-VIPCPPFYESDHPV  241 (434)
T ss_dssp             EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE-EECCCTTCCTTSCE
T ss_pred             EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc-cccCCcccCCCCce
Confidence            9999999999999999988654 355678899999999999999999999999999998 33221 22211111 11234


Q ss_pred             CeEEEEEccCCCeEEEE-EeCCC------cEEEEECCcc----eeeEEeC--------CCCCCeEEEEEcCCCCEEEEEe
Q 005956          442 KITGIQFSRDESQRIMI-TSEDS------KLRILDGVDV----IHKFKGL--------PKSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~-~s~dg------~I~iwd~~~~----~~~~~~~--------~~~~~v~~v~~spdg~~l~sgs  502 (667)
                      .|.+++|++++ .++++ +..+|      .+++|++.+.    ...+...        ....+...+.+-++.+++++++
T Consensus       242 ~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s  320 (434)
T 2oit_A          242 RVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAAS  320 (434)
T ss_dssp             EEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEE
T ss_pred             eEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEec
Confidence            79999999985 44443 44443      3899998643    1222221        1122223334446777766655


Q ss_pred             C-CCcEEEEEcC
Q 005956          503 D-DCRVYVWNYD  513 (667)
Q Consensus       503 ~-Dg~I~iWd~~  513 (667)
                      . .+.|.|....
T Consensus       321 ~~s~dv~vl~~~  332 (434)
T 2oit_A          321 AASTEVSILARQ  332 (434)
T ss_dssp             TTCSBCEEEEEC
T ss_pred             CCCCceeEEEec
Confidence            4 4456666644

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=4.8e-17  Score=171.54  Aligned_cols=249  Identities=14%  Similarity=0.160  Sum_probs=168.9

Q ss_pred             ccccEEEEEEcCCCCEEEEEECC----CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          221 HKGCIWTLKFSPDGRYLASGGED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~D----g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      |......++|+|||++|++++.+    +.|.+|++....                  +.                     
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~------------------g~---------------------   88 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK------------------GT---------------------   88 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT------------------TE---------------------
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC------------------Cc---------------------
Confidence            66778889999999999999986    799999987410                  00                     


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEecCCCeEeE----EeeC-----------CCcEEEEEEee
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLN----VFDH-----------HNYVTCVQFNP  359 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~~~~~~----~~~h-----------~~~V~~l~f~p  359 (667)
                        ...+.....+......+++  ++ +|++++ .+++|.+|++.....+.    ...+           ...+.+++|+|
T Consensus        89 --~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp  164 (361)
T 3scy_A           89 --LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP  164 (361)
T ss_dssp             --EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred             --EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence              0112333345556777888  55 555555 68899999997543221    1111           23468899999


Q ss_pred             CCCCEEEEEe-cCCeEEEEecCCCe-------E-------EEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCC
Q 005956          360 IDDNYFISGS-IDGKVRIWGVCEKR-------V-------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN  423 (667)
Q Consensus       360 ~d~~~l~sgs-~Dg~v~iwdl~~~~-------~-------~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~  423 (667)
                       +++++++++ .++.|.+|++....       +       .........+..++|+|||+++++++ .++.|.+|++.++
T Consensus       165 -dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          165 -DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             -TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             -CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence             888666555 47899999887533       1       22234456688999999999888877 6899999999866


Q ss_pred             cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECC----cceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956          424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--DSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKH  497 (667)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~--dg~I~iwd~~----~~~~~~~~~~~~~~v~~v~~spdg~~  497 (667)
                      ...... ... ....+......++|+|+| ++|+++..  ++.|.+|++.    ......... ....+..++|+|||++
T Consensus       244 ~~~~~~-~~~-~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~g~~~~~~~~spdg~~  319 (361)
T 3scy_A          244 MLDEIQ-TVA-ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-TGIHPRNFIITPNGKY  319 (361)
T ss_dssp             EEEEEE-EEE-SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-CSSCCCEEEECTTSCE
T ss_pred             ceEEeE-EEe-cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-CCCCCceEEECCCCCE
Confidence            543221 111 111223456899999997 56655554  5899999975    221222222 2456789999999999


Q ss_pred             EEEEe-CCCcEEEEEcC--CCCc
Q 005956          498 IISIG-DDCRVYVWNYD--ELCF  517 (667)
Q Consensus       498 l~sgs-~Dg~I~iWd~~--~~~~  517 (667)
                      |++++ .++.|.+|+++  +++.
T Consensus       320 l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          320 LLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEECCCCCEEEEEEECCCCcE
Confidence            99887 57899997654  5544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=4.7e-19  Score=204.92  Aligned_cols=269  Identities=9%  Similarity=0.013  Sum_probs=179.0

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956          227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  306 (667)
Q Consensus       227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (667)
                      .++|+|||++++++ .|+.|++||+.++..                                             ...+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---------------------------------------------~~~~~   53 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---------------------------------------------YTILS   53 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCE---------------------------------------------EEEEC
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---------------------------------------------EEEEc
Confidence            68999999766654 699999999986322                                             23333


Q ss_pred             cccc---ceEEEEecCCC-eEEEEeC---------CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          307 GHKG---DVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       307 gh~~---~V~~l~~s~~~-~l~s~s~---------Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                      +|..   .|.+++||||| +|++++.         +++|++||+.+++.+........+..++|+| |++.|+++. ++.
T Consensus        54 ~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SP-DG~~la~~~-~~~  131 (719)
T 1z68_A           54 NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSP-VGSKLAYVY-QNN  131 (719)
T ss_dssp             HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECS-STTCEEEEE-TTE
T ss_pred             cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECC-CCCEEEEEE-CCe
Confidence            3433   48999999999 7887766         7899999999998732222345788999999 999999885 789


Q ss_pred             EEEEecCCCeEEEecc--cCCce-----------------EEEEEeeCCCEEEEEecCC---------------------
Q 005956          374 VRIWGVCEKRVVDWAD--VRDVI-----------------SAICYIPDGKGFIVGSITG---------------------  413 (667)
Q Consensus       374 v~iwdl~~~~~~~~~~--~~~~v-----------------~~v~~spdg~~l~~gs~dg---------------------  413 (667)
                      |++||+.+++...+..  +...+                 .+++|+|||+.|++++.+.                     
T Consensus       132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred             EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence            9999999887665432  22212                 5899999999999988652                     


Q ss_pred             -------------cEEEEEecCCccee-eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC----CcEEEEE----CC
Q 005956          414 -------------TCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED----SKLRILD----GV  471 (667)
Q Consensus       414 -------------~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d----g~I~iwd----~~  471 (667)
                                   .|++||+.++.... ..+........+...+..++|+||+ +++++....    ..|++||    ..
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~  290 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQ  290 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCC
Confidence                         67889988765420 0111100011245678999999995 666664322    2488899    65


Q ss_pred             cce--eeEE--eCCCCCCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEEcCCCCccccccccCccceeEEccCCcE
Q 005956          472 DVI--HKFK--GLPKSGSQM-----SASFTTTGKHIIS--IGDDC--RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS  538 (667)
Q Consensus       472 ~~~--~~~~--~~~~~~~v~-----~v~~spdg~~l~s--gs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~  538 (667)
                      ...  ..+.  ...+...+.     .+.|+|||+.|+.  ...+|  .|++|++.++................++ ++..
T Consensus       291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~  369 (719)
T 1z68_A          291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDS  369 (719)
T ss_dssp             SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSE
T ss_pred             CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCE
Confidence            322  2221  012445554     7899999996654  44555  5777788776543333333333334555 7877


Q ss_pred             EEEecCC
Q 005956          539 VAVQWPG  545 (667)
Q Consensus       539 lav~w~~  545 (667)
                      +++....
T Consensus       370 i~~~~~~  376 (719)
T 1z68_A          370 LFYSSNE  376 (719)
T ss_dssp             EEEEESC
T ss_pred             EEEEEec
Confidence            7776654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.80  E-value=4.4e-18  Score=196.26  Aligned_cols=259  Identities=15%  Similarity=0.164  Sum_probs=179.6

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC-----CceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-----VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      .+..|.+.+.+++|||||++||++ .|+.|++|++.+     +....+.......         +.              
T Consensus       115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~---------~~--------------  170 (706)
T 2z3z_A          115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET---------LV--------------  170 (706)
T ss_dssp             EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT---------EE--------------
T ss_pred             EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC---------eE--------------
Confidence            344677789999999999999995 679999999986     4332111000000         00              


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEe---------------------------------CCCcEEEEec
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS---------------------------------MDKTVRMWQV  337 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s---------------------------------~Dg~I~iWd~  337 (667)
                            .+.+  ....+...+.++.|+||| +|++++                                 .+..|++||+
T Consensus       171 ------~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~  242 (706)
T 2z3z_A          171 ------YGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL  242 (706)
T ss_dssp             ------ESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred             ------cccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence                  0000  112233457889999999 888877                                 4468999999


Q ss_pred             CCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCC-----eEEEEecCCC-eEEEecc--cCC---ceEEEEEee--
Q 005956          338 GCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEK-RVVDWAD--VRD---VISAICYIP--  401 (667)
Q Consensus       338 ~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~-~~~~~~~--~~~---~v~~v~~sp--  401 (667)
                      .+++.....   .|...+.+++|+| +++.|++++.++     .|++||+.++ .......  ...   .+..++|+|  
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~  321 (706)
T 2z3z_A          243 ATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGS  321 (706)
T ss_dssp             TTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTC
T ss_pred             CCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCC
Confidence            998876655   3667899999999 999999988776     8999999998 4443321  221   246789999  


Q ss_pred             CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE-EEEccCCCeEEEEEeCCC----cEEEEECCcceee
Q 005956          402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQFSRDESQRIMITSEDS----KLRILDGVDVIHK  476 (667)
Q Consensus       402 dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~-l~~sp~g~~~l~~~s~dg----~I~iwd~~~~~~~  476 (667)
                      ||++++++..+|.+++|++.........+.      .+...+.. ++|+|+|..++++++.++    .|+.||...... 
T Consensus       322 dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~------~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-  394 (706)
T 2z3z_A          322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVT------KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-  394 (706)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSCEEEECC------CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-
T ss_pred             CCEEEEEEccCCccEEEEEECCCCEEEecC------CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-
Confidence            999999999999999998873222222221      12355766 799999755555566555    677777654322 


Q ss_pred             EEeCCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCC
Q 005956          477 FKGLPKSGSQMSASFTTTGKHIISIGDD----CRVYVWNYDELC  516 (667)
Q Consensus       477 ~~~~~~~~~v~~v~~spdg~~l~sgs~D----g~I~iWd~~~~~  516 (667)
                       ....+...+.+++|+|||++|+.+..+    +.|++||+.+++
T Consensus       395 -~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          395 -KDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             -EESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             -eeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence             222256678999999999998877544    469999998875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=3.8e-17  Score=171.26  Aligned_cols=234  Identities=14%  Similarity=0.122  Sum_probs=158.3

Q ss_pred             ccccceEEEEecCCCeEEEEeC---CCcEEEEecCCCeE--eEE-eeCCCcEEEEEEeeCCCCEEEEEe-cCCeEEEEec
Q 005956          307 GHKGDVLDLAWSNSNYLLSCSM---DKTVRMWQVGCNQC--LNV-FDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGV  379 (667)
Q Consensus       307 gh~~~V~~l~~s~~~~l~s~s~---Dg~I~iWd~~~~~~--~~~-~~h~~~V~~l~f~p~d~~~l~sgs-~Dg~v~iwdl  379 (667)
                      .+...+..++|+|++.|++++.   ++.|.+|++.+++.  +.. ..+...+..++|+| ++++|++++ .++.|.+|++
T Consensus        37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence            4456778899999995554443   68999999987763  333 23677888999999 999888887 6799999999


Q ss_pred             C-CCeEE--Eeccc----------CCceEEEEEeeCCCEEEEEecCCcEEEEEec-CCcceee-eEeeccccCcCCCCeE
Q 005956          380 C-EKRVV--DWADV----------RDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLE-KVDFHDRKKTSGNKIT  444 (667)
Q Consensus       380 ~-~~~~~--~~~~~----------~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~-~~~~~~~-~~~~~~~~~~~~~~I~  444 (667)
                      . ++...  .....          ...+.+++|+|+|+.+++...++.|.+|++. ++.+... .+...     ....+.
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----~g~~p~  190 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-----AGFGPR  190 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-----TTCCEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-----CCCCCc
Confidence            5 33322  21111          1248889999999966666678899999998 3433221 11111     124678


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCc--ce----eeEEeCCC----CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcC
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVD--VI----HKFKGLPK----SGSQMSASFTTTGKHII-SIGDDCRVYVWNYD  513 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~----~~~~~~~~----~~~v~~v~~spdg~~l~-sgs~Dg~I~iWd~~  513 (667)
                      .++|+|+|..++++...++.|.+|++..  ..    ..+.....    ...+..++|+|||++|+ +...++.|.+|++.
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            8999999744555567788999998652  21    12222111    14588899999999885 45568999999997


Q ss_pred             CC-Cccc--cccc-cCccceeEEccCCcEEEEecCCC
Q 005956          514 EL-CFPS--SKQK-NSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       514 ~~-~~~~--~~~~-~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .. ....  .... ......++|+|||++|+++....
T Consensus       271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  307 (347)
T 3hfq_A          271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT  307 (347)
T ss_dssp             GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred             CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence            32 2111  1111 22345679999999988876544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=6.1e-18  Score=176.54  Aligned_cols=237  Identities=9%  Similarity=-0.018  Sum_probs=170.8

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956          227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  306 (667)
Q Consensus       227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (667)
                      .++++++++++++++.++.|.+||+.++..                                             +..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------------------------~~~~~   38 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------------------------YKSCV   38 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------------------------EEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------------------------EEEEe
Confidence            457889999999999999999999986322                                             22333


Q ss_pred             ccc-cceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCC-------CcEEEEEEeeCCCCEEEEEecC-----
Q 005956          307 GHK-GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGSID-----  371 (667)
Q Consensus       307 gh~-~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~-------~~V~~l~f~p~d~~~l~sgs~D-----  371 (667)
                      .+. ..+..++|+|++ ++ +++..++.|.+||+.+++.+..+...       ..+.+++|+| +++++++++.+     
T Consensus        39 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~  117 (349)
T 1jmx_B           39 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLN  117 (349)
T ss_dssp             CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECS
T ss_pred             cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccc
Confidence            222 247789999998 44 45667899999999999988777532       2378899999 99999988865     


Q ss_pred             -------CeEEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc-----
Q 005956          372 -------GKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-----  436 (667)
Q Consensus       372 -------g~v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~-----  436 (667)
                             +.|.+||+.+++.   +....+...+.+++|+|+|+ +++++  +.|.+||+.+++.... +......     
T Consensus       118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~-~~~~~~~~~~~~  193 (349)
T 1jmx_B          118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVA-LPLRNWNRKGYS  193 (349)
T ss_dssp             SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEE-ECSTTCCCTTBC
T ss_pred             cccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceecc-ccccccCCcccc
Confidence                   8999999988543   23334445688999999999 66653  4499999987654322 1111000     


Q ss_pred             ---------------------------------------------------------CcCCCCeEEEEEcc-CCCeEEEE
Q 005956          437 ---------------------------------------------------------KTSGNKITGIQFSR-DESQRIMI  458 (667)
Q Consensus       437 ---------------------------------------------------------~~~~~~I~~l~~sp-~g~~~l~~  458 (667)
                                                                               ......+..++|+| ++ +++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~  272 (349)
T 1jmx_B          194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYG  272 (349)
T ss_dssp             CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEE
T ss_pred             CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEE
Confidence                                                                     00112456778889 86 56666


Q ss_pred             EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      +  ++.|.+||+.+........ ....+.+++|+|+|++|++++.++.|++||+.+++.
T Consensus       273 ~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          273 V--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             E--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence            6  8899999987644322221 234567899999999999988899999999988754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=3.5e-17  Score=177.55  Aligned_cols=215  Identities=16%  Similarity=0.136  Sum_probs=146.1

Q ss_pred             cccccEEEEEEcCCCCEEE----EEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          220 AHKGCIWTLKFSPDGRYLA----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~La----tgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .|.+.|++++|+|+|++||    +|+.|+.|+|||+.+.....             ..            .     .+  
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~-------------~~------------~-----~~--  137 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA-------------KQ------------Q-----KR--  137 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT-------------CS------------S-----CC--
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC-------------cC------------C-----cc--
Confidence            4678999999999999999    88899999999987520000             00            0     00  


Q ss_pred             cccCCcceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  372 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg  372 (667)
                        ....+..+.+|...|.+++|+|+ + +|++++.||+|++||+.++..+... .|...|++++|+| ++++|++|+.||
T Consensus       138 --~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg  214 (434)
T 2oit_A          138 --PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNG  214 (434)
T ss_dssp             --CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTS
T ss_pred             --eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCC
Confidence              00113456789999999999997 5 8999999999999999988665443 4888999999999 899999999999


Q ss_pred             eEEEEecCCCeEEEecc-------cCCceEEEEEeeCCCEEEEE-ecCC------cEEEEEecCCcce--eeeEeecccc
Q 005956          373 KVRIWGVCEKRVVDWAD-------VRDVISAICYIPDGKGFIVG-SITG------TCHFYKASGNDLK--LEKVDFHDRK  436 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~-------~~~~v~~v~~spdg~~l~~g-s~dg------~i~l~d~~~~~~~--~~~~~~~~~~  436 (667)
                      +|++||++.........       +...+.+++|++++.++++. ..+|      .+++|+++.....  .....+....
T Consensus       215 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~  294 (434)
T 2oit_A          215 TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPC  294 (434)
T ss_dssp             CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSS
T ss_pred             cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCC
Confidence            99999998332222222       22379999999988776553 3443      3899999865322  1111111110


Q ss_pred             C---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          437 K---TSGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       437 ~---~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      .   ....+...+.+.++....+++.+..+.|.|+.
T Consensus       295 ~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          295 YGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA  330 (434)
T ss_dssp             CCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred             CCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence            0   11122334445566544444555555666665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=4.6e-18  Score=197.38  Aligned_cols=271  Identities=11%  Similarity=0.063  Sum_probs=179.0

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      ...+++|+|||++|+++  ||.|++||+.++...                                             .
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------------------------------~   50 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------------------------------V   50 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------------------------------E
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------------------------------E
Confidence            35689999999999997  999999999875432                                             2


Q ss_pred             eeecccc-----ceEEEEecCCC-eEEEEeCC---------CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956          304 ELHGHKG-----DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       304 ~l~gh~~-----~V~~l~~s~~~-~l~s~s~D---------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                      .+.+|..     ...+++||||| +|+.++.+         +.+.+||+.++++.....+...+...+|+| |++.|+.+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SP-dG~~la~~  129 (740)
T 4a5s_A           51 FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYV  129 (740)
T ss_dssp             EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEE
T ss_pred             EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECC-CCCEEEEE
Confidence            2333332     23458899999 78887776         556799999999877666788999999999 99999888


Q ss_pred             ecCCeEEEEecCCCeEEEecc--cCCce-----------------EEEEEeeCCCEEEEEecCC----------------
Q 005956          369 SIDGKVRIWGVCEKRVVDWAD--VRDVI-----------------SAICYIPDGKGFIVGSITG----------------  413 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~~~~--~~~~v-----------------~~v~~spdg~~l~~gs~dg----------------  413 (667)
                      . ++.|++||+.+++...+..  ....+                 .++.|+|||+.|+.++.|.                
T Consensus       130 ~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~  208 (740)
T 4a5s_A          130 W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL  208 (740)
T ss_dssp             E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred             E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence            4 7899999999887665432  22212                 3589999999999876432                


Q ss_pred             --------------------cEEEEEecC---Ccc-eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE-eC---CCcE
Q 005956          414 --------------------TCHFYKASG---NDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SE---DSKL  465 (667)
Q Consensus       414 --------------------~i~l~d~~~---~~~-~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~-s~---dg~I  465 (667)
                                          .|++||+.+   +.. ....+........+...+..++|+||| +.++.. ..   +..|
T Consensus       209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i  287 (740)
T 4a5s_A          209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVM  287 (740)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEE
T ss_pred             CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEE
Confidence                                366677765   421 111111100000134668999999997 544443 22   2379


Q ss_pred             EEEECCcce--------eeEEeCCCCCCe-----EEEEEcCCCCEEE-EEeCC---CcEEEEEcCCCCccccccccCccc
Q 005956          466 RILDGVDVI--------HKFKGLPKSGSQ-----MSASFTTTGKHII-SIGDD---CRVYVWNYDELCFPSSKQKNSVRS  528 (667)
Q Consensus       466 ~iwd~~~~~--------~~~~~~~~~~~v-----~~v~~spdg~~l~-sgs~D---g~I~iWd~~~~~~~~~~~~~~~~~  528 (667)
                      ++||+....        ..+....+...+     ..++|+|||+.|+ ..++.   ..|++||+.++.............
T Consensus       288 ~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~  367 (740)
T 4a5s_A          288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVI  367 (740)
T ss_dssp             EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEE
T ss_pred             EEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEE
Confidence            999965422        222112234333     3688999999887 66543   478999998876654443333332


Q ss_pred             eeEEccCCcEEEEecCC
Q 005956          529 CEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       529 ~~~fs~dg~~lav~w~~  545 (667)
                      . .+.+|+..++.....
T Consensus       368 ~-~~~~d~~~i~f~~~~  383 (740)
T 4a5s_A          368 G-IEALTSDYLYYISNE  383 (740)
T ss_dssp             E-EEEECSSEEEEEESC
T ss_pred             E-EEEEeCCEEEEEEec
Confidence            2 233557766665554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=1.1e-16  Score=167.37  Aligned_cols=227  Identities=7%  Similarity=0.050  Sum_probs=169.6

Q ss_pred             ccEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          223 GCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latg-s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      ..+..++|+|+|++|+.+ ..++.|.+||..++...                                            
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--------------------------------------------  124 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK--------------------------------------------  124 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE--------------------------------------------
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE--------------------------------------------
Confidence            346789999999966555 55799999999874332                                            


Q ss_pred             ceeeecc---------ccceEEEEecCCC-eEEEEe--CCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956          302 LQELHGH---------KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       302 ~~~l~gh---------~~~V~~l~~s~~~-~l~s~s--~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg  368 (667)
                       ..+..+         ...+.+++|+|++ +++.++  .++.|.+||+.+++.+..+. +...+.+++|+| ++++++++
T Consensus       125 -~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~  202 (353)
T 3vgz_A          125 -GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTT  202 (353)
T ss_dssp             -EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEE
T ss_pred             -EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEE
Confidence             112111         1236889999998 666554  47899999999999998887 666789999999 99999999


Q ss_pred             ecCCeEEEEecCCCeEEEecc-----cCCceEEEEEeeCCCEEEEEecC-CcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          369 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~~~~-----~~~~v~~v~~spdg~~l~~gs~d-g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      +.++.|.+||+.+++......     +...+..++|+|+|+.+++++.+ +.|.+||+.+.+.... +...       . 
T Consensus       203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~-------~-  273 (353)
T 3vgz_A          203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK-VAAP-------E-  273 (353)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE-EECS-------S-
T ss_pred             cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-EEcC-------C-
Confidence            999999999999998775332     34568889999999988777654 8999999987765432 2221       1 


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      ...++|+|+|..++++...++.|.+||..+........ ....+.+++|+|+|++|+++..++
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence            25689999975455555579999999987544332222 345788999999999888776654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=1.5e-16  Score=168.39  Aligned_cols=248  Identities=8%  Similarity=0.025  Sum_probs=166.5

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcC-CCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +...+..++|+|||++|++++.+ .|.+|++. ++....                                         
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-----------------------------------------   75 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-----------------------------------------   75 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-----------------------------------------
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-----------------------------------------
Confidence            33467889999999999999988 99999986 422110                                         


Q ss_pred             CcceeeeccccceEEEEecCCC-e-E-EEEe-------------CCCcEEEEecC-CCeEeEEee-----CCCcEEEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-Y-L-LSCS-------------MDKTVRMWQVG-CNQCLNVFD-----HHNYVTCVQF  357 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~-l-~s~s-------------~Dg~I~iWd~~-~~~~~~~~~-----h~~~V~~l~f  357 (667)
                        +.....+ +.+.+++|+|++ + + +++.             .++++.+|++. .++....+.     +...+.+++|
T Consensus        76 --~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  152 (365)
T 1jof_A           76 --EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF  152 (365)
T ss_dssp             --EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE
T ss_pred             --eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE
Confidence              0111111 124458899999 3 3 3442             68999999997 465544332     4568999999


Q ss_pred             eeCCCCEEEEEec-CCeEEEEecC-CCeEEEe--c---ccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecC--Cccee
Q 005956          358 NPIDDNYFISGSI-DGKVRIWGVC-EKRVVDW--A---DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG--NDLKL  427 (667)
Q Consensus       358 ~p~d~~~l~sgs~-Dg~v~iwdl~-~~~~~~~--~---~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~--~~~~~  427 (667)
                      +| ++++++++.. ++.|++||+. +++....  .   .+...+..++|+|||+++++++. ++.+.+|++..  +++..
T Consensus       153 sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  231 (365)
T 1jof_A          153 DP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             CT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            99 9998887664 6799999998 6765321  1   12456899999999999988775 68999998763  33321


Q ss_pred             --eeEee-ccccCcCCC------CeEEEE-EccCCCeEEEEEeCC-C-----cEEEEECC-cceee--EE-eCCCCCCeE
Q 005956          428 --EKVDF-HDRKKTSGN------KITGIQ-FSRDESQRIMITSED-S-----KLRILDGV-DVIHK--FK-GLPKSGSQM  487 (667)
Q Consensus       428 --~~~~~-~~~~~~~~~------~I~~l~-~sp~g~~~l~~~s~d-g-----~I~iwd~~-~~~~~--~~-~~~~~~~v~  487 (667)
                        ..+.. ......+..      .+..++ |+||| ++|++++.+ +     .|.+|++. +....  .. ...+...+.
T Consensus       232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~  310 (365)
T 1jof_A          232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH  310 (365)
T ss_dssp             EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred             ccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcc
Confidence              11111 110011111      588999 99997 566665432 3     89999975 22211  11 111334456


Q ss_pred             EEEEcC---CCCEEEEEeCC-CcEEEEEcCCC
Q 005956          488 SASFTT---TGKHIISIGDD-CRVYVWNYDEL  515 (667)
Q Consensus       488 ~v~~sp---dg~~l~sgs~D-g~I~iWd~~~~  515 (667)
                      .++|+|   ||++|++++.+ +.|.||+++..
T Consensus       311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            789999   89999999865 89999999765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=4.5e-16  Score=162.26  Aligned_cols=218  Identities=9%  Similarity=0.059  Sum_probs=157.4

Q ss_pred             EEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCC--cEEEEEEeeCCCCEE-EEEecCCeEEEEecCCCeEEEecc
Q 005956          314 DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWAD  389 (667)
Q Consensus       314 ~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~d~~~l-~sgs~Dg~v~iwdl~~~~~~~~~~  389 (667)
                      .+++++++ ++++++.+++|++||+.+++.+..+....  .+..++|+| +++++ +++..++.|.+||+.+++......
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            34677777 88899999999999999999988887554  688999999 88765 455578999999999988765433


Q ss_pred             c-------CCceEEEEEeeCCCEEEEEecC------------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          390 V-------RDVISAICYIPDGKGFIVGSIT------------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       390 ~-------~~~v~~v~~spdg~~l~~gs~d------------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      .       ...+..++|+|+|+++++++.+            +.|.+||+.+++..........     ...+.+++|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~  157 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----PRQVYLMRAAD  157 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----CSSCCCEEECT
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-----CCcccceeECC
Confidence            2       2237889999999999998866            8999999987543222111111     24588899999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcce--eeEEeCC-----------------------------------------------
Q 005956          451 DESQRIMITSEDSKLRILDGVDVI--HKFKGLP-----------------------------------------------  481 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~-----------------------------------------------  481 (667)
                      +| + +++++.  .|++||..+..  ..+....                                               
T Consensus       158 dg-~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  233 (349)
T 1jmx_B          158 DG-S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  233 (349)
T ss_dssp             TS-C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             CC-c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence            97 4 555543  49999976432  2221110                                               


Q ss_pred             -------------------CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEE
Q 005956          482 -------------------KSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       482 -------------------~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav  541 (667)
                                         +...+..++|+| +|++|+++  ++.|++||+.+++.............+.|+|||..|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE
T ss_pred             eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEE
Confidence                               011345678889 99999988  88999999998875443333333456799999998888


Q ss_pred             ec
Q 005956          542 QW  543 (667)
Q Consensus       542 ~w  543 (667)
                      +.
T Consensus       312 ~~  313 (349)
T 1jmx_B          312 GG  313 (349)
T ss_dssp             ES
T ss_pred             ec
Confidence            53

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=1e-16  Score=170.50  Aligned_cols=267  Identities=10%  Similarity=0.078  Sum_probs=174.9

Q ss_pred             ccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          223 GCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      ..+..++|||||++||.+...   ..|.+|++.++..                                           
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-------------------------------------------   72 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-------------------------------------------   72 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-------------------------------------------
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-------------------------------------------
Confidence            337788999999998887653   3677778775321                                           


Q ss_pred             Ccceeeeccccc-eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEE-------------------EEE
Q 005956          300 SPLQELHGHKGD-VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC-------------------VQF  357 (667)
Q Consensus       300 ~~~~~l~gh~~~-V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~-------------------l~f  357 (667)
                         ..+..+... ...+.|+|++ .|+.++.++.|++||+.+++....+. +......                   +.|
T Consensus        73 ---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~  149 (396)
T 3c5m_A           73 ---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW  149 (396)
T ss_dssp             ---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred             ---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc
Confidence               111122222 3337899999 88899999999999999988776665 3332222                   245


Q ss_pred             eeCCCCEEEEE-----ecCCeEEEEecCCCeEEEecccCCceEEEEEee-CCCEEEEEecC------CcEEEEEecCCcc
Q 005956          358 NPIDDNYFISG-----SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GTCHFYKASGNDL  425 (667)
Q Consensus       358 ~p~d~~~l~sg-----s~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~d------g~i~l~d~~~~~~  425 (667)
                      +| +++.++.+     ..+..|++||+.+++......+...+..+.|+| +|+.|+..+.+      ..|.+||+.+...
T Consensus       150 sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (396)
T 3c5m_A          150 QP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV  228 (396)
T ss_dssp             CC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred             CC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence            66 55555443     356689999999988777667777899999999 88878776654      3577888765443


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC----CcEEEEECCccee-eEEeCCCCCCeEEEEEcC-CCCEEE
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED----SKLRILDGVDVIH-KFKGLPKSGSQMSASFTT-TGKHII  499 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d----g~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp-dg~~l~  499 (667)
                      ...    ...  .....+..+.|+|+|..+++++..+    +.|++||+..... .+...  . ... +.|+| ||++|+
T Consensus       229 ~~l----~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l~  298 (396)
T 3c5m_A          229 RKI----KEH--AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLMV  298 (396)
T ss_dssp             EES----SCC--CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEEE
T ss_pred             eEe----ecc--CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceEE
Confidence            211    100  0013578899999974444443322    3499999864322 22221  1 123 88999 999988


Q ss_pred             EEe----------------CCCcEEEEEcCCCCccccccccC-----------ccceeEEccCCcEEEEecCCC
Q 005956          500 SIG----------------DDCRVYVWNYDELCFPSSKQKNS-----------VRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       500 sgs----------------~Dg~I~iWd~~~~~~~~~~~~~~-----------~~~~~~fs~dg~~lav~w~~~  546 (667)
                      +++                .+..|++||+.++..........           ......|+|||..|++.....
T Consensus       299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~  372 (396)
T 3c5m_A          299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE  372 (396)
T ss_dssp             EEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred             EecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence            765                34789999998876533322221           134468999999998876544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.72  E-value=4.5e-15  Score=156.32  Aligned_cols=235  Identities=10%  Similarity=0.076  Sum_probs=154.5

Q ss_pred             cccceEEEEecCCC-eEEEEeCC----CcEEEEecCC--CeEe--EEee-CCCcEEEEEEeeCCCCEEEEEe-cCCeEEE
Q 005956          308 HKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGC--NQCL--NVFD-HHNYVTCVQFNPIDDNYFISGS-IDGKVRI  376 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s~D----g~I~iWd~~~--~~~~--~~~~-h~~~V~~l~f~p~d~~~l~sgs-~Dg~v~i  376 (667)
                      |...+..++|+|++ +|++++.+    +.|.+|++..  ++..  .... +......+++   ++++|++++ .++.|.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence            66778889999999 78888875    7999998865  4433  2333 4556777777   567666665 5789999


Q ss_pred             EecCCCeEE-Ee---cc-----------cCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcc----e-eeeE-eecc
Q 005956          377 WGVCEKRVV-DW---AD-----------VRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL----K-LEKV-DFHD  434 (667)
Q Consensus       377 wdl~~~~~~-~~---~~-----------~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~----~-~~~~-~~~~  434 (667)
                      |++.....+ ..   ..           ....+.+++|+|+|++++++. .++.+.+|++.....    . .... ....
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            999753321 11   01           122358899999999776655 478999999986542    1 1100 0000


Q ss_pred             ccCcCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCcce----eeEEe-CCCCCCeEEEEEcCCCCEEEEEeCC--Cc
Q 005956          435 RKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGDD--CR  506 (667)
Q Consensus       435 ~~~~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~~~----~~~~~-~~~~~~v~~v~~spdg~~l~sgs~D--g~  506 (667)
                      ........+..++|+|+| +++++++ .++.|.+||+....    ..+.. ..+......++|+|||++|+++..+  +.
T Consensus       205 ~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~  283 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG  283 (361)
T ss_dssp             EECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred             eecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence            011123567899999997 5565555 68999999976321    11211 1233456899999999999777654  89


Q ss_pred             EEEEEcC--CCCcccc--ccccCccceeEEccCCcEEEEecCCC
Q 005956          507 VYVWNYD--ELCFPSS--KQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       507 I~iWd~~--~~~~~~~--~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      |.+|+++  ++.....  .........+.|+|||++|+++....
T Consensus       284 i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          284 VAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             EEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT
T ss_pred             EEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC
Confidence            9999996  3432221  11123445679999999998876543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=7.1e-15  Score=149.46  Aligned_cols=247  Identities=11%  Similarity=0.165  Sum_probs=175.8

Q ss_pred             ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      .+|-..+.+|+++++|+++++...++.|.+||... ..... +.                                    
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~-~~------------------------------------   67 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQ-FG------------------------------------   67 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEE-EC------------------------------------
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEE-ec------------------------------------
Confidence            35667899999999999999888899999999763 11100 00                                    


Q ss_pred             CCcceeeeccccceEEEEe-cCCCeEEEEeC--CCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          299 ESPLQELHGHKGDVLDLAW-SNSNYLLSCSM--DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~-s~~~~l~s~s~--Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                      .  .....+|...+..+++ .+++.|+.+..  ++.|++|| .+++.+..+.  +...+.++++.| +++++++...++.
T Consensus        68 ~--~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~  143 (286)
T 1q7f_A           68 E--CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMR  143 (286)
T ss_dssp             C--BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred             c--cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCE
Confidence            0  0001234567889999 57775554443  88999999 5677777664  445789999999 8888888778899


Q ss_pred             EEEEecCCCeEEEec--ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          374 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       374 v~iwdl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      |.+||........+.  .....+..++++|+|+.+++...++.|.+||......  ..+...    .+...+..++++++
T Consensus       144 i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~----g~~~~p~~i~~d~~  217 (286)
T 1q7f_A          144 VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGE----GITNYPIGVGINSN  217 (286)
T ss_dssp             EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCT----TTSCSEEEEEECTT
T ss_pred             EEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccC----CccCCCcEEEECCC
Confidence            999997654443332  3345689999999998777777899999999754321  112111    11256889999999


Q ss_pred             CCeEEEEEeCCC-cEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          452 ESQRIMITSEDS-KLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       452 g~~~l~~~s~dg-~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      | .++++...++ .|.+||.. +....+........+.+++++|+|+++++ +.|+.|++|++...
T Consensus       218 G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          218 G-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             C-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             C-CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            6 6777777775 99999965 34455555433445789999999987776 67999999998654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.71  E-value=1.8e-16  Score=183.14  Aligned_cols=269  Identities=10%  Similarity=0.062  Sum_probs=176.0

Q ss_pred             cEEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          224 CIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~---------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .|.+++|||||++||+++.         |+.|++||+.++....                                    
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~------------------------------------  104 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR------------------------------------  104 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------------------------------
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc------------------------------------
Confidence            3899999999999999887         7899999998642200                                    


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcE-----------------EE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TC  354 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V-----------------~~  354 (667)
                             ...+   ...+..++|+||| .|+.+. ++.|++|++.+++..+...  +...|                 .+
T Consensus       105 -------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A          105 -------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             -------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             -------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence                   0111   1357889999999 777765 7899999999887765432  22223                 48


Q ss_pred             EEEeeCCCCEEEEEecCC----------------------------------eEEEEecCCCeEE---Ee------cccC
Q 005956          355 VQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRVV---DW------ADVR  391 (667)
Q Consensus       355 l~f~p~d~~~l~sgs~Dg----------------------------------~v~iwdl~~~~~~---~~------~~~~  391 (667)
                      ++|+| |+++|++++.|.                                  .|++||+.+++..   .+      ..+.
T Consensus       174 ~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          174 LWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             EEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             EEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            99999 999999988652                                  7899999987642   22      2466


Q ss_pred             CceEEEEEeeCCCEEEEEecCC----cEEEEE----ecCCcceeeeEeeccccCcCCCCeE-----EEEEccCCCeEEE-
Q 005956          392 DVISAICYIPDGKGFIVGSITG----TCHFYK----ASGNDLKLEKVDFHDRKKTSGNKIT-----GIQFSRDESQRIM-  457 (667)
Q Consensus       392 ~~v~~v~~spdg~~l~~gs~dg----~i~l~d----~~~~~~~~~~~~~~~~~~~~~~~I~-----~l~~sp~g~~~l~-  457 (667)
                      ..+..++|+||++.+++....+    .|.+||    +.+++........   ...+...+.     .+.|+|||..+++ 
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI---EESRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE---EECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc---cccCCceEccccCCccEECCCCCeEEEE
Confidence            7789999999987766644332    488888    6554432211000   011224444     7899999855444 


Q ss_pred             EEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCC--CC--cccccc----
Q 005956          458 ITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDE--LC--FPSSKQ----  522 (667)
Q Consensus       458 ~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~--~~--~~~~~~----  522 (667)
                      ++..++  .|++||+..... .....+...+..+.++ +++.|+..+.+     +.+++|.+..  +.  ......    
T Consensus       330 ~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~  407 (719)
T 1z68_A          330 FSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRK  407 (719)
T ss_dssp             EECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTT
T ss_pred             EEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCC
Confidence            344555  566677653321 1122244557777777 88888777655     7888998764  31  111111    


Q ss_pred             ccCccceeEEccCCcEEEEecCC
Q 005956          523 KNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       523 ~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      .........|+|||..+++....
T Consensus       408 ~~~~~~~~~~s~dg~~l~~~~s~  430 (719)
T 1z68_A          408 ERCQYYTASFSDYAKYYALVCYG  430 (719)
T ss_dssp             TTBCBEEEEECGGGSSEEEEECC
T ss_pred             CCCceEEEEECCCCCEEEEEcCC
Confidence            11233457899999988876543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=2.7e-15  Score=158.59  Aligned_cols=271  Identities=11%  Similarity=0.112  Sum_probs=180.3

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEEC----------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~----------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (667)
                      ..+..+..+  .++|+|||++|+++..          ++.|.+||+.+....                            
T Consensus        45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~----------------------------   94 (361)
T 2oiz_A           45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE----------------------------   94 (361)
T ss_dssp             EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE----------------------------
T ss_pred             EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE----------------------------
Confidence            455566666  8999999999999873          678999998764321                            


Q ss_pred             ceeecCCCcccccCCcceeee------ccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEE-eeCCCcEEEE
Q 005956          286 VPVVIPDEVFQIEESPLQELH------GHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCV  355 (667)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~------gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~-~~h~~~V~~l  355 (667)
                                       .++.      .+......++++|+| +|+++..  +++|.+||+.+++.+.. +..... ..+
T Consensus        95 -----------------~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v  156 (361)
T 2oiz_A           95 -----------------KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSV  156 (361)
T ss_dssp             -----------------EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEE
T ss_pred             -----------------EEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-cee
Confidence                             1111      122456778999999 7776653  68999999999999888 665432 335


Q ss_pred             EEeeCCCCEEEEEecCCeEEEEecCC-CeEEE------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          356 QFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       356 ~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~~~~------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      .+.|.....+++.+.||.+.+|++.. +++..      ..........+.++|++..++..+.++.+.++|+........
T Consensus       157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~  236 (361)
T 2oiz_A          157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD  236 (361)
T ss_dssp             EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE
T ss_pred             EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceec
Confidence            67784457888899999999999865 55441      111111222344578888888888999999999976543322


Q ss_pred             -eEeeccccCcC----CCCeEEEEEccCCCeEEEEEe----------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956          429 -KVDFHDRKKTS----GNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       429 -~~~~~~~~~~~----~~~I~~l~~sp~g~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp  493 (667)
                       .+.........    ......++|+|++...+++..          ..+.|.+||+.+.........+.  +..++|+|
T Consensus       237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp  314 (361)
T 2oiz_A          237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ  314 (361)
T ss_dssp             EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET
T ss_pred             ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC
Confidence             12111100000    011123789999755444443          13589999987654443333244  89999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC--Cccccc-cccCccceeEEccCCc
Q 005956          494 TGKHIISIGDDCRVYVWNYDEL--CFPSSK-QKNSVRSCEHFFSEGV  537 (667)
Q Consensus       494 dg~~l~sgs~Dg~I~iWd~~~~--~~~~~~-~~~~~~~~~~fs~dg~  537 (667)
                      ||++|++++. +.|.|||..++  +..... ........+.|+|+|.
T Consensus       315 dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          315 QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            9999999887 99999999998  654442 3333444568888875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.70  E-value=4.9e-16  Score=175.04  Aligned_cols=235  Identities=7%  Similarity=0.038  Sum_probs=170.3

Q ss_pred             eecccc-ccEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          217 EIQAHK-GCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       217 ~l~~H~-~~I~~v~fspdg~~Latgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      .+..|. ..|..++|||| +++++++.   +...+||.+.....                                    
T Consensus        58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~------------------------------------  100 (582)
T 3o4h_A           58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP------------------------------------  100 (582)
T ss_dssp             ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST------------------------------------
T ss_pred             eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC------------------------------------
Confidence            344555 68999999999 88888875   55667776642000                                    


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                            +... .+..+. .+...+|+|++  .+++++.++.+.+||+.++++.....+..  .+++|+| |+++|++++.
T Consensus       101 ------g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~  169 (582)
T 3o4h_A          101 ------GEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGF  169 (582)
T ss_dssp             ------TCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEE
T ss_pred             ------Cccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEE
Confidence                  0001 111111 12245666666  44444455555699999998877776554  8899999 9999998887


Q ss_pred             C----CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC--cEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          371 D----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       371 D----g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      +    +.|++||+.+++...+..+...+..++|+|||+.|+++..+|  .|++||+.+++.. . +  ..    +...+.
T Consensus       170 ~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~-~--~~----~~~~~~  241 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D-L--EL----PSKDFS  241 (582)
T ss_dssp             EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E-C--CC----SCSHHH
T ss_pred             cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E-c--cC----CCcChh
Confidence            7    789999999999888888888899999999999999888888  8999999877654 1 1  11    123344


Q ss_pred             EEE--------EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcC
Q 005956          445 GIQ--------FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD  513 (667)
Q Consensus       445 ~l~--------~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---~I~iWd~~  513 (667)
                      .+.        |+||| .++++++.++.+++|++  ... ..  .....+.+++|+ +++++++++.+.   .|++|+..
T Consensus       242 ~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~-~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          242 SYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER-VE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             HHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE-EC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             hhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe-ec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            445        99998 89999999999999998  211 11  244678899999 999999988774   47777766


Q ss_pred             C
Q 005956          514 E  514 (667)
Q Consensus       514 ~  514 (667)
                      +
T Consensus       315 ~  315 (582)
T 3o4h_A          315 E  315 (582)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=4.9e-15  Score=156.71  Aligned_cols=230  Identities=8%  Similarity=0.074  Sum_probs=156.4

Q ss_pred             ccceEEEEecCCC-eEEEEeCCCcEEEEecC-CCeEeEEeeC--CCcEEEEEEeeCCCCE--EEEEe-------------
Q 005956          309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLNVFDH--HNYVTCVQFNPIDDNY--FISGS-------------  369 (667)
Q Consensus       309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~-~~~~~~~~~h--~~~V~~l~f~p~d~~~--l~sgs-------------  369 (667)
                      ...+..++|+|++ +|++++.+ .|.+|++. +++......+  ...+.+++|+| ++++  ++++.             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeec
Confidence            3467889999999 78888888 99999997 7877654432  13356689999 8884  44543             


Q ss_pred             cCCeEEEEecC-CCeEEEec-----ccCCceEEEEEeeCCCEEEEEec-CCcEEEEEec-CCcceee-eEeeccccCcCC
Q 005956          370 IDGKVRIWGVC-EKRVVDWA-----DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS-GNDLKLE-KVDFHDRKKTSG  440 (667)
Q Consensus       370 ~Dg~v~iwdl~-~~~~~~~~-----~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~-~~~~~~~-~~~~~~~~~~~~  440 (667)
                      .++.+.+|++. .+++....     .+...+.+++|+|||++++++.. ++.|.+|++. +++.... .+...    .+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~----~~g  192 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----DPG  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----STT
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC----CCC
Confidence            68999999997 45543221     24567999999999998887764 6799999998 5554321 11111    123


Q ss_pred             CCeEEEEEccCCCeEEEEEe-CCCcEEEEECC--ccee-----eEEeCCC-----CC------CeEEEE-EcCCCCEEEE
Q 005956          441 NKITGIQFSRDESQRIMITS-EDSKLRILDGV--DVIH-----KFKGLPK-----SG------SQMSAS-FTTTGKHIIS  500 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~--~~~~-----~~~~~~~-----~~------~v~~v~-~spdg~~l~s  500 (667)
                      ..+..++|+|+| +++++++ .++.|.+|+..  +...     .+.....     ..      .+..++ |+|||++|++
T Consensus       193 ~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v  271 (365)
T 1jof_A          193 DHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             CCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence            568999999997 5666655 47899999753  2211     1222111     11      478999 9999999987


Q ss_pred             EeCCC------cEEEEEcC-CCCcccc---c-cccCccceeEEcc---CCcEEEEecCC
Q 005956          501 IGDDC------RVYVWNYD-ELCFPSS---K-QKNSVRSCEHFFS---EGVSVAVQWPG  545 (667)
Q Consensus       501 gs~Dg------~I~iWd~~-~~~~~~~---~-~~~~~~~~~~fs~---dg~~lav~w~~  545 (667)
                      ++.+.      .|.+|+++ +++....   . ........++|+|   ||++|+++-..
T Consensus       272 ~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence            76432      89999996 4543221   1 1222344578999   89999987554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=2.3e-15  Score=172.14  Aligned_cols=248  Identities=9%  Similarity=-0.010  Sum_probs=171.2

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEE--ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latg--s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      +.+.+|...|..++|++++-++++.  +.++...||....+                                       
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------------   57 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD---------------------------------------   57 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT---------------------------------------
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC---------------------------------------
Confidence            4567899999999999988788887  66889999986421                                       


Q ss_pred             cccccCCcceeeeccccceE---------EEEec--CCC-e-EEEEeC-CCcEEEEecC--C-CeEeEEee-----CCCc
Q 005956          294 VFQIEESPLQELHGHKGDVL---------DLAWS--NSN-Y-LLSCSM-DKTVRMWQVG--C-NQCLNVFD-----HHNY  351 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~---------~l~~s--~~~-~-l~s~s~-Dg~I~iWd~~--~-~~~~~~~~-----h~~~  351 (667)
                            .....+..|...+.         ...|+  ||+ . |+.++. +..|.+|++.  + +.......     |...
T Consensus        58 ------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~  131 (662)
T 3azo_A           58 ------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLR  131 (662)
T ss_dssp             ------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEE
T ss_pred             ------CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcc
Confidence                  11222223333333         44454  888 6 665544 5567777766  3 54444334     5667


Q ss_pred             EEEEEEeeCCCCEEEEEecC----------CeEEEEecCC------CeEEEec-ccCCceEEEEEeeCCCEEEEEecCC-
Q 005956          352 VTCVQFNPIDDNYFISGSID----------GKVRIWGVCE------KRVVDWA-DVRDVISAICYIPDGKGFIVGSITG-  413 (667)
Q Consensus       352 V~~l~f~p~d~~~l~sgs~D----------g~v~iwdl~~------~~~~~~~-~~~~~v~~v~~spdg~~l~~gs~dg-  413 (667)
                      +..++|+| |++.|++++.+          ..|++||+.+      ++...+. .+...+..++|+|||++|+.++.++ 
T Consensus       132 ~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~  210 (662)
T 3azo_A          132 WADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP  210 (662)
T ss_dssp             EEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred             ccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence            89999999 99999998877          5899999998      7777766 6667888999999999999887553 


Q ss_pred             -------cEEEEEec-CCcc-eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCcce-eeEEeCC
Q 005956          414 -------TCHFYKAS-GNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGLP  481 (667)
Q Consensus       414 -------~i~l~d~~-~~~~-~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~~-~~~~~~~  481 (667)
                             .|.+||+. ++.. ....+...     +...+..+.|+|||. ++++++.++  .|++||..... ..+.. .
T Consensus       211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-----~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~  283 (662)
T 3azo_A          211 RMPWEGTELKTARVTEDGRFADTRTLLGG-----PEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR-R  283 (662)
T ss_dssp             CCTTTCEEEEEEEECTTSCEEEEEEEEEE-----TTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC-C
T ss_pred             CCCCCCcEEEEEEECCCCcccccEEeCCC-----CCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc-c
Confidence                   79999998 4421 11122111     135789999999984 888888888  66667753321 11111 1


Q ss_pred             CCCC--------eEEEEEcCCCCEEEEEeCCCcEEEE--EcCCCCc
Q 005956          482 KSGS--------QMSASFTTTGKHIISIGDDCRVYVW--NYDELCF  517 (667)
Q Consensus       482 ~~~~--------v~~v~~spdg~~l~sgs~Dg~I~iW--d~~~~~~  517 (667)
                      +...        +..++|+|+++++++++. +.++||  |+.++..
T Consensus       284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~  328 (662)
T 3azo_A          284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL  328 (662)
T ss_dssp             SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE
T ss_pred             cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE
Confidence            1111        457899999999999998 999999  5555543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.64  E-value=1.9e-14  Score=152.68  Aligned_cols=249  Identities=11%  Similarity=0.055  Sum_probs=162.3

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      +...+|...+..+.|+|||++|+.++.++.|.+||+.++...                                      
T Consensus        74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~--------------------------------------  115 (388)
T 3pe7_A           74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN--------------------------------------  115 (388)
T ss_dssp             ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE--------------------------------------
T ss_pred             EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce--------------------------------------
Confidence            334456666667889999999999999999999999874322                                      


Q ss_pred             cccCCcceeeeccccceEEEE--ecCCC-eEEE----------------------EeCCCcEEEEecCCCeEeEEeeCCC
Q 005956          296 QIEESPLQELHGHKGDVLDLA--WSNSN-YLLS----------------------CSMDKTVRMWQVGCNQCLNVFDHHN  350 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~--~s~~~-~l~s----------------------~s~Dg~I~iWd~~~~~~~~~~~h~~  350 (667)
                             ..+..+...+....  +++++ +++.                      ...+..|.+||+.+++......+..
T Consensus       116 -------~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~  188 (388)
T 3pe7_A          116 -------VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ  188 (388)
T ss_dssp             -------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS
T ss_pred             -------eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc
Confidence                   12223333333333  36777 4442                      2244789999999998887777888


Q ss_pred             cEEEEEEeeCCCCEEEEEecC------CeEEEEecCCCeEEEecccC--CceEEEEEeeCCCEEEEEec-CC----cEEE
Q 005956          351 YVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVR--DVISAICYIPDGKGFIVGSI-TG----TCHF  417 (667)
Q Consensus       351 ~V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~~~~~~~~~~--~~v~~v~~spdg~~l~~gs~-dg----~i~l  417 (667)
                      .+..++|+|.+++.|+.+..+      ..|.++|+.++....+..+.  ..+..++|+|||+.|+..+. ++    .|.+
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred             cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence            899999999556777766653      37888898887766655554  35788999999998866543 22    3999


Q ss_pred             EEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE--------eCCCcEEEEECCcce-eeEEeCCCCC----
Q 005956          418 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT--------SEDSKLRILDGVDVI-HKFKGLPKSG----  484 (667)
Q Consensus       418 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~--------s~dg~I~iwd~~~~~-~~~~~~~~~~----  484 (667)
                      ||+.+++.... ......... ......+.|+|+|..++++.        ..+..|++||+.... ..+..  +..    
T Consensus       269 ~d~~~g~~~~l-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~  344 (388)
T 3pe7_A          269 ADPETLENRQL-TSMPACSHL-MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR--HDTSWKV  344 (388)
T ss_dssp             ECTTTCCEEEE-EEECCEEEE-EECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEE--CCCCCCC
T ss_pred             EecCCCceEEE-EcCCCceee-eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc--ccCcccc
Confidence            99988764322 111110000 00011237999974444333        456789999987432 33333  233    


Q ss_pred             -------CeEEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 005956          485 -------SQMSASFTTTGKHIISIGD-DCRVYVWNYD  513 (667)
Q Consensus       485 -------~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~  513 (667)
                             .+..++|+|||++|+.++. +|...||.++
T Consensus       345 ~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          345 FEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                   4678899999998887664 6666666543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=3.7e-14  Score=147.39  Aligned_cols=265  Identities=12%  Similarity=0.094  Sum_probs=181.3

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ..|+++.|++++..++..+.++.++.|.-                                                ...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~   37 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA------------------------------------------------EPW   37 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC------------------------------------------------EEE
T ss_pred             cccceeeecCCccceeEEeecccCccccc------------------------------------------------cee
Confidence            44777888888887777777888888821                                                224


Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecC----CeEEE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID----GKVRI  376 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~D----g~v~i  376 (667)
                      ..+.++...+.+++|++++ +++++..++.|.+||..+++..... .+...+.+++++| +++++++...+    +.|.+
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence            4555666778999999999 5567788899999999988876655 4667899999999 88888777666    68999


Q ss_pred             EecCCCeEEEec---ccCCceEEEEEeeCCCEEEEEec------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          377 WGVCEKRVVDWA---DVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       377 wdl~~~~~~~~~---~~~~~v~~v~~spdg~~l~~gs~------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      ||..++......   .....+..++++|+|+.+++...      .+.|..||..+.....  +.. .     ...+..++
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~-~-----~~~~~~i~  188 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQ-N-----ISVANGIA  188 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEE-E-----ESSEEEEE
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eec-C-----CCcccceE
Confidence            999887765322   23456899999999987776543      2445555544433321  111 1     13578999


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCc---ceeeE-----EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVD---VIHKF-----KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~-----~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      |+|+|..++++.+.++.|++||...   ....+     ........+..++++++|+++++...++.|++||.+......
T Consensus       189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~  268 (333)
T 2dg1_A          189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQ  268 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEE
Confidence            9999744555666788999999742   22211     111112467889999999988888788999999985432211


Q ss_pred             cccccC------ccceeEEccCCcEEEEecC
Q 005956          520 SKQKNS------VRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       520 ~~~~~~------~~~~~~fs~dg~~lav~w~  544 (667)
                      ......      ....++|++|+..|.++..
T Consensus       269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            111111      3456788999877766544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.63  E-value=6.6e-14  Score=162.38  Aligned_cols=269  Identities=9%  Similarity=0.078  Sum_probs=171.4

Q ss_pred             EEEEEEcCCCCEEEEEECC---------CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          225 IWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~D---------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ...+.|||||++|+.++.+         +.+.+||+.++.                                        
T Consensus        64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~----------------------------------------  103 (740)
T 4a5s_A           64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ----------------------------------------  103 (740)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----------------------------------------
T ss_pred             ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc----------------------------------------
Confidence            3458899999999999886         556799998632                                        


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcE-----------------EEE
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TCV  355 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V-----------------~~l  355 (667)
                            ...+..|...+...+||||| .|+.+ .|+.|++|++.+++..+...  +...+                 ..+
T Consensus       104 ------~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~  176 (740)
T 4a5s_A          104 ------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (740)
T ss_dssp             ------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             ------EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence                  22345677789999999999 77766 57899999999887655432  22223                 248


Q ss_pred             EEeeCCCCEEEEEecCC------------------------------------eEEEEecCC---C---eEEEecc----
Q 005956          356 QFNPIDDNYFISGSIDG------------------------------------KVRIWGVCE---K---RVVDWAD----  389 (667)
Q Consensus       356 ~f~p~d~~~l~sgs~Dg------------------------------------~v~iwdl~~---~---~~~~~~~----  389 (667)
                      .|+| |+++|+.++.|.                                    +|++||+.+   +   +...+..    
T Consensus       177 ~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~  255 (740)
T 4a5s_A          177 WWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM  255 (740)
T ss_dssp             EECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred             EECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence            9999 999999876432                                    488899988   7   5544432    


Q ss_pred             --cCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCc----ceee-eEeeccccCcCCCCe-----EEEEEccCCC
Q 005956          390 --VRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGND----LKLE-KVDFHDRKKTSGNKI-----TGIQFSRDES  453 (667)
Q Consensus       390 --~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~----~~~~-~~~~~~~~~~~~~~I-----~~l~~sp~g~  453 (667)
                        +...+..++|+|||+.++.....    ..|.+||+.+++    .... .+...    .+...|     ..+.|+|||.
T Consensus       256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~----~~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM----STTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE----CSSSCSSSSSCCCCEECTTSS
T ss_pred             CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec----cCCceEccCcCCCceEcCCCC
Confidence              66679999999999977765433    379999999876    1111 11001    112222     3678999985


Q ss_pred             eEEEEEe-CCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCCcc-ccc-
Q 005956          454 QRIMITS-EDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-------CRVYVWNYDELCFP-SSK-  521 (667)
Q Consensus       454 ~~l~~~s-~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-------g~I~iWd~~~~~~~-~~~-  521 (667)
                      .+++..+ .+|  .|++||.......... .....+..+. .+|++.|+..+..       ..|+..++.++... ... 
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~  409 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKKDCTFIT-KGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSC  409 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSSCEESC-CSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESST
T ss_pred             EEEEEEEcCCCceEEEEEECCCCceEecc-cCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecc
Confidence            5442554 444  6888887643222111 1334455443 2446666554433       24555555554322 111 


Q ss_pred             c---ccCccceeEEccCCcEEEEecCCCC
Q 005956          522 Q---KNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       522 ~---~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      .   .........|+|+|.++++.+....
T Consensus       410 ~~~~~~~~~~~~~~S~dg~~~~~~~s~~~  438 (740)
T 4a5s_A          410 ELNPERCQYYSVSFSKEAKYYQLRCSGPG  438 (740)
T ss_dssp             TTSTTTBCBEEEEECTTSSEEEEEECSBS
T ss_pred             ccCCCCCceEEEEECCCCCEEEEEeCCCC
Confidence            1   1233445789999999888776543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=1.1e-13  Score=144.11  Aligned_cols=265  Identities=12%  Similarity=0.075  Sum_probs=169.7

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      -+.|.+|+++|+|+++++...++.+.++........    ...  .......+.+..++...               .+.
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~i~~~d~~~---------------g~~   81 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVY----QQR--GLGPIEEDTILVIDPNN---------------AEI   81 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCB----SCG--GGCSCCSCCEEEECTTT---------------CCE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceee----ccc--ccccccCCcEEEEECCC---------------CeE
Confidence            467999999999999999888854333222211000    000  00000112222222111               111


Q ss_pred             ceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-EeEEee----------CCCcEEEEEEeeCCCCEEEEE
Q 005956          302 LQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD----------HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       302 ~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-~~~~~~----------h~~~V~~l~f~p~d~~~l~sg  368 (667)
                      +..+. ++-.....+++++++ ++++...++.|++||..... .+..+.          +-.....++++|.++.++++.
T Consensus        82 ~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d  161 (329)
T 3fvz_A           82 LQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD  161 (329)
T ss_dssp             EEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred             EeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence            22222 344578899999999 77777888999999986552 455552          233689999998567777777


Q ss_pred             e-cCCeEEEEecCCCeEEE-ecc----------cCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956          369 S-IDGKVRIWGVCEKRVVD-WAD----------VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  435 (667)
Q Consensus       369 s-~Dg~v~iwdl~~~~~~~-~~~----------~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~  435 (667)
                      + .++.|++||. .++.+. +..          .-..+..++++|+ |+.+++...++.|++|+..+++.... +..   
T Consensus       162 ~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~-~~~---  236 (329)
T 3fvz_A          162 GYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE-IKH---  236 (329)
T ss_dssp             CSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECC---
T ss_pred             CCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE-Eec---
Confidence            6 6899999995 444443 321          1234889999998 77777777889999999985554322 211   


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEe-------CCCcEEEEECCcceeeEEe---CCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITS-------EDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s-------~dg~I~iwd~~~~~~~~~~---~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                       ......+..++|+| + ..+.+.+       .+..|++||..+.......   ..+...+..++++|+|.++++...++
T Consensus       237 -~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          237 -ASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             -TTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred             -cccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence             12346788999999 3 3333332       3458999997644332221   23566789999999998888888899


Q ss_pred             cEEEEEcCCC
Q 005956          506 RVYVWNYDEL  515 (667)
Q Consensus       506 ~I~iWd~~~~  515 (667)
                      .|++|++...
T Consensus       314 ~I~~~~~~~~  323 (329)
T 3fvz_A          314 TVWKFTLTEK  323 (329)
T ss_dssp             CEEEEEEEEC
T ss_pred             EEEEEeCCcc
Confidence            9999998653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=5e-13  Score=136.56  Aligned_cols=240  Identities=9%  Similarity=0.036  Sum_probs=169.7

Q ss_pred             eeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ..+..+.....+++|+|+|+ +++++..++.|.+|+..+.                                        
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------------------------------------   60 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------------------------------------   60 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------------------------------
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------------------------------
Confidence            34555667788999999998 7888888999999998752                                        


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sg  368 (667)
                             ...+..+...+.++++++++ ++++...++.|.+||..+++......     ....+..+++.| +++++++.
T Consensus        61 -------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd  132 (296)
T 3e5z_A           61 -------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSD  132 (296)
T ss_dssp             -------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred             -------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence                   23344566778999999999 55555556899999998887655442     123466899999 89888873


Q ss_pred             ----e-------------cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEec-CCcc-eeee
Q 005956          369 ----S-------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEK  429 (667)
Q Consensus       369 ----s-------------~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~-~~~~-~~~~  429 (667)
                          +             ..+.|..++.. ++..........+..++|+|+|+.+++.+.++.|.+|++. ++.. ....
T Consensus       133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~  211 (296)
T 3e5z_A          133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV  211 (296)
T ss_dssp             CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred             CccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence                2             13467777766 6665555666678999999999999777778999999997 3333 1111


Q ss_pred             EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEE-cCCCCEEEEEeCCCcE
Q 005956          430 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASF-TTTGKHIISIGDDCRV  507 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs~Dg~I  507 (667)
                      . +..    ....+.++++.++| +++++.  ++.|.+||... ....+..  +.. +.+++| +|+++.|++++.+ .+
T Consensus       212 ~-~~~----~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~-~l  279 (296)
T 3e5z_A          212 H-FTV----EPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDGDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVST-EF  279 (296)
T ss_dssp             E-ECC----SSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTSCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETT-EE
T ss_pred             E-eeC----CCCCCCeEEECCCC-CEEEEc--CCeEEEECCCCCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCC-eE
Confidence            1 111    23456789999997 544444  88999999763 3334443  344 889999 6899999998875 35


Q ss_pred             EEEEcCCCC
Q 005956          508 YVWNYDELC  516 (667)
Q Consensus       508 ~iWd~~~~~  516 (667)
                      .-++.++..
T Consensus       280 ~~~~~~~~~  288 (296)
T 3e5z_A          280 WSIETNVRG  288 (296)
T ss_dssp             EEEECSCCB
T ss_pred             EEEEccccc
Confidence            555555543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=1.5e-12  Score=135.18  Aligned_cols=242  Identities=10%  Similarity=0.068  Sum_probs=164.9

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ..+..|...+.+++|+|+|++++++..++.|.+||..++..                                       
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---------------------------------------   78 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---------------------------------------   78 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------------------
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---------------------------------------
Confidence            34556777789999999999888888999999999875321                                       


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCC----CcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEE
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D----g~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~s  367 (667)
                            ......+...+.+++|++++ ++++...+    +.|.+||..++.....+.   +...+.++++.| +++++++
T Consensus        79 ------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~  151 (333)
T 2dg1_A           79 ------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFT  151 (333)
T ss_dssp             ------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEE
T ss_pred             ------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEE
Confidence                  11112355679999999999 55555555    589999998877654432   445799999999 8887776


Q ss_pred             Eec------CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCcceeeeE--eeccccCc
Q 005956          368 GSI------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKV--DFHDRKKT  438 (667)
Q Consensus       368 gs~------Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~~~~--~~~~~~~~  438 (667)
                      ...      .+.|..+|..+++..........+..++|+|+|+.++++ +.++.|.+||+.........+  ........
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  231 (333)
T 2dg1_A          152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG  231 (333)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred             eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence            653      356777777766665544444568899999999866554 467899999996421111111  00000001


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCC----CCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLP----KSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                       ...+..+++.++| .++++...++.|.+||... ....+....    +...+.+++|+||++.|+.++.++
T Consensus       232 -~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          232 -HEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             -SSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             -CCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence             1357889999996 6777777789999999753 233333211    112578999999988887666553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.58  E-value=1.2e-12  Score=136.67  Aligned_cols=203  Identities=10%  Similarity=0.025  Sum_probs=135.2

Q ss_pred             cceEEEEecCCC-eEEEEeCC---C--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC------------
Q 005956          310 GDVLDLAWSNSN-YLLSCSMD---K--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------------  371 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~D---g--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D------------  371 (667)
                      ..+..++|+|+| .|+.++.+   +  .|.+|++.+++......+.. +..++|+| +++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence            457889999999 77766643   2  48888999888877776555 99999999 89988887643            


Q ss_pred             ---------------CeEEEEecCCCeE-EEecccCCceEEEEEeeCCCEEEEEecCC-------cEEEEEecCCcceee
Q 005956          372 ---------------GKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGNDLKLE  428 (667)
Q Consensus       372 ---------------g~v~iwdl~~~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg-------~i~l~d~~~~~~~~~  428 (667)
                                     ..|++||+.+++. ..+.. . .+..++|+||| .++++..++       ...+|.+.++..  .
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--E  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--E
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--E
Confidence                           5799999999887 44444 3 78899999999 777765542       455665553322  1


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC--------CcEEEEECCcceeeEEeCCCCCCeEE-EEEcCCCCEEE
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--------SKLRILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHII  499 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~-v~~spdg~~l~  499 (667)
                      .+...       ..+..+  +|+| ++|+.++.+        ..|++|| ......+ ...+...+.. +.|+ |+ +++
T Consensus       212 ~l~~~-------~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l-~~~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          212 KMFEK-------VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-GKEVMGI-LDEVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             EEEEE-------ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC-SSCEEES-STTCCSEEEEEEEET-TE-EEE
T ss_pred             EeccC-------cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC-CCceEec-cccCCcccCCccEEc-Cc-EEE
Confidence            11111       234444  8997 555555433        4788888 3222211 2224566775 8999 88 999


Q ss_pred             EEeCCCcEEEEEcCCCCccccccccCccceeEEcc
Q 005956          500 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS  534 (667)
Q Consensus       500 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~  534 (667)
                      +++.++.++|| +.++..............+.|+|
T Consensus       278 ~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred             EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence            99999999999 87544322222233444566777

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=5.1e-13  Score=154.14  Aligned_cols=242  Identities=12%  Similarity=0.118  Sum_probs=168.4

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCC-----cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg-----~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      +|...+..++|||||++||.+..++     .|++||+.++...                                     
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~-------------------------------------  164 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL-------------------------------------  164 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence            4666799999999999999876644     8999999874321                                     


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCc----------------EEEEecCCCeE--eEEee---CCCcE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT----------------VRMWQVGCNQC--LNVFD---HHNYV  352 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~----------------I~iWd~~~~~~--~~~~~---h~~~V  352 (667)
                              .... ....+..++|+||| .|+.++.++.                |++|++.+++.  ...+.   +...+
T Consensus       165 --------~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~  235 (710)
T 2xdw_A          165 --------PDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM  235 (710)
T ss_dssp             --------EEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             --------cccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence                    1111 11236789999999 8888887766                99999988763  23332   45568


Q ss_pred             EEEEEeeCCCCEEEEEec-----CCeEEEEecCC------C--eEEEecccCCceEEEEEeeCCCEEEEEecCC----cE
Q 005956          353 TCVQFNPIDDNYFISGSI-----DGKVRIWGVCE------K--RVVDWADVRDVISAICYIPDGKGFIVGSITG----TC  415 (667)
Q Consensus       353 ~~l~f~p~d~~~l~sgs~-----Dg~v~iwdl~~------~--~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg----~i  415 (667)
                      ..+.|+| ++++|+.++.     +..|++||+.+      +  ....+..+...+.. .|+|+|+.|++.+..+    .|
T Consensus       236 ~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l  313 (710)
T 2xdw_A          236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL  313 (710)
T ss_dssp             EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred             EEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence            8999999 9999888775     56899999986      4  34555555555544 5889999888876543    58


Q ss_pred             EEEEecCCcce-eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCcc--eeeEEeCCCCCCeEEEE
Q 005956          416 HFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDV--IHKFKGLPKSGSQMSAS  490 (667)
Q Consensus       416 ~l~d~~~~~~~-~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~--~~~~~~~~~~~~v~~v~  490 (667)
                      .+||+.+.... ...+..+.    ....+..+.|+++ ..++++...++  .|++||+.+.  ...+..  +...+..++
T Consensus       314 ~~~d~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~  386 (710)
T 2xdw_A          314 INIDFTDPEESKWKVLVPEH----EKDVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYS  386 (710)
T ss_dssp             EEEETTSCCGGGCEEEECCC----SSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEEEEECC--CSSEEEEEE
T ss_pred             EEEeCCCCCcccceeccCCC----CCCeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEEEecCC--CCceEEEEe
Confidence            99998765421 11121111    0135788999865 47888888887  4666786432  334433  467788899


Q ss_pred             EcCCCCEEEEEe----CCCcEEEEEcCCCC
Q 005956          491 FTTTGKHIISIG----DDCRVYVWNYDELC  516 (667)
Q Consensus       491 ~spdg~~l~sgs----~Dg~I~iWd~~~~~  516 (667)
                      ++|+++.|+...    ..+.|++||+.+++
T Consensus       387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            999998766432    34789999998876

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.55  E-value=1.7e-13  Score=145.39  Aligned_cols=252  Identities=12%  Similarity=0.081  Sum_probs=159.1

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956          227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  306 (667)
Q Consensus       227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (667)
                      .+.|+|||++|+.++.++.|.+|++.++....+...+.. .   ...++......                 ......+ 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~---~~~g~~l~~~~-----------------~~~~~~~-  142 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-W---KGYGTWVANSD-----------------CTKLVGI-  142 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-E---EEEEEEEECTT-----------------SSEEEEE-
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc-c---CCCCCEEEecc-----------------CCccccc-
Confidence            478999999999999999999999987654333221111 0   00000000000                 0000000 


Q ss_pred             ccccceEEEEecCCC-eEEEE-----eCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC------CeE
Q 005956          307 GHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------GKV  374 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~-----s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D------g~v  374 (667)
                          ....+.|+|++ .++..     ..+..|.+||+.+++......+...+..+.|+|.++..|+..+.+      ..|
T Consensus       143 ----~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l  218 (396)
T 3c5m_A          143 ----EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM  218 (396)
T ss_dssp             ----EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred             ----cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence                01124578888 44433     466789999999998877777888899999999446666665543      368


Q ss_pred             EEEecCCCeEEEeccc--CCceEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          375 RIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~--~~~v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      .+||+.+++...+..+  ...+..++|+|||+.|+.++.+     +.|.+||+.++..... ...        .... +.
T Consensus       219 ~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~--------~~~~-~~  288 (396)
T 3c5m_A          219 WLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVM--------PPCS-HL  288 (396)
T ss_dssp             EEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EEC--------CSEE-EE
T ss_pred             EEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeC--------CCCC-CC
Confidence            8999987766554443  2357889999999988877654     4499999987654321 111        1123 88


Q ss_pred             Ecc-CCCeEEEEEe----------------CCCcEEEEECCcc-eeeEEeCCCCC-----------CeEEEEEcCCCCEE
Q 005956          448 FSR-DESQRIMITS----------------EDSKLRILDGVDV-IHKFKGLPKSG-----------SQMSASFTTTGKHI  498 (667)
Q Consensus       448 ~sp-~g~~~l~~~s----------------~dg~I~iwd~~~~-~~~~~~~~~~~-----------~v~~v~~spdg~~l  498 (667)
                      |+| +| +++++++                .+..|++||+... ...+..  +..           .+..++|+|||++|
T Consensus       289 ~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l  365 (396)
T 3c5m_A          289 MSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGV  365 (396)
T ss_dssp             EECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred             ccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccC--CCCccccccccccCCCCCceEccCCCeE
Confidence            999 87 5666544                3478999997643 233333  222           25667899999998


Q ss_pred             EEEeC-CCc--EEEEEcCCCCc
Q 005956          499 ISIGD-DCR--VYVWNYDELCF  517 (667)
Q Consensus       499 ~sgs~-Dg~--I~iWd~~~~~~  517 (667)
                      +.++. ++.  |+++++.++..
T Consensus       366 ~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          366 LFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             EEEECTTSSCEEEEEECCTTCC
T ss_pred             EEEecCCCCceEEEEEEccccc
Confidence            87765 454  55555555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.55  E-value=1.3e-12  Score=137.91  Aligned_cols=235  Identities=9%  Similarity=0.008  Sum_probs=155.0

Q ss_pred             eeeeccccceEEEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEee-------CCCcEEEEEEeeCCCCE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNY  364 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~d~~~  364 (667)
                      ..+..+..+  .++|+|++ +|+++.          .+++|.+||+.+.+.+..+.       +......++|+| ++++
T Consensus        45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~  121 (361)
T 2oiz_A           45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKF  121 (361)
T ss_dssp             EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSE
T ss_pred             EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCE
Confidence            344444444  89999999 777665          36789999999998887775       234567899999 9999


Q ss_pred             EEEEec--CCeEEEEecCCCeEEEe-cccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956          365 FISGSI--DGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       365 l~sgs~--Dg~v~iwdl~~~~~~~~-~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~  440 (667)
                      |+++..  ++.|.+||+.+++++.. ...... ..+.+.|++ ..+++.+.||.+.+|++....................
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~  200 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD  200 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred             EEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence            998874  57899999999988765 554433 235567765 6778888999999999865222211111000001111


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce----eeEEeCC----CC----CCeEEEEEcCCCCEEEEEeC-----
Q 005956          441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLP----KS----GSQMSASFTTTGKHIISIGD-----  503 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~----~~----~~v~~v~~spdg~~l~sgs~-----  503 (667)
                      .+ ..+.+++++ ..++..+.++.|.++|+....    ..+....    ..    .....++|+|++++++++..     
T Consensus       201 ~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          201 DP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             SC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             Cc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence            12 123345665 455666788999999975221    1111100    00    11113689999998887653     


Q ss_pred             ------CCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956          504 ------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       504 ------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                            .+.|.+||+.+.+......... ...++|+|||+.|+++..
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS
T ss_pred             ccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC
Confidence                  3489999999987755544444 677899999998888763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=9.8e-13  Score=137.25  Aligned_cols=222  Identities=11%  Similarity=0.116  Sum_probs=147.1

Q ss_pred             ccEEEEEEcCCCCEEEEEECC---Cc--EEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          223 GCIWTLKFSPDGRYLASGGED---GV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~D---g~--I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      ..+..++|||||++||.++.+   +.  |.+|++.++.                                          
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~------------------------------------------   96 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS------------------------------------------   96 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE------------------------------------------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc------------------------------------------
Confidence            468889999999999988754   33  6666766421                                          


Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeC---------------------------CCcEEEEecCCCeEeEEeeCC
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---------------------------DKTVRMWQVGCNQCLNVFDHH  349 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~---------------------------Dg~I~iWd~~~~~~~~~~~h~  349 (667)
                          ...+..+.. +..++|+|++ .|+.++.                           ...|.+||+.+++.+..+...
T Consensus        97 ----~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~  171 (347)
T 2gop_A           97 ----SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP  171 (347)
T ss_dssp             ----EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred             ----eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence                112222233 8999999999 6776653                           257999999998873444333


Q ss_pred             CcEEEEEEeeCCCCEEEEEecCC-------eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC--------Cc
Q 005956          350 NYVTCVQFNPIDDNYFISGSIDG-------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT--------GT  414 (667)
Q Consensus       350 ~~V~~l~f~p~d~~~l~sgs~Dg-------~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d--------g~  414 (667)
                       .+..+.|+| ++ +++++..+.       ...||.+.+++...+..+ ..+..+  +|||+.|+.++.+        ..
T Consensus       172 -~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~  245 (347)
T 2gop_A          172 -RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK  245 (347)
T ss_dssp             -TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred             -CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence             788999999 88 777776542       334444336666555444 445444  9999999887754        35


Q ss_pred             EEEEEecCCcceeeeEeeccccCcCCCCeEE-EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956          415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       415 i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~-l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp  493 (667)
                      |.+||  ++....    +   ...+...+.. +.|+ ++  ++++++.++.++|| +.+... .....+...+.+++|+|
T Consensus       246 l~~~d--~~~~~~----l---~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          246 LYIYD--GKEVMG----I---LDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEEEC--SSCEEE----S---STTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS
T ss_pred             EEEEC--CCceEe----c---cccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC
Confidence            77777  332211    1   1112356776 8999 74  88888999999998 653221 12222467789999999


Q ss_pred             CCCEEEEEeCCCcE-EEEEcC
Q 005956          494 TGKHIISIGDDCRV-YVWNYD  513 (667)
Q Consensus       494 dg~~l~sgs~Dg~I-~iWd~~  513 (667)
                        .++++++.++.. .||.++
T Consensus       312 --~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          312 --IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             --SEEEEEECSSSCCEEEEES
T ss_pred             --cEEEEEcCCCChHHheEeC
Confidence              677777777654 777766

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.54  E-value=4.7e-13  Score=152.88  Aligned_cols=204  Identities=9%  Similarity=-0.004  Sum_probs=136.0

Q ss_pred             cccceEEEEecCCC-eEEEEeCC----------CcEEEEecCC------CeEeEEe-eCCCcEEEEEEeeCCCCEEEEEe
Q 005956          308 HKGDVLDLAWSNSN-YLLSCSMD----------KTVRMWQVGC------NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s~D----------g~I~iWd~~~------~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                      |...+.+++|+||| .|++++.|          ..|++||+.+      ++..... .+...+..++|+| |+++|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence            66788999999999 88888776          5899999998      6666555 5667888999999 999999887


Q ss_pred             cCC--------eEEEEecC-CC---eEEEecc-cCCceEEEEEeeCCCEEEEEecCC--cEEEEEecCCcceeeeEeecc
Q 005956          370 IDG--------KVRIWGVC-EK---RVVDWAD-VRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHD  434 (667)
Q Consensus       370 ~Dg--------~v~iwdl~-~~---~~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg--~i~l~d~~~~~~~~~~~~~~~  434 (667)
                      .++        .|++||+. ++   +...+.. +...+..++|+|||++++++..+|  .|.+||+.+++.... ...+.
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL-CRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES-SCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec-ccccc
Confidence            553        79999999 56   5555444 367899999999999777787888  455555544433211 11110


Q ss_pred             ccCc--CCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCcc-eeeEEeCCCCCCeEEE-EEcCCCCEEEEEeCCC--c
Q 005956          435 RKKT--SGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVDV-IHKFKGLPKSGSQMSA-SFTTTGKHIISIGDDC--R  506 (667)
Q Consensus       435 ~~~~--~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw--d~~~~-~~~~~~~~~~~~v~~v-~~spdg~~l~sgs~Dg--~  506 (667)
                      ....  -.-.+..++|+|++ .++++++. +.++||  |.... ...+.  .+...+..+ +++.+.-++++++.+.  .
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  361 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGELVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYE  361 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTEEEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred             cccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCcEEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCE
Confidence            0000  00014678899985 78888888 998998  55422 33332  245556666 4443333344445554  5


Q ss_pred             EEEEEcCCCCc
Q 005956          507 VYVWNYDELCF  517 (667)
Q Consensus       507 I~iWd~~~~~~  517 (667)
                      |++||+.+++.
T Consensus       362 i~~~d~~~g~~  372 (662)
T 3azo_A          362 VVELDTVTGRA  372 (662)
T ss_dssp             EEEEETTTCCE
T ss_pred             EEEEECCCCce
Confidence            66667767654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.53  E-value=1.7e-12  Score=130.27  Aligned_cols=239  Identities=11%  Similarity=0.027  Sum_probs=167.1

Q ss_pred             cEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          224 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       224 ~I~~v~fspdg~~La-tgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ...+|+++++|++++ +.+.++.|.+|+..+....                                             
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------------------------   59 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------------------------   59 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------------------------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------------------------
Confidence            678999999999777 5467889999986542110                                             


Q ss_pred             eeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956          303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~  381 (667)
                      .....+...+.++++.+++.|+.+..++.|.+||..+....... .....+.++++.+ +++++++...++.|.+|+..+
T Consensus        60 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~  138 (270)
T 1rwi_B           60 VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS  138 (270)
T ss_dssp             ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC
T ss_pred             eEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC
Confidence            00012234577899999884444444889999998766543222 2336789999999 888887777788999998765


Q ss_pred             CeEEEe-cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          382 KRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       382 ~~~~~~-~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                      ...... ......+..++++++|+.+++...++.|.+||..+......       .......+.++++.++| .++++..
T Consensus       139 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~p~~i~~d~~g-~l~v~~~  210 (270)
T 1rwi_B          139 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL-------PFTDITAPWGIAVDEAG-TVYVTEH  210 (270)
T ss_dssp             CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC-------CCSSCCSEEEEEECTTC-CEEEEET
T ss_pred             ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee-------cccCCCCceEEEECCCC-CEEEEEC
Confidence            544332 22234678899999998777766788999999876543221       01112568899999996 6777777


Q ss_pred             CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          461 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       461 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      .++.|.+||............+...+.+++++++|+++++...++.|+++++...+
T Consensus       211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            78899999976443333222234578999999999988888889999999987654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=2.6e-13  Score=156.27  Aligned_cols=243  Identities=12%  Similarity=0.056  Sum_probs=165.4

Q ss_pred             cccccEEEEEEcCCCCEEE-----EEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          220 AHKGCIWTLKFSPDGRYLA-----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~La-----tgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      +|...+..++|||||++||     .|+++..|++||+.++....                                    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------  161 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------------------------------------  161 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------------------------------------
Confidence            5777899999999999999     45556789999998743210                                    


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCc-------------EEEEecCCCeE--eEEee---CCCcEEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-------------VRMWQVGCNQC--LNVFD---HHNYVTCV  355 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~-------------I~iWd~~~~~~--~~~~~---h~~~V~~l  355 (667)
                             ...+...  ....++|+||| .|+.++.|..             |++|++.++..  ...+.   +...+..+
T Consensus       162 -------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          162 -------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             -------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             -------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence                   0011111  12578999999 8888888776             99999998762  23332   44688999


Q ss_pred             EEeeCCCCEEEEEecCC----eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec----CCcEEEEEecCCcce-
Q 005956          356 QFNPIDDNYFISGSIDG----KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLK-  426 (667)
Q Consensus       356 ~f~p~d~~~l~sgs~Dg----~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~----dg~i~l~d~~~~~~~-  426 (667)
                      .|+| ++++|+.++.++    .|++|+..+++...+..+...+....+ ++|+ +++.+.    ++.|.+||+.+.... 
T Consensus       233 ~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          233 DLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             EECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred             EECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence            9999 899888877666    688888777766666666666666666 7777 655554    578999998765421 


Q ss_pred             eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--c-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-
Q 005956          427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHIISIG-  502 (667)
Q Consensus       427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-  502 (667)
                      ...+..+.    ....+..+.|+ + ..++++...|+..+||...  . ....+.. .....+..++++|+++.|+... 
T Consensus       310 ~~~l~~~~----~~~~l~~~~~~-~-~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~s  382 (695)
T 2bkl_A          310 WKEIVPED----SSASLLSVSIV-G-GHLSLEYLKDATSEVRVATLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFT  382 (695)
T ss_dssp             CEEEECCC----SSCEEEEEEEE-T-TEEEEEEEETTEEEEEEEETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEE
T ss_pred             CeEEecCC----CCCeEEEEEEE-C-CEEEEEEEECCEEEEEEEeCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEc
Confidence            11111111    12457888888 3 4788888999987777532  2 1222222 1255677788899998777332 


Q ss_pred             ---CCCcEEEEEcCCCCc
Q 005956          503 ---DDCRVYVWNYDELCF  517 (667)
Q Consensus       503 ---~Dg~I~iWd~~~~~~  517 (667)
                         ..+.|++||+.+++.
T Consensus       383 s~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          383 SFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ETTEEEEEEEEETTTCCE
T ss_pred             CCCCCCEEEEEECCCCcE
Confidence               347899999988764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=5.4e-11  Score=120.69  Aligned_cols=267  Identities=8%  Similarity=0.027  Sum_probs=182.4

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      +..+...+.+++++++|+++++...++.|.+||.. +....                                       
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~---------------------------------------   49 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE---------------------------------------   49 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE---------------------------------------
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE---------------------------------------
Confidence            34566789999999999988776668889999876 22110                                       


Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK  373 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~Dg~  373 (667)
                           ..+..+...+.++++.+++ .+++...++.|..||.. ++. ..+.   ....+.++++.+ ++.++++...++.
T Consensus        50 -----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~  121 (299)
T 2z2n_A           50 -----YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNR  121 (299)
T ss_dssp             -----EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTE
T ss_pred             -----ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCce
Confidence                 0011234568899999988 55555557889999986 433 2232   455789999998 8888887777889


Q ss_pred             EEEEecCCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          374 VRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       374 v~iwdl~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      |..||. +++....  ......+..+++.++|+.+++...++.|..||. ++....  +...    .....+..+++.++
T Consensus       122 i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          122 IGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--FKIP----TPASGPVGITKGND  193 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECTT
T ss_pred             EEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--eeCC----CCCCcceeEEECCC
Confidence            999998 5555433  223456899999999987777767789999998 444322  1111    12356889999998


Q ss_pred             CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-c-cccCccce
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-K-QKNSVRSC  529 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~-~-~~~~~~~~  529 (667)
                      | .++++...++.|.+||.......+........+.+++++++|+..++...++.|.+||.. +..... . ........
T Consensus       194 g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~  271 (299)
T 2z2n_A          194 D-ALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHG  271 (299)
T ss_dssp             S-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEE
T ss_pred             C-CEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccce
Confidence            6 566666668899999984333334333345678999999999977766678899999984 332211 1 11223445


Q ss_pred             eEEccCCcEEEEec
Q 005956          530 EHFFSEGVSVAVQW  543 (667)
Q Consensus       530 ~~fs~dg~~lav~w  543 (667)
                      +.+ ++|.+.+...
T Consensus       272 i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          272 ICF-DGETIWFAME  284 (299)
T ss_dssp             EEE-CSSCEEEEET
T ss_pred             EEe-cCCCEEEEec
Confidence            566 7777666654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.51  E-value=4.5e-12  Score=131.84  Aligned_cols=233  Identities=10%  Similarity=0.064  Sum_probs=164.0

Q ss_pred             ccceEEEEecCCC-eEEEEeCC------------------------CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCC
Q 005956          309 KGDVLDLAWSNSN-YLLSCSMD------------------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID  361 (667)
Q Consensus       309 ~~~V~~l~~s~~~-~l~s~s~D------------------------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d  361 (667)
                      -+.+.+++++++| ++++...+                        ++|.+||..+++.+..+.  +-..+..++++| +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            3579999999999 66666656                        379999999999887775  345789999999 8


Q ss_pred             CCEEEEEecCCeEEEEecCCC--eEEEe---------cccCCceEEEEEee-CCCEEEEEe-cCCcEEEEEecCCcceee
Q 005956          362 DNYFISGSIDGKVRIWGVCEK--RVVDW---------ADVRDVISAICYIP-DGKGFIVGS-ITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~--~~~~~---------~~~~~~v~~v~~sp-dg~~l~~gs-~dg~i~l~d~~~~~~~~~  428 (667)
                      ++++++...++.|++||....  .+..+         ..+-..+..++++| +|+.+++.+ .++.|++|+.. +.... 
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~-  179 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVT-  179 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEE-
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEE-
Confidence            998888888999999998765  23333         22334689999999 788888876 68999999954 33322 


Q ss_pred             eEeecccc----CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEE-
Q 005956          429 KVDFHDRK----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI-  501 (667)
Q Consensus       429 ~~~~~~~~----~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-  501 (667)
                      .+...+..    .........++++|+++.++++...++.|++||..  +....+....+...+..++|+| +..+++. 
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence            22111110    11224478999999855778888889999999976  3444554444667788999999 4333333 


Q ss_pred             ------eCCCcEEEEEcCCCCccccc----cccCccceeEEccCCcEEEEecCC
Q 005956          502 ------GDDCRVYVWNYDELCFPSSK----QKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       502 ------s~Dg~I~iWd~~~~~~~~~~----~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                            ..+..|++|++.+++.....    ........++|+|+|.++++.+..
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence                  34458999999888765442    122334567899999766665543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.50  E-value=7.1e-12  Score=127.12  Aligned_cols=227  Identities=9%  Similarity=0.152  Sum_probs=157.4

Q ss_pred             ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-------CCCcEEEEEEeeCCCCEEEEEec-CCeEEEE
Q 005956          307 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSI-DGKVRIW  377 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iw  377 (667)
                      +|-..+.++++++++ ++++...++.|.+||.. ++.+..+.       +...+..+++.+.+++++++... ++.|++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            556778999999998 66677788999999987 66666653       23578999995326666666543 8899999


Q ss_pred             ecCCCeEEE-ec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          378 GVCEKRVVD-WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       378 dl~~~~~~~-~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      |. +++.+. +. .....+..++++|+|+.+++...++.|.+||......  ..+...    .+...+..++++++| .+
T Consensus       106 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~----~~~~~p~~i~~~~~g-~l  177 (286)
T 1q7f_A          106 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL--HKFGCS----KHLEFPNGVVVNDKQ-EI  177 (286)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE--EEEECT----TTCSSEEEEEECSSS-EE
T ss_pred             CC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE--EEeCCC----CccCCcEEEEECCCC-CE
Confidence            94 455443 32 2345689999999999777777789999999653221  122111    123568999999996 66


Q ss_pred             EEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCCccccc-ccc-CccceeE
Q 005956          456 IMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDELCFPSSK-QKN-SVRSCEH  531 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg-~I~iWd~~~~~~~~~~-~~~-~~~~~~~  531 (667)
                      +++...++.|++||... ....+....+...+..++++++|+++++...++ .|++|+.......... +.. .....++
T Consensus       178 ~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~  257 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVA  257 (286)
T ss_dssp             EEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEE
T ss_pred             EEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEE
Confidence            77777789999999753 233333322346789999999999888888776 9999996543322211 111 1234578


Q ss_pred             EccCCcEEEEe
Q 005956          532 FFSEGVSVAVQ  542 (667)
Q Consensus       532 fs~dg~~lav~  542 (667)
                      |.|+|.++++.
T Consensus       258 ~~~~g~l~vs~  268 (286)
T 1q7f_A          258 LMDDGSVVLAS  268 (286)
T ss_dssp             EETTTEEEEEE
T ss_pred             ECCCCcEEEEC
Confidence            99999876664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=4.7e-12  Score=131.73  Aligned_cols=238  Identities=6%  Similarity=-0.021  Sum_probs=164.4

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      .....|.+. ++++.++...++.|.+||..++..                                             +
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------------------------------------~   77 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------------------------------------V   77 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---------------------------------------------E
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---------------------------------------------E
Confidence            345677775 455566666689999999986432                                             3


Q ss_pred             eeeeccccceEEEEecCCCeEEEEe-CCCcEEEEecCCCeEeEEeeCCC------cEEEEEEeeCCCCEEEEEe-cCCeE
Q 005956          303 QELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS-IDGKV  374 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~~l~s~s-~Dg~I~iWd~~~~~~~~~~~h~~------~V~~l~f~p~d~~~l~sgs-~Dg~v  374 (667)
                      .++. .......+++++++.++.+. .++.|.+||..+++....+....      ....+++ . ++.++++.. .++.|
T Consensus        78 ~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A           78 GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI  154 (328)
T ss_dssp             EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred             EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence            3332 23567889998888555554 89999999999999888776444      5667777 4 555555443 48899


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC----------CcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d----------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      .++|+.++++.........+..++++|+|++++++..+          +.|.++|..+.+... .+....     .....
T Consensus       155 ~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~-~~~~~~-----g~~p~  228 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK-QFKFKL-----GDWPS  228 (328)
T ss_dssp             EEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE-EEECCT-----TCCCE
T ss_pred             EEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE-EEecCC-----CCCce
Confidence            99999999887655555667889999999876665554          789999998776432 222221     24678


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcceee-EE-eCCCCCCeEEEEEcCC-CCEEEEE----eCCCcEEEEEcCCCCc
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FK-GLPKSGSQMSASFTTT-GKHIISI----GDDCRVYVWNYDELCF  517 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~-~~-~~~~~~~v~~v~~spd-g~~l~sg----s~Dg~I~iWd~~~~~~  517 (667)
                      .++|+|++ .+|+++..  .|.+||....... .. ..........++++|+ +...++.    ..++.|.+||.+ ++.
T Consensus       229 ~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          229 EVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             EEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             eEEEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence            99999986 56666554  8999997643221 11 1112456889999995 5555555    568899999998 654


Q ss_pred             cc
Q 005956          518 PS  519 (667)
Q Consensus       518 ~~  519 (667)
                      ..
T Consensus       305 ~~  306 (328)
T 3dsm_A          305 ID  306 (328)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.46  E-value=3.8e-11  Score=123.09  Aligned_cols=247  Identities=13%  Similarity=0.135  Sum_probs=167.2

Q ss_pred             cccccEEEEEEcCCCCEEEE-------EECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          220 AHKGCIWTLKFSPDGRYLAS-------GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Lat-------gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ..-....+++|+++|+++++       +..++.|.+|+..++......                                
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--------------------------------   62 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC--------------------------------   62 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE--------------------------------
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE--------------------------------
Confidence            33445689999999998888       677889999987653321100                                


Q ss_pred             CcccccCCcceeeeccccceEEEEecCC-CeEEEEeCCCcEEEEecCCCeEeEE-ee-----CCCcEEEEEEeeCCCCEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV-FD-----HHNYVTCVQFNPIDDNYF  365 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~-~~l~s~s~Dg~I~iWd~~~~~~~~~-~~-----h~~~V~~l~f~p~d~~~l  365 (667)
                               .....++...+.+++++++ +.|+.++....|.+||.. ++.... ..     ....+.++++.+ +++++
T Consensus        63 ---------~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~  131 (314)
T 1pjx_A           63 ---------KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLW  131 (314)
T ss_dssp             ---------CCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEE
T ss_pred             ---------ecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEE
Confidence                     0001134567889999999 766666655589999998 766544 32     123588999999 88887


Q ss_pred             EEEecC---------------CeEEEEecCCCeEEEecccCCceEEEEEe----eCCCEEEEE-ecCCcEEEEEec-CCc
Q 005956          366 ISGSID---------------GKVRIWGVCEKRVVDWADVRDVISAICYI----PDGKGFIVG-SITGTCHFYKAS-GND  424 (667)
Q Consensus       366 ~sgs~D---------------g~v~iwdl~~~~~~~~~~~~~~v~~v~~s----pdg~~l~~g-s~dg~i~l~d~~-~~~  424 (667)
                      ++...+               +.|..||.. ++.............++++    |+|+.++++ ..++.|.+||.. .+.
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~  210 (314)
T 1pjx_A          132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK  210 (314)
T ss_dssp             EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE
T ss_pred             EEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc
Confidence            776655               568888876 5555444444567889999    999766655 467899999986 333


Q ss_pred             ceeeeEeeccccCcCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          425 LKLEKVDFHDRKKTSG-NKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       425 ~~~~~~~~~~~~~~~~-~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      .........  ...+. ..+..+++.++| .++++...++.|.+||..  .....+..  +...+.+++|+++|++|+.+
T Consensus       211 ~~~~~~~~~--~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~  285 (314)
T 1pjx_A          211 IENKKVWGH--IPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EEEEEEEEE--CCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEE
T ss_pred             cccceEEEE--CCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEE
Confidence            221111110  11112 457889999986 677777788899999976  23333433  45678999999999966554


Q ss_pred             -eCCCcEEEEEcCCC
Q 005956          502 -GDDCRVYVWNYDEL  515 (667)
Q Consensus       502 -s~Dg~I~iWd~~~~  515 (667)
                       ..++.|..|++...
T Consensus       286 ~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          286 EHENNAVWKFEWQRN  300 (314)
T ss_dssp             ETTTTEEEEEECSSC
T ss_pred             eCCCCeEEEEeCCCC
Confidence             45678999998753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.45  E-value=1.1e-10  Score=130.09  Aligned_cols=259  Identities=13%  Similarity=0.026  Sum_probs=175.6

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccc
Q 005956          232 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD  311 (667)
Q Consensus       232 pdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~  311 (667)
                      |.+.++++...++.|.++|..++..                                             +.++.. ...
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------------------------------~~~i~~-g~~  198 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEI---------------------------------------------KTVLDT-GYA  198 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCE---------------------------------------------EEEEEC-SSC
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeE---------------------------------------------EEEEeC-CCC
Confidence            5556778888899999999987322                                             333332 234


Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecC--CCeEeEEeeCCCcEEEEEEe----eCCCCEEEEEec-CCeEEEEecCCCe
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFN----PIDDNYFISGSI-DGKVRIWGVCEKR  383 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~--~~~~~~~~~h~~~V~~l~f~----p~d~~~l~sgs~-Dg~v~iwdl~~~~  383 (667)
                      +..+.|+|++ ++++++.|+.|.+||+.  +++.+..+........++|+    | +++++++++. +++|.++|..+.+
T Consensus       199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCC
T ss_pred             ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCc
Confidence            6689999999 88889999999999996  88888888766678899999    6 8888777664 5899999999988


Q ss_pred             EEEeccc------------CCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          384 VVDWADV------------RDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       384 ~~~~~~~------------~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      ++.....            ...+..+..++++..+++. ..+|.|.++|......... ..+.     .......+.|+|
T Consensus       278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-~~i~-----~~~~~~d~~~~p  351 (567)
T 1qks_A          278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TEIS-----AERFLHDGGLDG  351 (567)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EEEE-----CCSSEEEEEECT
T ss_pred             EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee-eeee-----ccccccCceECC
Confidence            7653321            1257788888887665554 4568999999876542211 1111     124567889999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcceee--EEe---CCCCCCeEEEEEcCCCCEEE-EEe-CCCcEEEEEcCCCC-------
Q 005956          451 DESQRIMITSEDSKLRILDGVDVIHK--FKG---LPKSGSQMSASFTTTGKHII-SIG-DDCRVYVWNYDELC-------  516 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~---~~~~~~v~~v~~spdg~~l~-sgs-~Dg~I~iWd~~~~~-------  516 (667)
                      +|..++++...++.|.++|+.+....  ...   ..|.+....+ ++|++..+. ++. .++.|.++|..+..       
T Consensus       352 dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k  430 (567)
T 1qks_A          352 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK  430 (567)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence            98555555667889999998854332  221   1232222222 588855554 443 46899999998732       


Q ss_pred             ccccccccCcc-ceeEEccCCcEEEEecC
Q 005956          517 FPSSKQKNSVR-SCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       517 ~~~~~~~~~~~-~~~~fs~dg~~lav~w~  544 (667)
                      ........... -.+.++|++..+-+...
T Consensus       431 vv~~i~~~g~g~~~i~~~p~~~~l~v~~~  459 (567)
T 1qks_A          431 ILDSFPALGGGSLFIKTHPNSQYLYVDAT  459 (567)
T ss_dssp             EEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred             EEEEEecCCCCCEEEEeCCCCCeEEEecC
Confidence            21111111122 34678999999999774

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.44  E-value=1.6e-11  Score=141.59  Aligned_cols=229  Identities=9%  Similarity=0.020  Sum_probs=152.8

Q ss_pred             ccccceEEEEecCCC-eEEEEeCCC-----cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe-------
Q 005956          307 GHKGDVLDLAWSNSN-YLLSCSMDK-----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-------  373 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~s~Dg-----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~-------  373 (667)
                      +|...+..++||||| +|+.+..++     +|++||+.+++.+........+..++|+| |++.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence            455578899999999 676554433     89999999998876443223367899999 9999999888766       


Q ss_pred             ---------EEEEecCCCe----EEE-ecccCCceEEEEEeeCCCEEEEEec-----CCcEEEEEecC------Ccceee
Q 005956          374 ---------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASG------NDLKLE  428 (667)
Q Consensus       374 ---------v~iwdl~~~~----~~~-~~~~~~~v~~v~~spdg~~l~~gs~-----dg~i~l~d~~~------~~~~~~  428 (667)
                               |++|++.+++    ++. ...+...+..+.|+|||++|+.++.     +..|.+||+.+      +.....
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     9999998865    221 1223455789999999999998775     56899999976      322222


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      .+...      ...+.. .|+|+|..+++.+..+   +.|.+||+....    ..+..+.....+..++|++++.++++.
T Consensus       281 ~l~~~------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~  353 (710)
T 2xdw_A          281 KLIDN------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (710)
T ss_dssp             EEECS------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             EeeCC------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence            22211      123333 4788875555555443   369999987542    333332122367789998888888888


Q ss_pred             eCCCc--EEEEEcCCCCcccc-ccccCccceeEEccCCcEEEEec
Q 005956          502 GDDCR--VYVWNYDELCFPSS-KQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       502 s~Dg~--I~iWd~~~~~~~~~-~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      ..|+.  |++|++.++..... .........+.++|++..+++..
T Consensus       354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~  398 (710)
T 2xdw_A          354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQF  398 (710)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred             EECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEE
Confidence            88884  66677755543221 11133344567888887777653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.44  E-value=2.1e-11  Score=124.43  Aligned_cols=228  Identities=12%  Similarity=0.016  Sum_probs=157.7

Q ss_pred             CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      ..+..+..+.....+++|+|++  .++++..++.|..|+..++  ...+ .+...+.+++++| +++++++...++.|.+
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLER   94 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence            3455666677778899999988  4778888999999999987  4444 3667899999999 8888877767789999


Q ss_pred             EecCCCeEEEeccc-----CCceEEEEEeeCCCEEEE----Eec-------------CCcEEEEEecCCcceeeeEeecc
Q 005956          377 WGVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHD  434 (667)
Q Consensus       377 wdl~~~~~~~~~~~-----~~~v~~v~~spdg~~l~~----gs~-------------dg~i~l~d~~~~~~~~~~~~~~~  434 (667)
                      ||..+++...+...     ...+..++++|+|+.+++    |+.             .+.|..++.. +..  ..+.   
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~--~~~~---  168 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL--SAPI---  168 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE--EEEE---
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE--EEee---
Confidence            99988876543221     234678999999998887    331             2344444443 222  1111   


Q ss_pred             ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-c--c---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956          435 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-D--V---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  508 (667)
Q Consensus       435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~--~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~  508 (667)
                         ........++|+|+| +.+++.+.++.|++||+. +  .   ...+  ..+...+..++++++|+++++.  ++.|+
T Consensus       169 ---~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          169 ---RDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVH  240 (296)
T ss_dssp             ---CCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred             ---cCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence               112557899999997 555777788999999975 2  1   2233  2245566789999999877666  78899


Q ss_pred             EEEcCCCCccccccccCccceeEE-ccCCcEEEEecCC
Q 005956          509 VWNYDELCFPSSKQKNSVRSCEHF-FSEGVSVAVQWPG  545 (667)
Q Consensus       509 iWd~~~~~~~~~~~~~~~~~~~~f-s~dg~~lav~w~~  545 (667)
                      +|+.+............ ...+.| .+++..|.++...
T Consensus       241 ~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          241 VLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             EECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT
T ss_pred             EECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC
Confidence            99987432222222222 566788 5888888887653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.42  E-value=6.3e-10  Score=112.78  Aligned_cols=267  Identities=8%  Similarity=-0.013  Sum_probs=182.0

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .....+.+|++.++|++.++...++.|.+|+.. +....                                         
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-----------------------------------------   54 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-----------------------------------------   54 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------------------------------
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-----------------------------------------
Confidence            445678999999999988877778899999876 22210                                         


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-e-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                         ..+..+...+.++++.+++ .+++...++.|..||.. ++..... . ....+.++++.+ +++++++...++.|..
T Consensus        55 ---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~  129 (300)
T 2qc5_A           55 ---FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGK  129 (300)
T ss_dssp             ---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEE
T ss_pred             ---EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEE
Confidence               0111233568889999988 55555557889999988 5543222 1 346789999998 8888887776889999


Q ss_pred             EecCCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          377 WGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       377 wdl~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      ||.. ++....  ......+..+++.++|+.+++...++.|..||. ++....  +...    .....+..+++.++| .
T Consensus       130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~d~~g-~  200 (300)
T 2qc5_A          130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE--YPLP----TNAAAPVGITSGNDG-A  200 (300)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECTTS-S
T ss_pred             ECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE--eeCC----CCCCCcceEEECCCC-C
Confidence            9988 655433  223457899999999996666556788999988 343321  2211    123568899999986 6


Q ss_pred             EEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-cc-ccCccceeEE
Q 005956          455 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQ-KNSVRSCEHF  532 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~-~~~~~~~~~f  532 (667)
                      ++++....+.|.+||.......+........+.+++++++|++.++...++.|..|+.. +..... .. .......+.+
T Consensus       201 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~  279 (300)
T 2qc5_A          201 LWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITF  279 (300)
T ss_dssp             EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEE
T ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEe
Confidence            66666667789999975333344333345678899999999977776667899999984 332211 11 1223445677


Q ss_pred             ccCCcEEEEec
Q 005956          533 FSEGVSVAVQW  543 (667)
Q Consensus       533 s~dg~~lav~w  543 (667)
                      .++|.+.+..+
T Consensus       280 ~~~g~l~v~~~  290 (300)
T 2qc5_A          280 GKDGSVWFALK  290 (300)
T ss_dssp             CTTSCEEEECS
T ss_pred             CCCCCEEEEcc
Confidence            88887666554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.40  E-value=2.7e-11  Score=140.34  Aligned_cols=242  Identities=17%  Similarity=0.107  Sum_probs=158.8

Q ss_pred             cccccEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~D-----g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      +|...+..++|||||++||.+..+     ..|++||+.++...                                     
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-------------------------------------  202 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-------------------------------------  202 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-------------------------------------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence            455578999999999999987654     46999999874321                                     


Q ss_pred             ccccCCcceeeeccccceEEEEecCCCeEEEEeCCCc--------------EEEEecCCCeE--eEEee---CCCcEEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKT--------------VRMWQVGCNQC--LNVFD---HHNYVTCV  355 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~--------------I~iWd~~~~~~--~~~~~---h~~~V~~l  355 (667)
                              . ...+...+..++|+||..|+.++.|+.              |++|++.++..  ...+.   +...+..+
T Consensus       203 --------~-~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          203 --------A-DELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             --------E-EEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             --------C-ccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence                    1 111122245788999875666666544              89999987752  23333   23368999


Q ss_pred             EEeeCCCCEEEEEecCC-----eEEEEecCCC--e-EEEecccCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCC
Q 005956          356 QFNPIDDNYFISGSIDG-----KVRIWGVCEK--R-VVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGN  423 (667)
Q Consensus       356 ~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~--~-~~~~~~~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~  423 (667)
                      .|+| |+++|+..+.++     .|++||+.++  + ...+......+... ++|+|+.|++.+.+    +.|.+||+.+.
T Consensus       274 ~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            9999 999888877654     8999999877  5 55555555445444 35999999888764    45899998764


Q ss_pred             cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956          424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFTTTGKHIIS  500 (667)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw--d~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~s  500 (667)
                      ......+. ..    +...+..+.+..  ..++++...|+..+||  +... ....+.. .....+..++++|+++.|+.
T Consensus       352 ~~~~~~l~-~~----~~~~l~~~~~~~--~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~  423 (741)
T 1yr2_A          352 TPRFDTVV-PE----SKDNLESVGIAG--NRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYL  423 (741)
T ss_dssp             SCEEEEEE-CC----CSSEEEEEEEEB--TEEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEE
T ss_pred             ccccEEEe-cC----CCCeEEEEEEEC--CEEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEE
Confidence            20111111 11    123466777773  4788888888877666  4322 2222222 23567888999999886663


Q ss_pred             E----eCCCcEEEEEcCCCCc
Q 005956          501 I----GDDCRVYVWNYDELCF  517 (667)
Q Consensus       501 g----s~Dg~I~iWd~~~~~~  517 (667)
                      .    ...+.|++||+.+++.
T Consensus       424 ~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          424 SFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEETTEEEEEEEEETTTTEE
T ss_pred             EEcCCCCCCEEEEEECCCCcE
Confidence            3    2347899999988764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.40  E-value=1.2e-10  Score=129.82  Aligned_cols=218  Identities=12%  Similarity=0.067  Sum_probs=158.4

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC--CCeEEEecccCCceEEEEE
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRVVDWADVRDVISAICY  399 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~--~~~~~~~~~~~~~v~~v~~  399 (667)
                      .+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+.  +.+++...........++|
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~  247 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  247 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence            66777889999999999999999998777888999999 99999999999999999996  7776655555556789999


Q ss_pred             e----eCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccC-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          400 I----PDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKK-----TSGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       400 s----pdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~-----~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      +    |||++++++.. ++.+.++|..+.+... .+...+...     .....+..+..++++..+++.....|.|.++|
T Consensus       248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd  326 (567)
T 1qks_A          248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  326 (567)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             ccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence            9    69999888765 5899999988766543 233221100     01236888999998777788888889999999


Q ss_pred             CCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccccc----cCccceeE-EccCCcEEEE
Q 005956          470 GVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK----NSVRSCEH-FFSEGVSVAV  541 (667)
Q Consensus       470 ~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~----~~~~~~~~-fs~dg~~lav  541 (667)
                      ..... ..............+.|+|+|++++++. .++.|.++|..+++.......    ........ ++|++..+.+
T Consensus       327 ~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~  405 (567)
T 1qks_A          327 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA  405 (567)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred             cCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEE
Confidence            76431 1111112345567889999999987766 568999999999875433222    11112222 5787555543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.39  E-value=1.2e-10  Score=121.12  Aligned_cols=217  Identities=10%  Similarity=0.072  Sum_probs=151.0

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc
Q 005956          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV  390 (667)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~  390 (667)
                      ....+.+..+..+++...+++|.+||..+++.+..+........+++++ ++.++++...++.|.+||+.++++......
T Consensus        45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~  123 (328)
T 3dsm_A           45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIEC  123 (328)
T ss_dssp             CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence            4566777543366666678999999999999999887778899999998 775544444889999999999987754443


Q ss_pred             CC------ceEEEEEeeCCCEEEEEe--cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          391 RD------VISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       391 ~~------~v~~v~~spdg~~l~~gs--~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                      ..      .+..+++ . +..++++.  .++.|.++|+.+.+.... +..       ......+.++|+| ++++++..+
T Consensus       124 g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~-i~~-------g~~p~~i~~~~dG-~l~v~~~~~  192 (328)
T 3dsm_A          124 PDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDE-LTI-------GIQPTSLVMDKYN-KMWTITDGG  192 (328)
T ss_dssp             TTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEE-EEC-------SSCBCCCEECTTS-EEEEEBCCB
T ss_pred             CCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEE-EEc-------CCCccceEEcCCC-CEEEEECCC
Confidence            33      5667777 4 45555555  488999999988765432 222       1335678899986 555555544


Q ss_pred             ----------CcEEEEECCccee--eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cc-cCcc
Q 005956          463 ----------SKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QK-NSVR  527 (667)
Q Consensus       463 ----------g~I~iwd~~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~-~~~~  527 (667)
                                +.|.++|..+...  .+.. ........++|+|++++|+++..  .|++||..+++.....  .. ....
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p  269 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFTVEKQFKF-KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKY  269 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTEEEEEEEC-CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCE
T ss_pred             ccCCccccCCceEEEEECCCCeEEEEEec-CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCce
Confidence                      7899999875432  3322 12346899999999999998765  8999999887653211  11 2334


Q ss_pred             ceeEEcc-CCcEEEEe
Q 005956          528 SCEHFFS-EGVSVAVQ  542 (667)
Q Consensus       528 ~~~~fs~-dg~~lav~  542 (667)
                      ..++++| ++.+.++.
T Consensus       270 ~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          270 YGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEEECTTTCCEEEEE
T ss_pred             EEEEEcCCCCeEEEEc
Confidence            4578998 45555554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.38  E-value=8.8e-11  Score=118.90  Aligned_cols=210  Identities=11%  Similarity=-0.023  Sum_probs=152.7

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccc-cc
Q 005956          233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHK-GD  311 (667)
Q Consensus       233 dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~-~~  311 (667)
                      .+++|++++.|+.|.+||..+++                                             .+..+..+. ..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~---------------------------------------------~~w~~~~~~~~~   38 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKE---------------------------------------------IVWEYPLEKGWE   38 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTE---------------------------------------------EEEEEECCTTCC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCe---------------------------------------------EEEEeCCCccCC
Confidence            46799999999999999987632                                             344444444 46


Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeC--CCcEEEEEEeeCCCCEEEEEec-CCeEEEEecCCCeEE-E
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVV-D  386 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~~~~~-~  386 (667)
                      +.++.++|+| +|+  +.++.|..||. +++.+..+..  ...+.++.+.+ +++++++.+. ++.|..+|. +++.+ .
T Consensus        39 ~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~  113 (276)
T 3no2_A           39 CNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSK  113 (276)
T ss_dssp             CCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEE
T ss_pred             CcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEE
Confidence            8889999999 555  45788999999 7998888874  35788999999 9999999887 778888886 45443 2


Q ss_pred             ec------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          387 WA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       387 ~~------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                      +.      .+...+..+++.++|+++++...++.|..||.. ++.... +...       ..+.++...++| ..++++.
T Consensus       114 ~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~-~~~~-------~~~~~~~~~~~g-~~~v~~~  183 (276)
T 3no2_A          114 TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS-VKLS-------GTPFSSAFLDNG-DCLVACG  183 (276)
T ss_dssp             EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE-EECS-------SCCCEEEECTTS-CEEEECB
T ss_pred             EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE-EECC-------CCccceeEcCCC-CEEEEeC
Confidence            21      122235566788999999999999999999987 555332 2221       345567778886 7788888


Q ss_pred             CCCcEEEEECCcceeeEEeCCC------CCCeEEEEEcCCCCEEEEEe
Q 005956          461 EDSKLRILDGVDVIHKFKGLPK------SGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       461 ~dg~I~iwd~~~~~~~~~~~~~------~~~v~~v~~spdg~~l~sgs  502 (667)
                      .++.|..+|..+.....+...+      ...+..+...++|..+++..
T Consensus       184 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          184 DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8889999997744443333111      23367888889998888874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.38  E-value=5.7e-10  Score=113.09  Aligned_cols=237  Identities=8%  Similarity=0.024  Sum_probs=164.8

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      +...+.+|+++++|.++++...++.|..|+... ...                                           
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~-------------------------------------------   90 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK-------------------------------------------   90 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-------------------------------------------
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE-------------------------------------------
Confidence            446789999999999888877788898887652 110                                           


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-e-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                       ...+..+...+.++++.+++ .+++...++.|.+||. +++..... . ....+.++++.+ +++++++...++.|..|
T Consensus        91 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           91 -EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRI  167 (299)
T ss_dssp             -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred             -EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEE
Confidence             00011234468889999988 5555556789999998 55544332 2 445789999998 78887777677899999


Q ss_pred             ecCCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          378 GVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       378 dl~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      |. +++....  ......+..++++++|+.+++...++.|.+||. ++....  +...    .....+.++++.++| .+
T Consensus       168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~~~~g-~l  238 (299)
T 2z2n_A          168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--FKIP----TPNARPHAITAGAGI-DL  238 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred             cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--EECC----CCCCCceeEEECCCC-CE
Confidence            99 6665543  233456889999999987666666789999998 554321  2111    123678999999996 55


Q ss_pred             EEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          456 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      +++...++.|.+||.......+....+...+.++++ ++|.+.++.. .+.|..++.++.
T Consensus       239 ~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          239 WFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             EEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            555557789999998544444443334567899999 8888777665 567777777654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.38  E-value=4.9e-11  Score=120.80  Aligned_cols=219  Identities=13%  Similarity=0.095  Sum_probs=158.4

Q ss_pred             cCCCeEEEEeCCCcEEEEecCCCeEeEEeeCC--CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-eccc-CCc
Q 005956          318 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDV  393 (667)
Q Consensus       318 s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~-~~~  393 (667)
                      +|++.|++++.|+.|.+||.++++.+..+...  ..+.++.+.| ++++++  +.++.|..||. +++.+. +... ...
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            45568999999999999999999999998743  3789999999 899888  45788999999 676654 3332 246


Q ss_pred             eEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956          394 ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       394 v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                      +.++.+.|+|+.+++.+. ++.+..+|.. ++... .+.+......+......+.+.++| .++++...++.|.+||.. 
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~-~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNMK-GEVLS-KTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEE-EEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT-
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEE-EEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC-
Confidence            888999999999999887 7777777753 43322 233222111111234556788886 788899999999999986 


Q ss_pred             ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc-------CccceeEEccCCcEEEEecCC
Q 005956          473 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN-------SVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       473 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-------~~~~~~~fs~dg~~lav~w~~  545 (667)
                      .....+... ...+.++.+.++|++|++++.++.|..+|.++++..+.....       .........++|.+++..+.+
T Consensus       155 G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          155 GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred             CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence            433333321 234566788899999999988889999999988876554221       113445677899999998754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.38  E-value=3.2e-11  Score=138.68  Aligned_cols=225  Identities=11%  Similarity=0.002  Sum_probs=146.6

Q ss_pred             ccccceEEEEecCCC-eEE-----EEeCCCcEEEEecCCCeEe-EEeeCCCcEEEEEEeeCCCCEEEEEecCCe------
Q 005956          307 GHKGDVLDLAWSNSN-YLL-----SCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGK------  373 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~-----s~s~Dg~I~iWd~~~~~~~-~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~------  373 (667)
                      +|...+..++||||| +|+     .|+.+.+|++||+.+++.+ ...........++|+| |++.|+.++.|..      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence            566679999999999 666     2334568999999998865 2111111126789999 9999999988776      


Q ss_pred             -------EEEEecCCCe----EEE-ecccCCceEEEEEeeCCCEEEEEecCC----cEEEEEecCCcceeeeEeeccccC
Q 005956          374 -------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKK  437 (667)
Q Consensus       374 -------v~iwdl~~~~----~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg----~i~l~d~~~~~~~~~~~~~~~~~~  437 (667)
                             |++|++.+++    ++. ...+...+..+.|+|||++|++++.++    .|.+++..+...  ..+...    
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~----  270 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF--RLLVKG----  270 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--EEEEEC----
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--EEeecC----
Confidence                   9999998865    222 223445788999999999999887665    555555433322  222211    


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe---CCCcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956          438 TSGNKITGIQFSRDESQRIMITS---EDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  510 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s---~dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW  510 (667)
                        ...+....+ ++|. +++.+.   .++.|.+||+....    ..+........+..++|+ ++.++++...|+..+||
T Consensus       271 --~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          271 --VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             --SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             --CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence              134455556 6664 555554   25789999986532    333332224567888888 77788889999988888


Q ss_pred             EcC-CCCccc--cccccCccceeEEccCCcEEEEec
Q 005956          511 NYD-ELCFPS--SKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       511 d~~-~~~~~~--~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      .++ ++....  ..+.......+.++|++..+++..
T Consensus       346 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  381 (695)
T 2bkl_A          346 VATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF  381 (695)
T ss_dssp             EEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred             EEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence            665 232221  112233344567889988777654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.36  E-value=1.3e-09  Score=115.24  Aligned_cols=258  Identities=8%  Similarity=-0.021  Sum_probs=163.0

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (667)
                      .++..-..+  .++|||||++|+.+.          .++.|.+||..+..........                      
T Consensus        61 ~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~----------------------  116 (373)
T 2mad_H           61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP----------------------  116 (373)
T ss_pred             EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC----------------------
Confidence            344433344  899999999999886          3678999999764332110000                      


Q ss_pred             ceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEE-eeCCCcEEEEEEeeCC
Q 005956          286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPID  361 (667)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~d  361 (667)
                                   . .....  +......+.|+|+| +|+.+..  +++|.++| .+++.+.. +....   |+.+.|..
T Consensus       117 -------------~-~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~  176 (373)
T 2mad_H          117 -------------D-APRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGA  176 (373)
T ss_pred             -------------C-ccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCC
Confidence                         0 00000  01234578999999 7776663  57899999 99998887 65433   24556644


Q ss_pred             CCEEEEEecCCeEEEEecCCCeEEEecc------cCCc-eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeec
Q 005956          362 DNYFISGSIDGKVRIWGVCEKRVVDWAD------VRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFH  433 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~~~~~~~------~~~~-v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~  433 (667)
                      ...+++.+.||.+.++|. +++......      .... .....+.+++..++..+..+.+.+.|+.+...... .+.+.
T Consensus       177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~  255 (373)
T 2mad_H          177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL  255 (373)
T ss_pred             CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeec
Confidence            567777888999999999 777652211      1111 23356777777666666788999999976543221 22221


Q ss_pred             ccc----CcCCCCeEEEEEccCCCeEEEEEeC----------CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EE
Q 005956          434 DRK----KTSGNKITGIQFSRDESQRIMITSE----------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HI  498 (667)
Q Consensus       434 ~~~----~~~~~~I~~l~~sp~g~~~l~~~s~----------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l  498 (667)
                      ...    .........+.++|++. .++++..          .+.|.++|..+....-... .......++|+|||+ ++
T Consensus       256 ~~~~~~~~~~p~g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l  333 (373)
T 2mad_H          256 SGGRKADTWRPGGWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDL  333 (373)
T ss_pred             CCcccccceecCceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEE
Confidence            100    00112344578899874 4444432          3589999987544332221 334678999999999 77


Q ss_pred             EEEe-CCCcEEEEEcCCCCcccc
Q 005956          499 ISIG-DDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       499 ~sgs-~Dg~I~iWd~~~~~~~~~  520 (667)
                      +++. .++.|.+||..+++....
T Consensus       334 ~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          334 YALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEcCCCCeEEEEECCCCCEEee
Confidence            7777 589999999999876433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.35  E-value=1.6e-10  Score=115.79  Aligned_cols=224  Identities=7%  Similarity=-0.023  Sum_probs=152.0

Q ss_pred             ceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe
Q 005956          311 DVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  387 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~  387 (667)
                      ...++++++++ .++ +...++.|.+|+..+....... .+...+.++++.+ +++++++.. ++.|.+||..+......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            67889999998 444 4367889999998665433221 2335788999999 788666655 88999999887765543


Q ss_pred             cc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 005956          388 AD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  466 (667)
Q Consensus       388 ~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~  466 (667)
                      .. ....+..++++|+|+.+++...++.|.+|+..+......  .     ......+.++++.++| .++++...++.|.
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~-----~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~  174 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--P-----FTGLNDPDGVAVDNSG-NVYVTDTDNNRVV  174 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--C-----CCSCCSCCCEEECTTC-CEEEEEGGGTEEE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--c-----cccCCCceeEEEeCCC-CEEEEECCCCEEE
Confidence            32 235689999999998777777788999997554332211  0     1112457889999986 5666666788999


Q ss_pred             EEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc-cCccceeEEccCCcEEEEecC
Q 005956          467 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK-NSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       467 iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~~~~~fs~dg~~lav~w~  544 (667)
                      +||............+...+..++++++|.++++...++.|++|+..+......... ......+.+.++|.+++..+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence            999765433332222336788999999998777777788999999877543322211 133456788999986666554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.30  E-value=3.9e-10  Score=130.64  Aligned_cols=226  Identities=11%  Similarity=0.017  Sum_probs=141.0

Q ss_pred             ccccceEEEEecCCC-eEEEEeCC-----CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe-------
Q 005956          307 GHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-------  373 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~s~D-----g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~-------  373 (667)
                      +|...+..++||||| +|+.++.+     .+|++||+.+++.+....+...+..++|+| | +.|+.++.++.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCcccccccc
Confidence            344578899999999 66655443     469999999998866432222335789999 8 88888876654       


Q ss_pred             -------EEEEecCCCe----EEE-ecccCCceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcce-eeeEeeccc
Q 005956          374 -------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLK-LEKVDFHDR  435 (667)
Q Consensus       374 -------v~iwdl~~~~----~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~-~~~~~~~~~  435 (667)
                             |++|++.++.    ++. ...+...+..+.|+|||++|+..+.++     .|.+||+.+.... ...+...  
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--  315 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD--  315 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS--
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC--
Confidence                   8999997765    222 122233588999999999999887654     8999999876222 2222211  


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEeC---CCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITSE---DSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV  509 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s~---dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i  509 (667)
                          ...+.... +|+|..+++.+..   ++.|.+||+...   ...+. ..+...+..++++ ++.++++...|+..+|
T Consensus       316 ----~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          316 ----LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQV  388 (741)
T ss_dssp             ----SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred             ----CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence                12334443 4776444444432   346999998653   12222 2244456677887 6677888888988777


Q ss_pred             EEcC-CCCccccc--cccCccceeEEccCCcEEEEec
Q 005956          510 WNYD-ELCFPSSK--QKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       510 Wd~~-~~~~~~~~--~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      |.++ ++......  ........+.++||+..+++..
T Consensus       389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  425 (741)
T 1yr2_A          389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF  425 (741)
T ss_dssp             EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred             EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence            7554 23222111  1223345567888887666543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.29  E-value=4.6e-10  Score=117.88  Aligned_cols=277  Identities=12%  Similarity=0.076  Sum_probs=169.6

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEeccc
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK  281 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (667)
                      .....++..-..+  .++++|||++|+.+.          .++.|.+||..+.........+.+                
T Consensus        69 ~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g----------------  130 (386)
T 3sjl_D           69 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA----------------  130 (386)
T ss_dssp             TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC----------------
T ss_pred             CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc----------------
Confidence            3334455444445  499999999887775          367899999987543211000000                


Q ss_pred             CCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEEeeCCCcEEEEEEe
Q 005956          282 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFN  358 (667)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~  358 (667)
                                        +.    .........+.|+||| +|+.+..  +++|.++|+.+++.+..+.-...   ....
T Consensus       131 ------------------~r----~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~  185 (386)
T 3sjl_D          131 ------------------PR----FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF  185 (386)
T ss_dssp             ------------------CC----CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred             ------------------cc----cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee
Confidence                              00    0001234568999999 6666653  68999999999999998864442   2334


Q ss_pred             eCCCCEEEEEecCCeEEEEecCC-CeEEEec-cc----CCce-EEEEEe-eCCCEEEEEecCCcEEEEEecCCcceee-e
Q 005956          359 PIDDNYFISGSIDGKVRIWGVCE-KRVVDWA-DV----RDVI-SAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLE-K  429 (667)
Q Consensus       359 p~d~~~l~sgs~Dg~v~iwdl~~-~~~~~~~-~~----~~~v-~~v~~s-pdg~~l~~gs~dg~i~l~d~~~~~~~~~-~  429 (667)
                      |.....+++.+.||++.+.++.. +++.... ..    ...+ ....|. ++|++++ .+.+|.+.+.|+.+...... .
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~  264 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA  264 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence            54667888888999999999976 5543211 11    1112 224564 5775444 66689999999987654322 2


Q ss_pred             Eeeccc----cCcCCCCeEEEEEccCCCeEEEEEeC---------CCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCC
Q 005956          430 VDFHDR----KKTSGNKITGIQFSRDESQRIMITSE---------DSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTT  494 (667)
Q Consensus       430 ~~~~~~----~~~~~~~I~~l~~sp~g~~~l~~~s~---------dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spd  494 (667)
                      +.+...    ..-....+..+++++++...+++...         .++|.++|+.+.  +..+..   ...+.++++++|
T Consensus       265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D  341 (386)
T 3sjl_D          265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQD  341 (386)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSS
T ss_pred             eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCC
Confidence            321000    00011234457778886444444321         257999998753  333333   236779999999


Q ss_pred             CC-EEEEE-eCCCcEEEEEcCCCCccccccccCccceeEEccC
Q 005956          495 GK-HIISI-GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  535 (667)
Q Consensus       495 g~-~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~d  535 (667)
                      ++ +|+++ ..++.|.++|..+++.............+.+++|
T Consensus       342 ~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          342 EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             CCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            97 66665 4589999999999887655444444444455554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.29  E-value=1.5e-09  Score=111.08  Aligned_cols=229  Identities=10%  Similarity=0.051  Sum_probs=150.2

Q ss_pred             eeccccceEEEEecCCC-eEEE-------EeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCC-CCEEEEEec
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLS-------CSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPID-DNYFISGSI  370 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s-------~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d-~~~l~sgs~  370 (667)
                      +...-....+++|.+++ .+++       ...++.|.+||..+++......     +...+.++++.+ + +++++ ++.
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v-~~~   90 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFV-ADM   90 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEE-EET
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEE-EEC
Confidence            34444567899999988 4555       4678899999988887654332     446789999998 6 55444 444


Q ss_pred             CCeEEEEecCCCeEEEe-ccc-----CCceEEEEEeeCCCEEEEEecC---------------CcEEEEEecCCcceeee
Q 005956          371 DGKVRIWGVCEKRVVDW-ADV-----RDVISAICYIPDGKGFIVGSIT---------------GTCHFYKASGNDLKLEK  429 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~~-~~~-----~~~v~~v~~spdg~~l~~gs~d---------------g~i~l~d~~~~~~~~~~  429 (667)
                      ...|.+||.. ++.... ...     ...+..++++++|+.+++...+               +.|..|+.. +....  
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~--  166 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ--  166 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE--
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE--
Confidence            5579999998 776554 321     2358899999999877766554               456666654 22211  


Q ss_pred             EeeccccCcCCCCeEEEEEc----cCCCeEEEEEeCCCcEEEEECC-cce----eeEEeC-CCC-CCeEEEEEcCCCCEE
Q 005956          430 VDFHDRKKTSGNKITGIQFS----RDESQRIMITSEDSKLRILDGV-DVI----HKFKGL-PKS-GSQMSASFTTTGKHI  498 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~s----p~g~~~l~~~s~dg~I~iwd~~-~~~----~~~~~~-~~~-~~v~~v~~spdg~~l  498 (667)
                      +. ..     ......++|+    |++..++++...++.|.+||.. ...    ..+... .+. ..+..++++++|+++
T Consensus       167 ~~-~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~  240 (314)
T 1pjx_A          167 VD-TA-----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             EE-EE-----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             ec-cC-----CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence            11 11     1346789999    9863344444567899999854 211    122221 122 567889999999988


Q ss_pred             EEEeCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEecCC
Q 005956          499 ISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       499 ~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ++...++.|.+||.++++...... .......++|+++|..|.++...
T Consensus       241 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            888788999999998655432222 22345567889999866665443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.29  E-value=2.7e-10  Score=130.86  Aligned_cols=242  Identities=14%  Similarity=0.117  Sum_probs=156.7

Q ss_pred             ccccccEEEEEEcCCCCEEEEE-----ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          219 QAHKGCIWTLKFSPDGRYLASG-----GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latg-----s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      .+|...|..++|||||++||-+     +++..|+|||+.++....                                   
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-----------------------------------  169 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE-----------------------------------  169 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-----------------------------------
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-----------------------------------
Confidence            3577789999999999999843     334679999998743210                                   


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCc-------------EEEEecCCCeE--eEEee----CCCcEE
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-------------VRMWQVGCNQC--LNVFD----HHNYVT  353 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~-------------I~iWd~~~~~~--~~~~~----h~~~V~  353 (667)
                               ..+.  ......++|+ |+ .|+.++.+..             |++|++.++..  ...+.    +...+.
T Consensus       170 ---------~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~  237 (693)
T 3iuj_A          170 ---------TPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV  237 (693)
T ss_dssp             ---------EEEE--EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE
T ss_pred             ---------cccC--CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE
Confidence                     0111  1113567899 88 7877777743             99999987653  33443    234578


Q ss_pred             EEEEeeCCCCEEEEEec----CCeEEEEecCCC--eEEEecccCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCC
Q 005956          354 CVQFNPIDDNYFISGSI----DGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGN  423 (667)
Q Consensus       354 ~l~f~p~d~~~l~sgs~----Dg~v~iwdl~~~--~~~~~~~~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~  423 (667)
                      .+.|+| ++++|+....    ...|+++|+.++  +...+.......... ++++|..|+..+..    +.|..+|+.+.
T Consensus       238 ~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~  315 (693)
T 3iuj_A          238 GATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP  315 (693)
T ss_dssp             EEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             EEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            899999 8888765443    248999999876  455555555555554 67777777665542    57888888775


Q ss_pred             ccee-eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956          424 DLKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS  500 (667)
Q Consensus       424 ~~~~-~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s  500 (667)
                      .... ..+..+.      ..+.  .|++++..++++...++  .|++||+...............+..+.++++++.|+.
T Consensus       316 ~~~~~~~l~~~~------~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~  387 (693)
T 3iuj_A          316 GPAHWRDLIPER------QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF  387 (693)
T ss_dssp             CGGGCEEEECCC------SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEE
T ss_pred             CccccEEEecCC------CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEE
Confidence            4311 1222111      2233  78888755555555555  6888987643322222224456777888888887766


Q ss_pred             EeCC----CcEEEEEcCCCCc
Q 005956          501 IGDD----CRVYVWNYDELCF  517 (667)
Q Consensus       501 gs~D----g~I~iWd~~~~~~  517 (667)
                      ...+    +.|+.||+.+++.
T Consensus       388 ~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          388 GFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEECSSSCCEEEEECTTTCCE
T ss_pred             EecCCCCCCEEEEEECCCCeE
Confidence            6544    7899999987754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.28  E-value=2.3e-09  Score=109.45  Aligned_cols=228  Identities=14%  Similarity=0.025  Sum_probs=154.1

Q ss_pred             cccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956          308 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       308 h~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      +..-..+..|++++  .+++...++.|..||..+++. ..+.....+.++++.| +++++++ . +..|.+||..+++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence            33445678899854  566777789999999988765 4556678899999999 8885554 4 578999999988765


Q ss_pred             Eeccc-----CCceEEEEEeeCCCEEEEEecC---------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          386 DWADV-----RDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       386 ~~~~~-----~~~v~~v~~spdg~~l~~gs~d---------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      .+...     ...++.++++|+|+++++....         ....+|.+..........  ..     ......++|+|+
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~~-----~~~pngi~~spd  159 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--DQ-----VDISNGLDWSLD  159 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--EE-----ESBEEEEEECTT
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--ec-----cccccceEEcCC
Confidence            43322     2357889999999966544322         334566655322111111  11     134678999999


Q ss_pred             CCeEEEEEeCCCcEEEEECC--cce----eeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc-
Q 005956          452 ESQRIMITSEDSKLRILDGV--DVI----HKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK-  523 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~--~~~----~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-  523 (667)
                      +..++++.+.++.|.+||..  +..    ..+... .....+..++++++|++.++...++.|.+||.++++....... 
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            75555666778899999863  211    222221 1235678899999998888877788999999987765443332 


Q ss_pred             cCccceeEEc-cCCcEEEEecCCC
Q 005956          524 NSVRSCEHFF-SEGVSVAVQWPGI  546 (667)
Q Consensus       524 ~~~~~~~~fs-~dg~~lav~w~~~  546 (667)
                      .....+++|. ||+..|.++....
T Consensus       240 ~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          240 VDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             CCCceEEEEeCCCCCEEEEEcCCc
Confidence            2456678998 8888887765543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=1.3e-09  Score=116.80  Aligned_cols=239  Identities=12%  Similarity=0.089  Sum_probs=160.7

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ...+.|+|+++|+++++...++.|++||..++...                                             
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------------------------  165 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------------------------  165 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------------------------
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------------------------
Confidence            35789999999998888888899999998753221                                             


Q ss_pred             eeeeccccceEEEEecCCC-eEEEEeCCC--cEEEEecCCCeEeEEe----e-CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVF----D-HHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg--~I~iWd~~~~~~~~~~----~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                       .+........ ++|++++ .|+.+..++  .|.+|+...+.....+    . ....+.+++++| ++..|+.+..++.|
T Consensus       166 -~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I  242 (409)
T 3hrp_A          166 -TVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNF  242 (409)
T ss_dssp             -EEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEE
T ss_pred             -EeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcE
Confidence             1111122233 8899998 788887766  7888888766544444    2 446778999999 55566667778899


Q ss_pred             EEEecCCCeEEEe----c-ccCCce-E-EEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeecc-c--------cC
Q 005956          375 RIWGVCEKRVVDW----A-DVRDVI-S-AICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-R--------KK  437 (667)
Q Consensus       375 ~iwdl~~~~~~~~----~-~~~~~v-~-~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~-~--------~~  437 (667)
                      +.||..++....+    . ...... . .++|+|+ +..+++-..++.|+.|+.... .  ..+.-.. .        ..
T Consensus       243 ~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~--~~~~g~~~~~g~~dg~~~~  319 (409)
T 3hrp_A          243 GRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C--EWFCGSATQKTVQDGLREE  319 (409)
T ss_dssp             EEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E--EEEEECTTCCSCBCEEGGG
T ss_pred             EEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E--EEEEeCCCCCCcCCCcccc
Confidence            9999988764433    1 111111 3 9999995 555555566788999987654 1  1111110 0        00


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCc-ceeeEEeCC-------------CCCCeEEEEEcCCCCEEEEEe
Q 005956          438 TSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVD-VIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~-~~~~~~~~~-------------~~~~v~~v~~spdg~~l~sgs  502 (667)
                      ........++++|+| .++++-. .++.|+.||..+ .+..+.+..             .-.....++++++|.++++-.
T Consensus       320 ~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~  398 (409)
T 3hrp_A          320 ALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA  398 (409)
T ss_dssp             CBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred             cEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence            112457899999997 5666666 788999999543 334444421             124588999999988888878


Q ss_pred             CCCcEEEEEcC
Q 005956          503 DDCRVYVWNYD  513 (667)
Q Consensus       503 ~Dg~I~iWd~~  513 (667)
                      .++.|+.++++
T Consensus       399 ~n~~Ir~i~~e  409 (409)
T 3hrp_A          399 WGKAIRKYAVE  409 (409)
T ss_dssp             TTCEEEEEEEC
T ss_pred             CCCeEEEEEeC
Confidence            88889887753

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.27  E-value=8.9e-11  Score=123.71  Aligned_cols=186  Identities=4%  Similarity=-0.009  Sum_probs=131.5

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      .++.+++++.+.+|++|+.++ ++||++.+......   .       . .+                       ...+..
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~---~-------~-~~-----------------------~~~~~~   83 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT---S-------D-ST-----------------------PLTFKW   83 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH---S-------S-SC-----------------------CCCCSE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc---c-------c-cc-----------------------cccceE
Confidence            689999999999999999986 66799875220000   0       0 00                       001212


Q ss_pred             eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~  381 (667)
                      . ..+.. |+.|+|  ++ .|+++ .++.|++||+.+....... .|...+.++.+.+ .  .+++++.||.|.+||+.+
T Consensus        84 ~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~  155 (388)
T 1xip_A           84 E-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRT  155 (388)
T ss_dssp             E-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTT
T ss_pred             E-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccC
Confidence            2 23566 999999  66 77777 8899999999766543333 4777888888776 2  388889999999999998


Q ss_pred             CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce-eeeEeeccccC---cCCCCeEEEEEccCCCeEEE
Q 005956          382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKK---TSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       382 ~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~---~~~~~I~~l~~sp~g~~~l~  457 (667)
                      +....   +...|+|+||+|+|  +++|..||++++|+..+.... ...+.......   .+...|.+++|.+++ .+++
T Consensus       156 ~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv  229 (388)
T 1xip_A          156 KSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLA  229 (388)
T ss_dssp             CCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEE
T ss_pred             Ccccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEE
Confidence            87654   45689999999999  788999999999998876642 12221111111   245889999999985 5555


Q ss_pred             E
Q 005956          458 I  458 (667)
Q Consensus       458 ~  458 (667)
                      +
T Consensus       230 ~  230 (388)
T 1xip_A          230 V  230 (388)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.26  E-value=5.3e-09  Score=106.77  Aligned_cols=229  Identities=12%  Similarity=0.090  Sum_probs=151.0

Q ss_pred             cccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          220 AHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       220 ~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      .+..---+..|+|+ +.++++...++.|..||..+...                                          
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------------------------   47 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------------------------------   47 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------------------------------
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------------------------------
Confidence            34445567889995 55666767789999999875321                                          


Q ss_pred             CCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeC-----CCcEEEEEEeeCCCCEEEEEecC--
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSID--  371 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h-----~~~V~~l~f~p~d~~~l~sgs~D--  371 (667)
                          ..+ .+...+.++++++++.|+.+. +..|.+||..+++.......     ...+..+++.| +++++++....  
T Consensus        48 ----~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~  120 (297)
T 3g4e_A           48 ----QRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEET  120 (297)
T ss_dssp             ----EEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCS
T ss_pred             ----EEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCccc
Confidence                111 234568899999999555555 56899999998876544432     23588999999 88876654322  


Q ss_pred             ---------CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEE-EecCCcEEEEEec--CCcceeeeEeeccccCcC
Q 005956          372 ---------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKAS--GNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       372 ---------g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~--~~~~~~~~~~~~~~~~~~  439 (667)
                               +.|..++.. ++...........+.++|+||++.+++ .+.++.|.+|++.  ++.+........  ....
T Consensus       121 ~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~~~  197 (297)
T 3g4e_A          121 APAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--LEKE  197 (297)
T ss_dssp             BTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--CCGG
T ss_pred             ccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--CCCC
Confidence                     234444443 444444444456789999999987755 4567899999984  443321111111  1111


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEc-CCCCEEEEEeC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFT-TTGKHIISIGD  503 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~s-pdg~~l~sgs~  503 (667)
                      ......+++.++| ++.++...++.|.+||..+  ....+..  +...+++++|. |+++.|+.++.
T Consensus       198 ~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          198 EQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             GCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            2467889999997 6777777788999999763  3444443  45678999998 88887776654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.25  E-value=1e-08  Score=108.31  Aligned_cols=221  Identities=9%  Similarity=-0.055  Sum_probs=145.1

Q ss_pred             EEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEeeCC--------CcEEEEEEeeCCCCEEEEEec--CC
Q 005956          314 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG  372 (667)
Q Consensus       314 ~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~d~~~l~sgs~--Dg  372 (667)
                      .++++||+ +|+.+.          .+++|.+||..+.+.+..+...        .....++|+| ++++|+++..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence            89999999 666654          3678999999998887776432        3456899999 9999998874  47


Q ss_pred             eEEEEecCCCeEEEe-cccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC-eEEEEEc
Q 005956          373 KVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFS  449 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~-~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~-I~~l~~s  449 (667)
                      .|.++| .+++++.. ......   +.+.|++ +.+++.+.||.+.++|. +++.... ....... ....+ .....+.
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-~~~~~~~-~~~~p~~~~~~~~  221 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-GLVGAML-TAAQNLLTQPAQA  221 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-Eeccccc-cCCcceeecceeE
Confidence            899999 99988765 554433   4555665 45566778999999999 6654421 1100000 11122 2335667


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCcc----eeeEEeCC--------CCCCeEEEEEcCCCCEEEEEeC----------CCcE
Q 005956          450 RDESQRIMITSEDSKLRILDGVDV----IHKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRV  507 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~--------~~~~v~~v~~spdg~~l~sgs~----------Dg~I  507 (667)
                      +++..++++. ..+.+.+.|+...    ...+....        .......+.++|+++.|+++..          ++.|
T Consensus       222 ~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V  300 (373)
T 2mad_H          222 NKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV  300 (373)
T ss_pred             ecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence            7764444444 6789999997532    11221100        0122344788999998888653          3579


Q ss_pred             EEEEcCCCCccccccccCccceeEEccCCc-EEEEec
Q 005956          508 YVWNYDELCFPSSKQKNSVRSCEHFFSEGV-SVAVQW  543 (667)
Q Consensus       508 ~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~-~lav~w  543 (667)
                      .++|..+.+.............+.|+|||+ .+.++.
T Consensus       301 ~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          301 TSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             EEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence            999999987755544444566789999999 455543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.25  E-value=1.4e-09  Score=111.58  Aligned_cols=234  Identities=11%  Similarity=0.084  Sum_probs=156.4

Q ss_pred             eeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          217 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      .+..+........|+|+|+ +++++..++.|..|+... .                                        
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~----------------------------------------   77 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T----------------------------------------   77 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C----------------------------------------
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C----------------------------------------
Confidence            3444556677899999998 667777788999998742 1                                        


Q ss_pred             cccCCcceeeeccccceEEEEecCCCeEEEEe-CCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEE--
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFIS--  367 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s-~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~s--  367 (667)
                            ...+..+...+..++++++|.|+.+. .++.|.+|+.. ++......     ....+..+++.| +++++++  
T Consensus        78 ------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~  149 (305)
T 3dr2_A           78 ------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDP  149 (305)
T ss_dssp             ------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECC
T ss_pred             ------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCc
Confidence                  22333455668899999999555554 45789999986 55433322     123467899999 8888876  


Q ss_pred             --Eec-------------CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC------CcEEEEEecCCcce
Q 005956          368 --GSI-------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLK  426 (667)
Q Consensus       368 --gs~-------------Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d------g~i~l~d~~~~~~~  426 (667)
                        |..             .+.|..||..++++.... .....+.++|+||++.|+++...      +.|.+|++....+.
T Consensus       150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~  228 (305)
T 3dr2_A          150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH  228 (305)
T ss_dssp             SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEE
T ss_pred             CCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc
Confidence              332             256888888777765544 44567889999999988887665      68999999865421


Q ss_pred             eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                      ........    .......+++.++| + |.++..+ .|.+||... ....+..  .. .+.+++|+++++.|+.++.++
T Consensus       229 ~~~~~~~~----~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g~~~~~~~~--~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          229 DRRHFASV----PDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDGQLLGHIPT--PG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EEEEEECC----SSSCCCSEEECTTS-C-EEECCSS-EEEEECTTSCEEEEEEC--SS-CCCEEEECTTSCEEEEEETTE
T ss_pred             CCeEEEEC----CCCCCCeEEECCCC-C-EEEecCC-cEEEECCCCCEEEEEEC--CC-ceeEEEEeCCCCEEEEEcCCe
Confidence            11111111    12345678999997 4 4444444 499999753 3334443  22 578899999999998888654


Q ss_pred             cEEEEE
Q 005956          506 RVYVWN  511 (667)
Q Consensus       506 ~I~iWd  511 (667)
                       ++.++
T Consensus       299 -l~~~~  303 (305)
T 3dr2_A          299 -LWMLP  303 (305)
T ss_dssp             -EEEEE
T ss_pred             -EEEEE
Confidence             44443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=1.9e-09  Score=115.46  Aligned_cols=232  Identities=12%  Similarity=0.014  Sum_probs=158.4

Q ss_pred             cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC--eEEEEecCCCeEEE
Q 005956          310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD  386 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg--~v~iwdl~~~~~~~  386 (667)
                      .....|+|++++ ++++...++.|++||..++............. ++|+| +++.|+++..++  .|.+++...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            467899999999 55566667899999999888777665444444 99999 888888888766  79999987654322


Q ss_pred             ec----c-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          387 WA----D-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       387 ~~----~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                      ..    . ....+.+++++|++..|+++..++.|+.||..+...... .....+.  ....+...++|+|+++.++++-.
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~--~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS--LGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC--CCCSSCCEEEEETTTTEEEEEET
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC--CCCCccccEEEeCCCCEEEEEeC
Confidence            21    2 446678899999555666677788999999886653221 0001110  00111239999996557777777


Q ss_pred             CCCcEEEEECCcceeeEEeCC-------------CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccccc---
Q 005956          461 EDSKLRILDGVDVIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK---  523 (667)
Q Consensus       461 ~dg~I~iwd~~~~~~~~~~~~-------------~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~---  523 (667)
                      .++.|+.|+.......+.+..             .-.....++++++|+++++-. .++.|+.|++.++........   
T Consensus       287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~  366 (409)
T 3hrp_A          287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV  366 (409)
T ss_dssp             TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC
Confidence            888999999765455554432             024578999999999777777 789999999777654322111   


Q ss_pred             ------------cCccceeEEccCCcEEEEecCC
Q 005956          524 ------------NSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       524 ------------~~~~~~~~fs~dg~~lav~w~~  545 (667)
                                  -.....+++.++|.++++.|..
T Consensus       367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n  400 (409)
T 3hrp_A          367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG  400 (409)
T ss_dssp             BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred             CCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence                        1123457888888777766553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.23  E-value=7.6e-09  Score=104.73  Aligned_cols=235  Identities=7%  Similarity=0.072  Sum_probs=160.5

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      +...+.+|++.++|+++++...++.|.+||.. +....                                          
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~------------------------------------------   96 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE------------------------------------------   96 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE------------------------------------------
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE------------------------------------------
Confidence            34678999999999988877667888888765 22110                                          


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE-ee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                        ..+......+.++++.+++ ++++...++.|..||.. ++.... +. ....+.++++.+ +++++++...++.|..|
T Consensus        97 --~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           97 --YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI  172 (300)
T ss_dssp             --EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred             --ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence              0111123467889999888 55555557899999988 655432 22 346789999999 88877766667899999


Q ss_pred             ecCCCeEEEec--ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          378 GVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       378 dl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      |. +++...+.  .....+..++++++|+.+++....+.|.+|+. ++....  ....    .....+.++++.++| .+
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~d~~g-~l  243 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--YDIP----TPNARPHAITAGKNS-EI  243 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--EECC----CCCCCceEEEECCCC-CE
Confidence            98 55554432  23456889999999977666666778999998 333221  1111    123568899999996 55


Q ss_pred             EEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          456 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      +++...++.|..||.......+........+.+++++++|++.++.. . .|..++.+
T Consensus       244 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          244 WFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             EEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            55555678999999854444444433456688899999998666554 4 67777653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.22  E-value=1.7e-09  Score=115.51  Aligned_cols=262  Identities=9%  Similarity=0.052  Sum_probs=165.8

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK  282 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (667)
                      ....++..-..+  .++++|||++|+.+.          .++.|.++|..+.........+.                  
T Consensus       110 ~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g------------------  169 (426)
T 3c75_H          110 RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD------------------  169 (426)
T ss_dssp             EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT------------------
T ss_pred             EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC------------------
Confidence            333444433445  799999999888775          46789999998754321100000                  


Q ss_pred             CCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEEeeCCCcEEEEEEee
Q 005956          283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP  359 (667)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p  359 (667)
                                      .+   .+ ........+.|+||+ +|+.+..  +++|.+.|+.+++.+..+.-...   ....|
T Consensus       170 ----------------~~---r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p  226 (426)
T 3c75_H          170 ----------------AP---RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFP  226 (426)
T ss_dssp             ----------------CC---CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEE
T ss_pred             ----------------cc---cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeecc
Confidence                            00   00 001224567899999 7777654  57899999999999988874432   33445


Q ss_pred             CCCCEEEEEecCCeEEEEecCCCeEEEe----ccc-CCc-eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEee
Q 005956          360 IDDNYFISGSIDGKVRIWGVCEKRVVDW----ADV-RDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDF  432 (667)
Q Consensus       360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~~----~~~-~~~-v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~  432 (667)
                      .....+++.+.||++.+.++.++++...    ... ... ...+.|.+++..++..+..|.+.+.|+.+...... .+.+
T Consensus       227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          227 ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred             CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence            3446777788899988888866665421    111 111 22356789999888888899999999976543322 2221


Q ss_pred             ccccC-c---CCCCeEEEEEccCCCeEEEEEe---------CCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCC-
Q 005956          433 HDRKK-T---SGNKITGIQFSRDESQRIMITS---------EDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGK-  496 (667)
Q Consensus       433 ~~~~~-~---~~~~I~~l~~sp~g~~~l~~~s---------~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~-  496 (667)
                      ..... .   .......+.++|++...+++..         ..+.|.++|..+.  +..+..   ......+.|+|||+ 
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~  383 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEP  383 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSC
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCE
Confidence            10000 0   0112223689999754444433         1357999998754  344433   23578999999999 


Q ss_pred             EEEEEe-CCCcEEEEEcCCCCcccc
Q 005956          497 HIISIG-DDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       497 ~l~sgs-~Dg~I~iWd~~~~~~~~~  520 (667)
                      +++++. .++.|.|+|..+.+....
T Consensus       384 ~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          384 LLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEEcCCCCeEEEEECCCCCEEEE
Confidence            888888 589999999999876544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.21  E-value=9.8e-09  Score=106.39  Aligned_cols=223  Identities=11%  Similarity=0.005  Sum_probs=147.1

Q ss_pred             cEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          224 CIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       224 ~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      -..+..|+|++ .++++...++.|.+|+..++..                                              
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------------------------   83 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK----------------------------------------------   83 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------------------------
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------------------------
Confidence            34678899974 4666666788999999875321                                              


Q ss_pred             eeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeC-----CCcEEEEEEeeCCCCEEEEEec------C
Q 005956          303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSI------D  371 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h-----~~~V~~l~f~p~d~~~l~sgs~------D  371 (667)
                      ..+. +...+.+++|++++.++.++.+ .|.+||..+++.......     ...+..++++| +++++++...      .
T Consensus        84 ~~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~  160 (326)
T 2ghs_A           84 TVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGA  160 (326)
T ss_dssp             EEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTC
T ss_pred             EEEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCc
Confidence            1111 2346889999999955545554 499999988876544332     23688999999 8887665542      2


Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEec--CC-cceee-eE-eeccccCcCCCCeEE
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKAS--GN-DLKLE-KV-DFHDRKKTSGNKITG  445 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~--~~-~~~~~-~~-~~~~~~~~~~~~I~~  445 (667)
                      +.|..++  +++.............++|+|+|+.++++ +.++.|.+||+.  ++ ..... .+ .+.    ........
T Consensus       161 ~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~----~~~~~p~g  234 (326)
T 2ghs_A          161 GSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST----GIKGGMDG  234 (326)
T ss_dssp             EEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT----TSSSEEEE
T ss_pred             eEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC----CCCCCCCe
Confidence            4566666  56655444444567899999999877665 456899999986  44 32211 11 111    11245678


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEc-CCCCEEEEEeCC
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFT-TTGKHIISIGDD  504 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~s-pdg~~l~sgs~D  504 (667)
                      +++.++| .++++...++.|.+||... ....+..  +...+.+++|+ ++++.|+.++..
T Consensus       235 i~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          235 SVCDAEG-HIWNARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEECTTS-CEEEEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             eEECCCC-CEEEEEeCCCEEEEECCCCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEecC
Confidence            9999986 6666666678999999742 2333433  45578999998 888877665543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.20  E-value=3.1e-08  Score=102.59  Aligned_cols=223  Identities=11%  Similarity=0.035  Sum_probs=145.5

Q ss_pred             ceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec
Q 005956          311 DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  388 (667)
Q Consensus       311 ~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~  388 (667)
                      -.....|++++  .+++...++.|..||..+++.. .+.....+.+++|.| +++++++. . ..|.+||..+++...+.
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence            35678899974  5667777899999999887653 345567899999999 88776654 3 45999999888765443


Q ss_pred             cc-----CCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          389 DV-----RDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       389 ~~-----~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                      ..     ...++.++++|+|+.+++...+    +...||.+.+++..  .+. ..     ......++|+|+|..++++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~--~~~-~~-----~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT--KLF-AD-----ISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE--EEE-EE-----ESSEEEEEECTTSCEEEEEE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE--Eee-CC-----CcccCCeEEcCCCCEEEEEE
Confidence            22     2358899999999866544321    22344444333322  111 11     13467899999974455555


Q ss_pred             eCCCcEEEEECC--cc-e----eeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCcccee
Q 005956          460 SEDSKLRILDGV--DV-I----HKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCE  530 (667)
Q Consensus       460 s~dg~I~iwd~~--~~-~----~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~  530 (667)
                      +.++.|.+||..  +. .    ..+... .....+..++++++|.+.++...++.|.+|+.. ++..... .......++
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~  276 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCP  276 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEE
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEE
Confidence            667899999964  22 1    222221 123456789999999988877677889999984 4332222 222345677


Q ss_pred             EEc-cCCcEEEEecCCC
Q 005956          531 HFF-SEGVSVAVQWPGI  546 (667)
Q Consensus       531 ~fs-~dg~~lav~w~~~  546 (667)
                      +|. +++..|.++....
T Consensus       277 af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          277 AFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEESTTSCEEEEEEBCT
T ss_pred             EEecCCCCEEEEEecCC
Confidence            898 8888776654443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.19  E-value=1.1e-09  Score=114.31  Aligned_cols=261  Identities=13%  Similarity=0.072  Sum_probs=164.5

Q ss_pred             ccEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          223 GCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs--~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      .....|+++|+|+++++..  .++.++||.+.++..  ..|.                             ..      .
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~--~~~p-----------------------------~~------~   59 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL--IPFP-----------------------------PQ------S   59 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE--EESC-----------------------------CC------C
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe--ecCC-----------------------------Cc------c
Confidence            6789999999999988864  234467776643211  0110                             00      0


Q ss_pred             cceeeeccccceEEEEecCCCeEEEEeC------CCcEEEEecCCCeEeEEeeC-------CCcEEEEEEeeCCCCEEEE
Q 005956          301 PLQELHGHKGDVLDLAWSNSNYLLSCSM------DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~------Dg~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~d~~~l~s  367 (667)
                        ....+|...+..+++.+++.|+.+..      ++.|.+||+.+++.+..+..       ...+..+++.+.++..+++
T Consensus        60 --~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt  137 (343)
T 2qe8_A           60 --GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS  137 (343)
T ss_dssp             --SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred             --cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence              01124667899999999995554432      57899999999997777642       2356899999833444455


Q ss_pred             Ee---cCCeEEEEecCCCeEEEeccc-CCc-eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          368 GS---IDGKVRIWGVCEKRVVDWADV-RDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       368 gs---~Dg~v~iwdl~~~~~~~~~~~-~~~-v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      ..   .++.|.+||+.+++....... ... .....+.++|..+.+...+|.+..|.                     ..
T Consensus       138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------------~~  196 (343)
T 2qe8_A          138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------------LG  196 (343)
T ss_dssp             ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------------CC
T ss_pred             cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee---------------------cc
Confidence            54   678999999998887664432 111 10144556777777677776654331                     23


Q ss_pred             eEEEEEccCCCeEEEEEeCCC-cEEEEECCcc----------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          443 ITGIQFSRDESQRIMITSEDS-KLRILDGVDV----------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg-~I~iwd~~~~----------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      +..|+|+|+| +.|+.+...+ .|+.++....          ...+....+......++++++|.++++...++.|.+||
T Consensus       197 ~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          197 VNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             EEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             cceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence            5789999997 5666665554 6666653210          00111111233556789999999999988899999999


Q ss_pred             cCCCCccccccc--cCccceeEEccCCcEEEEecC
Q 005956          512 YDELCFPSSKQK--NSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       512 ~~~~~~~~~~~~--~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ..+++.......  ......++|.++|.++++...
T Consensus       276 ~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          276 SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             TTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence            855543222211  223446789898887776543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.17  E-value=4.1e-09  Score=110.63  Aligned_cols=259  Identities=10%  Similarity=0.025  Sum_probs=168.6

Q ss_pred             EEEcCCCCEEEEEEC-----CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          228 LKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       228 v~fspdg~~Latgs~-----Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ....|+++.++....     ++.|.+.|..+...                                             +
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------------------------------~   72 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------------------------I   72 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------------------------E
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------------------------------E
Confidence            345789998888766     67899999886332                                             3


Q ss_pred             eeeeccccceEEEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEeeCC--------CcEEEEEEeeCCCC
Q 005956          303 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDN  363 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~d~~  363 (667)
                      .++..-..+ . ++++|++ +|+.+.          .+++|.+||..+++.+..+.-.        .....++|+| |++
T Consensus        73 ~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk  149 (386)
T 3sjl_D           73 GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGK  149 (386)
T ss_dssp             EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSS
T ss_pred             EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCC
Confidence            333322233 3 9999999 565554          3678999999999998887521        2466799999 999


Q ss_pred             EEEEEec--CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC-CcceeeeEeeccccCcCC
Q 005956          364 YFISGSI--DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       364 ~l~sgs~--Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~-~~~~~~~~~~~~~~~~~~  440 (667)
                      +++++..  ++.|.++|+.+++++......+.  ...+....+.+++.+.||.+.+.++.. ++.... .  ........
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~-~--~~~~~~~~  224 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT-H--TEVFHPED  224 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE-E--CCCCSCTT
T ss_pred             EEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEe-e--cceecccc
Confidence            9888864  68999999999998865544332  223333456777888899999999876 444211 1  01111111


Q ss_pred             CCeE-EEEEc-cCCCeEEEEEeCCCcEEEEECCcc----eeeEEeCC--------CCCCeEEEEEcCCCCEEEEEeC---
Q 005956          441 NKIT-GIQFS-RDESQRIMITSEDSKLRILDGVDV----IHKFKGLP--------KSGSQMSASFTTTGKHIISIGD---  503 (667)
Q Consensus       441 ~~I~-~l~~s-p~g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~--------~~~~v~~v~~spdg~~l~sgs~---  503 (667)
                      .++. ...|. ++| ++++ .+.+|.|++.|+...    ...+....        .......++++++++.|+....   
T Consensus       225 ~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~  302 (386)
T 3sjl_D          225 EFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD  302 (386)
T ss_dssp             SCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred             ccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence            2222 24664 564 4444 666899999997532    22222000        0112234677999999888743   


Q ss_pred             -------CCcEEEEEcCCCCccccccccCccceeEEccCCc-EEEE
Q 005956          504 -------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV-SVAV  541 (667)
Q Consensus       504 -------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~-~lav  541 (667)
                             .+.|.+.|..+.+.............+.|++|++ .|.+
T Consensus       303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~  348 (386)
T 3sjl_D          303 EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA  348 (386)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEE
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEE
Confidence                   2579999999998765554444455679999997 4444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.11  E-value=1.4e-08  Score=104.06  Aligned_cols=228  Identities=13%  Similarity=0.090  Sum_probs=147.8

Q ss_pred             CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      ..+..+..+........|++++  ++++...++.|..|+. +++......+...+..+++.+ +++++++...++.|.+|
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence            3455566666677889999987  4667777899999998 455433334667899999999 88876665566889999


Q ss_pred             ecCCCeEEEeccc-----CCceEEEEEeeCCCEEEE----Eec-------------CCcEEEEEecCCcceeeeEeeccc
Q 005956          378 GVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHDR  435 (667)
Q Consensus       378 dl~~~~~~~~~~~-----~~~v~~v~~spdg~~l~~----gs~-------------dg~i~l~d~~~~~~~~~~~~~~~~  435 (667)
                      +.. ++...+...     ...++.++++|+|+.+++    |+.             .+.|..||..+++.....    . 
T Consensus       113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~-  186 (305)
T 3dr2_A          113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----D-  186 (305)
T ss_dssp             CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----E-
T ss_pred             CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----c-
Confidence            986 554433221     234678999999998776    332             245666666555443221    1 


Q ss_pred             cCcCCCCeEEEEEccCCCeEEEEEeCC------CcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          436 KKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       436 ~~~~~~~I~~l~~sp~g~~~l~~~s~d------g~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                          ......++|+|++ +.|+++...      +.|++||+....    ..+... .......++++++|++.++ ..+ 
T Consensus       187 ----~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~-~~~-  258 (305)
T 3dr2_A          187 ----LDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSS-SGT-  258 (305)
T ss_dssp             ----ESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEEC-CSS-
T ss_pred             ----CCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEe-cCC-
Confidence                1456789999997 555555544      789999865321    111111 2344567899999995544 444 


Q ss_pred             cEEEEEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956          506 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      .|++|+.+.. .............++|.+++..|.++..
T Consensus       259 gv~~~~~~g~-~~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          259 GVCVFDSDGQ-LLGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EEEEECTTSC-EEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             cEEEECCCCC-EEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence            4999998543 3222222223556789898888877654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.09  E-value=9.7e-09  Score=108.17  Aligned_cols=133  Identities=8%  Similarity=0.041  Sum_probs=105.6

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .+.+ |+.|+|  |+++|+++ .++.|++||+.+..                                            
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~--------------------------------------------  117 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS--------------------------------------------  117 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--------------------------------------------
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--------------------------------------------
Confidence            4666 999999  99999999 88999999998632                                            


Q ss_pred             CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                       .......|...|.++.+.+.+ +++++.||+|.+||+.++....   +...|+|++|+| +|  ++.|..||++++|+.
T Consensus       118 -~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~  189 (388)
T 1xip_A          118 -EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW  189 (388)
T ss_dssp             -CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred             -ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence             122334556667787776544 8889999999999999887654   456899999999 77  678999999999999


Q ss_pred             CCCeE--EE-e------c---ccCCceEEEEEeeCCCEEEE
Q 005956          380 CEKRV--VD-W------A---DVRDVISAICYIPDGKGFIV  408 (667)
Q Consensus       380 ~~~~~--~~-~------~---~~~~~v~~v~~spdg~~l~~  408 (667)
                      ..+.+  .. +      .   .+...|.+++|.+++.++++
T Consensus       190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            88774  22 2      1   25678999999999988876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.05  E-value=1.5e-08  Score=108.07  Aligned_cols=224  Identities=13%  Similarity=0.080  Sum_probs=145.8

Q ss_pred             EEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEeeCC--------CcEEEEEEeeCCCCEEEEEec--CC
Q 005956          314 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG  372 (667)
Q Consensus       314 ~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~d~~~l~sgs~--Dg  372 (667)
                      .+.++|++ +|+.+.          .++.|.++|..+++.+..+...        .....+.|+| ++++++++..  ++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~  200 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP  200 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence            79999999 565554          4679999999999998877532        3456789999 9999998874  57


Q ss_pred             eEEEEecCCCeEEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC-eEEEEEcc
Q 005956          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFSR  450 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~-I~~l~~sp  450 (667)
                      .|.+.|+.+++++........   ....|+| +.+++.+.||.+.+.++.+++.... ..  ........+ ...+.|.+
T Consensus       201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-~~--~~~~v~~~p~~~~~~~~~  274 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVT-NT--EVFHTEDELLINHPAFSL  274 (426)
T ss_dssp             EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-EC--CCCSCTTSCBCSCCEECT
T ss_pred             eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-ee--eeeccCCCceeeEeeecC
Confidence            899999999998765444332   2344544 5566677788888888854443321 00  000000111 12456788


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcce----eeEEeCC--------CCCCeEEEEEcCCCCEEEEEeC----------CCcEE
Q 005956          451 DESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRVY  508 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~--------~~~~v~~v~~spdg~~l~sgs~----------Dg~I~  508 (667)
                      ++ ..++..+..+.|.+.|.....    ..+....        .......++++|+++.+++...          ++.|.
T Consensus       275 dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs  353 (426)
T 3c75_H          275 RS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV  353 (426)
T ss_dssp             TT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence            86 455555678899999975321    1111100        0011113689999998877642          35799


Q ss_pred             EEEcCCCCccccccccCccceeEEccCCc-EEEEecCC
Q 005956          509 VWNYDELCFPSSKQKNSVRSCEHFFSEGV-SVAVQWPG  545 (667)
Q Consensus       509 iWd~~~~~~~~~~~~~~~~~~~~fs~dg~-~lav~w~~  545 (667)
                      +.|..+.+.............+.|+|||+ .+.+++..
T Consensus       354 VID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~  391 (426)
T 3c75_H          354 VLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG  391 (426)
T ss_dssp             EEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT
T ss_pred             EEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC
Confidence            99999988765554444456679999999 77776643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.02  E-value=8.7e-09  Score=118.29  Aligned_cols=225  Identities=12%  Similarity=0.044  Sum_probs=142.5

Q ss_pred             ccccceEEEEecCCC-eEEE-Ee----CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC--------
Q 005956          307 GHKGDVLDLAWSNSN-YLLS-CS----MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--------  372 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s-~s----~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg--------  372 (667)
                      +|...+..++||||| +|+. .+    .+.+|++||+.+++.+...........++|+  |++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence            355678899999999 5653 22    2357999999999876542221113567898  677888877774        


Q ss_pred             -----eEEEEecCCCe----EEE-ecc-cCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceeeeEeeccccC
Q 005956          373 -----KVRIWGVCEKR----VVD-WAD-VRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKK  437 (667)
Q Consensus       373 -----~v~iwdl~~~~----~~~-~~~-~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~~~~~~~~~~  437 (667)
                           .|++|++.+..    ++. ... +...+..+.++|||++|++....    ..|.++|+.+.......+...    
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~----  279 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD----  279 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS----
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC----
Confidence                 39999998754    222 222 34457889999999998765532    488999987664333322221    


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---cE
Q 005956          438 TSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RV  507 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---~I  507 (667)
                        ....... ++++|..+++.+..+   +.|.++|+....    ..+..  +...+.  .|++++++|+....++   .|
T Consensus       280 --~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          280 --LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             --SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             --CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence              1333343 666666677776654   579999987532    23333  444444  8899999888776544   68


Q ss_pred             EEEEcCCCCccccc-cccCccceeEEccCCcEEEEecC
Q 005956          508 YVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       508 ~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ++|+++++...... ........+.+++++..+++...
T Consensus       353 ~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~s  390 (693)
T 3iuj_A          353 EQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFE  390 (693)
T ss_dssp             EEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred             EEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEec
Confidence            99998865432221 12223334566778877776544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.00  E-value=1.4e-07  Score=99.78  Aligned_cols=190  Identities=9%  Similarity=0.095  Sum_probs=127.0

Q ss_pred             eEEEEecCCCeEEEEeCC------CcEEEEecCCCeEeEEeeCC----CcEEEEEEeeCCCCEEEEEe------------
Q 005956          312 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPIDDNYFISGS------------  369 (667)
Q Consensus       312 V~~l~~s~~~~l~s~s~D------g~I~iWd~~~~~~~~~~~h~----~~V~~l~f~p~d~~~l~sgs------------  369 (667)
                      -..+...|+|.++++..+      +.|.+.|..+.+.+..+...    ..-+.+.|+| +.+.+++..            
T Consensus       140 Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccc
Confidence            455677899955555544      78999999999999988522    2344678899 888888874            


Q ss_pred             -------cCCeEEEEecCCCeEEEecccC---CceEEEEE--eeCCCEEEEEec------CCcEEEEEecCCcceee-eE
Q 005956          370 -------IDGKVRIWGVCEKRVVDWADVR---DVISAICY--IPDGKGFIVGSI------TGTCHFYKASGNDLKLE-KV  430 (667)
Q Consensus       370 -------~Dg~v~iwdl~~~~~~~~~~~~---~~v~~v~~--spdg~~l~~gs~------dg~i~l~d~~~~~~~~~-~~  430 (667)
                             .+.+|.+||+.+++++......   .....+.|  +|+|+++.+++.      +++|.+|....+..... .+
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence                   3689999999998877644442   34555655  999999888774      56888877765544333 22


Q ss_pred             eeccccCc------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-----ceeeEEeCCC-----------
Q 005956          431 DFHDRKKT------------SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-----VIHKFKGLPK-----------  482 (667)
Q Consensus       431 ~~~~~~~~------------~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-----~~~~~~~~~~-----------  482 (667)
                      .+......            .......|.+++||..+.++.-..+.|.+||+.+     .+.....-+.           
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence            22111000            0245789999999844444445578999999752     1222221100           


Q ss_pred             -CCCeEEEEEcCCCCEEEEEe
Q 005956          483 -SGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       483 -~~~v~~v~~spdg~~l~sgs  502 (667)
                       .+....+.++|||++|+++.
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence             01357899999999999987

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.94  E-value=8.3e-09  Score=108.29  Aligned_cols=247  Identities=7%  Similarity=-0.044  Sum_probs=150.5

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCC
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS  283 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (667)
                      ...++..-..+  .+.|+|||++|+.+.          .++.|.+||..++..                           
T Consensus        58 v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---------------------------  108 (368)
T 1mda_H           58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---------------------------  108 (368)
T ss_dssp             EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------------------------
T ss_pred             EEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---------------------------
Confidence            33444433445  799999999888886          368899999997543                           


Q ss_pred             CCceeecCCCcccccCCcceeeecc-------ccceEEEEecCCC-eEEEEeC--CCcEEE--EecCCCeEeEEeeCCCc
Q 005956          284 SHVPVVIPDEVFQIEESPLQELHGH-------KGDVLDLAWSNSN-YLLSCSM--DKTVRM--WQVGCNQCLNVFDHHNY  351 (667)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~l~gh-------~~~V~~l~~s~~~-~l~s~s~--Dg~I~i--Wd~~~~~~~~~~~h~~~  351 (667)
                                        +.++.-+       ......++++||| +|+.+..  +..|.+  +|+.+   +..+.....
T Consensus       109 ------------------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~  167 (368)
T 1mda_H          109 ------------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC  167 (368)
T ss_dssp             ------------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC
T ss_pred             ------------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc
Confidence                              2222211       1234578999999 7777664  467888  99877   444432221


Q ss_pred             EEEEEEeeCCCCEEEEEecCCeEEEEecCC-----CeEEE----ecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEec
Q 005956          352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVD----WAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKAS  421 (667)
Q Consensus       352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-----~~~~~----~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~  421 (667)
                         +.+.|.....+++.+.|+.+.+.|+.+     +++..    ... ...+.   . .+++..++..+. +.+.+.|+.
T Consensus       168 ---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~  239 (368)
T 1mda_H          168 ---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIP  239 (368)
T ss_dssp             ---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECC
T ss_pred             ---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECC
Confidence               223453455667777899998899887     44331    111 12222   3 677777777777 999999987


Q ss_pred             CCcceee-eEeeccc----cCcCCCCeEEEEEccCCCeEEEEEe---C-----CCcEEEEECCcc--eeeEEeCCCCCCe
Q 005956          422 GNDLKLE-KVDFHDR----KKTSGNKITGIQFSRDESQRIMITS---E-----DSKLRILDGVDV--IHKFKGLPKSGSQ  486 (667)
Q Consensus       422 ~~~~~~~-~~~~~~~----~~~~~~~I~~l~~sp~g~~~l~~~s---~-----dg~I~iwd~~~~--~~~~~~~~~~~~v  486 (667)
                      +...... .+.+...    ..........+.++|++...+++..   .     ++.+.++|+.+.  +..+..   ....
T Consensus       240 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---g~~p  316 (368)
T 1mda_H          240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---GHDS  316 (368)
T ss_dssp             SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---EEEE
T ss_pred             CCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---CCCc
Confidence            5432211 2211100    0000011222689999755444444   2     245669998754  333332   2257


Q ss_pred             EEEEEcCCCCE-EEEEe-CCCcEEEEEcCCCCccccc
Q 005956          487 MSASFTTTGKH-IISIG-DDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       487 ~~v~~spdg~~-l~sgs-~Dg~I~iWd~~~~~~~~~~  521 (667)
                      ..++|+|||++ +++.. .++.|.++|+.+.+.....
T Consensus       317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I  353 (368)
T 1mda_H          317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence            88999999984 55555 5899999999998765443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.82  E-value=6.5e-06  Score=82.09  Aligned_cols=200  Identities=9%  Similarity=0.008  Sum_probs=127.8

Q ss_pred             cceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956          310 GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~  386 (667)
                      ..+..++|++++ .| ++-..++.|..++.........+. .......+++.|..+.++++-...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            457889999854 44 455567899999998765444443 225788999998334445555566889999987644322


Q ss_pred             ecc-cCCceEEEEEeeCCCEEEEEec---CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          387 WAD-VRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       387 ~~~-~~~~v~~v~~spdg~~l~~gs~---dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                      ... .......++++|++..|.++..   .+.|..+++.......  +. ..    .......+++++++..++++-...
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~~-~~----~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LA-QD----NLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EE-CT----TCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--EE-EC----CCCCCcEEEEcCCCCEEEEEECCC
Confidence            222 2256789999997666665553   3678888876533211  11 11    124578999999865666666677


Q ss_pred             CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccc
Q 005956          463 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPS  519 (667)
Q Consensus       463 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~  519 (667)
                      +.|.++|........... .......+++.  +.+|+.+. ..+.|.++|..+++...
T Consensus       189 ~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~  243 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD  243 (267)
T ss_dssp             TEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceE
Confidence            899999986432211111 23345667664  45555554 56899999998876543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.79  E-value=1e-07  Score=99.40  Aligned_cols=233  Identities=13%  Similarity=0.074  Sum_probs=146.2

Q ss_pred             cccccEEEEEEcCCCCEEEEEEC-----CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~-----Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      +|-..+..|+|+++|+++++-..     ++.|.+||+.++......-                                 
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~---------------------------------  110 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY---------------------------------  110 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEE---------------------------------
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE---------------------------------
Confidence            56778999999999986666543     5789999988643211100                                 


Q ss_pred             ccccCCcceeeeccccceEEEEecCC-Ce-EEEEe---CCCcEEEEecCCCeEeEEeeC-CCcE-EEEEEeeCCCCEEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNS-NY-LLSCS---MDKTVRMWQVGCNQCLNVFDH-HNYV-TCVQFNPIDDNYFIS  367 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~-~~-l~s~s---~Dg~I~iWd~~~~~~~~~~~h-~~~V-~~l~f~p~d~~~l~s  367 (667)
                        +... .   ..+...+..+++.++ +. +++-.   .++.|.+||+.+++..+.+.. .... ....+.+ ++..+.+
T Consensus       111 --~~~~-~---~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~  183 (343)
T 2qe8_A          111 --LPPP-I---TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI-DGVPVQI  183 (343)
T ss_dssp             --CCTT-T---SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE-TTEECBE
T ss_pred             --CChh-h---cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE-CCEEEEe
Confidence              0000 0   123345688999875 44 45555   678999999998887776642 1110 0134555 6777777


Q ss_pred             EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc-----ee----eeEeeccccCc
Q 005956          368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-----KL----EKVDFHDRKKT  438 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~-----~~----~~~~~~~~~~~  438 (667)
                      .+.++.++.|.             ..+..++++|+|+.|+++...+. ++|.+.....     ..    ..+...+    
T Consensus       184 ~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g----  245 (343)
T 2qe8_A          184 GQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYS----  245 (343)
T ss_dssp             ECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEE----
T ss_pred             ccCCCceecee-------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecc----
Confidence            77788776653             23678999999999988877663 4444432110     00    0001111    


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC-CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          439 SGNKITGIQFSRDESQRIMITSEDSKLRILDG-VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      +......+++.++| .++++...++.|.+||. ......+........+.+++|.++|.++++.+..+.+.+|+
T Consensus       246 ~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          246 EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            11345679999986 78888888899999998 32223333222356688999999998888877555544443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.77  E-value=6.3e-07  Score=94.77  Aligned_cols=218  Identities=8%  Similarity=0.017  Sum_probs=140.1

Q ss_pred             CCC--eEEEEeCCCcEEEEecCCC----eEeEEee-------CC-CcEEEEEEeeCCCCEEEEEecC------CeEEEEe
Q 005956          319 NSN--YLLSCSMDKTVRMWQVGCN----QCLNVFD-------HH-NYVTCVQFNPIDDNYFISGSID------GKVRIWG  378 (667)
Q Consensus       319 ~~~--~l~s~s~Dg~I~iWd~~~~----~~~~~~~-------h~-~~V~~l~f~p~d~~~l~sgs~D------g~v~iwd  378 (667)
                      +++  .++++..+.+|.|+|+.+.    +..+++.       .. .....+...| ++ +++++..+      +.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence            666  5667778899999999765    6666662       12 2566788889 77 77776665      7899999


Q ss_pred             cCCCeEEEecccC----CceEEEEEeeCCCEEEEEe-------------------cCCcEEEEEecCCcceeeeEeeccc
Q 005956          379 VCEKRVVDWADVR----DVISAICYIPDGKGFIVGS-------------------ITGTCHFYKASGNDLKLEKVDFHDR  435 (667)
Q Consensus       379 l~~~~~~~~~~~~----~~v~~v~~spdg~~l~~gs-------------------~dg~i~l~d~~~~~~~~~~~~~~~~  435 (667)
                      ..+.+++......    ..-..+-|+|+++.+++..                   ...+|.+||+.+.+... .+.+...
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~-tI~vg~~  249 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH-SLTLGEE  249 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE-EEESCTT
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee-EEecCCC
Confidence            9999887533221    2244588899999888874                   36799999998764332 3333110


Q ss_pred             cCcCCCCeEEEEE--ccCCCeEEEEEe-----CCCcEEEEECCcc----eeeEEeCC----C------------CCCeEE
Q 005956          436 KKTSGNKITGIQF--SRDESQRIMITS-----EDSKLRILDGVDV----IHKFKGLP----K------------SGSQMS  488 (667)
Q Consensus       436 ~~~~~~~I~~l~~--sp~g~~~l~~~s-----~dg~I~iwd~~~~----~~~~~~~~----~------------~~~v~~  488 (667)
                          ......+.|  +|++...++++-     .+++|.+|.....    .+.+....    .            ......
T Consensus       250 ----g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          250 ----NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             ----EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             ----CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence                122344555  999744444444     6678877543211    11111100    0            245678


Q ss_pred             EEEcCCCCEEEEEeC-CCcEEEEEcCCCCcccc---cccc-----------C----ccceeEEccCCcEEEEec
Q 005956          489 ASFTTTGKHIISIGD-DCRVYVWNYDELCFPSS---KQKN-----------S----VRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       489 v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~~~~---~~~~-----------~----~~~~~~fs~dg~~lav~w  543 (667)
                      +.+|+||++|+++.. .+.|.+||+.+......   ....           .    -...+.++|||+.|.++-
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999999988865 57999999964422111   1111           0    135679999999988864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.76  E-value=7.1e-07  Score=101.81  Aligned_cols=209  Identities=10%  Similarity=0.056  Sum_probs=137.0

Q ss_pred             CCcEEEEecCCCeEeEEeeCCCc---------------------------------EEEEEEeeCCCCEEEEEecCC---
Q 005956          329 DKTVRMWQVGCNQCLNVFDHHNY---------------------------------VTCVQFNPIDDNYFISGSIDG---  372 (667)
Q Consensus       329 Dg~I~iWd~~~~~~~~~~~h~~~---------------------------------V~~l~f~p~d~~~l~sgs~Dg---  372 (667)
                      ++.|+.+|..+++.+..+.....                                 ...+++.| ++++++.++.++   
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w  267 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW  267 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence            78999999999999887752111                                 12467888 778888887664   


Q ss_pred             ----------------eEEEEecCCCeEEEecc---c-------CCceEEEEEeeCC---CEEEEEecCCcEEEEEecCC
Q 005956          373 ----------------KVRIWGVCEKRVVDWAD---V-------RDVISAICYIPDG---KGFIVGSITGTCHFYKASGN  423 (667)
Q Consensus       373 ----------------~v~iwdl~~~~~~~~~~---~-------~~~v~~v~~spdg---~~l~~gs~dg~i~l~d~~~~  423 (667)
                                      .|..+|..+++.+-...   +       ......+....+|   ..+++++.+|.++++|..++
T Consensus       268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence                            59999999998764321   1       1223334444578   67899999999999999988


Q ss_pred             cceeeeEeecccc-----CcCCC------------------------CeEEEEEccCCCeEEEEEeC-------------
Q 005956          424 DLKLEKVDFHDRK-----KTSGN------------------------KITGIQFSRDESQRIMITSE-------------  461 (667)
Q Consensus       424 ~~~~~~~~~~~~~-----~~~~~------------------------~I~~l~~sp~g~~~l~~~s~-------------  461 (667)
                      +..... .+....     .....                        .-..++|+|++ .++++...             
T Consensus       348 ~~l~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~  425 (677)
T 1kb0_A          348 KFISAK-NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWE  425 (677)
T ss_dssp             CEEEEE-ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCC
T ss_pred             CEeccc-cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeecccccc
Confidence            875431 111000     00000                        01257888885 45555432             


Q ss_pred             ------------------------------CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          462 ------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       462 ------------------------------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                                                    .+.|..||+.+.....+.. +...+....+..++..++.++.||.+++||
T Consensus       426 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          426 FNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             TTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence                                          2779999988765555442 233344455667788999999999999999


Q ss_pred             cCCCCcccccc--ccCccceeEEccCCcEEEE
Q 005956          512 YDELCFPSSKQ--KNSVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       512 ~~~~~~~~~~~--~~~~~~~~~fs~dg~~lav  541 (667)
                      ..+++......  .......+.|..+|+.+++
T Consensus       505 ~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          505 AATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            99998865543  2233345677888874444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.73  E-value=1.2e-06  Score=99.98  Aligned_cols=212  Identities=13%  Similarity=0.083  Sum_probs=136.7

Q ss_pred             CCCcEEEEecCCCeEeEEeeCC--C-----------------------------cE-EEEEEeeCCCCEEEEEecCCe--
Q 005956          328 MDKTVRMWQVGCNQCLNVFDHH--N-----------------------------YV-TCVQFNPIDDNYFISGSIDGK--  373 (667)
Q Consensus       328 ~Dg~I~iWd~~~~~~~~~~~h~--~-----------------------------~V-~~l~f~p~d~~~l~sgs~Dg~--  373 (667)
                      .++.|..||..+++.+..+...  .                             .+ ..+++.| +.++++.++.++.  
T Consensus       181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w  259 (689)
T 1yiq_A          181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLW  259 (689)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCcc
Confidence            3789999999999998776421  0                             01 2577888 7788888887764  


Q ss_pred             -----------------EEEEecCCCeEEEecc---cC-------CceEEEEEeeCCC---EEEEEecCCcEEEEEecCC
Q 005956          374 -----------------VRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVGSITGTCHFYKASGN  423 (667)
Q Consensus       374 -----------------v~iwdl~~~~~~~~~~---~~-------~~v~~v~~spdg~---~l~~gs~dg~i~l~d~~~~  423 (667)
                                       |..+|..+++.+-...   +.       ..+.......+|+   .+++++.+|.++++|..++
T Consensus       260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence                             9999999998774222   11       1222233334665   7888999999999999988


Q ss_pred             cceeeeEeeccc----------------------cCc-----------CCCCeEEEEEccCCCeEEEEEeC---------
Q 005956          424 DLKLEKVDFHDR----------------------KKT-----------SGNKITGIQFSRDESQRIMITSE---------  461 (667)
Q Consensus       424 ~~~~~~~~~~~~----------------------~~~-----------~~~~I~~l~~sp~g~~~l~~~s~---------  461 (667)
                      +..... .+...                      ...           .......++|+|+. .++++...         
T Consensus       340 ~~l~~~-~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~  417 (689)
T 1yiq_A          340 ELLSAK-GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHI  417 (689)
T ss_dssp             CEEEEE-ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECC
T ss_pred             CEeccc-cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeec
Confidence            875321 00000                      000           00112237888875 45554421         


Q ss_pred             ------------------------------------CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          462 ------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       462 ------------------------------------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                                                          +|.|+.||+.+.....+.. +........+...+.+|+.|+.||
T Consensus       418 ~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagglvf~gt~dg  496 (689)
T 1yiq_A          418 PEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-YVTIFNGGTLSTAGNLVFEGSADG  496 (689)
T ss_dssp             SSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTS
T ss_pred             cccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-CCCCccCccceECCCEEEEECCCC
Confidence                                                3779999998766555543 222233335556788999999999


Q ss_pred             cEEEEEcCCCCccccccc--cCccceeEEccCCc-EEEEec
Q 005956          506 RVYVWNYDELCFPSSKQK--NSVRSCEHFFSEGV-SVAVQW  543 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~~~~--~~~~~~~~fs~dg~-~lav~w  543 (667)
                      .|+.||.++++.......  ......+.|..||+ ++++..
T Consensus       497 ~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          497 RVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            999999999998765432  23334467888887 555543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.72  E-value=4.4e-07  Score=99.27  Aligned_cols=222  Identities=11%  Similarity=0.063  Sum_probs=146.9

Q ss_pred             CCC-eEE-EEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEE-e-eCCCCEEEEEe------------------cCCeE
Q 005956          319 NSN-YLL-SCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQF-N-PIDDNYFISGS------------------IDGKV  374 (667)
Q Consensus       319 ~~~-~l~-s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f-~-p~d~~~l~sgs------------------~Dg~v  374 (667)
                      +|| +|+ +...+..|.+.|+.+.++.+.+.  ....+..+++ . | ++.++++++                  .++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence            366 444 44556679999999999988554  4567889998 4 7 888888884                  34679


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC--------------------------------------cEE
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--------------------------------------TCH  416 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg--------------------------------------~i~  416 (667)
                      .++|..+.++.......+....++++|+|+++++.+.+.                                      .+.
T Consensus       178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            999999998876555444567788999999999988553                                      244


Q ss_pred             EEEecC--CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-----------eEEeCCCC
Q 005956          417 FYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------KFKGLPKS  483 (667)
Q Consensus       417 l~d~~~--~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-----------~~~~~~~~  483 (667)
                      +.|..+  +......+..       .....++.++|||...++++..+.+|.++|..+...           ......-.
T Consensus       258 VID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG  330 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  330 (595)
T ss_dssp             EEECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred             EEeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence            444443  1110111111       134567999999865666666788999999875421           11112235


Q ss_pred             CCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCC----------CccccccccC------ccceeEEccCCcEEEEecCCC
Q 005956          484 GSQMSASFTTTGKHIIS-IGDDCRVYVWNYDEL----------CFPSSKQKNS------VRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       484 ~~v~~v~~spdg~~l~s-gs~Dg~I~iWd~~~~----------~~~~~~~~~~------~~~~~~fs~dg~~lav~w~~~  546 (667)
                      .....++|+|+| ++++ .-.|+.|.+||++..          ..........      ....+.++|||++|.++-...
T Consensus       331 ~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s  409 (595)
T 1fwx_A          331 LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS  409 (595)
T ss_dssp             SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred             CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence            568899999999 5554 556899999999872          1111111111      112346789999999876655


Q ss_pred             Ccc
Q 005956          547 GTE  549 (667)
Q Consensus       547 ~~~  549 (667)
                      ...
T Consensus       410 kdr  412 (595)
T 1fwx_A          410 KDR  412 (595)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.67  E-value=4.8e-06  Score=87.50  Aligned_cols=185  Identities=7%  Similarity=0.014  Sum_probs=121.1

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEE------EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCc
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV  393 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~------~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~  393 (667)
                      ++.++.++.++.|..+|..+++.+..+.....+.      ....   .+..++.++.++.|..+|..+++..........
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~  219 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA  219 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence            4578888899999999999999888876444332      2222   245778888899999999999887643322110


Q ss_pred             --------eEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          394 --------ISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       394 --------v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                              +..+...|  .+..+++++.+|.+..+|..+++....   ...      .....+... +  ..+++++.++
T Consensus       220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~---~~~------~~~~~~~~~-~--~~l~~~~~~g  287 (376)
T 3q7m_A          220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK---REL------GSVNDFIVD-G--NRIYLVDQND  287 (376)
T ss_dssp             ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE---ECC------CCEEEEEEE-T--TEEEEEETTC
T ss_pred             CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee---ccC------CCCCCceEE-C--CEEEEEcCCC
Confidence                    00010111  356788888899999999988776432   111      223444443 2  4788888899


Q ss_pred             cEEEEECCcceeeEEeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956          464 KLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       464 ~I~iwd~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~  521 (667)
                      .|..+|..+......... ....+.....  .+..|+.++.+|.|+++|..+++.....
T Consensus       288 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          288 RVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             CEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            999999876655554431 1222222233  2568889999999999999998865543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.67  E-value=1.2e-08  Score=107.66  Aligned_cols=220  Identities=11%  Similarity=0.020  Sum_probs=116.0

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccce
Q 005956          233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV  312 (667)
Q Consensus       233 dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V  312 (667)
                      ++..|++++.||.|..||..+++.                                             +..+..  +.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~---------------------------------------------~W~~~~--~~~   40 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI---------------------------------------------KWTLKE--DPV   40 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE---------------------------------------------EEEEEC--CCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE---------------------------------------------EEEecC--CCc
Confidence            567899999999999999987533                                             222222  223


Q ss_pred             EEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCC--cEE-EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec
Q 005956          313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  388 (667)
Q Consensus       313 ~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~--~V~-~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~  388 (667)
                      .+..+..++ .+++++.|+.|+.||..+++.+..+....  .+. ...+.  .+..+++++.++.|+.||..+++.+...
T Consensus        41 ~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           41 LQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             CCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC--------
T ss_pred             eecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence            333344556 77777899999999999998876664221  110 00111  3457788888999999999999876533


Q ss_pred             ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEE
Q 005956          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLR  466 (667)
Q Consensus       389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~  466 (667)
                      ....   ...++|++..+++++.++.++.||..+++.... .....        .....+.++.  ...+++++.+|.|+
T Consensus       119 ~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~-~~~~~--------~~~~~~~~~~~~~~~v~~~~~dg~v~  186 (369)
T 2hz6_A          119 SSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN-ATYFD--------YAASLPEDDVDYKMSHFVSNGDGLVV  186 (369)
T ss_dssp             -----------------EEEEEEEEEEECCCSSSSSCCCE-EEEEE--------ECCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred             cCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEe-Eeccc--------ccCccccCCccccceEEEECCCCEEE
Confidence            3322   234567888999999999999999998876443 11111        1112222321  13577889999999


Q ss_pred             EEECCcceeeEEeCCCCCCeEE-EEEcCCCCEE----EEEeCCCcEEEEEcCCCC
Q 005956          467 ILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHI----ISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       467 iwd~~~~~~~~~~~~~~~~v~~-v~~spdg~~l----~sgs~Dg~I~iWd~~~~~  516 (667)
                      .||..+.....+.. ...++.. ..++++|...    +.+  ++.++.+|..+++
T Consensus       187 a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~  238 (369)
T 2hz6_A          187 TVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGE  238 (369)
T ss_dssp             EECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHH
T ss_pred             EEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCC
Confidence            99987655555443 2344433 4456666432    122  3456666665555

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.66  E-value=5.8e-06  Score=85.00  Aligned_cols=256  Identities=13%  Similarity=0.064  Sum_probs=147.5

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      -.+++++++|++|+++..++.|..|+..+...........  ..               . .        ..........
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~--~~---------------~-~--------~~~~g~~~~~   74 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP--YW---------------N-K--------AFCENSTDAE   74 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCT--TC---------------C-H--------HHHTTCCCGG
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccc--cc---------------c-c--------cccccccchh
Confidence            4568899999988888889999999876532211100000  00               0 0        0000000000


Q ss_pred             eeccccceEEEEecC-CCeEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEec--------
Q 005956          305 LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI--------  370 (667)
Q Consensus       305 l~gh~~~V~~l~~s~-~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~--------  370 (667)
                      .......+..+++.+ ++.|+.+...+.|..+|..++.......     .......+++.+.+++++++-..        
T Consensus        75 ~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           75 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             GHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred             ccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence            001123578899997 6777777666668888887654322221     12356788888734555554322        


Q ss_pred             ---------CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCccee-eeEeeccccCcC
Q 005956          371 ---------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKL-EKVDFHDRKKTS  439 (667)
Q Consensus       371 ---------Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~-~~~~~~~~~~~~  439 (667)
                               ++.|..||..+++.......-.....++++|+|+.|+++ +..+.|..|++.+..... ..+. .  .   
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~--~---  228 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K--I---  228 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E--C---
T ss_pred             ceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e--C---
Confidence                     367889998877765443333456789999999977666 556899999987543211 1111 1  1   


Q ss_pred             CCCeEEEEEccCCCeEEEEEeC----------CCcEEEEECC-cceeeEEeCCC--CCCeEEEEEcCCCCEEEEEeCCCc
Q 005956          440 GNKITGIQFSRDESQRIMITSE----------DSKLRILDGV-DVIHKFKGLPK--SGSQMSASFTTTGKHIISIGDDCR  506 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~----------dg~I~iwd~~-~~~~~~~~~~~--~~~v~~v~~spdg~~l~sgs~Dg~  506 (667)
                      .+ ...+++.++| .++++...          .+.|..+|.. +....+.....  ...+..+++ .++++.++....+.
T Consensus       229 ~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          229 PN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS  305 (322)
T ss_dssp             SS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE
T ss_pred             CC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCc
Confidence            13 6789999997 45555433          4678888865 33334433211  234566666 35655555556788


Q ss_pred             EEEEEcCCC
Q 005956          507 VYVWNYDEL  515 (667)
Q Consensus       507 I~iWd~~~~  515 (667)
                      |.++++...
T Consensus       306 i~~~~~~~~  314 (322)
T 2fp8_A          306 VGILVYDKK  314 (322)
T ss_dssp             EEEEEC---
T ss_pred             eEEEecccc
Confidence            999987644

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.66  E-value=3.1e-07  Score=96.31  Aligned_cols=214  Identities=7%  Similarity=-0.095  Sum_probs=130.6

Q ss_pred             eEEEEeCCC----cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe----------cCCeEEEEecCCCeEEEe
Q 005956          322 YLLSCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGVCEKRVVDW  387 (667)
Q Consensus       322 ~l~s~s~Dg----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs----------~Dg~v~iwdl~~~~~~~~  387 (667)
                      .+++...++    +|.++|..+++.+..+.-...- .+.++| ++++++++.          .++.|.+||+.+++++..
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            344444444    8889999999999998733333 799999 888888876          368899999999998765


Q ss_pred             cccC--------CceEEEEEeeCCCEEEEEec--CCcEEE--EEecCCcceeeeEeeccc------------cCcCCCCe
Q 005956          388 ADVR--------DVISAICYIPDGKGFIVGSI--TGTCHF--YKASGNDLKLEKVDFHDR------------KKTSGNKI  443 (667)
Q Consensus       388 ~~~~--------~~v~~v~~spdg~~l~~gs~--dg~i~l--~d~~~~~~~~~~~~~~~~------------~~~~~~~I  443 (667)
                      ....        .....+.++|||++++++..  ...+.+  +|+.+    ...+...+.            .....+.+
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCCCE
Confidence            4322        34678999999999999875  356888  88865    111111000            00000000


Q ss_pred             EEEE--------------------------EccCCCeEEEEEeCCCcEEEEECCcce----eeEEeCC-----CC---CC
Q 005956          444 TGIQ--------------------------FSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLP-----KS---GS  485 (667)
Q Consensus       444 ~~l~--------------------------~sp~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~-----~~---~~  485 (667)
                      ..+.                          ..++++. ++..+. +.|.+.|.....    ..+....     +.   ..
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g  265 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCccccccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence            0010                          1333323 333333 778888864321    1111000     00   01


Q ss_pred             eEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956          486 QMSASFTTTGKHIISIGD---------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       486 v~~v~~spdg~~l~sgs~---------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      ...++++||+++++.+..         ++.+.++|+.+.+.............+.|+|||+.+.++-
T Consensus       266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~  332 (368)
T 1mda_H          266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred             ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEc
Confidence            111679999998887643         2356699999988765554444566689999998554443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.65  E-value=4.9e-09  Score=110.72  Aligned_cols=201  Identities=8%  Similarity=0.033  Sum_probs=110.3

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-eccc-CCceE-E
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDVIS-A  396 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~-~~~v~-~  396 (667)
                      ++.+++++.|+.|+.||..+++.+..+.. ..+.+..+.. ++..+++++.|+.|+.||..+++.+. +..+ ...+. +
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            45899999999999999999999988876 5555555555 67778888899999999998887543 2211 11111 1


Q ss_pred             EEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceee
Q 005956          397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK  476 (667)
Q Consensus       397 v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~  476 (667)
                      .++. ++..+++|+.++.++.||..+++.... +...       .   ...++|++ ..+++++.++.|+.||..+....
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~-~~~~-------~---~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT-LSSA-------F---ADSLSPST-SLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE-ecCC-------C---cccccccC-CEEEEEecCCEEEEEECCCCCEE
Confidence            1111 345778888999999999998876432 1111       1   13445654 68888999999999997654322


Q ss_pred             EEeCCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCCcccccccc-CccceeEEccCCc
Q 005956          477 FKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYDELCFPSSKQKN-SVRSCEHFFSEGV  537 (667)
Q Consensus       477 ~~~~~~~~~v~~v~~spdg---~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~~~~~fs~dg~  537 (667)
                      ......  .....+++.+.   ..+++++.||.|+.||..+++..+..... .+.....++++|.
T Consensus       154 W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          154 WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             EeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            221100  01122333332   56777889999999999999876654322 2223334555554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.64  E-value=1.1e-05  Score=84.79  Aligned_cols=189  Identities=12%  Similarity=0.021  Sum_probs=121.6

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEE-EEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCce----
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI----  394 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~-l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v----  394 (667)
                      ++.++.++.++.|..+|..+++.+..+.....+.+ ...   .+..++.++.++.|..+|..+++.+........+    
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            56888899999999999999998877764333221 122   2457888889999999999999876543332222    


Q ss_pred             --EEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC-CCC---e-EEEEEccCCCeEEEEEeCCCcEEE
Q 005956          395 --SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNK---I-TGIQFSRDESQRIMITSEDSKLRI  467 (667)
Q Consensus       395 --~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~-~~~---I-~~l~~sp~g~~~l~~~s~dg~I~i  467 (667)
                        .....  .+..+++++.+|.+..+|..+++..... ......... ...   + ...... +  ..+++++.++.+..
T Consensus       180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTA  253 (376)
T ss_dssp             CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEE-ECCC-----------CCCCCCEEE-T--TEEEEECTTSCEEE
T ss_pred             CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCcccccccccCCCcEEE-C--CEEEEEecCcEEEE
Confidence              12222  2457888889999999999887765431 111000000 000   0 011111 2  37788888999999


Q ss_pred             EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956          468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       468 wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~  521 (667)
                      +|..+........  ......+..  ++..|+.++.++.|+.+|..+++.....
T Consensus       254 ~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          254 LDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             EETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             EECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence            9987665555542  233444444  4678888888999999999998865543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.60  E-value=1e-05  Score=80.33  Aligned_cols=198  Identities=8%  Similarity=0.003  Sum_probs=132.1

Q ss_pred             ceEEEEecCCCeEE-EEeC--CCcEEEEecCCCeEeEEeeCCC--cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956          311 DVLDLAWSNSNYLL-SCSM--DKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       311 ~V~~l~~s~~~~l~-s~s~--Dg~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      ....+.|++++.|+ +.+.  ++.|+++|+.+++.+..+....  ....+++.  ++.++++.-.++.+.++|..+.+++
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            46899999988444 4443  5799999999999998876333  33455554  3445555556789999999999887


Q ss_pred             EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 005956          386 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  465 (667)
Q Consensus       386 ~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I  465 (667)
                      ...... ......+++||+.++++..++.+.++|..+.+.... +..... ......++.+.|. +| ..++....++.|
T Consensus       100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~-I~Vg~~-~~p~~~~nele~~-dg-~lyvn~~~~~~V  174 (266)
T 2iwa_A          100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK-HNVKYN-GHRVIRLNELEYI-NG-EVWANIWQTDCI  174 (266)
T ss_dssp             EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred             EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE-EEECCC-CcccccceeEEEE-CC-EEEEecCCCCeE
Confidence            644333 112244667888888887889999999988765443 222111 0111346788888 54 555555567899


Q ss_pred             EEEECCcc--eeeEEeC-----------CCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCC
Q 005956          466 RILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHII-SIGDDCRVYVWNYDEL  515 (667)
Q Consensus       466 ~iwd~~~~--~~~~~~~-----------~~~~~v~~v~~spdg~~l~-sgs~Dg~I~iWd~~~~  515 (667)
                      .+.|..+.  ...+...           ........++|+|+++.++ ++...+.|++-++...
T Consensus       175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            99998753  3344321           0123568999999987655 4556788998888654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.60  E-value=8.6e-06  Score=80.87  Aligned_cols=208  Identities=11%  Similarity=0.024  Sum_probs=136.3

Q ss_pred             ceeeccccc--cEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          215 SQEIQAHKG--CIWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       215 ~~~l~~H~~--~I~~v~fspdg~~Latgs~--Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      .+++ .|..  ....+.|+||+.+.++.+.  ++.|++.|+.+++......                             
T Consensus        12 v~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------------------   61 (266)
T 2iwa_A           12 LNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-----------------------------   61 (266)
T ss_dssp             EEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-----------------------------
T ss_pred             EEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-----------------------------
Confidence            3444 3543  3579999999765555553  5799999999754422110                             


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCC-CcEEEEEEeeCCCCEEEEEe
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~d~~~l~sgs  369 (667)
                                    +..+ .....+++..+...++.-.++.+.++|..+.+.+..+... ..-  ..+.+ +++.++.+.
T Consensus        62 --------------l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~glt~-Dg~~l~vs~  123 (266)
T 2iwa_A           62 --------------MDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGLAT-DGKILYGSD  123 (266)
T ss_dssp             --------------CCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEEEE-CSSSEEEEC
T ss_pred             --------------cCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEEEE-CCCEEEEEC
Confidence                          1111 1122455553334455567899999999999999988654 322  33556 666666666


Q ss_pred             cCCeEEEEecCCCeEEEecccC------CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc-------c
Q 005956          370 IDGKVRIWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------K  436 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~~~~~~------~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~-------~  436 (667)
                      .++.|.++|..+.++.......      ..++.+.|. +|..++....++.|.+.|..+++... .+.+.+.       .
T Consensus       124 gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~-~I~~~g~~~~~~~~~  201 (266)
T 2iwa_A          124 GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG-WILLPNLRKKLIDEG  201 (266)
T ss_dssp             SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE-EEECHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE-EEECCCccccccccc
Confidence            7899999999998766533221      236788887 77555444467899999999887643 3443221       1


Q ss_pred             CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956          437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                      .........|+|+|++..+++++...+.|.+.++..
T Consensus       202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            112245689999999877777787888998888643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.59  E-value=1.3e-06  Score=95.52  Aligned_cols=234  Identities=12%  Similarity=0.072  Sum_probs=152.0

Q ss_pred             CCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeecccc
Q 005956          232 PDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKG  310 (667)
Q Consensus       232 pdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~  310 (667)
                      +||++|+.... +..|.+-|+.+.++..+.                                           ++. ...
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-------------------------------------------~ip-~g~  134 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL-------------------------------------------EIP-NAK  134 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEE-------------------------------------------ECS-SCC
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEE-------------------------------------------eCC-CCC
Confidence            48888888765 456999999875432211                                           111 112


Q ss_pred             ceEEEEe-c-CCC-eEEEEe------------------CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe
Q 005956          311 DVLDLAW-S-NSN-YLLSCS------------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       311 ~V~~l~~-s-~~~-~l~s~s------------------~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                      .+..+++ + |++ +++.++                  .++.+.+.|.++.+.+..+.-......++++| +++++++.+
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEe
Confidence            3556666 3 666 666553                  34689999999999888886444567788999 888888887


Q ss_pred             cCC--------------------------------------eEEEEecCC--CeE-EEecccCCceEEEEEeeCCCEEEE
Q 005956          370 IDG--------------------------------------KVRIWGVCE--KRV-VDWADVRDVISAICYIPDGKGFIV  408 (667)
Q Consensus       370 ~Dg--------------------------------------~v~iwdl~~--~~~-~~~~~~~~~v~~v~~spdg~~l~~  408 (667)
                      .+.                                      .|.+.|..+  ++. +..........++.++|||+++++
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V  293 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV  293 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence            553                                      366677776  433 334444456778999999998887


Q ss_pred             Ee-cCCcEEEEEecCCcce------ee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--------
Q 005956          409 GS-ITGTCHFYKASGNDLK------LE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------  472 (667)
Q Consensus       409 gs-~dg~i~l~d~~~~~~~------~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--------  472 (667)
                      ++ .+.+|.++|+.+.+..      .. .+..   ....+.....++|+|+| ...++.--|++|.+||+..        
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~  369 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE  369 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEE---EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc
Confidence            66 5789999999864310      00 0000   11123567889999998 7677778899999999654        


Q ss_pred             ----ceeeEEeCCCCCCe-----EEEEEcCCCCEEEEEeC---CCcE----------EEEEcCCCC
Q 005956          473 ----VIHKFKGLPKSGSQ-----MSASFTTTGKHIISIGD---DCRV----------YVWNYDELC  516 (667)
Q Consensus       473 ----~~~~~~~~~~~~~v-----~~v~~spdg~~l~sgs~---Dg~I----------~iWd~~~~~  516 (667)
                          .+.++..  |..+-     ..+.++|||++|+++..   |+.+          .++|+.+++
T Consensus       370 ~~~~vi~kidV--~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          370 KVDPIKDKLDV--HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             SCCCEEEEEEC--SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             ccceeEEEeec--ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence                2222222  22211     12245899999999853   4431          788886554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.48  E-value=2.3e-05  Score=77.00  Aligned_cols=194  Identities=9%  Similarity=0.050  Sum_probs=126.1

Q ss_pred             ceeeecccc--ceEEEEecCCC-eEEEEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          302 LQELHGHKG--DVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       302 ~~~l~gh~~--~V~~l~~s~~~-~l~s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      +.++ .|..  -...|.|+ ++ ++.+.+.+|  .|+++|+.+++.+..+............+.++.+++..-.++.+.+
T Consensus        34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence            4444 4443  45889998 56 666777766  8999999999999988755544443333313444455556899999


Q ss_pred             EecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeE
Q 005956          377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR  455 (667)
Q Consensus       377 wdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~  455 (667)
                      ||..+.+++........-  ..+.+|++.|++...++.|.++|..+.+.... .+...+.   ....++.+.|. +| ..
T Consensus       112 ~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~---~~~~lNELe~~-~G-~l  184 (262)
T 3nol_A          112 WNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE---ELPELNELEWV-DG-EI  184 (262)
T ss_dssp             EETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE---ECCCEEEEEEE-TT-EE
T ss_pred             EECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc---cccccceeEEE-CC-EE
Confidence            999999887654443322  33447788888877778899999988776544 2221111   11345567776 54 55


Q ss_pred             EEEEeCCCcEEEEECCcc--eeeEEeC----------CCCCCeEEEEEcCCCCEEEEEeCC
Q 005956          456 IMITSEDSKLRILDGVDV--IHKFKGL----------PKSGSQMSASFTTTGKHIISIGDD  504 (667)
Q Consensus       456 l~~~s~dg~I~iwd~~~~--~~~~~~~----------~~~~~v~~v~~spdg~~l~sgs~D  504 (667)
                      .+..-.++.|.+.|..+.  ...+...          ......+.++|+|+++.|+..+..
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            555556889999997643  3333321          112456899999998888877753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.47  E-value=0.0002  Score=72.91  Aligned_cols=226  Identities=12%  Similarity=0.062  Sum_probs=136.5

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      .....++|+++|+++++-..++.|..||.....                                              .
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~----------------------------------------------~   65 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----------------------------------------------Q   65 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE----------------------------------------------E
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce----------------------------------------------E
Confidence            456789999999977777678888888765310                                              0


Q ss_pred             eeeeccccceEEEEecCCCeEEEEe-C-CC-cEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          303 QELHGHKGDVLDLAWSNSNYLLSCS-M-DK-TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~~l~s~s-~-Dg-~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      ..+ .....+..+++.+++.|+.+. . ++ .|..++..+++......  .......++..+ ++..+++-..++.|+.+
T Consensus        66 ~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~  143 (306)
T 2p4o_A           66 IHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLI  143 (306)
T ss_dssp             EEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEE
T ss_pred             EEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEE
Confidence            001 112357889999998444333 2 22 46667777777654443  223344555554 44444444458899999


Q ss_pred             ecCCCe--EEEec---------ccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecC-CcceeeeEeeccccCcCCCCeE
Q 005956          378 GVCEKR--VVDWA---------DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       378 dl~~~~--~~~~~---------~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~-~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      |..+++  +....         ..-...+.+  +|+++.|+++. ..+.|..|++.. +..........      .....
T Consensus       144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~  215 (306)
T 2p4o_A          144 DVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------QTNID  215 (306)
T ss_dssp             ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------SCCCS
T ss_pred             eCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------cCCCC
Confidence            987653  32110         111234555  88887766654 567899999875 22211111111      13456


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEEEEc---CCCCEEEEEeCCC
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFT---TTGKHIISIGDDC  505 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~s---pdg~~l~sgs~Dg  505 (667)
                      .+++.++| +++++....+.|.++|........ ..........+++|.   |+++.|+.++..+
T Consensus       216 gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          216 DFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             SEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            78999997 666666677899999965322222 122133568999998   8888887776543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.43  E-value=7.8e-05  Score=75.94  Aligned_cols=228  Identities=11%  Similarity=-0.040  Sum_probs=138.2

Q ss_pred             cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC--CeEEEEecCCCeEEE
Q 005956          310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVD  386 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D--g~v~iwdl~~~~~~~  386 (667)
                      .....++|.+++ .+++-..++.|..||.... ....+.....+..+++.+ +++++++....  ..|..+|..++++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            457789999988 5555557889999998753 444455556789999999 88866655432  247777878877654


Q ss_pred             eccc--CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc---ccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          387 WADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       387 ~~~~--~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~---~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      +...  ......++..+++..+++-..+|.|.++|..+............   ...........+  ++++..++++-..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            3322  22345555555554444444588888888765322111000000   000111234555  7876556666667


Q ss_pred             CCcEEEEECCc-c----eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc--ccccc-CccceeEEc
Q 005956          462 DSKLRILDGVD-V----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS--SKQKN-SVRSCEHFF  533 (667)
Q Consensus       462 dg~I~iwd~~~-~----~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~--~~~~~-~~~~~~~fs  533 (667)
                      .+.|.++|... .    ...+..   ......++++++|+++++....+.|.+++.. ++...  ..... ....+++|.
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             CCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence            78999999652 1    112211   1345678999999887777777899999976 43321  11211 334567888


Q ss_pred             ---cCCcEEEEecCC
Q 005956          534 ---SEGVSVAVQWPG  545 (667)
Q Consensus       534 ---~dg~~lav~w~~  545 (667)
                         +|+..|.++...
T Consensus       264 g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          264 QTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CSTTTTTEEEEEECT
T ss_pred             cccCCCCEEEEECCC
Confidence               887777776543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.43  E-value=3.8e-06  Score=86.08  Aligned_cols=202  Identities=16%  Similarity=0.056  Sum_probs=125.6

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE-EecccCCceEEE
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAI  397 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v  397 (667)
                      ++.|..++.++.|..+|.. ++....+. ....+.++...+ ++. ++.++.++.|..+|.. ++.. ........+.++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA  182 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence            6688888889999999998 77666654 333455566655 444 6667888999999998 6554 333334556777


Q ss_pred             EEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceee
Q 005956          398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHK  476 (667)
Q Consensus       398 ~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~  476 (667)
                      .+.++|. +.+++  +.+..|| .++..... ...      ....+.++...++|  .|.+++.++.|..+|... ....
T Consensus       183 ~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~-~~~------~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~~~~  249 (330)
T 3hxj_A          183 SIGKDGT-IYFGS--DKVYAIN-PDGTEKWN-FYA------GYWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTEKWR  249 (330)
T ss_dssp             EECTTCC-EEEES--SSEEEEC-TTSCEEEE-ECC------SSCCCSCCEECTTS--CEEEEETTTEEEEECTTSCEEEE
T ss_pred             EEcCCCE-EEEEe--CEEEEEC-CCCcEEEE-Ecc------CCcceeceEECCCC--eEEEEcCCCeEEEECCCCCEeEE
Confidence            7777776 44555  8889998 44443221 111      12457778888875  577777788888888542 2222


Q ss_pred             EEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEe
Q 005956          477 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       477 ~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~  542 (667)
                      +..  ....+..+.+.+++ .|..++.+|.|+.+|. +++...... .......+...++|.+.+..
T Consensus       250 ~~~--~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt  312 (330)
T 3hxj_A          250 FKT--GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGT  312 (330)
T ss_dssp             EEC--SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEEC
T ss_pred             eeC--CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEc
Confidence            222  23333445555555 5667777888999996 444333222 22333444555667655543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.43  E-value=1e-05  Score=92.10  Aligned_cols=220  Identities=10%  Similarity=-0.016  Sum_probs=135.8

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCC------CcEEEEEEeeCCCCEEEEEec------CCeEEEEecCCCeEEEe
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH------NYVTCVQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW  387 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~------~~V~~l~f~p~d~~~l~sgs~------Dg~v~iwdl~~~~~~~~  387 (667)
                      ++.|+.++.|+.|..+|..+++.+..+...      ..+...-..  .+..++.++.      ++.|+.||..+++.+-.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            458888899999999999999998888633      122211111  2345555543      69999999999987632


Q ss_pred             cccC---------------------------------CceEEEEEeeCCCEEEEEecCC-------------------cE
Q 005956          388 ADVR---------------------------------DVISAICYIPDGKGFIVGSITG-------------------TC  415 (667)
Q Consensus       388 ~~~~---------------------------------~~v~~v~~spdg~~l~~gs~dg-------------------~i  415 (667)
                      ....                                 .....++++|++..+++++.++                   .|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            2110                                 0113578899999999887764                   48


Q ss_pred             EEEEecCCcceeeeEeecccc---CcCCCCeEEEEEccCCC--eEEEEEeCCCcEEEEECCcceeeEEeCCC--------
Q 005956          416 HFYKASGNDLKLEKVDFHDRK---KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVIHKFKGLPK--------  482 (667)
Q Consensus       416 ~l~d~~~~~~~~~~~~~~~~~---~~~~~~I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~~~~~~~~~~~--------  482 (667)
                      ..+|..+++.... +....+.   ........-+....+|.  ..++.++.+|.|+++|..+..........        
T Consensus       286 ~AlD~~TG~~~W~-~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          286 VALDPDTGKYKWH-YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             EEECTTTCCEEEE-EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEECCCCCEEEE-EecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence            8999988876543 1111110   00011222233334542  57889999999999997654333221100        


Q ss_pred             ---CCCe------------------------EEEEEcCCCCEEEEEeCC-------------------------------
Q 005956          483 ---SGSQ------------------------MSASFTTTGKHIISIGDD-------------------------------  504 (667)
Q Consensus       483 ---~~~v------------------------~~v~~spdg~~l~sgs~D-------------------------------  504 (667)
                         ...+                        ..++|+|++.++++...+                               
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence               0001                        157889998888876432                               


Q ss_pred             ------------CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEe
Q 005956          505 ------------CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       505 ------------g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~  542 (667)
                                  |.|+.||+.+++..+............+..++..+.++
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g  494 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG  494 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE
T ss_pred             ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE
Confidence                        78999999999876665433322223455566655554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.41  E-value=0.00018  Score=70.94  Aligned_cols=207  Identities=12%  Similarity=0.208  Sum_probs=138.2

Q ss_pred             eeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeC--CCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          304 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      .+.+-...+..|+|.|++  +++....++.|...|.. ++.++.+..  ......|++.+ ++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence            344555689999999876  44457778899999998 888887753  35788889987 7777676656788999987


Q ss_pred             CCCeE---EEec-------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc--eeeeEeecc-ccCcCCCCeEEE
Q 005956          380 CEKRV---VDWA-------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--KLEKVDFHD-RKKTSGNKITGI  446 (667)
Q Consensus       380 ~~~~~---~~~~-------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~--~~~~~~~~~-~~~~~~~~I~~l  446 (667)
                      .....   +...       ..+.....++|+|.++.|+++.......+|.+.....  ......... ........+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65431   1111       2234468999999998888888877777777762100  011110000 001123457899


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcc-eeeEEeCCC-------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~-------~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ++.|..+.+++.+.....|.++|.... +..+.....       -...-.|+|.++|+ |+..++.+.++++.-.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence            999987677888888889999997643 333333211       13668999999997 5555788877777543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.41  E-value=0.0004  Score=80.69  Aligned_cols=266  Identities=10%  Similarity=0.105  Sum_probs=167.4

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      |.++...++|.+.+ |+.++-|..|+..+......                                           . 
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~-------------------------------------------~-  209 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKV-------------------------------------------I-  209 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEEC-------------------------------------------C-
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEe-------------------------------------------c-
Confidence            88888888886555 56654588888764221100                                           0 


Q ss_pred             eeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee--------CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      ...+...|.++...+++.|..++.++-|.+||..+++......        ....|.++...+ ++.+. .|+.+ -|.+
T Consensus       210 ~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~  286 (795)
T 4a2l_A          210 PILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNI  286 (795)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEE
T ss_pred             CCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhhe
Confidence            0012356888888778867777766569999998876554332        135799998887 66544 45555 5889


Q ss_pred             EecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956          377 WGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       377 wdl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      ||..+++......        ....|.++...++|. |.+|+.++-|..|+........... ...........|.++..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~l~~~~V~~i~~  364 (795)
T 4a2l_A          287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN-IPYKNSLSDNVVSCIVE  364 (795)
T ss_dssp             EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC-CTTSSSCSCSSEEEEEE
T ss_pred             EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC-CCCCCCCCCCeeEEEEE
Confidence            9998887665432        235699999988875 6678888888889876554322110 00001113457999998


Q ss_pred             ccCCCeEEEEEeCCCcEEEEECCcc-eeeEEeC-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956          449 SRDESQRIMITSEDSKLRILDGVDV-IHKFKGL-------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       449 sp~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~-------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                      .++|  .|.+|+.++-|..||.... ...+...       -....|.++...++|+.|..|+.++-|++||..++.....
T Consensus       365 d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          365 DKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             CTTS--CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             CCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence            8876  5667888878999997642 2233211       1245788999988988566677777799999887654322


Q ss_pred             cc-----ccCccceeEEccCCcEEEEe
Q 005956          521 KQ-----KNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       521 ~~-----~~~~~~~~~fs~dg~~lav~  542 (667)
                      ..     ....+.++...++|.+.+..
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence            11     11223344555566654443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.41  E-value=2e-05  Score=89.54  Aligned_cols=233  Identities=8%  Similarity=0.049  Sum_probs=129.3

Q ss_pred             eEEEEecCCC-eEEEEeC-CCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEe-cC-----CeEEEEecCC
Q 005956          312 VLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS-ID-----GKVRIWGVCE  381 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs-~D-----g~v~iwdl~~  381 (667)
                      ..++++..++ .++.|+. +..+.+||..+++-...-.  ....-.+++..+ ++++++.|+ .+     ..+.+||..+
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCC
Confidence            4456777777 6777774 5689999998876544322  122223455566 788999988 34     5699999988


Q ss_pred             CeEEEecc-----cCCceEEEEEeeCCCEEEEEecCC---------cEEEEEecCCcceeeeEeecccc---CcCCCCeE
Q 005956          382 KRVVDWAD-----VRDVISAICYIPDGKGFIVGSITG---------TCHFYKASGNDLKLEKVDFHDRK---KTSGNKIT  444 (667)
Q Consensus       382 ~~~~~~~~-----~~~~v~~v~~spdg~~l~~gs~dg---------~i~l~d~~~~~~~~~~~~~~~~~---~~~~~~I~  444 (667)
                      .+-.....     ....-....+..+++.++.|+.+|         .+..||..+...... .......   ......-.
T Consensus       324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~-~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS-AGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE-EEECEETTEECCCCBTCE
T ss_pred             CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec-CCccccccccCCCCCCCc
Confidence            77554311     000000011224556666666554         467888876653321 1111000   00011234


Q ss_pred             EEEEccCCCeEEEEEeCCC-----------cEEEEECCcceeeEEe--CCCCCC-eEEEEEcCCCCEEEEEeCC------
Q 005956          445 GIQFSRDESQRIMITSEDS-----------KLRILDGVDVIHKFKG--LPKSGS-QMSASFTTTGKHIISIGDD------  504 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg-----------~I~iwd~~~~~~~~~~--~~~~~~-v~~v~~spdg~~l~sgs~D------  504 (667)
                      ++.|...+.+++++|+.++           .|.+||.....-....  ...... -.+++..|+|+.++.|+.+      
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~  482 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  482 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence            4555443347788877532           5778886543222111  112222 2345667899999999864      


Q ss_pred             -----CcEEEEEcCCCCccccc---cccCccceeEEccCCcEEEEecCCC
Q 005956          505 -----CRVYVWNYDELCFPSSK---QKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       505 -----g~I~iWd~~~~~~~~~~---~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                           ..+.+||..+.+-....   ....--++..+.+||+++++.....
T Consensus       483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~  532 (656)
T 1k3i_A          483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC  532 (656)
T ss_dssp             CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred             CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCC
Confidence                 46899998775422211   1112223455678999999977543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.39  E-value=4.7e-05  Score=74.82  Aligned_cols=184  Identities=11%  Similarity=0.008  Sum_probs=121.7

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      ...+.|+ ++.+..+.+.+|.|+++|+.+++..                                             ..
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~---------------------------------------------~~   90 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV---------------------------------------------WM   90 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS---------------------------------------------EE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE---------------------------------------------eE
Confidence            4688888 4677888888999999999875432                                             11


Q ss_pred             eeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956          305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~  384 (667)
                      +.....--..+++..+..++..-.++.+.+||..+.+.+..+.....-+.+++   +++.|+.+..++.|.++|..+.++
T Consensus        91 ~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v  167 (268)
T 3nok_A           91 ERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFAL  167 (268)
T ss_dssp             EECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEE---ETTEEEEECSSSEEEEECTTTCCE
T ss_pred             ECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEec---CCCEEEEECCCCEEEEEcCCCCeE
Confidence            10111111235554444555566789999999999999999985554455554   567777777789999999999887


Q ss_pred             EEeccc---C---CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc-------cCcCCCCeEEEEEccC
Q 005956          385 VDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKTSGNKITGIQFSRD  451 (667)
Q Consensus       385 ~~~~~~---~---~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~-------~~~~~~~I~~l~~sp~  451 (667)
                      +.....   .   ..++.+.|. +|+.++..-.+..|.+.|..+++... .+.+.+-       ......-.++|++.|+
T Consensus       168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~-~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG-VIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE-EEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE-EEECCCCcccccccccCcCCceEEEEEcCC
Confidence            653322   1   245667776 77555444467899999998887643 3443321       1112346789999998


Q ss_pred             CCeEEEEE
Q 005956          452 ESQRIMIT  459 (667)
Q Consensus       452 g~~~l~~~  459 (667)
                      +..++++|
T Consensus       246 ~~rlfVTG  253 (268)
T 3nok_A          246 SGRIFMTG  253 (268)
T ss_dssp             TCCEEEEE
T ss_pred             CCEEEEeC
Confidence            75555554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.38  E-value=1.2e-05  Score=82.41  Aligned_cols=186  Identities=14%  Similarity=0.039  Sum_probs=118.2

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE-Eec
Q 005956          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWA  388 (667)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~-~~~  388 (667)
                      .+.++...+++.|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.++ .++  +.|..+| .+++.. ...
T Consensus       138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~  211 (330)
T 3hxj_A          138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFY  211 (330)
T ss_dssp             CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEEC
T ss_pred             eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEc
Confidence            3455566667778888888999999999 77776665 344566667765 56544 444  7899999 565544 344


Q ss_pred             ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                      .....+.++...++| .+.+++.++.+..+|... ... ......      ...+..+.+.+++  .|.+++.++.|..+
T Consensus       212 ~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~g-~~~-~~~~~~------~~~~~~~~~~~~g--~l~v~t~~ggl~~~  280 (330)
T 3hxj_A          212 AGYWTVTRPAISEDG-TIYVTSLDGHLYAINPDG-TEK-WRFKTG------KRIESSPVIGNTD--TIYFGSYDGHLYAI  280 (330)
T ss_dssp             CSSCCCSCCEECTTS-CEEEEETTTEEEEECTTS-CEE-EEEECS------SCCCSCCEECTTS--CEEEECTTCEEEEE
T ss_pred             cCCcceeceEECCCC-eEEEEcCCCeEEEECCCC-CEe-EEeeCC------CCccccceEcCCC--eEEEecCCCCEEEE
Confidence            444567888888777 566677788888887433 222 222211      1223345555554  67788888899999


Q ss_pred             ECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          469 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       469 d~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      |.. .............+.++...++|. |..++.+|.+++...+..
T Consensus       281 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          281 NPD-GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             CCC-CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            963 222222222345566777777776 556788999998876544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.35  E-value=3.4e-05  Score=88.06  Aligned_cols=152  Identities=11%  Similarity=0.068  Sum_probs=95.4

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCC------CcEEEEEEeeCCCCEEEEEe------cCCeEEEEecCCCeEEEe
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH------NYVTCVQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDW  387 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~------~~V~~l~f~p~d~~~l~sgs------~Dg~v~iwdl~~~~~~~~  387 (667)
                      ++.++.++.|+.|..+|..+|+.+..+...      ..+.+.-.-. ++ .++.++      .++.|+.||..+++.+-.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            458888999999999999999998877532      1121111111 34 444443      368999999999987632


Q ss_pred             ccc--------------------------------CCceEEEEEeeCCCEEEEEecCCc-------------------EE
Q 005956          388 ADV--------------------------------RDVISAICYIPDGKGFIVGSITGT-------------------CH  416 (667)
Q Consensus       388 ~~~--------------------------------~~~v~~v~~spdg~~l~~gs~dg~-------------------i~  416 (667)
                      ...                                ......++++|++..+++++.++.                   |.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            210                                001135788998899999988764                   99


Q ss_pred             EEEecCCcceeeeEeecccc---CcCCCCeEEEEEccCCC--eEEEEEeCCCcEEEEECCcce
Q 005956          417 FYKASGNDLKLEKVDFHDRK---KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVI  474 (667)
Q Consensus       417 l~d~~~~~~~~~~~~~~~~~---~~~~~~I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~~~  474 (667)
                      .+|..+++..... ....+.   .....++.......+|.  ..++.++.+|.++++|..+..
T Consensus       279 AlD~~TG~~~W~~-~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          279 AVNADTGEYVWHY-QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             EEETTTCCEEEEE-ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             EEEccCCceeEee-ecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence            9999988876432 111110   00112222222223431  378889999999999976543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.34  E-value=0.00027  Score=72.41  Aligned_cols=192  Identities=11%  Similarity=0.025  Sum_probs=123.6

Q ss_pred             cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-C-------------------CCcEEEEEEeeCCCCEEEEE
Q 005956          310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-H-------------------HNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h-------------------~~~V~~l~f~p~d~~~l~sg  368 (667)
                      ....+++|.+++ .++++..++.|..|+..+++...... .                   ...+.++++.+ ++..|+.+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence            456778899988 58888899999999988765432211 0                   12578899986 34556666


Q ss_pred             ecCCeEEEEecCCCeEEEecc-----cCCceEEEEEee-CCCEEEEEec-----------------CCcEEEEEecCCcc
Q 005956          369 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIP-DGKGFIVGSI-----------------TGTCHFYKASGNDL  425 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~~~~-----~~~~v~~v~~sp-dg~~l~~gs~-----------------dg~i~l~d~~~~~~  425 (667)
                      ...+.|..+|..++.+..+..     ....+..+++.+ +|+.+++-..                 +|.+..||..+...
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            556668899987765433221     123478899999 9976665432                 36677888765543


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      ....-.+        .....++++|+|..++++-...+.|.+|++..    ....+..  ..+ ...++++++|++.++.
T Consensus       178 ~~~~~~~--------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          178 TLLLKEL--------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EEEEEEE--------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred             EEeccCC--------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence            2211111        23467999999743445556678999999763    1222222  123 7889999999877766


Q ss_pred             eC----------CCcEEEEEcC
Q 005956          502 GD----------DCRVYVWNYD  513 (667)
Q Consensus       502 s~----------Dg~I~iWd~~  513 (667)
                      ..          .+.|..+|.+
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT
T ss_pred             cCcccccccCCCccEEEEECCC
Confidence            44          4567777764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.33  E-value=6.6e-05  Score=73.73  Aligned_cols=185  Identities=10%  Similarity=0.040  Sum_probs=123.8

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEE--EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe
Q 005956          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT--CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  387 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~--~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~  387 (667)
                      .-...|.|+.+.++.+.+.+|.|+++|+.+++.+..+ ......  .+++.  .+.+++..-.++.+.+||..+.+++..
T Consensus        55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            3457888885337778888899999999999988877 444443  35553  355666666789999999999998865


Q ss_pred             cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956          388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  467 (667)
Q Consensus       388 ~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i  467 (667)
                      ......-..++  +|++.|+++..++.|.++|..+.+.... +..... ...-..++.+.|. +| ..++..-.++.|.+
T Consensus       132 i~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-I~V~~~-g~~v~~lNeLe~~-dG-~lyanvw~s~~I~v  205 (268)
T 3nok_A          132 TRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA-VQVKLR-GQPVELINELECA-NG-VIYANIWHSSDVLE  205 (268)
T ss_dssp             EECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTCSEEEE
T ss_pred             EeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE-EEeCCC-CcccccccccEEe-CC-EEEEEECCCCeEEE
Confidence            44433333444  6788888888889999999988776543 222211 1112345777877 54 55555546789999


Q ss_pred             EECCcc--eeeEEeC-----------CCCCCeEEEEEcCCCCEEEEEeC
Q 005956          468 LDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD  503 (667)
Q Consensus       468 wd~~~~--~~~~~~~-----------~~~~~v~~v~~spdg~~l~sgs~  503 (667)
                      .|..+.  ...+...           ......+.++++|+++.|+..+.
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            997643  3333321           12346789999998766665553

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.32  E-value=0.00019  Score=69.77  Aligned_cols=195  Identities=7%  Similarity=-0.009  Sum_probs=126.5

Q ss_pred             ceeeeccc--cceEEEEecCCCeEEEEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          302 LQELHGHK--GDVLDLAWSNSNYLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       302 ~~~l~gh~--~~V~~l~~s~~~~l~s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      +.++ .|.  .-...|.|+++.++.+.+.+|  .|+.+|+.+++.+..+............+.++.++...-.++.+.+|
T Consensus        12 ~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            3444 454  457789998733666666654  89999999999999887554443333333245555556678999999


Q ss_pred             ecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       378 dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      |..+.+++........-..+  .++++.|+++..++.|.++|..+.+.... +..... ...-..++.+.+. +| ..++
T Consensus        91 D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~-I~V~~~-g~~~~~lNeLe~~-~G-~lya  164 (243)
T 3mbr_X           91 DLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGS-IKVTAG-GRPLDNLNELEWV-NG-ELLA  164 (243)
T ss_dssp             ETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEE
T ss_pred             ECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEE-EEEccC-CcccccceeeEEe-CC-EEEE
Confidence            99999988655444433344  46788888877789999999988776543 222211 0111345667766 43 5554


Q ss_pred             EEeCCCcEEEEECCcc--eeeEEeC-----------CCCCCeEEEEEcCCCCEEEEEeC
Q 005956          458 ITSEDSKLRILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD  503 (667)
Q Consensus       458 ~~s~dg~I~iwd~~~~--~~~~~~~-----------~~~~~v~~v~~spdg~~l~sgs~  503 (667)
                      ..-.+..|.+.|..+.  ...+...           ......+.++++|+++.|+..+.
T Consensus       165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            4546779999997743  3333321           12245689999998877777664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.31  E-value=0.00062  Score=67.51  Aligned_cols=218  Identities=7%  Similarity=-0.074  Sum_probs=131.1

Q ss_pred             ccEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          223 GCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latg-s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      ..+..++|++++..|+.+ ..++.|.+++......                                             
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------------------------------------------   70 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------------------------------------------   70 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------------------------------------
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------------------------------------------
Confidence            357899999976655544 4567899988764211                                             


Q ss_pred             ceeeeccccceEEEEecCCC-e-EEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec---CCeEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---DGKVR  375 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~-l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~---Dg~v~  375 (667)
                      ...+.........+++.+++ . +++-...+.|.++++.......... .......++++| ++..|+.+..   .+.|.
T Consensus        71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A           71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEE
T ss_pred             EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEE
Confidence            01111112356889999864 4 4455567899999987543333332 225678999999 6555555543   36888


Q ss_pred             EEecCCCeEEEec-ccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956          376 IWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  453 (667)
Q Consensus       376 iwdl~~~~~~~~~-~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~  453 (667)
                      .+++.......+. ..-.....++++|++..|.++. ..+.|..+|..+..... .+  ..     ......++..  +.
T Consensus       150 ~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~-~~--~~-----~~~P~gi~~d--~~  219 (267)
T 1npe_A          150 TSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-VL--EG-----LQYPFAVTSY--GK  219 (267)
T ss_dssp             EEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-EE--EC-----CCSEEEEEEE--TT
T ss_pred             EEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE-Ee--cC-----CCCceEEEEe--CC
Confidence            8888754332221 2234688999999877666554 55789999987533211 11  11     1334566654  33


Q ss_pred             eEEEEEeCCCcEEEEECCcceeeEEeCCC-CCCeEEEEEcCCCC
Q 005956          454 QRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGK  496 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~spdg~  496 (667)
                      .++++....+.|.++|............. ......+++.|++.
T Consensus       220 ~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          220 NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            55555556789999998644332222212 22356777777764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.29  E-value=0.0001  Score=72.46  Aligned_cols=194  Identities=13%  Similarity=0.119  Sum_probs=122.5

Q ss_pred             ceeecccccc--EEEEEEcCCCCEEEEEECCC--cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          215 SQEIQAHKGC--IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       215 ~~~l~~H~~~--I~~v~fspdg~~Latgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      .+++ .|...  ...+.|+ ++.+..+++.+|  .|+++|+.+++....                               
T Consensus        34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~-------------------------------   80 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ-------------------------------   80 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE-------------------------------
T ss_pred             EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE-------------------------------
Confidence            3444 34433  4789998 777778888776  899999987544321                               


Q ss_pred             CCCcccccCCcceeeecccc-ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe
Q 005956          291 PDEVFQIEESPLQELHGHKG-DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~-~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                                    +.-... --..++...+...+..-.++.+.+||..+.+.+..+.....-+.++  + +++.|+...
T Consensus        81 --------------~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L~~Sd  143 (262)
T 3nol_A           81 --------------IELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYLIMSD  143 (262)
T ss_dssp             --------------EECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCEEECC
T ss_pred             --------------EecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEEEEEC
Confidence                          111111 1122343333244445568899999999999999998554334444  4 566666666


Q ss_pred             cCCeEEEEecCCCeEEEeccc---C---CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc------C
Q 005956          370 IDGKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------K  437 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~~~~~---~---~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~------~  437 (667)
                      .++.|.++|..+.+++.....   .   ..++.+.|. +|+.++..-.++.|.+.|..+++... .+.+.+-.      .
T Consensus       144 Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~-~Id~~~L~~~~~~~~  221 (262)
T 3nol_A          144 GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG-IIDLNGILAEAGPLP  221 (262)
T ss_dssp             SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE-EEECTTGGGGSCSCC
T ss_pred             CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE-EEECCcCcccccccc
Confidence            678899999999887653222   1   335567775 77655444468899999998887643 34443211      1


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeC
Q 005956          438 TSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       438 ~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      ....-.+.|+|+|++. .|++++.
T Consensus       222 ~~~~vlNGIA~dp~~~-~lfVTGK  244 (262)
T 3nol_A          222 SPIDVLNGIAWDKEHH-RLFVTGK  244 (262)
T ss_dssp             SSCCCEEEEEEETTTT-EEEEEET
T ss_pred             CcCCceEEEEEcCCCC-EEEEECC
Confidence            1234678999999864 4555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.28  E-value=0.00098  Score=77.37  Aligned_cols=226  Identities=12%  Similarity=0.142  Sum_probs=144.4

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee--------CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~  381 (667)
                      ..|.++...++|.|..|+.+ -|.+||..++.......        ....|.++...+ ++. |..|+.++-|..|+..+
T Consensus       263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIR  339 (795)
T ss_dssp             SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGG
T ss_pred             CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCc
Confidence            56899998888877777766 58999998877654432        235799998887 555 55677777799998876


Q ss_pred             CeEEEecc-------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc-CcCCCCeEEEEEccCCC
Q 005956          382 KRVVDWAD-------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITGIQFSRDES  453 (667)
Q Consensus       382 ~~~~~~~~-------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~-~~~~~~I~~l~~sp~g~  453 (667)
                      +.......       ....|.+++..++|+ |.+|+.++-+..|+..+.............. ......|.++...++| 
T Consensus       340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-  417 (795)
T 4a2l_A          340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK-  417 (795)
T ss_dssp             GSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT-
T ss_pred             ccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC-
Confidence            65443221       235689999888775 6668888789999887655432111000000 1123678999988875 


Q ss_pred             eEEEEEeCCCcEEEEECCcc-eeeEEeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc------
Q 005956          454 QRIMITSEDSKLRILDGVDV-IHKFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK------  523 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~-~~~~~~~---~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~------  523 (667)
                      ..|.+|+.++-|.+||.... ...+...   .....|.++...++|.+.+...  +-|++|+..++........      
T Consensus       418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~  495 (795)
T 4a2l_A          418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPV  495 (795)
T ss_dssp             TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred             CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEcccccccccc
Confidence            43777888778999997643 2222210   1345788999988888666554  4589999887654322111      


Q ss_pred             -cCccceeEEccCCcEEEEe
Q 005956          524 -NSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       524 -~~~~~~~~fs~dg~~lav~  542 (667)
                       ...+.++...++|.+.+..
T Consensus       496 ~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          496 VSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             CCCCEEEEEECTTCCEEEEE
T ss_pred             CCceEEEEEECCCCCEEEEe
Confidence             1223445666677655443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.26  E-value=0.00097  Score=69.26  Aligned_cols=199  Identities=6%  Similarity=-0.069  Sum_probs=125.7

Q ss_pred             cceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956          310 GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~  386 (667)
                      ..+..++|.+.+ .| ++-...+.|..+++........+. .......+++.+.+++++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            347889998654 44 455567889999998765444443 234567888987455666666667889999988754333


Q ss_pred             ec-ccCCceEEEEEeeCCCEEEEEe-cC-CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          387 WA-DVRDVISAICYIPDGKGFIVGS-IT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       387 ~~-~~~~~v~~v~~spdg~~l~~gs-~d-g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                      .. ..-.....++++|.+..|.... .. +.|..+++........ +  .    ........++++|+++.++++-...+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~--~----~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-A--D----THLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES-C--C----SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE-E--E----CCCCCcceEEEeCCCCEEEEEECCCC
Confidence            22 3335678999999666555544 34 6788888765433211 0  0    11245789999987656666666778


Q ss_pred             cEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          464 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       464 ~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      .|..+|.... ...+.. ........+++. .+...++-...+.|..++..++..
T Consensus       226 ~I~~~~~dG~~~~~~~~-~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          226 VIERANLDGSHRKAVIS-QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             EEEEEETTSCSCEEEEC-SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEEeCCCCceEEEEe-CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence            8999997632 222221 234566778883 444444545567888888555543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.24  E-value=0.00011  Score=81.93  Aligned_cols=222  Identities=10%  Similarity=-0.016  Sum_probs=130.7

Q ss_pred             CCeEEEEeC------CCcEEEEecCCCeEeEEeeCCCcE---------------------------------------EE
Q 005956          320 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC  354 (667)
Q Consensus       320 ~~~l~s~s~------Dg~I~iWd~~~~~~~~~~~h~~~V---------------------------------------~~  354 (667)
                      ++.++.++.      ++.|..+|..+++.+..+......                                       ..
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~  239 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW  239 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence            455555554      789999999999998877532211                                       13


Q ss_pred             EEEeeCCCCEEEEEecC----------------CeEEEEecCCCeEEEecc---cC-------CceEEEEEeeCCC---E
Q 005956          355 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---G  405 (667)
Q Consensus       355 l~f~p~d~~~l~sgs~D----------------g~v~iwdl~~~~~~~~~~---~~-------~~v~~v~~spdg~---~  405 (667)
                      +++.+ ....++.+..+                +.|..+|..+++.+-...   +.       ....-+...++|+   .
T Consensus       240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence            55666 55566666532                369999999998764222   11       1112223335774   5


Q ss_pred             EEEEecCCcEEEEEecCCcceeeeEeecccc------C-cCCCCe--------------------------EEEEEccCC
Q 005956          406 FIVGSITGTCHFYKASGNDLKLEKVDFHDRK------K-TSGNKI--------------------------TGIQFSRDE  452 (667)
Q Consensus       406 l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~------~-~~~~~I--------------------------~~l~~sp~g  452 (667)
                      +++++.+|.+.++|..+++.... ..+....      . ....++                          ..++++|+.
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~-~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVA-EKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEE-EESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEee-ecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            77888999999999988876543 1111100      0 000111                          246777775


Q ss_pred             CeEEEEEe-------------------------------------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC
Q 005956          453 SQRIMITS-------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  495 (667)
Q Consensus       453 ~~~l~~~s-------------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg  495 (667)
                       .++++..                                     .++.|..||..+.....+.. ....+....+...+
T Consensus       398 -g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~~~~t~g  475 (571)
T 2ad6_A          398 -RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKG  475 (571)
T ss_dssp             -TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETT
T ss_pred             -CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccceeEEECC
Confidence             3444432                                     35789999987654444332 11222222223346


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCccccccccC--ccceeEEccCCcEEEEecCC
Q 005956          496 KHIISIGDDCRVYVWNYDELCFPSSKQKNS--VRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       496 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~--~~~~~~fs~dg~~lav~w~~  545 (667)
                      ..|+.++.||.|+.||..+++.........  ....+.|..+|+.++....+
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECC
Confidence            678889999999999999998866543322  22334566788755554433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.23  E-value=4.7e-05  Score=86.59  Aligned_cols=211  Identities=13%  Similarity=0.087  Sum_probs=130.8

Q ss_pred             CCcEEEEecCCCeEeEEeeCC--Cc------------------------------EEEEEEeeCCCCEEEEEecCC----
Q 005956          329 DKTVRMWQVGCNQCLNVFDHH--NY------------------------------VTCVQFNPIDDNYFISGSIDG----  372 (667)
Q Consensus       329 Dg~I~iWd~~~~~~~~~~~h~--~~------------------------------V~~l~f~p~d~~~l~sgs~Dg----  372 (667)
                      ++.|..+|..+++.+..+...  .+                              ...+++.| ...+++.++.++    
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~  255 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN  255 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence            589999999999998877421  00                              11367887 677888887766    


Q ss_pred             ---------------eEEEEecCCCeEEEecc---cC-------CceEEEEEeeCCC---EEEEEecCCcEEEEEecCCc
Q 005956          373 ---------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVGSITGTCHFYKASGND  424 (667)
Q Consensus       373 ---------------~v~iwdl~~~~~~~~~~---~~-------~~v~~v~~spdg~---~l~~gs~dg~i~l~d~~~~~  424 (667)
                                     .|..+|..+++.+-...   +.       ..+....+..+|+   .+++++.+|.++++|..+++
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence                           39999999999774222   11       2233334445775   68889999999999999888


Q ss_pred             ceeeeEeecc-----ccC-cCCC------------------------CeEEEEEccCCCeEEEEE---------------
Q 005956          425 LKLEKVDFHD-----RKK-TSGN------------------------KITGIQFSRDESQRIMIT---------------  459 (667)
Q Consensus       425 ~~~~~~~~~~-----~~~-~~~~------------------------~I~~l~~sp~g~~~l~~~---------------  459 (667)
                      +... ..+..     ... ....                        .-..++++|+.+ ++++.               
T Consensus       336 ~l~~-~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~  413 (668)
T 1kv9_A          336 LISA-EKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDF  413 (668)
T ss_dssp             EEEE-EESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGC
T ss_pred             Eecc-ccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeecccc
Confidence            7522 10000     000 0000                        011267777643 33321               


Q ss_pred             ---------------------eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956          460 ---------------------SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       460 ---------------------s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                                           ..+|.|..||..+.....+.. .........+...+.+|+.++.|+.|++||..+++..
T Consensus       414 ~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          414 VTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             CCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc-CCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence                                 123789999988766555432 1222333344456789999999999999999999876


Q ss_pred             cccccc--CccceeEEccCCc-EEEEec
Q 005956          519 SSKQKN--SVRSCEHFFSEGV-SVAVQW  543 (667)
Q Consensus       519 ~~~~~~--~~~~~~~fs~dg~-~lav~w  543 (667)
                      ......  ....-+.+..+|+ +++++-
T Consensus       493 ~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          493 WQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eEecCCCCcccCceEEEECCEEEEEEEe
Confidence            554322  2223355667787 555543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.22  E-value=0.00038  Score=67.68  Aligned_cols=187  Identities=12%  Similarity=0.078  Sum_probs=119.0

Q ss_pred             ccEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          223 GCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      .-...+.|++ +.+..+.+.+|  .|+++|+.+++.....                                        
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~----------------------------------------   59 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA----------------------------------------   59 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE----------------------------------------
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE----------------------------------------
Confidence            3466899986 66677777654  8999999985443211                                        


Q ss_pred             cceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                         .+..+. --..++...+..+...-.++.+.+||..+.+.+..+.....-+.++  + ++..|+.+..++.|.++|..
T Consensus        60 ---~l~~~~-fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~~L~vSdgs~~l~~iDp~  132 (243)
T 3mbr_X           60 ---EVPPPY-FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDSHLYMSDGTAVIRKLDPD  132 (243)
T ss_dssp             ---ECCTTC-CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSSCEEEECSSSEEEEECTT
T ss_pred             ---eCCCCc-ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCCEEEEECCCCeEEEEeCC
Confidence               000110 0122333333344455678999999999999999998655445555  4 56666666678899999999


Q ss_pred             CCeEEEecccC------CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC-------cCCCCeEEEE
Q 005956          381 EKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKITGIQ  447 (667)
Q Consensus       381 ~~~~~~~~~~~------~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~-------~~~~~I~~l~  447 (667)
                      +.+++......      ..++.+.+. +|+.++..-.+..|.+.|..+++... .+.+.+-..       ....-.++|+
T Consensus       133 t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~-~idl~~l~~~~~~~~~~~~~vlNGIA  210 (243)
T 3mbr_X          133 TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA-WIDLQALVPDADALTDSTNDVLNGIA  210 (243)
T ss_dssp             TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE-EEECGGGSTTTTSCCCTTSSCEEEEE
T ss_pred             CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE-EEECCcCccccccccCCcCCceEEEE
Confidence            98776533221      345667765 66655444467899999999887643 344332211       1234678999


Q ss_pred             EccCCCeEEEEE
Q 005956          448 FSRDESQRIMIT  459 (667)
Q Consensus       448 ~sp~g~~~l~~~  459 (667)
                      +.|++..++++|
T Consensus       211 ~d~~~~~lfVTG  222 (243)
T 3mbr_X          211 FDAEHDRLFVTG  222 (243)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EcCCCCEEEEEC
Confidence            999864444444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.21  E-value=0.00089  Score=70.61  Aligned_cols=199  Identities=6%  Similarity=-0.071  Sum_probs=126.4

Q ss_pred             cceEEEEecCC-Ce-EEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956          310 GDVLDLAWSNS-NY-LLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (667)
Q Consensus       310 ~~V~~l~~s~~-~~-l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~  386 (667)
                      ..+..++|.+. +. +++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            45788999964 44 4455567889999998766544443 233556788887455566666667889999987654333


Q ss_pred             e-cccCCceEEEEEeeCCCEEEEEec-C-CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          387 W-ADVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       387 ~-~~~~~~v~~v~~spdg~~l~~gs~-d-g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                      . .........++++|.+..|+.... . +.|..+++.......  +...     .......|+++|+++.++++-+..+
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~-----~~~~PnGlavd~~~~~lY~aD~~~~  268 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IADT-----HLFWPNGLTIDYAGRRMYWVDAKHH  268 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECS-----SCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--EEEC-----CCCCeeeEEEeCCCCEEEEEECCCC
Confidence            2 223356889999997666665543 3 678888876543321  1111     1245789999987656666666778


Q ss_pred             cEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          464 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       464 ~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      .|..+|.... ...+.. ........+++ ..+..+++-...+.|..++..++..
T Consensus       269 ~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          269 VIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             EEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence            8999987532 222222 23456678888 3444555555677888888655543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.14  E-value=0.0007  Score=72.50  Aligned_cols=241  Identities=12%  Similarity=0.104  Sum_probs=136.2

Q ss_pred             EEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          225 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       225 I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      -..|+++| ++..|..+...+.|+.+|.....                                              +.
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~----------------------------------------------v~  172 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY----------------------------------------------VS  172 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTE----------------------------------------------EE
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCE----------------------------------------------EE
Confidence            46789998 45556666555778888876421                                              22


Q ss_pred             eeeccccceEEEEecCCC-eEEEEeCC-C----cEEEEecCCCeEe--EEeeCCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  375 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~D-g----~I~iWd~~~~~~~--~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~  375 (667)
                      .+.........|+|++++ +|+.+... +    .+.+.+.. +...  ..+........++++|.++.++++-..++.|.
T Consensus       173 ~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~  251 (430)
T 3tc9_A          173 TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVF  251 (430)
T ss_dssp             EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEE
Confidence            222234557889999988 46666542 1    23334432 2211  22322334567789985566666666778999


Q ss_pred             EEecCCCeEEEec--ccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCccee---eeEeec-ccc--------CcCC
Q 005956          376 IWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKL---EKVDFH-DRK--------KTSG  440 (667)
Q Consensus       376 iwdl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~---~~~~~~-~~~--------~~~~  440 (667)
                      .++..++....+.  ........++|+|+|++|+++ ...+.|..++........   ..+.-. +..        ....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~  331 (430)
T 3tc9_A          252 RYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM  331 (430)
T ss_dssp             EEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB
T ss_pred             EEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe
Confidence            9999887653322  223457899999999955554 467789998876431111   011110 000        0001


Q ss_pred             CCeE-EEEEc--------cCCCeEEEEEeCCCcEEEEECCcceeeEEeCC----------------CCCCeEEEEEcCC-
Q 005956          441 NKIT-GIQFS--------RDESQRIMITSEDSKLRILDGVDVIHKFKGLP----------------KSGSQMSASFTTT-  494 (667)
Q Consensus       441 ~~I~-~l~~s--------p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----------------~~~~v~~v~~spd-  494 (667)
                      ..-. .+...        ++| .++++-...+.|+.++..-.+..+.+..                .-.....++++|+ 
T Consensus       332 ~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~  410 (430)
T 3tc9_A          332 HAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEER  410 (430)
T ss_dssp             SSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTT
T ss_pred             CCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCC
Confidence            1223 45443        232 4444445567888888543333333320                0125789999995 


Q ss_pred             CCEEEEEeCCCcEEEEEcC
Q 005956          495 GKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       495 g~~l~sgs~Dg~I~iWd~~  513 (667)
                      +.++++-..+..|+.++++
T Consensus       411 g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          411 ECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TEEEEEEGGGTEEEEEEEC
T ss_pred             CEEEEEECCCCeEEEEccC
Confidence            5444444456778887764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.11  E-value=0.00029  Score=81.30  Aligned_cols=241  Identities=8%  Similarity=0.031  Sum_probs=131.3

Q ss_pred             cccc-cEEEEEEc-CCCCEEEEEEC-CC----cEEEEEcCCC-ceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          220 AHKG-CIWTLKFS-PDGRYLASGGE-DG----VVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       220 ~H~~-~I~~v~fs-pdg~~Latgs~-Dg----~I~vWdv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      +|.- .+...+|| |||++||-+.. +|    .|+++|+.++ ...                                  
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----------------------------------  215 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----------------------------------  215 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------------------------------
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------------------------------
Confidence            4443 68889999 99998886543 22    5999998863 210                                  


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCC-----CcEEEEecCCCeE--eEEee--CCCcEEEEEEeeCC
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQC--LNVFD--HHNYVTCVQFNPID  361 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D-----g~I~iWd~~~~~~--~~~~~--h~~~V~~l~f~p~d  361 (667)
                                ...+.   .....++|+||+ .|+....|     ..|.++++.++..  ...+.  .......+.|+| |
T Consensus       216 ----------~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-D  281 (751)
T 2xe4_A          216 ----------ADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-D  281 (751)
T ss_dssp             ----------CCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-T
T ss_pred             ----------Ccccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-C
Confidence                      00011   113468899998 66655554     3688889887642  23332  334567889999 9


Q ss_pred             CCEEEEEec---CCeEEEEecCCC--eE--EEecc-cCCceEEEEEeeCCCEEEEEecC---C--cEEEEEecCCcceee
Q 005956          362 DNYFISGSI---DGKVRIWGVCEK--RV--VDWAD-VRDVISAICYIPDGKGFIVGSIT---G--TCHFYKASGNDLKLE  428 (667)
Q Consensus       362 ~~~l~sgs~---Dg~v~iwdl~~~--~~--~~~~~-~~~~v~~v~~spdg~~l~~gs~d---g--~i~l~d~~~~~~~~~  428 (667)
                      +++|+..+.   ...|+++|+.++  +.  ..+.. .......+.|+ +|+.|+..+..   +  .|..+++.+... ..
T Consensus       282 g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~  359 (751)
T 2xe4_A          282 TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSD-WS  359 (751)
T ss_dssp             SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTC-CC
T ss_pred             CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCccc-ce
Confidence            998877663   346888999875  33  33332 23334444443 36666655443   3  455555543111 11


Q ss_pred             e-EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEEC-------Ccc--eeeEEeCCCCCCeEEEEE----c
Q 005956          429 K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDG-------VDV--IHKFKGLPKSGSQMSASF----T  492 (667)
Q Consensus       429 ~-~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~--I~iwd~-------~~~--~~~~~~~~~~~~v~~v~~----s  492 (667)
                      . +..+.    ....+..+.+.  +..++++...++.  |+++|+       ...  ...+.. .....+..+.+    +
T Consensus       360 ~~li~~~----~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l-~~~~~~~~~~~~~~~~  432 (751)
T 2xe4_A          360 HVLVDHS----EDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVM-EEPIFTVHLVESQMLE  432 (751)
T ss_dssp             CEEECCC----SSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCC-CCSSCEEEECGGGCCC
T ss_pred             eeEECCC----CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECC-CCceeEEEeccCcccC
Confidence            1 11111    01134555554  3467777777775  555664       221  222221 11222333322    3


Q ss_pred             CCCC-EEEEEeCC---CcEEEEEcCCCCc
Q 005956          493 TTGK-HIISIGDD---CRVYVWNYDELCF  517 (667)
Q Consensus       493 pdg~-~l~sgs~D---g~I~iWd~~~~~~  517 (667)
                      +++. ++++.+..   ..|+.+|+.+++.
T Consensus       433 ~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          433 YEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             TTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             CCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            4654 44444432   4688888877653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.09  E-value=0.00081  Score=72.07  Aligned_cols=204  Identities=9%  Similarity=0.038  Sum_probs=114.1

Q ss_pred             ccceEEEEecCCCeEEEEeCC----C-cEEEEecCCCeE-eEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          309 KGDVLDLAWSNSNYLLSCSMD----K-TVRMWQVGCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~D----g-~I~iWd~~~~~~-~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      ......++|++++.|+.+...    . .+...+...+.. ...+..-.....++++|.++.++++-..++.|+.+|..++
T Consensus       181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g  260 (433)
T 4hw6_A          181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG  260 (433)
T ss_dssp             CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred             CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence            345789999999844444332    1 133333222111 1122223345667888855666556556788999999877


Q ss_pred             eE-EEec--ccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecC--Cccee-eeEeec-cc--------cCcCCCCeEEE
Q 005956          383 RV-VDWA--DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKL-EKVDFH-DR--------KKTSGNKITGI  446 (667)
Q Consensus       383 ~~-~~~~--~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~--~~~~~-~~~~~~-~~--------~~~~~~~I~~l  446 (667)
                      .. ..+.  ........++|+|+|+.|+++. ..+.|+.++...  ..+.. ..+.-. +.        ..........+
T Consensus       261 ~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gi  340 (433)
T 4hw6_A          261 TLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQG  340 (433)
T ss_dssp             CEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEE
T ss_pred             eEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccE
Confidence            65 2221  1222345699999999665554 567888888753  22210 111110 00        00112346678


Q ss_pred             EE---------ccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCC----------------CCCeEEEEEc-CCCCEEEE
Q 005956          447 QF---------SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK----------------SGSQMSASFT-TTGKHIIS  500 (667)
Q Consensus       447 ~~---------sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~----------------~~~v~~v~~s-pdg~~l~s  500 (667)
                      ++         .++| .++++-...+.|+.++..-.+..+.+...                -.....++++ ++|.++++
T Consensus       341 av~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa  419 (433)
T 4hw6_A          341 IFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG  419 (433)
T ss_dssp             EEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred             EEEccccccccCCCC-cEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence            88         5554 55555566778999986443444433211                1346789999 56655555


Q ss_pred             EeCCCcEEEEEcC
Q 005956          501 IGDDCRVYVWNYD  513 (667)
Q Consensus       501 gs~Dg~I~iWd~~  513 (667)
                      =..++.|+..+++
T Consensus       420 D~~n~rIr~i~~e  432 (433)
T 4hw6_A          420 DCDNHRVRKIAPE  432 (433)
T ss_dssp             EGGGTEEEEEEEC
T ss_pred             eCCCCEEEEEecC
Confidence            5566788887764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.09  E-value=0.0057  Score=62.38  Aligned_cols=199  Identities=11%  Similarity=-0.038  Sum_probs=123.5

Q ss_pred             cceEEEEecCCC-e-EEEEeCCCcEEEEecCC----CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          310 GDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       310 ~~V~~l~~s~~~-~-l~s~s~Dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      ..+..++|.+.+ . +++-...+.|..+++..    ......+. .-.....+++.+.+++++++-...+.|.++++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            457889999754 4 44555678999999876    22222232 22456788998735555566567789999999876


Q ss_pred             eEEEecc-cCCceEEEEEeeCCCEEEEEecC--CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          383 RVVDWAD-VRDVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       383 ~~~~~~~-~~~~v~~v~~spdg~~l~~gs~d--g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                      ....+.. .......++++|.+..|+.....  +.|..+++.......  +. ..    .......++++++++.++++-
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~-~~----~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV-TE----NIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EE-CS----SCSCEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EE-EC----CCCCceEEEEeccCCEEEEEE
Confidence            5443322 33568899999976666555443  678888876443221  11 11    125678999998865666666


Q ss_pred             eCCCcEEEEECCc-ceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          460 SEDSKLRILDGVD-VIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       460 s~dg~I~iwd~~~-~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      +..+.|..+|... ....+.. .........+++. .+..+++-...+.|..++..++.
T Consensus       183 ~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            6778999999752 2223322 1223456778875 34445555566789888876654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.013  Score=67.76  Aligned_cols=200  Identities=12%  Similarity=0.052  Sum_probs=130.4

Q ss_pred             ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe----eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~  384 (667)
                      ...|.++...+++.|..|+.++-|..|+..++......    .....|.++...+ ++. |..|+.++-|..+|..+++.
T Consensus       362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEE
T ss_pred             CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcE
Confidence            35689999888887888887777999998765433211    1345788988876 555 45577767799999988877


Q ss_pred             EEecc---cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          385 VDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       385 ~~~~~---~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      .....   ....|.++...++|+ |.+|+. +-+..||..+......  ............|.++...++|  .|.+++.
T Consensus       440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~d~~g--~lWigt~  513 (781)
T 3v9f_A          440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHH--YDTSNSQLLENFVRSIAQDSEG--RFWIGTF  513 (781)
T ss_dssp             EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEE--ECTTTSSCSCSCEEEEEECTTC--CEEEEES
T ss_pred             EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEec--ccCcccccccceeEEEEEcCCC--CEEEEEc
Confidence            65432   346788888887775 666666 5688898876554321  1111011123678999988886  4555665


Q ss_pred             CCcEEEEECCcc-eeeEEeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          462 DSKLRILDGVDV-IHKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       462 dg~I~iwd~~~~-~~~~~~~--~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      ++-|..||.... ...+...  -....|.++...++|.+.++.. +|.|..||..+...
T Consensus       514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY  571 (781)
T ss_dssp             SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred             CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence            445778886532 2222211  1245688999988988666554 67658888877653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.06  E-value=0.0037  Score=64.80  Aligned_cols=226  Identities=9%  Similarity=-0.039  Sum_probs=137.5

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-
Q 005956          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-  389 (667)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-  389 (667)
                      ..+|.+..++.+|+.+. ...|+..++..............+..++|.+.++.++++-...+.|..+++.+.....+.. 
T Consensus        35 ~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           35 RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             SSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             CCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            34455555555444443 3468888888776666665556789999998455555555567889999998766444322 


Q ss_pred             cCCceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEE
Q 005956          390 VRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRI  467 (667)
Q Consensus       390 ~~~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~i  467 (667)
                      ....+..+++.+.+..| ++-...+.|.++++.+.....  + ..    ........+++.|.++.++++-... +.|..
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l-~~----~~l~~P~~iavdp~~g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LW----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--E-EC----TTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--E-Ee----CCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence            23456789999855544 555556789999987543221  1 11    1124568999999765555555555 78988


Q ss_pred             EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccccc-cCccceeEEccCCcEEEEecCC
Q 005956          468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK-NSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       468 wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~-~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      +++..................++++|++..|+.+. ..+.|..++++.......... ......+++ .++.+..+.|..
T Consensus       187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~  265 (349)
T 3v64_C          187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT  265 (349)
T ss_dssp             EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred             EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence            88763222221112345678999998877777665 457899999886543222111 111223344 345555555543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.00  E-value=0.00072  Score=75.44  Aligned_cols=221  Identities=10%  Similarity=0.030  Sum_probs=129.4

Q ss_pred             CCeEEEEe------CCCcEEEEecCCCeEeEEeeCCCcE---------------------------------------EE
Q 005956          320 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC  354 (667)
Q Consensus       320 ~~~l~s~s------~Dg~I~iWd~~~~~~~~~~~h~~~V---------------------------------------~~  354 (667)
                      ++.++.++      .++.|+.+|..+++.+..+......                                       ..
T Consensus       166 ~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~  245 (599)
T 1w6s_A          166 KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGW  245 (599)
T ss_dssp             TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccc
Confidence            45555544      3799999999999998877532211                                       13


Q ss_pred             EEEeeCCCCEEEEEecC----------------CeEEEEecCCCeEEEecc---cCC-------ceEEEEEe-eCC---C
Q 005956          355 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VRD-------VISAICYI-PDG---K  404 (667)
Q Consensus       355 l~f~p~d~~~l~sgs~D----------------g~v~iwdl~~~~~~~~~~---~~~-------~v~~v~~s-pdg---~  404 (667)
                      +++.+ ...+++.+..+                +.|..+|..+++++-...   +..       ...-+... .+|   .
T Consensus       246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~  324 (599)
T 1w6s_A          246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK  324 (599)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred             eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence            45666 56677777655                379999999998764222   110       11112222 467   4


Q ss_pred             EEEEEecCCcEEEEEecCCcceeeeEeeccc------cC-cCCCC--------------------------eEEEEEccC
Q 005956          405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR------KK-TSGNK--------------------------ITGIQFSRD  451 (667)
Q Consensus       405 ~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~------~~-~~~~~--------------------------I~~l~~sp~  451 (667)
                      .++.++.+|.+.++|..+++..... .+...      .. ....+                          -..++++|+
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~-~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSAN-KLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEE-ESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEECCCcEEEEEECCCCCEeecc-cccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            6777889999999999988775431 11100      00 00001                          123556665


Q ss_pred             CCeEEEEE---------------------------------e------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEc
Q 005956          452 ESQRIMIT---------------------------------S------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFT  492 (667)
Q Consensus       452 g~~~l~~~---------------------------------s------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  492 (667)
                      . .++++.                                 +      ..|.|..||+.+.....+.. ...+...-.+.
T Consensus       404 ~-~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~  481 (599)
T 1w6s_A          404 R-ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMA  481 (599)
T ss_dssp             T-TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEE
T ss_pred             C-CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCccCcceE
Confidence            3 233221                                 1      34678888887655444432 11111111122


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCc-EEEEecC
Q 005956          493 TTGKHIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGV-SVAVQWP  544 (667)
Q Consensus       493 pdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~-~lav~w~  544 (667)
                      ..+.+|+.++.|+.|+.||.++++........  ....-+.|..+|+ ++++...
T Consensus       482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             ecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence            35678888999999999999999987654322  2333456778886 5555433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.99  E-value=0.00043  Score=79.81  Aligned_cols=193  Identities=12%  Similarity=0.076  Sum_probs=110.2

Q ss_pred             ceEEEEec-CCC-eEEE-EeCCC----cEEEEecCCC-eEeEEeeCCCcEEEEEEeeCCCCEEEEEecC-----CeEEEE
Q 005956          311 DVLDLAWS-NSN-YLLS-CSMDK----TVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSID-----GKVRIW  377 (667)
Q Consensus       311 ~V~~l~~s-~~~-~l~s-~s~Dg----~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iw  377 (667)
                      .+...+|| ||| +|+. ...+|    +|+++|+.++ +.+... .......+.|+| |++.|+....+     ..|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGP-DHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECS-STTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEec-CCCEEEEEEECCCCCCCEEEEE
Confidence            67889999 999 5553 33333    5999999998 632110 011134678999 88887777765     368888


Q ss_pred             ecCCCe----EEEecccCCceEEEEEeeCCCEEEEEecC---CcEEEEEecCCccee--eeEeeccccCcCCCCeEEEEE
Q 005956          378 GVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQF  448 (667)
Q Consensus       378 dl~~~~----~~~~~~~~~~v~~v~~spdg~~l~~gs~d---g~i~l~d~~~~~~~~--~~~~~~~~~~~~~~~I~~l~~  448 (667)
                      ++.+++    ++...........+.|+|||++|+.....   ..|.++|+.+.....  ..+  ..   ........+.|
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~---~~~~~~~s~~~  327 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--RP---REKGVRYDVQM  327 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--SC---CCTTCCEEEEE
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--ec---CCCCceEEEee
Confidence            887753    22211223446778999999998876633   367778887652211  111  11   11244455555


Q ss_pred             ccCCCeEEEEEeCC----CcEEEEECCcc--eee-EEeCCCCCCeEEEEEcCCCCEEEEEeCCCc--EEEEEc
Q 005956          449 SRDESQRIMITSED----SKLRILDGVDV--IHK-FKGLPKSGSQMSASFTTTGKHIISIGDDCR--VYVWNY  512 (667)
Q Consensus       449 sp~g~~~l~~~s~d----g~I~iwd~~~~--~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~--I~iWd~  512 (667)
                      +. |..+++.+..+    ..|..+|+...  ... +........+..+.+. .+.++++...++.  |+++++
T Consensus       328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            44 44666666554    26777776531  122 2221112234555554 2344556666775  555564

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.99  E-value=0.012  Score=62.03  Aligned_cols=202  Identities=11%  Similarity=-0.032  Sum_probs=126.5

Q ss_pred             cccceEEEEecCCC-eEE-EEeCCCcEEEEecCCC----eEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          308 HKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                      ....+..|+|++.+ .|+ +-...+.|+.+++...    .....+. .......+++.+..++++++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34567899999754 444 5556788999988752    2233333 445678899987456666666677899999998


Q ss_pred             CCeEEEec-ccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          381 EKRVVDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       381 ~~~~~~~~-~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      ........ .....+..++++|.+..|+....  .+.|...++.+...... +  .    ........|++.++++.+++
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~-~--~----~~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-V--T----ENIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE-E--C----SSCSCEEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE-E--E----CCCCceEEEEEEeCCCEEEE
Confidence            76554433 23455889999997666665542  36788888875433211 1  1    11256789999988655555


Q ss_pred             EEeCCCcEEEEECCcc-eeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          458 ITSEDSKLRILDGVDV-IHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       458 ~~s~dg~I~iwd~~~~-~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      +-...+.|..+|+... ...+ ...........+++. .+..+++-...+.|..+|..++..
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence            6566788999997632 2222 222233456677773 334444555667898888666654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.99  E-value=0.0029  Score=66.66  Aligned_cols=223  Identities=9%  Similarity=-0.034  Sum_probs=135.6

Q ss_pred             EEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-cC
Q 005956          313 LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR  391 (667)
Q Consensus       313 ~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-~~  391 (667)
                      .+.+..+..+|+.+. ...|+..++..............+..++|.+.++.++++-...+.|+.+++.+.....+.. ..
T Consensus        80 ~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~  158 (386)
T 3v65_B           80 SCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL  158 (386)
T ss_dssp             CEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred             eECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence            344444544444443 3578888988776666666666789999998455555555567889999998876544322 23


Q ss_pred             CceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEE
Q 005956          392 DVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILD  469 (667)
Q Consensus       392 ~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd  469 (667)
                      .....+++.+.+..| ++-...+.|.++++.+.....  + ..    ........+++.|.++.++++-... +.|..++
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l-~~----~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LW----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--E-EC----SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--e-ec----CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            356778898855554 444556788888876543221  1 11    1124578999998765555555455 7888888


Q ss_pred             CCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccccc-cCccceeEEccCCcEEEEecC
Q 005956          470 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK-NSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       470 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~-~~~~~~~~fs~dg~~lav~w~  544 (667)
                      +..................++|+|++..|+.+. ..+.|..++++.......... ......+++ ..+.+..+.|.
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~  307 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWH  307 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETT
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCC
Confidence            763322222222345678999998877776664 457899999876543222211 112223444 34555555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.98  E-value=0.0048  Score=62.95  Aligned_cols=181  Identities=8%  Similarity=-0.075  Sum_probs=115.8

Q ss_pred             CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC----CeEEEec-ccCCceEEEEEeeCCC
Q 005956          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPDGK  404 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~----~~~~~~~-~~~~~v~~v~~spdg~  404 (667)
                      ..|+..|+.+......+.....+..++|.+.++.++++-...+.|..+++.+    ....... ..-..+..+++.+.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            5689999988776666666677899999983444555555668999999876    2222222 2224568899987555


Q ss_pred             EE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCcceeeEEeCCC
Q 005956          405 GF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPK  482 (667)
Q Consensus       405 ~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~~~  482 (667)
                      .| ++-...+.|.++++.+..... .+. .     .......+++.|.++.++++.... +.|..+++............
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~-~~~-~-----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~  162 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKT-LFR-E-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  162 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEE-EEE-C-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred             eEEEEECCCCEEEEEeCCCCceEE-EEE-C-----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence            55 444567899999987543221 111 1     124678999998754544444333 68888886532222222123


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956          483 SGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  517 (667)
Q Consensus       483 ~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~  517 (667)
                      ......+++++++..|+.+. ..+.|..+|++....
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~  198 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce
Confidence            45678999999887777665 457899999986443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=0.035  Score=64.08  Aligned_cols=249  Identities=11%  Similarity=0.063  Sum_probs=151.6

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ..|.+|...++|..|..|+.++-+..||..+..........                                    ...
T Consensus        66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~------------------------------------~~~  109 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNP------------------------------------EDP  109 (781)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCT------------------------------------TCS
T ss_pred             cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeecccc------------------------------------CCC
Confidence            45999999988874666777755899998753221110000                                    000


Q ss_pred             eeeeccccceEEEEecC--CCeEEEEeCCCcEEEEecCCCeEeEEee------CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          303 QELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~--~~~l~s~s~Dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                      ..  -....|.++....  ++.|..++.++-|..||..+++......      ....|.++...+ ++ .|..|+.++-|
T Consensus       110 ~~--l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g-~lwigt~~~Gl  185 (781)
T 3v9f_A          110 QS--LITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAE-DG-KLYIGHVEGGL  185 (781)
T ss_dssp             SS--CSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEE-TT-EEEEEETTTEE
T ss_pred             CC--cccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECC-CC-CEEEEecCCCe
Confidence            00  0123588888877  7877777756668999988776544321      134688888876 55 45556666569


Q ss_pred             EEEecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          375 RIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      ..||..+++...+..        ....|.++...++|. |.+|+.+ -+.+||..+....................|.++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i  263 (781)
T 3v9f_A          186 SILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSI  263 (781)
T ss_dssp             EEEETTTTEEEEECC--------CCSSEEEEEECTTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEE
T ss_pred             EEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEE
Confidence            999998877654321        135688888887775 4556655 688898776544321111000001123679999


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcce-eeEEe-------------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVI-HKFKG-------------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~-------------~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      ...++|  .|.+++..+-|.++|..... ..+..             .-....|.++...++|. |-.|..++-|..|+.
T Consensus       264 ~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~  340 (781)
T 3v9f_A          264 KQLKDN--KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN  340 (781)
T ss_dssp             EECTTS--EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS
T ss_pred             EECCCC--CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC
Confidence            988876  56677775678889865322 11111             01245688999988886 445666677899988


Q ss_pred             CCCC
Q 005956          513 DELC  516 (667)
Q Consensus       513 ~~~~  516 (667)
                      ....
T Consensus       341 ~~~~  344 (781)
T 3v9f_A          341 APPT  344 (781)
T ss_dssp             SCCS
T ss_pred             CCCc
Confidence            7654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.004  Score=67.17  Aligned_cols=207  Identities=8%  Similarity=0.029  Sum_probs=119.6

Q ss_pred             cceEEEEe-------cCCC-eEEEEeCCC-------cEEEEecCC-CeEe-----EEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956          310 GDVLDLAW-------SNSN-YLLSCSMDK-------TVRMWQVGC-NQCL-----NVFDHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       310 ~~V~~l~~-------s~~~-~l~s~s~Dg-------~I~iWd~~~-~~~~-----~~~~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                      .....|+|       ++++ .|+.+...+       .|.+.+... +...     ..+..-.....++++|.++.++++-
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence            35788999       8888 566665543       255665333 1221     1222112335678898556666666


Q ss_pred             ecCCeEEEEecC-------CCeE--------------EEecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCcce
Q 005956          369 SIDGKVRIWGVC-------EKRV--------------VDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLK  426 (667)
Q Consensus       369 s~Dg~v~iwdl~-------~~~~--------------~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~  426 (667)
                      ..++.|..+|+.       ++..              +...........++|+|+|+.|.++ +....|+.++.......
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~  345 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE  345 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence            778889999997       4543              1112223456899999999965554 45678888776543211


Q ss_pred             e---eeEeec-ccc--------CcCCCCeE-EEEEc-------cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCC----
Q 005956          427 L---EKVDFH-DRK--------KTSGNKIT-GIQFS-------RDESQRIMITSEDSKLRILDGVDVIHKFKGLPK----  482 (667)
Q Consensus       427 ~---~~~~~~-~~~--------~~~~~~I~-~l~~s-------p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~----  482 (667)
                      .   ..+.-. +..        ........ .+...       ++ +.++++-....+|+.++..-.+.++.+...    
T Consensus       346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~-g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~  424 (496)
T 3kya_A          346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEE-YDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSL  424 (496)
T ss_dssp             ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCC-EEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHH
T ss_pred             ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCC-CeEEEEECCCCEEEEEeCCCCEEEEecccccccc
Confidence            1   111111 100        01112234 44443       33 355666667789999986544555544311    


Q ss_pred             ------------------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCc
Q 005956          483 ------------------SGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       483 ------------------~~~v~~v~~spd-g~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                                        -.....++++++ |.++++=..+..|+.++++....
T Consensus       425 ~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence                              134678999987 65555555677899999877654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.86  E-value=0.028  Score=57.42  Aligned_cols=219  Identities=10%  Similarity=0.023  Sum_probs=115.9

Q ss_pred             ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  384 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~  384 (667)
                      ...+.+|.|.+ +.++.++.++.|.. ..+.++.-....    +...+..+.+.+ ++..++.+ .++.|.. ....++.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence            34578888876 53334455664433 233343333322    234577888876 56555554 4565432 2222321


Q ss_pred             E-E-ecccCCceEEEEEeeCCCEEEEEecCCcEEE-EEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          385 V-D-WADVRDVISAICYIPDGKGFIVGSITGTCHF-YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       385 ~-~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l-~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      - . .......+..+.+.|++.+++++. .|.+.. .|-......  .+..     .....+..+.+.+++ . +++.+.
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~--~~~~-----~~~~~~~~~~~~~~g-~-~~~~~~  223 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWE--PHNR-----TTSRRLHNMGFTPDG-R-LWMIVN  223 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCE--EEEC-----CSSSCEEEEEECTTS-C-EEEEET
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCcee--ECCC-----CCCCccceeEECCCC-C-EEEEeC
Confidence            1 1 223445688999999988777664 444433 222111111  1111     123568889998886 3 455667


Q ss_pred             CCcEEEEECCcce--eeEEeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc----ccCccceeEEc
Q 005956          462 DSKLRILDGVDVI--HKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ----KNSVRSCEHFF  533 (667)
Q Consensus       462 dg~I~iwd~~~~~--~~~~~~--~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~----~~~~~~~~~fs  533 (667)
                      +|.+++.+.....  ......  .....+.++.+.+++..++++. +|.| ++..+.+..-....    .......+.|.
T Consensus       224 ~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          224 GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred             CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence            7888877421111  111111  1234578899998887777654 6766 45555554321111    11233456777


Q ss_pred             cCCcEEEEecC
Q 005956          534 SEGVSVAVQWP  544 (667)
Q Consensus       534 ~dg~~lav~w~  544 (667)
                      +++..+++...
T Consensus       302 ~~~~~~~~G~~  312 (327)
T 2xbg_A          302 SPDQGFILGQK  312 (327)
T ss_dssp             ETTEEEEECST
T ss_pred             CCCceEEEcCC
Confidence            77777776543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.86  E-value=0.018  Score=58.79  Aligned_cols=199  Identities=7%  Similarity=-0.075  Sum_probs=126.1

Q ss_pred             cceEEEEecCC-C-eEEEEeCCCcEEEEecCCCeEe-EEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956          310 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       310 ~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~~~-~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      ..+.++.|.+. + .+.+-...+.|..+++...... ..+ ..-.....+++.+.+++++++-...+.|.++++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            35678999874 4 4445566788999998766321 222 223456678888745666666666789999998865433


Q ss_pred             Ee-cccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          386 DW-ADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       386 ~~-~~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                      .+ .........+++.|.+..|+....  .+.|..+++.......  +...     ....-..++++++++.++++-+..
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~-----~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IINS-----EIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--EECS-----SCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--EEEC-----CCCCccEEEEeccCCEEEEEECCC
Confidence            32 234456889999997666666553  5778888776533221  1101     124568999999765666666677


Q ss_pred             CcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          463 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       463 g~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      +.|..+|... ....+. .........+++.. +..+.+-...+.|..++..++..
T Consensus       188 ~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             TEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            8999999762 222222 12345567788753 34444555668899999876654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.85  E-value=0.0042  Score=69.14  Aligned_cols=170  Identities=15%  Similarity=0.102  Sum_probs=97.4

Q ss_pred             CeEEEEecCCCeEEEecc---cC-------CceEEEEEe-eCCC---EEEEEecCCcEEEEEecCCcceeeeEeecc---
Q 005956          372 GKVRIWGVCEKRVVDWAD---VR-------DVISAICYI-PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFHD---  434 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~---~~-------~~v~~v~~s-pdg~---~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~---  434 (667)
                      +.|..+|..+++.+-...   +.       ....-+... .+|+   .++.++.+|.++++|..+++.... ..+..   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~-~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA-FPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE-EESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc-cccccCcc
Confidence            589999999999774321   21       011112222 4674   678899999999999988876543 11110   


Q ss_pred             ----------c------cCc--------CC------------CCeEEEEEccCCCeEEEEEe------------------
Q 005956          435 ----------R------KKT--------SG------------NKITGIQFSRDESQRIMITS------------------  460 (667)
Q Consensus       435 ----------~------~~~--------~~------------~~I~~l~~sp~g~~~l~~~s------------------  460 (667)
                                .      ...        ..            .....++++|+.+ ++++..                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence                      0      000        00            0011356666543 333322                  


Q ss_pred             ---------------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccC
Q 005956          461 ---------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS  525 (667)
Q Consensus       461 ---------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~  525 (667)
                                     .+|.|..||+.+.....+.... ..+..-.+...+.+|+.++.|+.++.||.++++.........
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~  527 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS  527 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence                           2578899998765544443211 111111122246788889999999999999999876644332


Q ss_pred             --ccceeEEccCCc-EEEEecC
Q 005956          526 --VRSCEHFFSEGV-SVAVQWP  544 (667)
Q Consensus       526 --~~~~~~fs~dg~-~lav~w~  544 (667)
                        ...-+.|..+|+ ++++...
T Consensus       528 g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          528 GIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             CCCSCCEEEEETTEEEEEEEEC
T ss_pred             CcccCceEEEECCEEEEEEEcc
Confidence              223366778886 5555443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.77  E-value=0.011  Score=62.59  Aligned_cols=188  Identities=9%  Similarity=-0.048  Sum_probs=120.5

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC----eEEE-ecccCCceEE
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVD-WADVRDVISA  396 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~----~~~~-~~~~~~~v~~  396 (667)
                      +|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++...    .... .......+..
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            444443 367999999877766666677788999999844445555456788999998762    2222 2223456788


Q ss_pred             EEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCcce
Q 005956          397 ICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDVI  474 (667)
Q Consensus       397 v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~-dg~I~iwd~~~~~  474 (667)
                      +++.+. ++.+++-...+.|.+.++.+...... +. .     .......|++.|.++.++++-.. .+.|...++....
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-~~-~-----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~  236 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FR-E-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  236 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-EE-C-----SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEE-Ee-C-----CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence            999984 44455555678899888875543221 11 1     12457899999975444444323 4789988876332


Q ss_pred             eeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956          475 HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  517 (667)
Q Consensus       475 ~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~  517 (667)
                      ..............+++++++..|+.+. ..+.|..+|++....
T Consensus       237 ~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          237 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence            2222222346788999999888887775 457899999876544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.72  E-value=0.006  Score=61.85  Aligned_cols=206  Identities=8%  Similarity=0.113  Sum_probs=127.0

Q ss_pred             eeccccceEEEEecCCC-eEEEEe-CCCcEEEEecCCCeEeEE-eeC-------CCcEEEEEE---eeCCCCEEEEEec-
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNV-FDH-------HNYVTCVQF---NPIDDNYFISGSI-  370 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~~~~~~~-~~h-------~~~V~~l~f---~p~d~~~l~sgs~-  370 (667)
                      +.....--.++.|.+.. .|+.++ ..++|..|+...+..... +..       ...+..+.|   .| ++.++++... 
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccc
Confidence            33444455678898744 555555 789999999986654433 222       114689999   57 6767765432 


Q ss_pred             ------------CCeEEEEecC---CCeEEEeccc--------------CCceEEEEEeeCCCEEEEEecC-CcEEEEEe
Q 005956          371 ------------DGKVRIWGVC---EKRVVDWADV--------------RDVISAICYIPDGKGFIVGSIT-GTCHFYKA  420 (667)
Q Consensus       371 ------------Dg~v~iwdl~---~~~~~~~~~~--------------~~~v~~v~~spdg~~l~~gs~d-g~i~l~d~  420 (667)
                                  +..|..||+.   +++.+.....              ......++..++|+..++++.. +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                        6789999999   6765532221              1248899999999999999988 88877777


Q ss_pred             cCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eEE----eC-CCCCCeEEE-EEcC
Q 005956          421 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFK----GL-PKSGSQMSA-SFTT  493 (667)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~----~~-~~~~~v~~v-~~sp  493 (667)
                      ......  .+.............+.|+++|+| +.|++....+.|..+|+..... .+.    +. ........+ ..-.
T Consensus       167 dG~~~~--~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~  243 (334)
T 2p9w_A          167 DGKTVS--TFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV  243 (334)
T ss_dssp             TSCCEE--EEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred             CCCEEe--eeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence            654322  222211111223447899999997 5566655599999999875433 121    11 011223333 3334


Q ss_pred             CCCE-EEEEeCCCcEEEEEcCC
Q 005956          494 TGKH-IISIGDDCRVYVWNYDE  514 (667)
Q Consensus       494 dg~~-l~sgs~Dg~I~iWd~~~  514 (667)
                      +|+. |++.+..+.+.+.+.+.
T Consensus       244 ~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          244 GNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             TTEEEEEEEETTEEEEEECSST
T ss_pred             CCEEEEEEcCCCCEEEEECCCC
Confidence            6777 44555566555555444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.71  E-value=0.018  Score=56.47  Aligned_cols=203  Identities=12%  Similarity=0.137  Sum_probs=123.3

Q ss_pred             eeeccccccEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLAS-GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Lat-gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      +.|.+-.+.+..++|+|++..|++ ...++.|...|.. +..                                      
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v--------------------------------------   60 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL--------------------------------------   60 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--------------------------------------
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--------------------------------------
Confidence            455666678999999998765554 6667777777765 221                                      


Q ss_pred             ccccCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE---eEEee-------CCCcEEEEEEeeCCC
Q 005956          295 FQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVFD-------HHNYVTCVQFNPIDD  362 (667)
Q Consensus       295 ~~~~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~---~~~~~-------h~~~V~~l~f~p~d~  362 (667)
                             +..+. +-......|++.+++ ++++.-.++.+.++++.....   +....       .......++|.| .+
T Consensus        61 -------~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~  132 (255)
T 3qqz_A           61 -------IRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QD  132 (255)
T ss_dssp             -------EEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TT
T ss_pred             -------EEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CC
Confidence                   11111 112457778888888 545555677899998865432   22221       234568999999 66


Q ss_pred             CEEEEEecCCeEEEEecCC---C---eEEEe-----cccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeE
Q 005956          363 NYFISGSIDGKVRIWGVCE---K---RVVDW-----ADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKV  430 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~---~---~~~~~-----~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~  430 (667)
                      +.|+++.......+|.+..   .   .+...     ......+.+++++|... ++++......+..+|....  ....+
T Consensus       133 ~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~  210 (255)
T 3qqz_A          133 HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEM  210 (255)
T ss_dssp             TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEE
T ss_pred             CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEE
Confidence            6666666655555555531   1   12111     01233578999999654 5555556678888887754  23333


Q ss_pred             eecccc---CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          431 DFHDRK---KTSGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       431 ~~~~~~---~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      .+....   ......--.|+|.++| + |++.++.+.++++.
T Consensus       211 ~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          211 SLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             ECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEE
T ss_pred             EcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEE
Confidence            333211   0112467899999997 4 56668877777765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.70  E-value=0.0052  Score=68.27  Aligned_cols=150  Identities=9%  Similarity=-0.032  Sum_probs=91.3

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCCC-----cEEE-EEEeeCCCCEEEEEec------CCeEEEEecCCCeEEEe
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW  387 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-----~V~~-l~f~p~d~~~l~sgs~------Dg~v~iwdl~~~~~~~~  387 (667)
                      ++.++.++.|+.|..+|..+++.+..+....     .+.+ ...   .+..++.++.      ++.|+.+|..+++.+-.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            4578888899999999999999988775322     2221 111   1345566654      79999999999987642


Q ss_pred             cccCCc---------------------------------------eEEEEEeeCCCEEEEEecC----------------
Q 005956          388 ADVRDV---------------------------------------ISAICYIPDGKGFIVGSIT----------------  412 (667)
Q Consensus       388 ~~~~~~---------------------------------------v~~v~~spdg~~l~~gs~d----------------  412 (667)
                      ......                                       ...+++.++...+++++.+                
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence            221110                                       0235677776777777642                


Q ss_pred             CcEEEEEecCCcceeeeEeecccc----CcCCCCeEEEEEccCCC--eEEEEEeCCCcEEEEECCcce
Q 005956          413 GTCHFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVI  474 (667)
Q Consensus       413 g~i~l~d~~~~~~~~~~~~~~~~~----~~~~~~I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~~~  474 (667)
                      +.|..+|..+++.... .....+.    .....++. +....+|.  ..++.++.+|.++++|..+..
T Consensus       272 ~~v~Ald~~tG~~~W~-~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  337 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWG-YQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             TEEEEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEEecCCCcEEEE-ecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence            2588999988876543 2211110    01112222 22234542  356778889999999976543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.68  E-value=0.0048  Score=65.96  Aligned_cols=196  Identities=10%  Similarity=-0.007  Sum_probs=120.0

Q ss_pred             ceEEEEecCC---CeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---C-eEEEEecCCCe
Q 005956          311 DVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G-KVRIWGVCEKR  383 (667)
Q Consensus       311 ~V~~l~~s~~---~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g-~v~iwdl~~~~  383 (667)
                      ....|+|.|+   +.|+.+...+.|+.+|..++..............++|.+ +++++++....   . .+..++...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4678999984   566666555899999998888777666666789999999 88844443311   1 23333332221


Q ss_pred             E-EEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          384 V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       384 ~-~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                      . ............++++| +|..+++-..++.|+.+|..++...........     ...-..++|+|+|..++++-..
T Consensus       219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----KGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----CSSCEEEEECTTSSEEEEEETT
T ss_pred             eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----CCCcccEEEeCCCCEEEEEeCC
Confidence            1 01111234456788999 666665655677899998875544222111111     1223479999997445556666


Q ss_pred             CCcEEEEECCc--c----eeeEEeC-C------------CCCCeEEEEE---------cCCCCEEEEEeCCCcEEEEEc
Q 005956          462 DSKLRILDGVD--V----IHKFKGL-P------------KSGSQMSASF---------TTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       462 dg~I~iwd~~~--~----~~~~~~~-~------------~~~~v~~v~~---------spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      .+.|+.++...  .    ...+.+. .            .-.....+++         .++|.+.++-...+.|+.++.
T Consensus       294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            78999987531  1    1222221 1            1124567888         677776666666778888875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.54  E-value=0.015  Score=64.63  Aligned_cols=147  Identities=15%  Similarity=0.102  Sum_probs=90.7

Q ss_pred             EEEEeCCCcEEEEecCCCeEeEEeeCCC-----cEEE-EEEeeCCCCEEEEEe------cCCeEEEEecCCCeEEEeccc
Q 005956          323 LLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWADV  390 (667)
Q Consensus       323 l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-----~V~~-l~f~p~d~~~l~sgs------~Dg~v~iwdl~~~~~~~~~~~  390 (667)
                      ++.++.|+.|..+|..+++.+..+....     .+++ ... . ++ .+++++      .++.|+.+|..+++.+-....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-V-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-E-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            8889999999999999999887765322     2221 111 1 34 455554      379999999999987632221


Q ss_pred             CCce---------------------------------------EEEEEeeCCCEEEEEecCC----------------cE
Q 005956          391 RDVI---------------------------------------SAICYIPDGKGFIVGSITG----------------TC  415 (667)
Q Consensus       391 ~~~v---------------------------------------~~v~~spdg~~l~~gs~dg----------------~i  415 (667)
                      ....                                       ..+++.+....+++++.++                .|
T Consensus       201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence            1110                                       1356777778888887653                78


Q ss_pred             EEEEecCCcceeeeEeecccc----CcCCCCeEEEEEc-cCCC--eEEEEEeCCCcEEEEECCcce
Q 005956          416 HFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFS-RDES--QRIMITSEDSKLRILDGVDVI  474 (667)
Q Consensus       416 ~l~d~~~~~~~~~~~~~~~~~----~~~~~~I~~l~~s-p~g~--~~l~~~s~dg~I~iwd~~~~~  474 (667)
                      .-+|..+++.... .....+.    .....++. +... .+|.  ..++.++.+|.++++|..+..
T Consensus       281 ~Ald~~TG~~~W~-~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  344 (599)
T 1w6s_A          281 FGRDADTGEAKFG-YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (599)
T ss_dssp             EEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             EEEeCCCCceeeE-eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence            8999998877543 2211110    00112222 2222 3442  467778899999999976543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.53  E-value=0.0037  Score=66.80  Aligned_cols=156  Identities=12%  Similarity=0.146  Sum_probs=101.3

Q ss_pred             cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-C----cEEEEEecCCcc
Q 005956          351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G----TCHFYKASGNDL  425 (667)
Q Consensus       351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g----~i~l~d~~~~~~  425 (667)
                      ....++++|.++..|+.+...+.|+.+|+.++.+..+.........++++++|+.|+++... +    .+.+++.. ...
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence            45678998621344555555588999999988877666666678999999999966666542 2    23334433 222


Q ss_pred             ee-eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eEEeCCCCCCeEEEEEcCCCCEEEEEe-
Q 005956          426 KL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIG-  502 (667)
Q Consensus       426 ~~-~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~spdg~~l~sgs-  502 (667)
                      .. ..+.  .     ......+++.|+++.++++-..++.|+.++...... .+...........++|+|+|++|+.+. 
T Consensus       217 ~~~~~l~--~-----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          217 KVITELT--K-----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             CSEEEEE--E-----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             eeeeeec--c-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            21 1111  1     134577889994446666666778999999874433 232222334578999999999665554 


Q ss_pred             CCCcEEEEEcCC
Q 005956          503 DDCRVYVWNYDE  514 (667)
Q Consensus       503 ~Dg~I~iWd~~~  514 (667)
                      ..+.|+.++.+.
T Consensus       290 ~~~~I~~~~~d~  301 (430)
T 3tc9_A          290 NQHYILRSDYDW  301 (430)
T ss_dssp             TTTEEEEEEEET
T ss_pred             CCCEEEEEeCCc
Confidence            567899988764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.53  E-value=0.092  Score=60.29  Aligned_cols=201  Identities=11%  Similarity=-0.021  Sum_probs=123.8

Q ss_pred             cccceEEEEecCC-C-eEEEEeCCCcEEEEecCCC----eEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          308 HKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       308 h~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                      ....+..|+|.+. + ++++-...+.|+.+++...    .....+. .......|++.+..++++++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            3456788999874 4 4445556688999988753    2233333 345667889987445666666677899999998


Q ss_pred             CCeEEEec-ccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          381 EKRVVDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       381 ~~~~~~~~-~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      ......+. ..-.....|+++|.+..|+....  .+.|...++.+...... +  .    ........|++.+.++.+++
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l-v--~----~~l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-V--T----ENIQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-E--C----SSCSCEEEEEEETTTTEEEE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE-E--e----CCCCCceEEEEecCCCeEEE
Confidence            76654433 23345889999997666665543  26788888865443211 1  1    11256789999987655555


Q ss_pred             EEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956          458 ITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  517 (667)
Q Consensus       458 ~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~  517 (667)
                      +-...+.|..+++..  ................|++.  +.+|+.+. ..+.|...+..++..
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  635 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcc
Confidence            555667899998753  22222221223345667763  34555554 557788888666643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.50  E-value=0.019  Score=58.55  Aligned_cols=182  Identities=9%  Similarity=-0.078  Sum_probs=113.1

Q ss_pred             CCcEEEEecCCCe--EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE--EEecccCCceEEEEEeeCCC
Q 005956          329 DKTVRMWQVGCNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGK  404 (667)
Q Consensus       329 Dg~I~iWd~~~~~--~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~spdg~  404 (667)
                      ...|+..++....  ....+.....+..++|.+.++.++++-...+.|..+++.+...  ......-..+..+++.+.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4678888987653  2223333346778999984455556656678899999887632  11122224567889987544


Q ss_pred             -EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCcceeeEEeCCC
Q 005956          405 -GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVIHKFKGLPK  482 (667)
Q Consensus       405 -~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~  482 (667)
                       .+++-...+.|.++++.+.....  + ..    ........+++.|.++.++++-. ..+.|..+++.-..........
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~--l-~~----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~  164 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKV--L-FW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  164 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEE--E-EC----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             eEEEEECCCCEEEEEECCCCcEEE--E-Ee----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence             44555567789999987543321  1 11    11255789999987544444432 3578888887532222212123


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956          483 SGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  517 (667)
Q Consensus       483 ~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~  517 (667)
                      ......+++++++..|+.+. ..+.|..++++....
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~  200 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  200 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence            45678999999877777664 457899999976443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.47  E-value=0.03  Score=64.33  Aligned_cols=183  Identities=8%  Similarity=-0.071  Sum_probs=118.2

Q ss_pred             CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe----EEE-ecccCCceEEEEEeeC
Q 005956          328 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVD-WADVRDVISAICYIPD  402 (667)
Q Consensus       328 ~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~----~~~-~~~~~~~v~~v~~spd  402 (667)
                      ....|+..++..............+..++|.+.++.++++-...+.|+.+++....    ... .......+..|++.+.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            34568888888776666666677888999998445555555566889999987631    122 2223455778999987


Q ss_pred             CCEEE-EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCcceeeEEeC
Q 005956          403 GKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL  480 (667)
Q Consensus       403 g~~l~-~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~  480 (667)
                      ++.|+ +-...+.|.+.++.+..... .+. .     .......|++.|.++.++++-... +.|.+.++..........
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~-l~~-~-----~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKT-LFR-E-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEE-EEE-C-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEE-EEe-C-----CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            75555 44567889999987554322 111 1     124578999999754444443233 688888876433333332


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956          481 PKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  517 (667)
Q Consensus       481 ~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~  517 (667)
                      ........|++++.+..|+.+. ..+.|...+++....
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence            2446788999998887777765 456899999876654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.46  E-value=0.032  Score=57.73  Aligned_cols=229  Identities=10%  Similarity=0.036  Sum_probs=122.4

Q ss_pred             ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE--ee----CCCcEEEEEEeeCC---CCEEEEEec-C-----Ce
Q 005956          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV--FD----HHNYVTCVQFNPID---DNYFISGSI-D-----GK  373 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~--~~----h~~~V~~l~f~p~d---~~~l~sgs~-D-----g~  373 (667)
                      -.....++|.|+|.|+.+..++.|++++  .++....  +.    .......|+|+| +   +..|+.+.. .     ..
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence            3456799999999767777789999998  4442211  11    235788999999 6   344444433 2     57


Q ss_pred             EEEEecCCCe------EEE-ec---ccCCceEEEEEeeCCCEEEEEec-------------CCcEEEEEecCCcc-----
Q 005956          374 VRIWGVCEKR------VVD-WA---DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL-----  425 (667)
Q Consensus       374 v~iwdl~~~~------~~~-~~---~~~~~v~~v~~spdg~~l~~gs~-------------dg~i~l~d~~~~~~-----  425 (667)
                      |..|+...+.      ++. +.   ........++|.|||..+++.+.             .|.|.-++....-.     
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            8888877542      111 11   11123468999999976655332             14555555443100     


Q ss_pred             ------eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc--------EEEEECCc---------------ceee
Q 005956          426 ------KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--------LRILDGVD---------------VIHK  476 (667)
Q Consensus       426 ------~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~--------I~iwd~~~---------------~~~~  476 (667)
                            ..+.+ ..+.     .....++|.|+++.++++-.....        |.+.....               ....
T Consensus       187 ~~~~~~~~~i~-a~G~-----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  260 (352)
T 2ism_A          187 LGRRGARPEVY-SLGH-----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP  260 (352)
T ss_dssp             TTCTTSCTTEE-EECC-----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             cCCCCCCccEE-EEcC-----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence                  00011 1111     235678899943344444333222        44433111               0000


Q ss_pred             EEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-------ccccccCccceeEEccCCcEEEEecCCCC
Q 005956          477 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP-------SSKQKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       477 ~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~-------~~~~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      .....+......++| .+|.++++.-..+.|...+++.....       ...........+.+.|||.+.++.|...+
T Consensus       261 ~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~~~g  337 (352)
T 2ism_A          261 LYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSNRDG  337 (352)
T ss_dssp             SEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred             eEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeCCCC
Confidence            111112334567777 46766666556677877777644310       01111123445788999988888876544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.42  E-value=0.056  Score=55.21  Aligned_cols=185  Identities=11%  Similarity=0.174  Sum_probs=116.8

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC---CCCE--EEEEe--c--CCeEEEEec--CCCeEEEecc-
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNY--FISGS--I--DGKVRIWGV--CEKRVVDWAD-  389 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~---d~~~--l~sgs--~--Dg~v~iwdl--~~~~~~~~~~-  389 (667)
                      +++.....+-+.+||+ +++.++.+.. ..+..+..-|.   .++.  ++.++  .  +++|.+|++  .++.+..... 
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~  119 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP  119 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence            6667777889999999 7888887754 56777776661   1221  33333  3  578999977  4555444321 


Q ss_pred             -----cC-CceEEEEE--eeC-CC-EEEEEecCCcEEEEEecC---CcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          390 -----VR-DVISAICY--IPD-GK-GFIVGSITGTCHFYKASG---NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       390 -----~~-~~v~~v~~--spd-g~-~l~~gs~dg~i~l~d~~~---~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                           .. ..+..+|+  +|. ++ ++++...+|.+..|++..   +....+.+.-.    .....+-.+...+.. ..|
T Consensus       120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f----~lgsq~EgcvvDd~~-g~L  194 (355)
T 3amr_A          120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF----KMNSQTEGMAADDEY-GRL  194 (355)
T ss_dssp             TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE----ECSSCEEEEEEETTT-TEE
T ss_pred             ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe----cCCCCcceEEEcCCC-CeE
Confidence                 11 56777888  664 44 677888899999999853   22222211111    113568888888763 689


Q ss_pred             EEEeCCCcEEEEECC-----cceeeEEe-CCC-CCCeEEEEE--cCCCC-EEEEEe-CCCcEEEEEcC
Q 005956          457 MITSEDSKLRILDGV-----DVIHKFKG-LPK-SGSQMSASF--TTTGK-HIISIG-DDCRVYVWNYD  513 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~-----~~~~~~~~-~~~-~~~v~~v~~--spdg~-~l~sgs-~Dg~I~iWd~~  513 (667)
                      +++-++.-|..++..     +....... ..+ ...+..+++  .++++ ||++++ .++...|||..
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            999998778888854     11111111 112 235777777  56666 777766 56799999996

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.33  E-value=0.0036  Score=70.99  Aligned_cols=193  Identities=11%  Similarity=0.085  Sum_probs=121.8

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCc-----------E-EEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  387 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~-----------V-~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~  387 (667)
                      ++.++.++.++.|.-+|..+++.+..+.....           + ..+.+   .+..++.++.|+.|..+|..+++++-.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence            55788888899999999999999988753211           0 12233   345788888999999999999987743


Q ss_pred             cccC-----CceEE-EEEeeCCCEEEEEec------CCcEEEEEecCCcceeeeEeeccccC------------------
Q 005956          388 ADVR-----DVISA-ICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKK------------------  437 (667)
Q Consensus       388 ~~~~-----~~v~~-v~~spdg~~l~~gs~------dg~i~l~d~~~~~~~~~~~~~~~~~~------------------  437 (667)
                      ....     ..+.+ ..+  .+..++++..      +|.|..+|..+++.....-.......                  
T Consensus       143 ~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  220 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (668)
T ss_dssp             EECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             eccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence            2221     11111 111  2345666553      58999999998887654211110000                  


Q ss_pred             ------cCCCCeEEEEEccCCCeEEEEEeCCC-------------------cEEEEECCcceeeEEeC--CCC-------
Q 005956          438 ------TSGNKITGIQFSRDESQRIMITSEDS-------------------KLRILDGVDVIHKFKGL--PKS-------  483 (667)
Q Consensus       438 ------~~~~~I~~l~~sp~g~~~l~~~s~dg-------------------~I~iwd~~~~~~~~~~~--~~~-------  483 (667)
                            ........+++.|++ ..+++++.++                   .|..+|..+........  .|.       
T Consensus       221 ~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~  299 (668)
T 1kv9_A          221 QYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT  299 (668)
T ss_dssp             CHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             ceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence                  001122346788874 5777776665                   38899987655544432  121       


Q ss_pred             CCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 005956          484 GSQMSASFTTTGK---HIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       484 ~~v~~v~~spdg~---~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      .+.....+..+|+   .|+.++.+|.++++|..+++..
T Consensus       300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            2333334444675   7889999999999999999865

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.26  E-value=0.14  Score=52.85  Aligned_cols=227  Identities=14%  Similarity=0.124  Sum_probs=117.2

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      ..-+.|+|.|||+++++ ..+|.|.+++  .+....+.                                      ..+ 
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~--------------------------------------~~~-   68 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYA--------------------------------------ELS-   68 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEE--------------------------------------ECC-
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEee--------------------------------------cce-
Confidence            34679999999996555 5668898887  32111000                                      000 


Q ss_pred             eeeeccccceEEEEecCC----CeEEEE-eCC-----CcEEEEecCCCe-----Ee-EEeeC----CCcEEEEEEeeCCC
Q 005956          303 QELHGHKGDVLDLAWSNS----NYLLSC-SMD-----KTVRMWQVGCNQ-----CL-NVFDH----HNYVTCVQFNPIDD  362 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~----~~l~s~-s~D-----g~I~iWd~~~~~-----~~-~~~~h----~~~V~~l~f~p~d~  362 (667)
                       .+.........|+|+|+    +.|+.+ ...     ..|..|+...+.     .+ ..+..    ......++|.| ++
T Consensus        69 -v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG  146 (352)
T 2ism_A           69 -VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DG  146 (352)
T ss_dssp             -CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TS
T ss_pred             -EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CC
Confidence             11112345788999998    444433 322     568788876542     11 11221    12346899999 88


Q ss_pred             CEEEEEec-------------CCeEEEEecCCC-------------eEEEecccCCceEEEEEee-CCCEEEEEecCCcE
Q 005956          363 NYFISGSI-------------DGKVRIWGVCEK-------------RVVDWADVRDVISAICYIP-DGKGFIVGSITGTC  415 (667)
Q Consensus       363 ~~l~sgs~-------------Dg~v~iwdl~~~-------------~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i  415 (667)
                      .++++.+.             .++|.-++....             ....+.........++|+| +|+.+++-.....+
T Consensus       147 ~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~  226 (352)
T 2ism_A          147 MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGE  226 (352)
T ss_dssp             CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC---
T ss_pred             CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCC
Confidence            76666432             256666665531             1001111123366789999 56555443222221


Q ss_pred             ------EEEEecCCcce---------------eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-
Q 005956          416 ------HFYKASGNDLK---------------LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-  473 (667)
Q Consensus       416 ------~l~d~~~~~~~---------------~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-  473 (667)
                            .|.-+..+..-               .....+     ........++|. +| .++++.-..+.|...++... 
T Consensus       227 ~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-----~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~  299 (352)
T 2ism_A          227 QGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-----PQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGER  299 (352)
T ss_dssp             ---CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-----TTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEET
T ss_pred             CCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-----CCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCC
Confidence                  23322222100               000000     112345678883 43 55555556677777765421 


Q ss_pred             -------eeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956          474 -------IHKFKGLPKSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       474 -------~~~~~~~~~~~~v~~v~~spdg~~l~sgs  502 (667)
                             ...+..  ....+..+++.|||.+.++..
T Consensus       300 ~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          300 GRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred             cceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence                   112211  346789999999997766654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.25  E-value=0.072  Score=53.93  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=81.8

Q ss_pred             eEEEEe---cCCCeEEEEeC--------------CCcEEEEecC---CCeEeEEeeC-------------C-CcEEEEEE
Q 005956          312 VLDLAW---SNSNYLLSCSM--------------DKTVRMWQVG---CNQCLNVFDH-------------H-NYVTCVQF  357 (667)
Q Consensus       312 V~~l~~---s~~~~l~s~s~--------------Dg~I~iWd~~---~~~~~~~~~h-------------~-~~V~~l~f  357 (667)
                      +..|.|   .++++|+.+..              +..|..+|+.   +++.+.....             . .....++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            478888   57784443322              5779999999   7877766541             1 24789999


Q ss_pred             eeCCCCEEEEEecC-CeEEEEecCCCeEEEecc------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecC
Q 005956          358 NPIDDNYFISGSID-GKVRIWGVCEKRVVDWAD------VRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (667)
Q Consensus       358 ~p~d~~~l~sgs~D-g~v~iwdl~~~~~~~~~~------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~  422 (667)
                      .+ +|+..++++.. +.|..++........+..      .....+.|+++|+|+.|++....|.+..+|+..
T Consensus       145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            99 99999999988 888888887664443221      122367899999999999987799999999883

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.16  E-value=0.0012  Score=75.13  Aligned_cols=200  Identities=11%  Similarity=-0.042  Sum_probs=117.8

Q ss_pred             cceEEEEecCCC-eEEEE-eCCCcEEEEecCC----CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956          310 GDVLDLAWSNSN-YLLSC-SMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  382 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~-s~Dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~  382 (667)
                      ..+..|+|.+.+ .|+.+ ...+.|+.+++.+    ......+. .......|++.+..++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            456778898755 55544 4567899999875    22222221 12234567887635566666566788999999876


Q ss_pred             eEEEecc-cCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          383 RVVDWAD-VRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       383 ~~~~~~~-~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                      ....+.. .......++++|.+.+|+....  .+.|..+++.......  + ..    ........|+|+|+++.++++-
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l-~~----~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--L-VT----ENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--E-SC----SSCSSCCCEEECTTTCCEEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--E-Ee----CCCCCccEEEEeccCCEEEEEe
Confidence            6554433 2345778899996655555432  2677777776433221  1 00    0124467899999876666676


Q ss_pred             eCCCcEEEEECCcc-eeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          460 SEDSKLRILDGVDV-IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       460 s~dg~I~iwd~~~~-~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      +..+.|.++|+... ...+.. .........+++..+ .++++....+.|..++..++..
T Consensus       559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred             cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence            77789999997532 222211 112233445566443 3444445567899888766654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.15  E-value=0.0053  Score=69.48  Aligned_cols=225  Identities=10%  Similarity=0.079  Sum_probs=117.4

Q ss_pred             EEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCc--c-ccCCCCeEEecccC-CC-----CceeecC-CC
Q 005956          225 IWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGF--G-SNAKEGKIKFGKKK-SS-----HVPVVIP-DE  293 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~~-----~~~~~~~-~~  293 (667)
                      ..++++.++|++++.||. +..+.+||..+.......-.+..+.  . +...++++.+.... ..     ...+..+ ..
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            345778899999999984 5689999988765444332222221  1 12225555544431 11     1111111 11


Q ss_pred             cccccC----CcceeeeccccceEEEEecCCC-eEEEEeCC---------CcEEEEecCCCeEeEEee-CC---------
Q 005956          294 VFQIEE----SPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD-HH---------  349 (667)
Q Consensus       294 ~~~~~~----~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---------g~I~iWd~~~~~~~~~~~-h~---------  349 (667)
                      .|..-.    .+...- .+.     ..+..++ .++.++.+         ..+..||..+........ +.         
T Consensus       325 ~W~~~~~~~~~p~~~~-~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~  398 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTA-DKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA  398 (656)
T ss_dssp             EEEEETTSCSGGGCCC-CTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred             cceeCCCccccccccc-ccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCC
Confidence            111100    011000 010     1122333 34444444         457788888776444332 11         


Q ss_pred             CcEEEEEEeeCCCCEEEEEecCC-----------eEEEEecCCCeEEEec--c--cCCceEEEEEeeCCCEEEEEecC--
Q 005956          350 NYVTCVQFNPIDDNYFISGSIDG-----------KVRIWGVCEKRVVDWA--D--VRDVISAICYIPDGKGFIVGSIT--  412 (667)
Q Consensus       350 ~~V~~l~f~p~d~~~l~sgs~Dg-----------~v~iwdl~~~~~~~~~--~--~~~~v~~v~~spdg~~l~~gs~d--  412 (667)
                      ..-.++.|...++++++.|+.++           .|.+||..+..-....  .  ....-.+++..|+|+.+++|+.+  
T Consensus       399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~  478 (656)
T 1k3i_A          399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG  478 (656)
T ss_dssp             BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred             CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence            12344555444778888887543           6888898887655432  1  12223455667899999998864  


Q ss_pred             ---------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956          413 ---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  461 (667)
Q Consensus       413 ---------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~  461 (667)
                               ..+.+||..+......     ..............+.|+| ++++.|+.
T Consensus       479 ~~~~~~~~~~~v~~ydp~t~~W~~~-----~~~~~~R~~hs~a~ll~dg-~v~v~GG~  530 (656)
T 1k3i_A          479 IPFEDSTPVFTPEIYVPEQDTFYKQ-----NPNSIVRVYHSISLLLPDG-RVFNGGGG  530 (656)
T ss_dssp             CTTCCCSBCCCCEEEEGGGTEEEEC-----CCCSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred             cCcCCCCcccceEEEcCCCCceeec-----CCCCCccccccHhhcCCCc-EEEecCCC
Confidence                     4689999987654321     1111111223345566775 67777774

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.13  E-value=0.27  Score=50.62  Aligned_cols=229  Identities=13%  Similarity=0.057  Sum_probs=120.0

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      -..-+.|+|.|||+++++ ..+|.|++++. ++. ..+.                                      ..+
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~--------------------------------------~~~   66 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVA--------------------------------------SFD   66 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEE--------------------------------------ECC
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEee--------------------------------------ccc
Confidence            345789999999985555 55688888862 211 0000                                      000


Q ss_pred             ceeeeccccceEEEEecCC----CeEEEEeC----C----CcEEEEecCCC-------eEe-EEee--CCCcEEEEEEee
Q 005956          302 LQELHGHKGDVLDLAWSNS----NYLLSCSM----D----KTVRMWQVGCN-------QCL-NVFD--HHNYVTCVQFNP  359 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~----~~l~s~s~----D----g~I~iWd~~~~-------~~~-~~~~--h~~~V~~l~f~p  359 (667)
                        .+.........|+++|+    +.|+.+..    +    ..|..|+....       +.+ ..+.  .......++|.|
T Consensus        67 --v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p  144 (354)
T 3a9g_A           67 --VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP  144 (354)
T ss_dssp             --CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT
T ss_pred             --eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC
Confidence              01112345788999997    54443332    3    56777777654       111 1122  112346789999


Q ss_pred             CCCCEEEEEec-------------CCeEEEEecCCC--------e-EEEecccCCceEEEEEee-CCCEEEEEecCC---
Q 005956          360 IDDNYFISGSI-------------DGKVRIWGVCEK--------R-VVDWADVRDVISAICYIP-DGKGFIVGSITG---  413 (667)
Q Consensus       360 ~d~~~l~sgs~-------------Dg~v~iwdl~~~--------~-~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg---  413 (667)
                       ++.++++.+.             .|+|.-++....        . .+....+ .....++|+| +|+.+++-....   
T Consensus       145 -DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~d  222 (354)
T 3a9g_A          145 -DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHD  222 (354)
T ss_dssp             -TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCC
T ss_pred             -CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCc
Confidence             8877766432             245666665432        0 1111222 3356799999 566555432221   


Q ss_pred             cEEEEEecCCcc---------------eeeeEeeccccCcCCCCeEEEEEc-------cCCCeEEEEEeCCCcEEEEECC
Q 005956          414 TCHFYKASGNDL---------------KLEKVDFHDRKKTSGNKITGIQFS-------RDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       414 ~i~l~d~~~~~~---------------~~~~~~~~~~~~~~~~~I~~l~~s-------p~g~~~l~~~s~dg~I~iwd~~  471 (667)
                      .|.+.  ..+..               ......+    .........+.|.       .+| .++++.-..+.|...++.
T Consensus       223 ei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~----~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~  295 (354)
T 3a9g_A          223 EVNII--LKGGNYGWPLATGKAGRGEFVDPVIDT----GSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFG  295 (354)
T ss_dssp             EEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC----TTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEEC
T ss_pred             EEEEe--cCCCcCCCCcccCCCCCCCCcCCEeec----CCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEEC
Confidence            13322  21110               0000011    0112457888884       344 566666667788888866


Q ss_pred             cc--ee-eEEeC-CCCCCeEEEEEcCCCCEEEEEe
Q 005956          472 DV--IH-KFKGL-PKSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       472 ~~--~~-~~~~~-~~~~~v~~v~~spdg~~l~sgs  502 (667)
                      ..  .. ..... .....+..+++.|||.+.++..
T Consensus       296 ~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          296 DNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             GGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            31  21 11221 1246788999999997666654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.11  E-value=0.19  Score=51.81  Aligned_cols=229  Identities=11%  Similarity=0.032  Sum_probs=123.9

Q ss_pred             ccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEEee----CCCcEEEEEEeeCC---CCEEEEEec----C----C
Q 005956          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD----HHNYVTCVQFNPID---DNYFISGSI----D----G  372 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~~~----h~~~V~~l~f~p~d---~~~l~sgs~----D----g  372 (667)
                      -.....|+|.|++.|+.+..++.|++++. .++ .+..+.    .......|+|+| +   +..|+.+..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence            34578899999997777788899999973 444 222211    234688999999 5   344444433    3    5


Q ss_pred             eEEEEecCCC-------eE-EE-ec-ccCCceEEEEEeeCCCEEEEEec-------------CCcEEEEEecCCcc----
Q 005956          373 KVRIWGVCEK-------RV-VD-WA-DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL----  425 (667)
Q Consensus       373 ~v~iwdl~~~-------~~-~~-~~-~~~~~v~~v~~spdg~~l~~gs~-------------dg~i~l~d~~~~~~----  425 (667)
                      .|..|+....       +. +. +. ........++|.|||.++++.+.             .|.|.-++....-.    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777877654       11 11 11 11123567999999986665332             23455454432100    


Q ss_pred             --eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCc---------------cee-eEEeCCCCC
Q 005956          426 --KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVD---------------VIH-KFKGLPKSG  484 (667)
Q Consensus       426 --~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg---~I~iwd~~~---------------~~~-~~~~~~~~~  484 (667)
                        ..+.+ ..+.     .....++|.|+.+.++++-....   .|.+.....               ... .+.......
T Consensus       186 f~~~~i~-a~G~-----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~  259 (354)
T 3a9g_A          186 FPNSPIW-SYGH-----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW  259 (354)
T ss_dssp             STTCCEE-EECC-----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred             CCCCcEE-EEcc-----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence              00111 1111     23568999994334444332221   244433111               000 111101234


Q ss_pred             CeEEEEEc-------CCCCEEEEEeCCCcEEEEEcCCC-Cc----cccccccCccceeEEccCCcEEEEecCC
Q 005956          485 SQMSASFT-------TTGKHIISIGDDCRVYVWNYDEL-CF----PSSKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       485 ~v~~v~~s-------pdg~~l~sgs~Dg~I~iWd~~~~-~~----~~~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ....++|.       .+|.++++.-..+.|...+++.. ..    ............+.+.|||.+.++.|..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~~~  332 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTSNR  332 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEECTT
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEeCC
Confidence            57788883       56777777666778888888753 21    1111112234457889999888887753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.049  Score=58.71  Aligned_cols=154  Identities=11%  Similarity=0.050  Sum_probs=95.6

Q ss_pred             ceEEEEecCC-C-eEEEEeC-CCcEEEEecCCCeEeEEeeC----CCcEEEEEE-------eeCCCCEEEEEecCC----
Q 005956          311 DVLDLAWSNS-N-YLLSCSM-DKTVRMWQVGCNQCLNVFDH----HNYVTCVQF-------NPIDDNYFISGSIDG----  372 (667)
Q Consensus       311 ~V~~l~~s~~-~-~l~s~s~-Dg~I~iWd~~~~~~~~~~~h----~~~V~~l~f-------~p~d~~~l~sgs~Dg----  372 (667)
                      ....|+|.|. + .|+.+.. .+.|++.|+.++........    ......++|       ++ +++.|+++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            4568899983 3 5554444 46799999998877766542    235899999       99 888666666554    


Q ss_pred             ---eEEEEecCC-CeEE-----EecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEec-------CCcc------e---
Q 005956          373 ---KVRIWGVCE-KRVV-----DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKAS-------GNDL------K---  426 (667)
Q Consensus       373 ---~v~iwdl~~-~~~~-----~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~-------~~~~------~---  426 (667)
                         .|.+++... +...     ...........++++|+ +.++++-..++.|..+|+.       +...      .   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               266665333 2221     11111234567889995 5555556677889999997       4443      0   


Q ss_pred             -eee-EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956          427 -LEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  470 (667)
Q Consensus       427 -~~~-~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~  470 (667)
                       ... ....     .......|+|+|+|..++++-.....|+.++.
T Consensus       299 ~~~~l~~~~-----~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          299 TFKQLFTIA-----DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TEEEEEECS-----SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccceeEecC-----CCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence             111 1111     12446799999997434555566778998653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.09  E-value=0.081  Score=54.02  Aligned_cols=141  Identities=13%  Similarity=0.164  Sum_probs=90.4

Q ss_pred             CCcEEEEecC--CCeEeEEeeC-------C-CcEEEEEE--eeCCCC-EEEEEecCCeEEEEecC-------CCeEEEec
Q 005956          329 DKTVRMWQVG--CNQCLNVFDH-------H-NYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC-------EKRVVDWA  388 (667)
Q Consensus       329 Dg~I~iWd~~--~~~~~~~~~h-------~-~~V~~l~f--~p~d~~-~l~sgs~Dg~v~iwdl~-------~~~~~~~~  388 (667)
                      +.+|.+|++.  ++. +..+..       . ..+..+++  +|..+. ++++...+|.+..|++.       +.+++...
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            5799999773  443 444421       1 45666777  663443 67888889999999883       33556666


Q ss_pred             ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc-eeeeEeeccccCcCCCCeEEEEE--ccCCCeEEEEEe-CCCc
Q 005956          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQF--SRDESQRIMITS-EDSK  464 (667)
Q Consensus       389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~-~~~~~~~~~~~~~~~~~I~~l~~--sp~g~~~l~~~s-~dg~  464 (667)
                      .....+..+.+.+....|+++-.+.-|..|+.....- ....+.... ...-...+..|++  .+++..+|++++ .++.
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            6677899999999888999999987776677542221 111121111 1111235788887  455544666666 5679


Q ss_pred             EEEEECC
Q 005956          465 LRILDGV  471 (667)
Q Consensus       465 I~iwd~~  471 (667)
                      +.+||..
T Consensus       256 ~~Vydr~  262 (355)
T 3amr_A          256 YAIYDRQ  262 (355)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.07  E-value=0.46  Score=53.05  Aligned_cols=195  Identities=7%  Similarity=-0.025  Sum_probs=125.1

Q ss_pred             cceEEEEecCCC-e-EEEEeCCCcEEEEecCCCeEeEEeeC-CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956          310 GDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (667)
Q Consensus       310 ~~V~~l~~s~~~-~-l~s~s~Dg~I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~  386 (667)
                      ..+..|+|++.+ . +.+-..++.|+.+++........+.. ......+++.+..++++++-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            457889999855 4 44556678999999876544444432 24567888887456666666667889999987654332


Q ss_pred             ec-ccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          387 WA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       387 ~~-~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                      +. ..-.....+++.|....|.....  .+.|...++.+...... +  .     .......|++.+++..++++-...+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l-~--~-----~~~~P~GlalD~~~~~LY~aD~~~~  188 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL-V--P-----NVGRANGLTIDYAKRRLYWTDLDTN  188 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E--C-----SCSSEEEEEEETTTTEEEEEETTTT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE-E--C-----CCCCcceEEEccccCEEEEEECCCC
Confidence            22 33456789999996556655542  46777777765443221 1  1     1356789999998656666666778


Q ss_pred             cEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCC
Q 005956          464 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELC  516 (667)
Q Consensus       464 ~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~  516 (667)
                      .|..+|+... ...+..  .......+++.. + +|+.+ ...+.|...|..++.
T Consensus       189 ~I~~~d~dG~~~~v~~~--~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          189 LIESSNMLGLNREVIAD--DLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEEETTSCSCEEEEE--CCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEcCCCCceEEeec--cCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCC
Confidence            9999997532 222322  334556777754 3 45444 456888888876654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.97  E-value=0.29  Score=50.42  Aligned_cols=67  Identities=7%  Similarity=0.089  Sum_probs=39.2

Q ss_pred             CCeEEEEEccCC------CeEEEEEeCCCcEEEEECCcc--eeeEEeC-CCCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 005956          441 NKITGIQFSRDE------SQRIMITSEDSKLRILDGVDV--IHKFKGL-PKSGSQMSASFTTTGKHIISIG-DDCRV  507 (667)
Q Consensus       441 ~~I~~l~~sp~g------~~~l~~~s~dg~I~iwd~~~~--~~~~~~~-~~~~~v~~v~~spdg~~l~sgs-~Dg~I  507 (667)
                      .....+.|...+      +.++++.-..+.|...++...  ....... .....+..+++.|||.+.++.. .+|.|
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            356778886421      356666666777777775432  1111111 1235789999999998666543 34433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.96  E-value=0.022  Score=63.28  Aligned_cols=85  Identities=16%  Similarity=0.096  Sum_probs=53.4

Q ss_pred             CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      +|.|..||+.+++++-.......+..-.....+..+++|+.||.++.||.++++...+ .....     ...-.-+.|..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~-~~~~~-----g~~a~P~~y~~  538 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGS-----GIVSPPITWEQ  538 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS-----CCCSCCEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE-ecCCC-----CcccCceEEEE
Confidence            5789999999998774333332332222234567888899999999999999887654 22211     11112355667


Q ss_pred             CCCeEEEEEeC
Q 005956          451 DESQRIMITSE  461 (667)
Q Consensus       451 ~g~~~l~~~s~  461 (667)
                      +|..++++.+.
T Consensus       539 ~G~qYv~~~~G  549 (582)
T 1flg_A          539 DGEQYLGVTVG  549 (582)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEcc
Confidence            77566666554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.95  E-value=0.31  Score=50.17  Aligned_cols=191  Identities=12%  Similarity=0.116  Sum_probs=110.2

Q ss_pred             cceEEEEecCCCeEEEEe-------------CCCcEEEEecCC--CeE--eEEee-----CCCcEEEEEEeeC-CCC-EE
Q 005956          310 GDVLDLAWSNSNYLLSCS-------------MDKTVRMWQVGC--NQC--LNVFD-----HHNYVTCVQFNPI-DDN-YF  365 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s-------------~Dg~I~iWd~~~--~~~--~~~~~-----h~~~V~~l~f~p~-d~~-~l  365 (667)
                      ....++...++|.+++++             .+|.|.++|..+  .+.  +....     ..-....+.+.+. ++. +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            345567778888656554             689999999873  232  22211     1236778888762 233 34


Q ss_pred             EEE-ec--CCeEEEEecCC--CeEEEe---c-ccCCceEEEEEeeCCCEEEEEec---C------------CcEEEEEec
Q 005956          366 ISG-SI--DGKVRIWGVCE--KRVVDW---A-DVRDVISAICYIPDGKGFIVGSI---T------------GTCHFYKAS  421 (667)
Q Consensus       366 ~sg-s~--Dg~v~iwdl~~--~~~~~~---~-~~~~~v~~v~~spdg~~l~~gs~---d------------g~i~l~d~~  421 (667)
                      +.+ ..  +.+|.+|++..  +.....   . ..-...+.+.+.++|.++++...   +            ..-.+|.+.
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444 33  45677877654  332221   1 12345889999999987776541   1            223344443


Q ss_pred             CCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---c--eeeEEeCCCCCCeEEEEEcC-CC
Q 005956          422 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---V--IHKFKGLPKSGSQMSASFTT-TG  495 (667)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~--~~~~~~~~~~~~v~~v~~sp-dg  495 (667)
                      ..+...   ...+     -..-+.++|+||+..++++-+..+.|+.|++..   .  ...+ .  ..+..-.+++.+ +|
T Consensus       210 ~~~~~~---~~~~-----l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~--~~g~PDGi~vD~e~G  278 (355)
T 3sre_A          210 PNDVRV---VAEG-----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S--FDTLVDNISVDPVTG  278 (355)
T ss_dssp             TTCCEE---EEEE-----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E--CSSEEEEEEECTTTC
T ss_pred             CCeEEE---eecC-----CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e--CCCCCceEEEeCCCC
Confidence            332211   1111     145689999999855666666788999999642   1  1222 1  245677888988 58


Q ss_pred             CEEEEEeCC-CcEEEEE
Q 005956          496 KHIISIGDD-CRVYVWN  511 (667)
Q Consensus       496 ~~l~sgs~D-g~I~iWd  511 (667)
                      ++.+++..+ +.|..|+
T Consensus       279 ~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          279 DLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             CEEEEEESCHHHHHSCC
T ss_pred             cEEEEecCCceEEEEEC
Confidence            877766544 3444444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.90  E-value=0.063  Score=56.06  Aligned_cols=148  Identities=11%  Similarity=0.185  Sum_probs=93.6

Q ss_pred             CCCEEEEEecCCeEEEEecCCCeE---EEecc--cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc----------
Q 005956          361 DDNYFISGSIDGKVRIWGVCEKRV---VDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL----------  425 (667)
Q Consensus       361 d~~~l~sgs~Dg~v~iwdl~~~~~---~~~~~--~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~----------  425 (667)
                      ++..++.+- ++.||.-++..+..   +....  .-+.|..+..+|+|++||+.+.. .|.|..+.....          
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence            455555443 46777777764332   22221  12357889999999999998654 888888873221          


Q ss_pred             -eeeeEeeccccCcCCCCeEEEEEccCCC--eEEEEEeCCCcEEEEECCc----ce------eeEEeCCCCCCeEEEEEc
Q 005956          426 -KLEKVDFHDRKKTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVD----VI------HKFKGLPKSGSQMSASFT  492 (667)
Q Consensus       426 -~~~~~~~~~~~~~~~~~I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~----~~------~~~~~~~~~~~v~~v~~s  492 (667)
                       ....+.+.........+|..+.|+|-+.  ..|++-..|+.|++||+..    +.      ..+........|.+++|+
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg  188 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS  188 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence             1112222221111357899999999753  4899999999999999764    11      111111223678899999


Q ss_pred             CCCCEEEEEe--CCCcEEEE
Q 005956          493 TTGKHIISIG--DDCRVYVW  510 (667)
Q Consensus       493 pdg~~l~sgs--~Dg~I~iW  510 (667)
                      .++-.|+..+  +.|.||-.
T Consensus       189 ~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          189 KDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TTSSCEEEEECTTSCEEEEE
T ss_pred             CCCcEEEEEecCCCCCEEEE
Confidence            9887777755  77887754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.89  E-value=0.23  Score=55.47  Aligned_cols=199  Identities=7%  Similarity=-0.061  Sum_probs=117.9

Q ss_pred             cceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeE-eEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956          310 GDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQC-LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      ..+..|+|++.+ .|+ +-...+.|..+++..... ...+. .-.....+++.+.+++++++-...+.|.+.++......
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            456789998755 554 444567888888876532 22333 23578899999845555666566789999999876543


Q ss_pred             Eec-ccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          386 DWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       386 ~~~-~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                      .+. ..-.....+++.|.+..|.....  .+.|...++.+...... +  .    ........|++.++++.++++-...
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l-~--~----~~~~~P~Glald~~~~~LY~aD~~~  192 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-I--N----SEIYWPNGLTLDYEEQKLYWADAKL  192 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E--C----SSCSSEEEEEEETTTTEEEEEETTT
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE-E--e----CCCCCCcEEEEEccCCEEEEEeCCC
Confidence            322 33455788999997666655543  35666666654333211 1  1    1125678999999765666666677


Q ss_pred             CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCc
Q 005956          463 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCF  517 (667)
Q Consensus       463 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~  517 (667)
                      +.|..+|+..................+++..+  .|+.+ ...+.|...|..+++.
T Consensus       193 ~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          193 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             CCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred             CeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence            88999987532221111111223346676554  55544 3567888888877653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.86  E-value=0.43  Score=53.27  Aligned_cols=186  Identities=11%  Similarity=0.041  Sum_probs=119.1

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc-CCceEEE
Q 005956          321 NYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RDVISAI  397 (667)
Q Consensus       321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~-~~~v~~v  397 (667)
                      .+|+.+ ....|+..++.+......+.  .-..+..++|++.++.++++-..++.|..+++........... ...+..+
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM   85 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence            334433 45678999998765444333  3357889999994555555556678999999887654433322 2457789


Q ss_pred             EEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCcc-
Q 005956          398 CYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGVDV-  473 (667)
Q Consensus       398 ~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s--~dg~I~iwd~~~~-  473 (667)
                      ++.+.+..| ++-...+.|.+.++.+...... +  .    ........|++.|.++ .|+.+.  ..+.|...++... 
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-~--~----~~l~~P~~iavdp~~G-~lY~tD~g~~~~I~r~~~dG~~  157 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-V--W----KDLDSPRALALDPAEG-FMYWTEWGGKPKIDRAAMDGSE  157 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEE-E--C----SSCCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCS
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-E--e----CCCCCcccEEEccCCC-eEEEeCCCCCCEEEEEeCCCCc
Confidence            998765555 4445567899999876543211 1  1    1124568999998643 444444  3567888876522 


Q ss_pred             eeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956          474 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  517 (667)
Q Consensus       474 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~  517 (667)
                      ...+.  ........++++++++.|+.+. ..+.|...+++....
T Consensus       158 ~~~l~--~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          158 RTTLV--PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             CEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             eEEEE--CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            22222  2456788999999887777765 457899999977544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.73  E-value=0.73  Score=48.21  Aligned_cols=205  Identities=12%  Similarity=0.134  Sum_probs=130.0

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEee-----CCCcEEEEEEeeCCCCEEEEEec-------CCeEEE
Q 005956          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------DGKVRI  376 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~-------Dg~v~i  376 (667)
                      ..|.--.|-.+..|+-.+. ..|.-|++.. ..+.+.|.     ....|.....++ +.+.++..+.       .|.+.+
T Consensus       106 e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQL  183 (494)
T 1bpo_A          106 DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQL  183 (494)
T ss_dssp             SCCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEE
Confidence            4576777766665544443 5799999974 45677775     234677777777 7777665442       477889


Q ss_pred             EecCCCeEEEecccCCceEEEEEeeC---CCEEEEEec---CCcEEEEEecCC-----cceeeeEeeccccCcCCCCeEE
Q 005956          377 WGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       377 wdl~~~~~~~~~~~~~~v~~v~~spd---g~~l~~gs~---dg~i~l~d~~~~-----~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      |..+.+....+.+|-.....+.+.-+   .+.++.+..   .+.+++.++...     ........+.-.......--.+
T Consensus       184 YS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva  263 (494)
T 1bpo_A          184 YSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA  263 (494)
T ss_dssp             EESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred             eeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence            99988776666666544433322111   123444443   278999998543     1112222222222233455667


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  517 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~  517 (667)
                      ++.++. ...++.-+.-|.|++||+.+....|...-...+|...+-.....=++.....|.|.--.++....
T Consensus       264 mqvs~k-ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          264 MQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             EEEETT-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             EEeccc-CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            888876 36888899999999999998888887765666776666655555566666788887777766543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.70  E-value=0.57  Score=49.01  Aligned_cols=192  Identities=11%  Similarity=0.113  Sum_probs=120.2

Q ss_pred             ecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC-eEEEeccc----
Q 005956          317 WSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWADV----  390 (667)
Q Consensus       317 ~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~-~~~~~~~~----  390 (667)
                      .+|.. .++--. ..++.|+|+++...++.+.....|.--.|-.  .+.|+..+ +..|+-|++... .+++..+.    
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L  148 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL  148 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchhc
Confidence            35555 333333 6799999999999999999888888888875  55665554 568999999753 33332221    


Q ss_pred             -CCceEEEEEeeCCCEEEEEe-------cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc--CCCeEEEEEe
Q 005956          391 -RDVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITS  460 (667)
Q Consensus       391 -~~~v~~v~~spdg~~l~~gs-------~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp--~g~~~l~~~s  460 (667)
                       ...|..-..+++.++++..+       -.|.+.+|....+..+.    +.++    ......+....  .....+..+.
T Consensus       149 ~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~  220 (494)
T 1bpo_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAV  220 (494)
T ss_dssp             TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE----ECCS----EEEEEEEECTTCSSEEEEEEEEE
T ss_pred             ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch----heee----eeeeEEEecCCCCCCceEEEEEE
Confidence             34577777788999887644       24678899887554332    1111    11111222111  1012233333


Q ss_pred             C---CCcEEEEECCcc---eeeE-----Ee----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956          461 E---DSKLRILDGVDV---IHKF-----KG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       461 ~---dg~I~iwd~~~~---~~~~-----~~----~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                      .   .+.++|.++...   ...|     ..    ........++..|+.-..|+.-..-|.|++||++++.+...
T Consensus       221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence            2   368888886432   1111     10    11245567888999989999999999999999999976443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.69  E-value=0.0042  Score=70.75  Aligned_cols=180  Identities=8%  Similarity=-0.082  Sum_probs=106.4

Q ss_pred             CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE-ecCCeEEEEecCC----CeEEEec-ccCCceEEEEEeeC
Q 005956          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPD  402 (667)
Q Consensus       329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg-s~Dg~v~iwdl~~----~~~~~~~-~~~~~v~~v~~spd  402 (667)
                      .+.|+..++.+......+.....+..++|.+ .+..|+.+ ...+.|+.+++.+    ....... .....+..|++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            3578888888776665555555677899998 55555544 4567899999875    2222222 12234567888865


Q ss_pred             CC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCcceeeEEeC
Q 005956          403 GK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL  480 (667)
Q Consensus       403 g~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~  480 (667)
                      +. ++++-...+.|.++++.+...... +  ..    .......|++.|.++.++++-... +.|.++++..........
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l-~--~~----~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTL-F--RE----QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEE-C--CC----SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEE-E--eC----CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            44 444445567899998875433211 1  10    113456788998754444443233 688887765322221111


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCC
Q 005956          481 PKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC  516 (667)
Q Consensus       481 ~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~  516 (667)
                      ........|+|+|++..|+.+. ..+.|.+++++...
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~  573 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  573 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence            1334567899999876665554 56789999997643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.65  E-value=0.38  Score=53.62  Aligned_cols=182  Identities=8%  Similarity=-0.095  Sum_probs=107.3

Q ss_pred             CCCcEEEEecCCCe--EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE-E-EecccCCceEEEEEeeCC
Q 005956          328 MDKTVRMWQVGCNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-V-DWADVRDVISAICYIPDG  403 (667)
Q Consensus       328 ~Dg~I~iWd~~~~~--~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~-~-~~~~~~~~v~~v~~spdg  403 (667)
                      ....|+..++....  .......-..+..++|++.++.++++-...+.|..+++..... . .....-..+..+++.+.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            34678888887643  3333345567889999994444444444567899999876532 1 222223568899999965


Q ss_pred             CEEE-EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCcceeeEEeC
Q 005956          404 KGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--DSKLRILDGVDVIHKFKGL  480 (667)
Q Consensus       404 ~~l~-~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~--dg~I~iwd~~~~~~~~~~~  480 (667)
                      ..|+ +-...+.|.+.++.+...... +  .    ........|++.|.++ .|+.+..  .+.|...++.-........
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l-~--~----~~l~~P~~Iavdp~~g-~ly~tD~g~~~~I~r~~~dG~~~~~l~~  167 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVL-F--W----QELDQPRAIALDPSSG-FMYWTDWGEVPKIERAGMDGSSRFIIIN  167 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEE-E--C----SSCSCCCCEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEE-E--e----CCCCCCceEEEecCCC-eEEEeccCCCCEEEEEECCCCceEEEEe
Confidence            5554 445678999999986543221 1  1    1124467899998753 4444442  4577777755222211221


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956          481 PKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  517 (667)
Q Consensus       481 ~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~  517 (667)
                      ........++++++++.|+.+. ..+.|...+++....
T Consensus       168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~  205 (619)
T 3s94_A          168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  205 (619)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE
T ss_pred             CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc
Confidence            2455678999999877777664 456899998876543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.57  E-value=0.78  Score=46.47  Aligned_cols=217  Identities=8%  Similarity=0.010  Sum_probs=113.5

Q ss_pred             ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956          309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  383 (667)
Q Consensus       309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~  383 (667)
                      ...+.+|.|.+.+.++.++.++.| +...+.++.-....     ....+..+.|.+  +..++ ++..+.|.. ....++
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~-~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWI-VGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEE-EEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEE-EECCCeEEE-ECCCCC
Confidence            346899999876633335667765 33344443322221     244788999975  34444 455665544 333343


Q ss_pred             EEEe-c---ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          384 VVDW-A---DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       384 ~~~~-~---~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                      .-.. .   .....+..+.+.+++..++++ .+|.+  |...+.......+..     .....+..+.+.+++ .+++++
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~~-----~~~~~~~~~~~~~~~-~~~~~g  180 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALVQ-----EAIGVMRNLNRSPSG-EYVAVS  180 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEEC-----SCCCCEEEEEECTTS-CEEEEE
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEeec-----CCCcceEEEEEcCCC-cEEEEE
Confidence            2221 1   123457788887777666555 45543  333332222222211     112568899999985 555554


Q ss_pred             eCCCcEEE-EEC-CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-----ccCccceeEE
Q 005956          460 SEDSKLRI-LDG-VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-----KNSVRSCEHF  532 (667)
Q Consensus       460 s~dg~I~i-wd~-~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-----~~~~~~~~~f  532 (667)
                       .++.++. .|. ...-.... ......+..+.+++++..++. +.+|.+++++.+.+..-....     .......+.|
T Consensus       181 -~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          181 -SRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             -TTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred             -CCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence             4455444 453 22222222 224567889999999876654 567888877533232111111     1111234456


Q ss_pred             ccCCcEEEEe
Q 005956          533 FSEGVSVAVQ  542 (667)
Q Consensus       533 s~dg~~lav~  542 (667)
                      .+++.++++.
T Consensus       258 ~~~~~~~~~g  267 (327)
T 2xbg_A          258 RTPNEVWLAG  267 (327)
T ss_dssp             SSSSCEEEEE
T ss_pred             cCCCEEEEEe
Confidence            6666666664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.52  E-value=0.038  Score=52.41  Aligned_cols=178  Identities=8%  Similarity=-0.025  Sum_probs=99.5

Q ss_pred             eEEEEeCCCcEEEEecCCCe------EeEEeeC--CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCc
Q 005956          322 YLLSCSMDKTVRMWQVGCNQ------CLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV  393 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~------~~~~~~h--~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~  393 (667)
                      +|+....| +|+.=....+.      ....+..  -..+..++|+| ++.+.++  .+|.++-.+..+.....+......
T Consensus         6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence            56666666 55544443332      2334443  24777999999 8886666  778887777755333322222222


Q ss_pred             --------eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc--CcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          394 --------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK--KTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       394 --------v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~--~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                              ..++.|.|+|.+.++  .||.|.-++-.+......  .....+  ...-..+..|.|.|+| . |.+.. |+
T Consensus        82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~W--l~~a~~vg~~gw~~~~~lff~p~G-~-Lyav~-dg  154 (236)
T 1tl2_A           82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNW--IARATEVGSGGWSGFKFLFFHPNG-Y-LYAVH-GQ  154 (236)
T ss_dssp             EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCH--HHHSEEEECSSGGGEEEEEECTTS-C-EEEEE-TT
T ss_pred             ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCce--eccccEeccCCCCceEEEEECCCc-e-EEEEe-CC
Confidence                    478999999988888  669887776533222111  000000  0001467999999997 4 44444 77


Q ss_pred             cEEEEECC-cc------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          464 KLRILDGV-DV------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       464 ~I~iwd~~-~~------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      .++-.... ..      .....+.........+.|+++|...++.  ++  ++|....
T Consensus       155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~  208 (236)
T 1tl2_A          155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP  208 (236)
T ss_dssp             EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence            75443221 00      1122222233445567799998877666  67  4454433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.50  E-value=0.2  Score=50.05  Aligned_cols=182  Identities=14%  Similarity=0.149  Sum_probs=94.2

Q ss_pred             eEEEEeCC-----CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCC-----eEEEEecCCCeEEEecc
Q 005956          322 YLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDWAD  389 (667)
Q Consensus       322 ~l~s~s~D-----g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~~~~~~~~  389 (667)
                      .++.|+.+     ..+.+||..+.+-...-.  ....-.+++..  ++.+++.|+.++     .+.+||+.+.+-.....
T Consensus        64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~  141 (302)
T 2xn4_A           64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP  141 (302)
T ss_dssp             EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred             EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence            55666644     358889998876544332  11111122222  677888887653     58889998877554332


Q ss_pred             cCCc--eEEEEEeeCCCEEEEEecC-------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          390 VRDV--ISAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       390 ~~~~--v~~v~~spdg~~l~~gs~d-------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                      ....  -.+++. -+++.++.|+.+       ..+.+||+.++...... .+.    ........+.+  + ..+++.|+
T Consensus       142 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG  212 (302)
T 2xn4_A          142 MNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMS----TRRSGAGVGVL--N-NLLYAVGG  212 (302)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEEECC
T ss_pred             CCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCc----cccccccEEEE--C-CEEEEECC
Confidence            2111  112222 367777777653       35888998876554321 111    11111222222  3 36777776


Q ss_pred             CC-----CcEEEEECCcceee-EEeCCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005956          461 ED-----SKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL  515 (667)
Q Consensus       461 ~d-----g~I~iwd~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~Dg-----~I~iWd~~~~  515 (667)
                      .+     ..+.+||..+..-. .........-..++. .+++.++.|+.++     .|.+||..+.
T Consensus       213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            54     46889997643221 111111111111222 3567777777553     3677777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.45  E-value=0.17  Score=50.48  Aligned_cols=182  Identities=10%  Similarity=0.057  Sum_probs=94.6

Q ss_pred             eEEEEeCC-----CcEEEEecCCCe---EeEEee--CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeEEE
Q 005956          322 YLLSCSMD-----KTVRMWQVGCNQ---CLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVD  386 (667)
Q Consensus       322 ~l~s~s~D-----g~I~iWd~~~~~---~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~  386 (667)
                      .++.|+.+     ..+.+||..+++   -...-.  ....-.++...  ++.+++.|+.+     ..+.+||+.+.+-..
T Consensus        65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~  142 (301)
T 2vpj_A           65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM  142 (301)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE
Confidence            56666654     468899988766   333321  11111122222  57777777754     368899998877544


Q ss_pred             ecccCCc-eEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          387 WADVRDV-ISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       387 ~~~~~~~-v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                      ....... ....+..-+++.++.|+.+     ..+.+||+.+....... .+.    ........+.+  + ..+++.|+
T Consensus       143 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~i~v~GG  214 (301)
T 2vpj_A          143 LGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMA----TKRSGAGVALL--N-DHIYVVGG  214 (301)
T ss_dssp             EEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEEECC
T ss_pred             CCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCC----cccccceEEEE--C-CEEEEEeC
Confidence            3221111 1111222367778887754     46889998877554321 111    11111222222  3 36777776


Q ss_pred             CC-----CcEEEEECCcceee-EEeCCCC-CCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCC
Q 005956          461 ED-----SKLRILDGVDVIHK-FKGLPKS-GSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  515 (667)
Q Consensus       461 ~d-----g~I~iwd~~~~~~~-~~~~~~~-~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~  515 (667)
                      .+     ..+.+||..+..-. ....... .....+.  .+++.++.|+.+     ..|.+||..+.
T Consensus       215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            54     46899998743222 1111111 1112222  266777777655     35777777664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.41  E-value=0.31  Score=50.14  Aligned_cols=165  Identities=12%  Similarity=0.011  Sum_probs=96.0

Q ss_pred             cCCeEEEEecCC--CeEEE--ecc-----cCCceEEEEEee--CCC-EEEEEe-c--CCcEEEEEecCCcceeeeE-eec
Q 005956          370 IDGKVRIWGVCE--KRVVD--WAD-----VRDVISAICYIP--DGK-GFIVGS-I--TGTCHFYKASGNDLKLEKV-DFH  433 (667)
Q Consensus       370 ~Dg~v~iwdl~~--~~~~~--~~~-----~~~~v~~v~~sp--dg~-~l~~gs-~--dg~i~l~d~~~~~~~~~~~-~~~  433 (667)
                      .+|.|.++|+.+  .+...  ..+     .......+.+.+  +|. +|+++. .  +..+.+|++.........+ .+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            689999999873  33332  222     224677788877  454 344443 2  4678888887653333322 222


Q ss_pred             cccCcCCCCeEEEEEccCCCeEEEEEe-----------------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC
Q 005956          434 DRKKTSGNKITGIQFSRDESQRIMITS-----------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK  496 (667)
Q Consensus       434 ~~~~~~~~~I~~l~~sp~g~~~l~~~s-----------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~  496 (667)
                      +   ......+.+.+.++| .++++..                 ..|.|+-+|..+......   .-...+.++|+||++
T Consensus       161 g---~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~---~l~~pNGia~spDg~  233 (355)
T 3sre_A          161 H---KLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE---GFDFANGINISPDGK  233 (355)
T ss_dssp             C---TTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEE---EESSEEEEEECTTSS
T ss_pred             c---CCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeec---CCcccCcceECCCCC
Confidence            2   123568899999986 5555543                 125677777643332222   245678999999999


Q ss_pred             EEEEEe-CCCcEEEEEcCCC-Cccc--cccccCccceeEEcc-CCcEEEE
Q 005956          497 HIISIG-DDCRVYVWNYDEL-CFPS--SKQKNSVRSCEHFFS-EGVSVAV  541 (667)
Q Consensus       497 ~l~sgs-~Dg~I~iWd~~~~-~~~~--~~~~~~~~~~~~fs~-dg~~lav  541 (667)
                      +|+.+. ..+.|+.|+++.. ....  .........-+++.+ +|.+.+.
T Consensus       234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          234 YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEE
Confidence            887775 4678999998742 2211  111122233456777 4765553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.29  E-value=0.37  Score=48.09  Aligned_cols=180  Identities=8%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             eEEEEeCC----CcEEEEecCCCeEeEEee--CCC-cEEEEEEeeCCCCEEEEEecC------CeEEEEecCCCeEEEec
Q 005956          322 YLLSCSMD----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWA  388 (667)
Q Consensus       322 ~l~s~s~D----g~I~iWd~~~~~~~~~~~--h~~-~V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~~~~~~~  388 (667)
                      .++.|+.+    ..+.+||..+++-...-.  ... ....+.+   ++.+++.|+.+      ..+.+||+.+.+-....
T Consensus        58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            56666654    568889998876544332  111 1122222   67788888765      45899999988755432


Q ss_pred             ccCC--ceEEEEEeeCCCEEEEEec---------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          389 DVRD--VISAICYIPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       389 ~~~~--~v~~v~~spdg~~l~~gs~---------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      ....  .-.+++ .-+++.++.|+.         ...+.+||+.+....... .+.    ........+.+  + ..+++
T Consensus       135 ~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~i~v  205 (306)
T 3ii7_A          135 SMLTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMI----EARKNHGLVFV--K-DKIFA  205 (306)
T ss_dssp             CCSSCCBSCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEE
T ss_pred             CCcCCcceeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC-Ccc----chhhcceEEEE--C-CEEEE
Confidence            2211  111222 236777777764         345889998877554321 111    11111222222  3 36677


Q ss_pred             EEeCC-----CcEEEEECCcceee-EEeCCC-CCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCC
Q 005956          458 ITSED-----SKLRILDGVDVIHK-FKGLPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  515 (667)
Q Consensus       458 ~~s~d-----g~I~iwd~~~~~~~-~~~~~~-~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~  515 (667)
                      .|+.+     ..+.+||..+..-. ...... ......+.+  +++.++.|+.+     ..|.+||..+.
T Consensus       206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            76643     46888997643211 111111 111222333  67777778754     45777777664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.26  E-value=2  Score=48.88  Aligned_cols=193  Identities=13%  Similarity=0.160  Sum_probs=113.7

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec
Q 005956          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  388 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~  388 (667)
                      ..|.++.-..++.|..++.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ -|..||..+++...+.
T Consensus        63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~  137 (758)
T 3ott_A           63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSFD  137 (758)
T ss_dssp             SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred             ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence            458888777778777777665 7889988765433111 2335777654 3 44 55566665 6888998877765441


Q ss_pred             -----ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          389 -----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       389 -----~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                           .....|.++....+|.. .+|+..| +..|+..+.....  +............|.++...+++ ..|.+++. +
T Consensus       138 ~~~~~l~~~~i~~i~~d~~g~l-Wigt~~G-l~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~  211 (758)
T 3ott_A          138 TRRNGLPNNTIYSIIRTKDNQI-YVGTYNG-LCRYIPSNGKFEG--IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-G  211 (758)
T ss_dssp             HHHHCCSCSCEEEEEECTTCCE-EEEETTE-EEEEETTTTEEEE--ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-E
T ss_pred             cCCCCcCCCeEEEEEEcCCCCE-EEEeCCC-HhhCccCCCceEE--ecCCCccccccceeEEEEEECCC-CEEEEEEC-C
Confidence                 12345788887777754 4466554 6677776554321  11111111112458888877664 34444443 4


Q ss_pred             cEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          464 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       464 ~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      -+..+|.... ...+... ....|.++....+|.+.+.. .+ -+.+++..+..
T Consensus       212 Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~  262 (758)
T 3ott_A          212 YLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTP  262 (758)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSC
T ss_pred             CCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCc
Confidence            5888886532 2222211 23457788888888766544 44 58888877654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.15  E-value=0.56  Score=47.06  Aligned_cols=132  Identities=8%  Similarity=0.018  Sum_probs=70.0

Q ss_pred             EEEEecCCCeEeEEeeCCCcE--EEEEEeeCCCCEEEEEecC--------CeEEEEecCCCeEEEecccCCc-eEEEEEe
Q 005956          332 VRMWQVGCNQCLNVFDHHNYV--TCVQFNPIDDNYFISGSID--------GKVRIWGVCEKRVVDWADVRDV-ISAICYI  400 (667)
Q Consensus       332 I~iWd~~~~~~~~~~~h~~~V--~~l~f~p~d~~~l~sgs~D--------g~v~iwdl~~~~~~~~~~~~~~-v~~v~~s  400 (667)
                      +.+||..+++-...-....+-  .+++..  ++.+++.|+.+        ..+.+||+.+.+-......... ....+..
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  146 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS  146 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence            778888877653322211111  122222  56777777743        4589999998875543322111 1111222


Q ss_pred             eCCCEEEEEec-C-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC-----cEEEEE
Q 005956          401 PDGKGFIVGSI-T-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRILD  469 (667)
Q Consensus       401 pdg~~l~~gs~-d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg-----~I~iwd  469 (667)
                      -+++.++.|+. +     ..+.+||..+....... .+.    ........+.+  + ..+++.|+.++     .+.+||
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd  218 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQ----TARSLFGATVH--D-GRIIVAAGVTDTGLTSSAEVYS  218 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCS----SCCBSCEEEEE--T-TEEEEEEEECSSSEEEEEEEEE
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCC----CchhceEEEEE--C-CEEEEEeccCCCCccceEEEEE
Confidence            56777788776 2     46889998877554321 111    11111222222  3 36777777654     588888


Q ss_pred             CCcc
Q 005956          470 GVDV  473 (667)
Q Consensus       470 ~~~~  473 (667)
                      ..+.
T Consensus       219 ~~~~  222 (315)
T 4asc_A          219 ITDN  222 (315)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            7643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.06  E-value=3.8  Score=49.09  Aligned_cols=223  Identities=9%  Similarity=0.054  Sum_probs=124.4

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeE--EeeCCCcEEEEEEeeCC-----CCEEEEEec-CCeEEEEecCCC
Q 005956          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPID-----DNYFISGSI-DGKVRIWGVCEK  382 (667)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~--~~~h~~~V~~l~f~p~d-----~~~l~sgs~-Dg~v~iwdl~~~  382 (667)
                      .|...+.+. ..++.++ .+.+.++.+..++...  .......|.|+++.|..     ..+++.|.. |++|+|+++.+.
T Consensus       515 ~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          515 NISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             CCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence            566666543 3444444 5778888887654322  22356789999998632     478999996 999999999987


Q ss_pred             eEEEeccc--CCceEEEEEee--CCCEEEEEecCCcEEEEEecC--CcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          383 RVVDWADV--RDVISAICYIP--DGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       383 ~~~~~~~~--~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~--~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                      +.+.....  ...+.++++..  ...+|.+|-.||.+..+.+..  +.+.......-+.     .++.-..+...|...+
T Consensus       593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-----~pv~L~~~~~~~~~~V  667 (1158)
T 3ei3_A          593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT-----QPTVLRTFRSLSTTNV  667 (1158)
T ss_dssp             CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-----SCCEEEEEESSSCEEE
T ss_pred             CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-----CceEEEEEeeCCceeE
Confidence            66543333  23455665543  235788899999987776653  3332222122221     3454444544444445


Q ss_pred             EEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCCcc--ccccccCccceeEE
Q 005956          457 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG--KHIISIGDDCRVYVWNYDELCFP--SSKQKNSVRSCEHF  532 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg--~~l~sgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~~f  532 (667)
                      ++.+. .-..++-.... ..+........-....|+...  .-++..+ ++.++|..+++....  ...........+++
T Consensus       668 ~a~s~-rp~liy~~~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y  744 (1158)
T 3ei3_A          668 FACSD-RPTVIYSSNHK-LVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICY  744 (1158)
T ss_dssp             EEESS-SCEEEEESSSS-EEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEE
T ss_pred             EEECC-CCEEEEEcCCc-eEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEE
Confidence            55543 33333432222 223322122222344464321  3344444 456999988654321  11234445566789


Q ss_pred             ccCCcEEEEec
Q 005956          533 FSEGVSVAVQW  543 (667)
Q Consensus       533 s~dg~~lav~w  543 (667)
                      +|+...+++..
T Consensus       745 ~~~~~~~~v~~  755 (1158)
T 3ei3_A          745 QEVSQCFGVLS  755 (1158)
T ss_dssp             EGGGTEEEEEE
T ss_pred             cCCCCEEEEEE
Confidence            99888776643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.01  E-value=1.6  Score=44.52  Aligned_cols=244  Identities=11%  Similarity=0.039  Sum_probs=123.1

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      +++...-..-+.|+|.|||++|++--..|.|++++...+....+..                                  
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~----------------------------------   70 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE----------------------------------   70 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----------------------------------
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc----------------------------------
Confidence            3444445567899999999988877658888888654322111000                                  


Q ss_pred             cccCCcceeeeccccceEEEEecCC----CeEEEE---eCCCcEEEEecCCC----------eEe-EEee--CCCcEEEE
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNS----NYLLSC---SMDKTVRMWQVGCN----------QCL-NVFD--HHNYVTCV  355 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~----~~l~s~---s~Dg~I~iWd~~~~----------~~~-~~~~--h~~~V~~l  355 (667)
                          .+ ..+.........|+++|+    +.|+..   ..+..|.-|.+..+          +.+ ..+.  .......|
T Consensus        71 ----~~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l  145 (347)
T 3das_A           71 ----VP-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRI  145 (347)
T ss_dssp             ----CT-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCE
T ss_pred             ----cC-ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccc
Confidence                00 011223456789999985    544332   23445555655431          111 1122  12234579


Q ss_pred             EEeeCCCCEEEEEec-------------CCeEEEEecCCC---------eEEEecccCCceEEEEEeeCCCEEEEEe-cC
Q 005956          356 QFNPIDDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIPDGKGFIVGS-IT  412 (667)
Q Consensus       356 ~f~p~d~~~l~sgs~-------------Dg~v~iwdl~~~---------~~~~~~~~~~~v~~v~~spdg~~l~~gs-~d  412 (667)
                      .|.| ++.++++.+.             .|+|.-++....         ..+....+ .....++|+|+|..+++=. .+
T Consensus       146 ~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~  223 (347)
T 3das_A          146 AFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQD  223 (347)
T ss_dssp             EECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSS
T ss_pred             cCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCC
Confidence            9999 8887777542             355555555432         11122233 2356789999887655522 23


Q ss_pred             CcEEEEEecCCcceee-eEeec----cc------cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce---e-eE
Q 005956          413 GTCHFYKASGNDLKLE-KVDFH----DR------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---H-KF  477 (667)
Q Consensus       413 g~i~l~d~~~~~~~~~-~~~~~----~~------~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~---~-~~  477 (667)
                      +.-.|.-+..+..--. .....    +.      ...+......++|.. | ..++..-..+.|....+....   . ..
T Consensus       224 ~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~  301 (347)
T 3das_A          224 TWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQA  301 (347)
T ss_dssp             SCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEE
T ss_pred             CCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEE
Confidence            3233333322211000 00000    00      000112456777774 2 455555555666655543211   0 11


Q ss_pred             EeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956          478 KGLPKSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       478 ~~~~~~~~v~~v~~spdg~~l~sgs  502 (667)
                      ........+..++..|||.++++.+
T Consensus       302 ~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          302 FLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             ESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             eecCCCCCccEEEECCCCcEEEEEc
Confidence            1112346788899999987666544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.98  E-value=2.1  Score=45.57  Aligned_cols=31  Identities=13%  Similarity=0.110  Sum_probs=22.3

Q ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 005956          222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT  252 (667)
Q Consensus       222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~  252 (667)
                      -..-+.|+|.|+|+++++-...+.|++++..
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~   56 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPE   56 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence            4457899999999977775444467776644

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.82  E-value=3.5  Score=46.87  Aligned_cols=190  Identities=11%  Similarity=0.061  Sum_probs=106.5

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEecCC------CeEe--EEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGC------NQCL--NVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~------~~~~--~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      ..|.++...+++.|..|+..+-|.++|..+      ....  ..+.     ....|.++...+ ++++.+.++..+-|..
T Consensus       419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~  497 (758)
T 3ott_A          419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK  497 (758)
T ss_dssp             SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred             ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence            457888877788777788777788888643      1111  1221     234588888877 7776664444455888


Q ss_pred             EecCCCeEEEeccc----CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          377 WGVCEKRVVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       377 wdl~~~~~~~~~~~----~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      +|..+++.......    ...+.++....+|... +|+..| +..|+..+......  ...+   -....|.++... +|
T Consensus       498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~~~--~~~g---l~~~~i~~i~~~-~g  569 (758)
T 3ott_A          498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLW-VGFHGG-VMRINPKDESQQSI--SFGS---FSNNEILSMTCV-KN  569 (758)
T ss_dssp             EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE-EEETTE-EEEECC--CCCCBC--CCCC------CCEEEEEEE-TT
T ss_pred             EeCCCCceEEecCCCcCCCcccceEEECCCCCEE-EEecCc-eEEEecCCCceEEe--cccC---CCccceEEEEEC-CC
Confidence            99988877654321    2457788877777554 556554 77787765543321  1111   112567888764 54


Q ss_pred             CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCC
Q 005956          453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT-TTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s-pdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                        .|..++..| |..+|..+.....-.. ....+..+.+. ++| .|..|+.+| +..++.+.
T Consensus       570 --~lWi~t~~G-l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G-~l~fG~~~G-l~~f~p~~  626 (758)
T 3ott_A          570 --SIWVSTTNG-LWIIDRKTMDARQQNM-TNKRFTSLLFDPKED-CVYLGGADG-FGISHSNL  626 (758)
T ss_dssp             --EEEEEESSC-EEEEETTTCCEEEC---CCCCCSEEEEETTTT-EEEEECBSE-EEEEEC--
T ss_pred             --CEEEECCCC-eEEEcCCCceeEEecC-CCCceeeeEEECCCC-cEEEecCCc-eEEEChhh
Confidence              455555555 7778876432221111 11223344443 455 566667777 45556553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.58  E-value=0.52  Score=47.17  Aligned_cols=172  Identities=12%  Similarity=0.073  Sum_probs=88.1

Q ss_pred             CcEEEEecCCCeEeEEee--C-CCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeEEEecccC---CceEEEE
Q 005956          330 KTVRMWQVGCNQCLNVFD--H-HNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVR---DVISAIC  398 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~--h-~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~~~~~~---~~v~~v~  398 (667)
                      ..+.+||..+.+-...-.  . ......+.+   ++.+++.|+.+     ..+.+||+.+.+-.......   ....++.
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  166 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV  166 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence            468889988776443322  1 111222222   56777777644     35889999887755433221   1122222


Q ss_pred             EeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEE
Q 005956          399 YIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRIL  468 (667)
Q Consensus       399 ~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-----g~I~iw  468 (667)
                        -+++.++.|+.+     ..+.+||+.+....... .+.    ........+.+  + ..+++.|+.+     ..+.+|
T Consensus       167 --~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          167 --LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT-AMN----TIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             --ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC-CCS----SCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEE
T ss_pred             --ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC-CCC----CccccceEEEE--C-CEEEEEeCCCCCCccceEEEE
Confidence              267777777764     45889998876554321 011    11112222333  3 3677777654     568999


Q ss_pred             ECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCC
Q 005956          469 DGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  515 (667)
Q Consensus       469 d~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~  515 (667)
                      |+.+..-... .......-.+++. -+++.++.|+.+     ..|.+||..+.
T Consensus       237 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          237 DVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            9764322111 1111111112222 256677777644     24566666543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.52  E-value=0.18  Score=52.56  Aligned_cols=141  Identities=13%  Similarity=0.162  Sum_probs=91.6

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCC-----CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe-------------
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHH-----NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-------------  383 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~-----~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~-------------  383 (667)
                      .++.+- ++.||.-++.....-+.+...     ..|..+..+| +|++|+..+ +..|.|..+..+.             
T Consensus        34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q  110 (452)
T 3pbp_A           34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ  110 (452)
T ss_dssp             EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred             EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence            444333 378888888744444444322     2578899999 999998876 5689998887321             


Q ss_pred             E--EEecc----cCCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcceeeeEeecccc-----CcCCCCeEEEEEc
Q 005956          384 V--VDWAD----VRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-----KTSGNKITGIQFS  449 (667)
Q Consensus       384 ~--~~~~~----~~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~-----~~~~~~I~~l~~s  449 (667)
                      +  .....    ....|..+.|+|   .+..|++-+.|+.|++||+........  .+....     ......|.+++|.
T Consensus       111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--~L~k~~~~fg~d~~~~ev~S~~Fg  188 (452)
T 3pbp_A          111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--VLNKPNNSFGLDARVNDITDLEFS  188 (452)
T ss_dssp             EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE--EESCCCSEEESCSSCCCEEEEEEC
T ss_pred             eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc--chhccccccCCCcccceEEEEEEc
Confidence            1  11111    246799999999   456899999999999999986322111  221111     1122678999999


Q ss_pred             cCCCeEEEEEe--CCCcEEEE
Q 005956          450 RDESQRIMITS--EDSKLRIL  468 (667)
Q Consensus       450 p~g~~~l~~~s--~dg~I~iw  468 (667)
                      +++ -.|.+.+  .+|.|+-.
T Consensus       189 ~~~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          189 KDG-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TTS-SCEEEEECTTSCEEEEE
T ss_pred             CCC-cEEEEEecCCCCCEEEE
Confidence            975 5555544  77888764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.30  E-value=1.5  Score=43.84  Aligned_cols=187  Identities=10%  Similarity=0.013  Sum_probs=102.7

Q ss_pred             CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC--------------CeEEEEecCCCeEEEecccCCce
Q 005956          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVVDWADVRDVI  394 (667)
Q Consensus       329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D--------------g~v~iwdl~~~~~~~~~~~~~~v  394 (667)
                      ++.|...+.+.....+....    .+--+++ +++.|+.+...              ..|+..++...+...+....   
T Consensus        36 ~~~ly~~~~dg~~~~~l~~~----~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~---  107 (302)
T 3s25_A           36 NGRLYAMNIDGSNIHKLSND----TAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP---  107 (302)
T ss_dssp             TTEEEEEETTSCSCEEEEEE----EEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---
T ss_pred             CceEEEEcCCCCCCEEccCC----ceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---
Confidence            45566666654443333221    1345577 77777776543              36788888877644433322   


Q ss_pred             EEEEEeeCCCEEEEEe--cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956          395 SAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       395 ~~v~~spdg~~l~~gs--~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                       +..++++++.|+...  .++.-.||.+.......+.+.-.        .+  ..+++++..+..+......|.+.++..
T Consensus       108 -~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g  176 (302)
T 3s25_A          108 -CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--------YL--FTCNTSDRYFYYNNPKNGQLYRYDTAS  176 (302)
T ss_dssp             -EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--------CC--CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred             -ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--------Cc--eEeeEECCEEEEEeCCCceEEEEECCC
Confidence             236788999988876  34555555444322222222211        11  345677644444544467888888764


Q ss_pred             ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEe
Q 005956          473 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDD--CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       473 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D--g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~  542 (667)
                      ...+....   +... ..++|++.+|+-...+  ..|..-++++..........    ...|+|++..|..+
T Consensus       177 ~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~----~~~~~~~g~~Iy~~  240 (302)
T 3s25_A          177 QSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN----IEHYNVYGSLIFYQ  240 (302)
T ss_dssp             TEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC----EEEEEEETTEEEEE
T ss_pred             CCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC----cceEEECCCEEEEE
Confidence            33222221   1222 3456999999876644  35666677766543332211    24588889888654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.23  E-value=1.5  Score=43.92  Aligned_cols=131  Identities=9%  Similarity=0.058  Sum_probs=68.7

Q ss_pred             EEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC-------CeEEEEecCCCeEEEecccCCc-eEEEEEee
Q 005956          332 VRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-------GKVRIWGVCEKRVVDWADVRDV-ISAICYIP  401 (667)
Q Consensus       332 I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D-------g~v~iwdl~~~~~~~~~~~~~~-v~~v~~sp  401 (667)
                      +.+||..+++-...-.  ....-.+++..  ++.+++.|+.+       ..+.+||+.+.+-......... ....+...
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  157 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH  157 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence            7788888776543322  11111122222  57788888764       3588899988775543322211 11112225


Q ss_pred             CCCEEEEEecC------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEEC
Q 005956          402 DGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILDG  470 (667)
Q Consensus       402 dg~~l~~gs~d------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-----g~I~iwd~  470 (667)
                      +++.++.|+.+      ..+.+||+.+....... .+.    ........+.+  + ..+++.|+.+     ..+.+||.
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~  229 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMK----TPRSMFGVAIH--K-GKIVIAGGVTEDGLSASVEAFDL  229 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEEEEEEETTEEEEEEEEEET
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCC----CCcccceEEEE--C-CEEEEEcCcCCCCccceEEEEEC
Confidence            67777777642      35889999877654321 111    11111222222  3 3677777643     35778887


Q ss_pred             Cc
Q 005956          471 VD  472 (667)
Q Consensus       471 ~~  472 (667)
                      .+
T Consensus       230 ~~  231 (318)
T 2woz_A          230 KT  231 (318)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.14  E-value=0.98  Score=44.75  Aligned_cols=173  Identities=10%  Similarity=0.047  Sum_probs=91.3

Q ss_pred             CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCe---EEEeccc---CCceEE
Q 005956          330 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR---VVDWADV---RDVISA  396 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~---~~~~~~~---~~~v~~  396 (667)
                      ..+.+||..+++-...-.  ....-.++.. . ++.+++.|+.+     ..+.+||+.+.+   -......   .....+
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            368889988776443322  1111112222 2 67788888765     468999998876   4332221   111222


Q ss_pred             EEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-----CcEE
Q 005956          397 ICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLR  466 (667)
Q Consensus       397 v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-----g~I~  466 (667)
                      +.  .+++.++.|+.+     ..+.+||..+....... .+...    ......+.+  + +.+++.|+.+     ..+.
T Consensus       109 ~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~  178 (301)
T 2vpj_A          109 TT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQTA----REGAGLVVA--S-GVIYCLGGYDGLNILNSVE  178 (301)
T ss_dssp             EE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECSSC----CBSCEEEEE--T-TEEEEECCBCSSCBCCCEE
T ss_pred             EE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-CCCCC----cccceEEEE--C-CEEEEECCCCCCcccceEE
Confidence            22  367777777754     35888998876654321 11110    111122222  3 3677777654     4688


Q ss_pred             EEECCcceeeEEe-CCCC-CCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956          467 ILDGVDVIHKFKG-LPKS-GSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  516 (667)
Q Consensus       467 iwd~~~~~~~~~~-~~~~-~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~  516 (667)
                      +||..+..-.... .... .....+.  .+++.++.|+.+     ..|.+||+.+..
T Consensus       179 ~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          179 KYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            9997643222111 1111 1112222  256777777764     468999988764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.92  E-value=1.1  Score=47.66  Aligned_cols=110  Identities=10%  Similarity=0.105  Sum_probs=61.9

Q ss_pred             CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec---c------cCCceEEEEEeeC---CCEEEEEec-----
Q 005956          349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA---D------VRDVISAICYIPD---GKGFIVGSI-----  411 (667)
Q Consensus       349 ~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~---~------~~~~v~~v~~spd---g~~l~~gs~-----  411 (667)
                      -...+.|+|.| +++++++-...+.|++++..+++...+.   .      ....+..|+|+|+   +..|.+...     
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            34678999999 8887666443357988887655433211   1      2345779999995   555555443     


Q ss_pred             --------CCcEEEEEecCCccee--eeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          412 --------TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       412 --------dg~i~l~d~~~~~~~~--~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                              ...|.-|+........  ....+.............|+|.||| .++++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                    2356666654332111  1111111111122457899999998 4444433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.75  E-value=0.55  Score=44.48  Aligned_cols=168  Identities=12%  Similarity=-0.059  Sum_probs=92.4

Q ss_pred             CCEEEEEecCCeEEEEecCCCeEE------Eeccc--CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee-----e
Q 005956          362 DNYFISGSIDGKVRIWGVCEKRVV------DWADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----E  428 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~~~------~~~~~--~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~-----~  428 (667)
                      +.+|+....| +|+.=....+..-      .....  =..+..++|+|+|.+.++  .+|.+.-.+..+.....     .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3455556666 6555544443311      11111  236789999999997777  77776555543322111     0


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-------eeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------IHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-------~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      .+.-.+-     .....+.|.|+| .+.++  .||.|+-++..+.       .....+...-..+..+.|.|+|.+.+..
T Consensus        81 ~IG~~Gw-----~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           81 KIGNGGW-----NQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             EEECSCG-----GGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             Eeccccc-----ccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            1100010     114788999997 44444  5699988875320       1112222234567899999999877766


Q ss_pred             eCCCcEEEEEcCCCCc-ccc------c-cccCccceeEEccCCcEEEEe
Q 005956          502 GDDCRVYVWNYDELCF-PSS------K-QKNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       502 s~Dg~I~iWd~~~~~~-~~~------~-~~~~~~~~~~fs~dg~~lav~  542 (667)
                        |+.++-+....... ...      . ..-.....+.|.++|.+.++.
T Consensus       153 --dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          153 --GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             --TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             --CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence              77765433332211 000      1 111234456799999999997

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.64  E-value=2  Score=42.43  Aligned_cols=175  Identities=13%  Similarity=0.140  Sum_probs=90.2

Q ss_pred             CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeEEEecccCCc--eEEEEEe
Q 005956          330 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICYI  400 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~~~~~~~~--v~~v~~s  400 (667)
                      ..+.+||+.+.+-...-.  ....-.+++..  ++.+++.|+.+     ..+.+||..+.+-.........  -.+++ .
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-V  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-E
Confidence            357888888776443321  11111122222  67778887755     3588999988875543322111  11222 2


Q ss_pred             eCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-------CcEEEE
Q 005956          401 PDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-------SKLRIL  468 (667)
Q Consensus       401 pdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-------g~I~iw  468 (667)
                      -+++.+++|+.++     .+.+||+.+....... .+.    ........+.+  + ..+++.|+.+       ..+.+|
T Consensus       107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~y  178 (302)
T 2xn4_A          107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMN----TRRSSVGVGVV--G-GLLYAVGGYDVASRQCLSTVECY  178 (302)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEEECCEETTTTEECCCEEEE
T ss_pred             ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCC----CcccCceEEEE--C-CEEEEEeCCCCCCCccccEEEEE
Confidence            3677888887654     5778888776554321 111    11111222222  3 3566666542       458889


Q ss_pred             ECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956          469 DGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  516 (667)
Q Consensus       469 d~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~  516 (667)
                      |..+..-... .......-.+++. -++++++.|+.+     ..+.+||..+..
T Consensus       179 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          179 NATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             eCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            9764322211 1111111112222 257777777754     368899987754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.62  E-value=3.8  Score=40.86  Aligned_cols=162  Identities=7%  Similarity=0.009  Sum_probs=89.9

Q ss_pred             CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe----cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCE
Q 005956          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG  405 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs----~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~  405 (667)
                      ..|+..++...+........    +..|++ +++.|+...    ....|+..++.......+..+..    ..++|+|+.
T Consensus        88 ~~Iy~i~~dg~~~~~l~~~~----~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~  158 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDPDP----CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY  158 (302)
T ss_dssp             EEEEEEETTSCCCEEEECSC----EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred             CeEEEEeCCCCcceEeecCC----ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence            46777777766543333222    236777 777777665    34456667777655544444332    456888988


Q ss_pred             EEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCcce-eeEEeCCC
Q 005956          406 FIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVI-HKFKGLPK  482 (667)
Q Consensus       406 l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd~~~~~-~~~~~~~~  482 (667)
                      |...+. ...|...++.+....  .+ ..       +... ..+.|+++.++.+...+ ..|..-++.... ..+.    
T Consensus       159 iy~t~~g~~~Iy~~~l~g~~~~--~l-~~-------~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt----  223 (302)
T 3s25_A          159 FYYNNPKNGQLYRYDTASQSEA--LF-YD-------CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT----  223 (302)
T ss_dssp             EEEECTTTCCEEEEETTTTEEE--EE-EC-------SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS----
T ss_pred             EEEEeCCCceEEEEECCCCCEE--EE-eC-------CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe----
Confidence            887665 567777777654432  12 11       1122 23568864444443333 355555554221 2221    


Q ss_pred             CCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCc
Q 005956          483 SGSQMSASFTTTGKHIISIGD--DCRVYVWNYDELCF  517 (667)
Q Consensus       483 ~~~v~~v~~spdg~~l~sgs~--Dg~I~iWd~~~~~~  517 (667)
                      ...+  ..|+|++++|+-++.  .+.|..-+++....
T Consensus       224 ~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r  258 (302)
T 3s25_A          224 EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF  258 (302)
T ss_dssp             CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC
T ss_pred             CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc
Confidence            2223  347888999886632  35677777776543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.49  E-value=2  Score=42.50  Aligned_cols=181  Identities=10%  Similarity=0.087  Sum_probs=96.0

Q ss_pred             eEEEEeC--CCcEEEEecCCCeEeEEee--C-CCcEEEEEEeeCCCCEEEEEecC----CeEEEEecCCCeEEEecccC-
Q 005956          322 YLLSCSM--DKTVRMWQVGCNQCLNVFD--H-HNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADVR-  391 (667)
Q Consensus       322 ~l~s~s~--Dg~I~iWd~~~~~~~~~~~--h-~~~V~~l~f~p~d~~~l~sgs~D----g~v~iwdl~~~~~~~~~~~~-  391 (667)
                      .++.|+.  ...+.+||..+++-...-.  . ......+.+   ++.+++.|+.+    ..+.+||+.+.+-....... 
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            4555554  3578899998876543321  1 112222222   67788888765    67899999988755432221 


Q ss_pred             --CceEEEEEeeCCCEEEEEecC------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC--
Q 005956          392 --DVISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--  461 (667)
Q Consensus       392 --~~v~~v~~spdg~~l~~gs~d------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~--  461 (667)
                        ....++  .-+++.++.|+.+      ..+.+||..+....... .+..    .......+.+  ++ .+++.|+.  
T Consensus        91 ~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~----~r~~~~~~~~--~~-~iyv~GG~~~  160 (306)
T 3ii7_A           91 PRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP-SMLT----QRCSHGMVEA--NG-LIYVCGGSLG  160 (306)
T ss_dssp             CCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC-CCSS----CCBSCEEEEE--TT-EEEEECCEES
T ss_pred             cccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC-CCcC----CcceeEEEEE--CC-EEEEECCCCC
Confidence              112222  2367777888765      46889998877653320 1111    1111122222  33 56666653  


Q ss_pred             -------CCcEEEEECCcceee-EEeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956          462 -------DSKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  516 (667)
Q Consensus       462 -------dg~I~iwd~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~  516 (667)
                             -..+.+||..+..-. .........-.+++. -+++.++.|+.+     ..|.+||..+..
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence                   345889997643221 111111111112222 266777777653     368899988763

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.23  E-value=0.91  Score=46.60  Aligned_cols=152  Identities=13%  Similarity=0.101  Sum_probs=78.6

Q ss_pred             CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC---CCeEEEEEeC-------
Q 005956          392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSE-------  461 (667)
Q Consensus       392 ~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~---g~~~l~~~s~-------  461 (667)
                      .....++|.|+|+.|+++...|.|++++... ........+.............|+++|+   ++.+.++-+.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            4578899999998455666789999988532 2111000010001112345789999995   4344444332       


Q ss_pred             CCcEEEEECCc-------ceeeEEeCC----CCCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCCc
Q 005956          462 DSKLRILDGVD-------VIHKFKGLP----KSGSQMSASFTTTGKHIISIGDD-------------CRVYVWNYDELCF  517 (667)
Q Consensus       462 dg~I~iwd~~~-------~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~D-------------g~I~iWd~~~~~~  517 (667)
                      ...|..|+...       ....+....    .......++|.|||.+.++.+..             |.|.-++.+..-.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            23566565431       111222221    11224579999999666655432             4566666553210


Q ss_pred             ------------ccc-ccccCccceeEEcc-CCcEEEEecC
Q 005956          518 ------------PSS-KQKNSVRSCEHFFS-EGVSVAVQWP  544 (667)
Q Consensus       518 ------------~~~-~~~~~~~~~~~fs~-dg~~lav~w~  544 (667)
                                  ... ........-++|.| +|.+.+..-.
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g  217 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG  217 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence                        000 00111233468898 6777766544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.21  E-value=12  Score=44.61  Aligned_cols=182  Identities=14%  Similarity=0.085  Sum_probs=93.8

Q ss_pred             cccEEEEEEcCC------CCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          222 KGCIWTLKFSPD------GRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       222 ~~~I~~v~fspd------g~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++.+.......-                                 
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~---------------------------------  599 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM---------------------------------  599 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE---------------------------------
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE---------------------------------
Confidence            457999999864      369999997 9999999998643321110                                 


Q ss_pred             ccccCCcceeeec--cccceEEEEecCCC-eEEEEeCCCcEEEEec--CCCeEeEE---eeCCCcEEEEEEeeCCCCEEE
Q 005956          295 FQIEESPLQELHG--HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV--GCNQCLNV---FDHHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       295 ~~~~~~~~~~l~g--h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~--~~~~~~~~---~~h~~~V~~l~f~p~d~~~l~  366 (667)
                                +.+  -...|.-+.+ ... +|..|-.||.+.-+.+  .++.....   +-...++.-..|.. .+..-+
T Consensus       600 ----------L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~-~~~~~V  667 (1158)
T 3ei3_A          600 ----------LGGEIIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRS-LSTTNV  667 (1158)
T ss_dssp             ----------CCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEES-SSCEEE
T ss_pred             ----------CCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEee-CCceeE
Confidence                      000  0111222233 223 7888888998766554  34544322   11344555444543 333333


Q ss_pred             EEecCCeEEEEecCCCeEEE-ecccCCceEE-EEEeeC--CCEEEEEecCCcEEEEEecCCc-ceeeeEeeccccCcCCC
Q 005956          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISA-ICYIPD--GKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~-v~~spd--g~~l~~gs~dg~i~l~d~~~~~-~~~~~~~~~~~~~~~~~  441 (667)
                      .+..+.-..+|--. ++... -.... .+.. ..|+..  ...++..+ ++.++|..+.... +....+.+       ..
T Consensus       668 ~a~s~rp~liy~~~-~~l~~s~l~~~-~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL-------~~  737 (1158)
T 3ei3_A          668 FACSDRPTVIYSSN-HKLVFSNVNLK-EVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL-------YE  737 (1158)
T ss_dssp             EEESSSCEEEEESS-SSEEEEEBSSS-CCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC-------SS
T ss_pred             EEECCCCEEEEEcC-CceEEeccChH-HhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC-------CC
Confidence            33334444445433 33322 11222 2333 334332  24555444 5569998885432 22223333       25


Q ss_pred             CeEEEEEccCCCeEEEE
Q 005956          442 KITGIQFSRDESQRIMI  458 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~  458 (667)
                      .+..++++|....+++.
T Consensus       738 Tprri~y~~~~~~~~v~  754 (1158)
T 3ei3_A          738 SPRKICYQEVSQCFGVL  754 (1158)
T ss_dssp             EEEEEEEEGGGTEEEEE
T ss_pred             CceEEEEcCCCCEEEEE
Confidence            67888888875334333

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.13  E-value=1.8  Score=43.10  Aligned_cols=181  Identities=9%  Similarity=0.023  Sum_probs=95.0

Q ss_pred             eEEEEeCC----CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEec----C-----CeEEEEecCCCeEEE
Q 005956          322 YLLSCSMD----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSI----D-----GKVRIWGVCEKRVVD  386 (667)
Q Consensus       322 ~l~s~s~D----g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~----D-----g~v~iwdl~~~~~~~  386 (667)
                      .++.|+.+    ..+.+||..+++-...-.  ....-.+++..  ++.+++.|+.    +     ..+.+||+.+.+-..
T Consensus        27 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~  104 (308)
T 1zgk_A           27 IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP  104 (308)
T ss_dssp             EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred             EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE
Confidence            55555532    368889988776544321  11111122222  5677777775    2     468899998887554


Q ss_pred             ecccC---CceEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          387 WADVR---DVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       387 ~~~~~---~~v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      .....   ....++.  -+++.+++|+.+     ..+.+||..+....... .+.    ........+.+  + ..+++.
T Consensus       105 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~  174 (308)
T 1zgk_A          105 CAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PML----TRRIGVGVAVL--N-RLLYAV  174 (308)
T ss_dssp             CCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCS----SCCBSCEEEEE--T-TEEEEE
T ss_pred             CCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCC----ccccceEEEEE--C-CEEEEE
Confidence            33221   1122222  367777777654     36788998876554321 111    11111222233  3 367777


Q ss_pred             EeCC-----CcEEEEECCcceeeEEe-CCC-CCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956          459 TSED-----SKLRILDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  516 (667)
Q Consensus       459 ~s~d-----g~I~iwd~~~~~~~~~~-~~~-~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~  516 (667)
                      |+.+     ..+.+||..+..-.... ... ......+.+  +++.++.|+.+     ..+.+||+.+..
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            7654     46888997643211111 111 111122222  66777777654     468999988764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.03  E-value=5.3  Score=39.67  Aligned_cols=182  Identities=10%  Similarity=0.107  Sum_probs=94.3

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEE-eeCC-CcEEEEEEeeCCCCEEEEEec----C-------CeEEEEecCCCeEEEec
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNV-FDHH-NYVTCVQFNPIDDNYFISGSI----D-------GKVRIWGVCEKRVVDWA  388 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~-~~h~-~~V~~l~f~p~d~~~l~sgs~----D-------g~v~iwdl~~~~~~~~~  388 (667)
                      +++.|+  ..+.+||..+++-... .... .......... ++.+++.|+.    +       ..+.+||..+.+-....
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            445555  5789999998875431 1111 1222222223 6788888884    1       12788999888765433


Q ss_pred             ccCCce--EEEEEeeCCCEEEEEecC--------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          389 DVRDVI--SAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       389 ~~~~~v--~~v~~spdg~~l~~gs~d--------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      .....-  .+++. -+++.++.|+.+        ..+.+||..++...... .+..    .......+ . -+ ..+++.
T Consensus        84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~----~r~~~~~~-~-~~-~~iyv~  154 (315)
T 4asc_A           84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPY----VVYGHTVL-S-HM-DLVYVI  154 (315)
T ss_dssp             CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSS----CCBSCEEE-E-ET-TEEEEE
T ss_pred             CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCC----cccceeEE-E-EC-CEEEEE
Confidence            322111  12222 266777777743        35889998876543221 1111    11111222 2 23 366777


Q ss_pred             EeC-C-----CcEEEEECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCC
Q 005956          459 TSE-D-----SKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDELC  516 (667)
Q Consensus       459 ~s~-d-----g~I~iwd~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg-----~I~iWd~~~~~  516 (667)
                      |+. +     ..+.+||..+..-... .......-.+++. -+++.++.|+.++     .+.+||..+..
T Consensus       155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            765 2     4688999764321111 1111111112222 2677777887654     58888887763

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.67  E-value=1  Score=45.98  Aligned_cols=87  Identities=8%  Similarity=0.125  Sum_probs=50.2

Q ss_pred             CcEEEEecCCCeEeEEeeCC-C---cEEEEEEeeCCCCEEEEEecC----------------------------------
Q 005956          330 KTVRMWQVGCNQCLNVFDHH-N---YVTCVQFNPIDDNYFISGSID----------------------------------  371 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~h~-~---~V~~l~f~p~d~~~l~sgs~D----------------------------------  371 (667)
                      ..+.+||..+.+-...-... .   ...++.  . ++++++.|+.+                                  
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAE  162 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGG
T ss_pred             ccEEEEeCCCCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccc
Confidence            46889999887644332211 1   122223  3 77888888864                                  


Q ss_pred             -----CeEEEEecCCCeEEEecccC--Cce-EEEEEeeCCCEEEEEec------CCcEEEEEe
Q 005956          372 -----GKVRIWGVCEKRVVDWADVR--DVI-SAICYIPDGKGFIVGSI------TGTCHFYKA  420 (667)
Q Consensus       372 -----g~v~iwdl~~~~~~~~~~~~--~~v-~~v~~spdg~~l~~gs~------dg~i~l~d~  420 (667)
                           ..+.+||+.+.+-.......  ... .+++. -+++.+++|+.      ...+..||+
T Consensus       163 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          163 DYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             GGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence                 57999999887754432221  111 22332 36677777764      235677876

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.39  E-value=7.7  Score=39.47  Aligned_cols=237  Identities=12%  Similarity=0.035  Sum_probs=122.0

Q ss_pred             eeeeccccceEEEEecCCCeEEEEeC-CCcEEEEecCCCeEeEE--e-----eCCCcEEEEEEeeCC---CCEEEEE-e-
Q 005956          303 QELHGHKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCLNV--F-----DHHNYVTCVQFNPID---DNYFISG-S-  369 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~~l~s~s~-Dg~I~iWd~~~~~~~~~--~-----~h~~~V~~l~f~p~d---~~~l~sg-s-  369 (667)
                      ..+...-...+.|+|.|+|.|+.+.. .|.|++++..+++....  +     ........|+|+| +   +..|+.. + 
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P-df~~~g~lYv~yt~  103 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP-DYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT-THHHHCEEEEEEEC
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc-ccccCCEEEEEEec
Confidence            33444455678999999995555555 89999998766554222  2     1345788999998 4   3344332 2 


Q ss_pred             -cCCeEEEEecCCC----------eEE-E-ec-ccCCceEEEEEeeCCCEEEEEec-------------CCcEEEEEecC
Q 005956          370 -IDGKVRIWGVCEK----------RVV-D-WA-DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASG  422 (667)
Q Consensus       370 -~Dg~v~iwdl~~~----------~~~-~-~~-~~~~~v~~v~~spdg~~l~~gs~-------------dg~i~l~d~~~  422 (667)
                       .+..|.-|.+..+          +.+ . +. ........|.|.|||.++++.+.             .|.|.-++...
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence             3455666655441          111 1 11 12233567999999987666432             24444444432


Q ss_pred             Ccce-----eeeEeeccccCcCCCCeEEEEEccCCCeEEEEE-eCCC--cEEEEECC-c--------------cee-eEE
Q 005956          423 NDLK-----LEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDS--KLRILDGV-D--------------VIH-KFK  478 (667)
Q Consensus       423 ~~~~-----~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~-s~dg--~I~iwd~~-~--------------~~~-~~~  478 (667)
                      .-..     ...+-..++     .....++|.|+| .+.++- +.++  .|.+.... +              ... .+.
T Consensus       184 ~ip~~nPf~~~~i~a~G~-----RNp~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~  257 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGH-----RNVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ  257 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCC-----SBCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred             CccCCCCCCCCeEEeeCC-----CCcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence            2000     001111111     235688999975 333322 2332  23332110 0              000 011


Q ss_pred             eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-----ccccccCccceeEEccCCcEEEEecCCCC
Q 005956          479 GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP-----SSKQKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       479 ~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~-----~~~~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      ...+......++|. +|..++..-..+.|....++.....     ...........+...|||.+.++..+.++
T Consensus       258 ~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~~g  330 (347)
T 3das_A          258 WSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNTDG  330 (347)
T ss_dssp             ECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred             cCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCCCC
Confidence            11112355677775 4555555555566766666544211     11111223445788999988887766554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.30  E-value=3.6  Score=49.48  Aligned_cols=203  Identities=12%  Similarity=0.150  Sum_probs=111.6

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEee-C----CCcEEEEEEeeCCCCEEEEEe-------cCCeEEE
Q 005956          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-H----HNYVTCVQFNPIDDNYFISGS-------IDGKVRI  376 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~~-h----~~~V~~l~f~p~d~~~l~sgs-------~Dg~v~i  376 (667)
                      .+|.--.|-....|+-.+. ..|.-|++.. ..+.+.|. |    ...|..-..++ +.+.++..+       ..|.+.+
T Consensus       106 e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQL  183 (1630)
T 1xi4_A          106 DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQL  183 (1630)
T ss_pred             CCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeee
Confidence            4577777766664443332 4799999974 34555553 2    34566667777 666665443       3478899


Q ss_pred             EecCCCeEEEecccCCceEEEEEe--e-CCCEEEEEec---CCcEEEEEecCC-----cceeeeEeeccccCcCCCCeEE
Q 005956          377 WGVCEKRVVDWADVRDVISAICYI--P-DGKGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       377 wdl~~~~~~~~~~~~~~v~~v~~s--p-dg~~l~~gs~---dg~i~l~d~~~~-----~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      |....+....+.+|-.....+...  + ..+.++.+..   .+.++|.++...     ........+.-.......--.+
T Consensus       184 yS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~  263 (1630)
T 1xi4_A          184 YSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA  263 (1630)
T ss_pred             eecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceE
Confidence            988776654444444333222221  1 1122222222   368888888543     1111111111111112334456


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ++.++. ...+..-+.-|.|+++|+.+....|...-...+|...+......=++.....|.|.--.++..
T Consensus       264 ~~vs~k-~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          264 MQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             EEeccc-cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence            677776 357888889999999999887777665444455544444333233344445666665555544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.28  E-value=2.2  Score=51.33  Aligned_cols=192  Identities=11%  Similarity=0.124  Sum_probs=114.3

Q ss_pred             cCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC-eEEEecc-c----C
Q 005956          318 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWAD-V----R  391 (667)
Q Consensus       318 s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~-~~~~~~~-~----~  391 (667)
                      +|...+++--...++.|+|+++...++.+....+|.--.|-.  .+.|+..+ +..|+-|++.+. .++.... |    .
T Consensus        74 nP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~  150 (1630)
T 1xi4_A           74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG  150 (1630)
T ss_pred             CCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence            455523322236799999999999999998888888888874  55555554 567999999652 2332222 1    3


Q ss_pred             CceEEEEEeeCCCEEEEEe-------cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc--cCCCeEEEEEe--
Q 005956          392 DVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITS--  460 (667)
Q Consensus       392 ~~v~~v~~spdg~~l~~gs-------~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s--p~g~~~l~~~s--  460 (667)
                      ..|..-..+++.++++..+       ..|.+.+|....+..+.    +.++    .+....+...  +.....+..+.  
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~----iegh----a~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh----hhHh----HhhhheeccCCCCCCceEEEEEEec
Confidence            4567777788899887644       34788899887544321    1111    1111111111  11011111111  


Q ss_pred             -CCCcEEEEECCcc---eeeEE---------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956          461 -EDSKLRILDGVDV---IHKFK---------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       461 -~dg~I~iwd~~~~---~~~~~---------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                       ..+.++|.++...   ...+.         .........++..++.-..+.....-|.|++||+.++.+...
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence             1367888876432   11111         001234456777888888888889999999999999876443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.46  E-value=10  Score=38.41  Aligned_cols=145  Identities=10%  Similarity=0.013  Sum_probs=75.5

Q ss_pred             eCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEee-C-------CCCEEEEEecCCeEEEEecCCCeEEEecccCCc
Q 005956          327 SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP-I-------DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV  393 (667)
Q Consensus       327 s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p-~-------d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~  393 (667)
                      +.||.|..++..+|.....+.     ...++.. .-.| .       .+..+++|+.++++...|+.+|+.+........
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~  142 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK  142 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence            589999999988886554443     2223322 1000 0       356889999999999999999998864443321


Q ss_pred             e--------EEEEEe-----eCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC-cCCCCe-EEEEEccCCCeEEEE
Q 005956          394 I--------SAICYI-----PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-TSGNKI-TGIQFSRDESQRIMI  458 (667)
Q Consensus       394 v--------~~v~~s-----pdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~-~~~~~I-~~l~~sp~g~~~l~~  458 (667)
                      .        .|....     -.+..++.|..+..+.+.+ +++. .. ...+..... .....+ .....+.++ .+ ++
T Consensus       143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W-~~~~s~~~~~~~~~~~~~~~~~s~Dg-~~-~~  217 (339)
T 2be1_A          143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SY-NVTYSTWQQNVLDVPLALQNTFSKDG-MC-IA  217 (339)
T ss_dssp             CC--------------------CCEEEEEEEEEECEECC-TTSC-CC-CCEEEEEECCTTTHHHHTTCSSCSSS-CC-EE
T ss_pred             cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eE-EEecccccccccccccccccccccCC-cE-EE
Confidence            1        111111     1245677777777777766 3332 11 111100000 000000 000011233 33 55


Q ss_pred             EeCCCcEEEEECCcceeeE
Q 005956          459 TSEDSKLRILDGVDVIHKF  477 (667)
Q Consensus       459 ~s~dg~I~iwd~~~~~~~~  477 (667)
                      ++.||.|.-+|........
T Consensus       218 ~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          218 PFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EETTTEEEEECSTTCCEEE
T ss_pred             ECCCCEEEEEECCCCcEEE
Confidence            7888888888876555444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.79  E-value=11  Score=37.33  Aligned_cols=174  Identities=10%  Similarity=0.111  Sum_probs=88.5

Q ss_pred             cEEEEecCCCeEeEEe-eC--CCcEEEEEEeeCCCCEEEEEec----CC-------eEEEEecCCCeEEEecccCCc--e
Q 005956          331 TVRMWQVGCNQCLNVF-DH--HNYVTCVQFNPIDDNYFISGSI----DG-------KVRIWGVCEKRVVDWADVRDV--I  394 (667)
Q Consensus       331 ~I~iWd~~~~~~~~~~-~h--~~~V~~l~f~p~d~~~l~sgs~----Dg-------~v~iwdl~~~~~~~~~~~~~~--v  394 (667)
                      .+.+||..+++-...- ..  ...-.+++ .. ++.+++.|+.    ++       .+.+||..+.+-.........  -
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            3788999888754421 11  11222332 23 6788888873    11       277889988776553322211  1


Q ss_pred             EEEEEeeCCCEEEEEecC-------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC------
Q 005956          395 SAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE------  461 (667)
Q Consensus       395 ~~v~~spdg~~l~~gs~d-------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~------  461 (667)
                      .+++. -+++.++.|+.+       ..+.+||..+....... .+....    .... ++. .+ +.+++.|+.      
T Consensus       103 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r----~~~~-~~~-~~-~~iyv~GG~~~~~~~  173 (318)
T 2woz_A          103 FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKV----YGHN-VIS-HN-GMIYCLGGKTDDKKC  173 (318)
T ss_dssp             CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCE----ESCE-EEE-ET-TEEEEECCEESSSCB
T ss_pred             cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcc----cccE-EEE-EC-CEEEEEcCCCCCCCc
Confidence            12222 367778888764       24778888776554321 111100    1111 222 23 356666653      


Q ss_pred             CCcEEEEECCcceee-EEeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956          462 DSKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  516 (667)
Q Consensus       462 dg~I~iwd~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~  516 (667)
                      -..+.+||..+..-. .........-.+++. -+++.++.|+.+     ..+.+||+.+..
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            246899997643221 111111111112222 356777777643     357788887764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.65  E-value=11  Score=38.86  Aligned_cols=156  Identities=9%  Similarity=-0.023  Sum_probs=78.6

Q ss_pred             cceEEEEecC--CCeEEEEeCCC----cEEEEecCCCeEeEEee---------------CCCcEEEEEEeeCC-CCEEEE
Q 005956          310 GDVLDLAWSN--SNYLLSCSMDK----TVRMWQVGCNQCLNVFD---------------HHNYVTCVQFNPID-DNYFIS  367 (667)
Q Consensus       310 ~~V~~l~~s~--~~~l~s~s~Dg----~I~iWd~~~~~~~~~~~---------------h~~~V~~l~f~p~d-~~~l~s  367 (667)
                      ..|.+|++.|  .+.|..++..+    .|...+ +.++.-..+.               ....|.++++.|.+ ...++.
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            4689999988  45555555544    343332 2232222221               11257889998744 566777


Q ss_pred             EecCCeEEEEecCCCeEEEecc-------------------cCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCccee
Q 005956          368 GSIDGKVRIWGVCEKRVVDWAD-------------------VRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKL  427 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~~~~-------------------~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~  427 (667)
                      +...+.|...+-....-.....                   ....+.+|.++| +...+++++..+.+...  .......
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~tW  211 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFES--TDAGTDW  211 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEE--SSTTSSC
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEE--CCCCCCc
Confidence            6666666555332222222111                   123578899988 34566666655544333  3222211


Q ss_pred             eeEee--cccc-C----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          428 EKVDF--HDRK-K----TSGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       428 ~~~~~--~~~~-~----~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      ..+..  .... .    .....+..+.+.|.+...|+++...+ |...+
T Consensus       212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~  259 (394)
T 3b7f_A          212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD  259 (394)
T ss_dssp             EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred             eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence            11110  0000 0    00134889999987445677776555 44443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.45  E-value=0.33  Score=49.54  Aligned_cols=109  Identities=9%  Similarity=0.052  Sum_probs=69.7

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEeEEeeCC--CcEEEEEEe--eCCCCEEEEE-ecCCeEEEEecCCCeEEEecccCCce
Q 005956          320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFN--PIDDNYFISG-SIDGKVRIWGVCEKRVVDWADVRDVI  394 (667)
Q Consensus       320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~--p~d~~~l~sg-s~Dg~v~iwdl~~~~~~~~~~~~~~v  394 (667)
                      ++.++.++.||.|.-.|..+|+.+..+...  .++....-.  +.++..++.. +.||.|..++..++...........+
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            358899999999999999999999988743  233221111  1122333333 58999999999887543211111111


Q ss_pred             E--EEEEe-----------eCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          395 S--AICYI-----------PDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       395 ~--~v~~s-----------pdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      .  -+...           ..+..+++|+.+|.+.-.|+.+++....
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            0  01110           1456888999999999999999887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.22  E-value=13  Score=41.88  Aligned_cols=149  Identities=15%  Similarity=0.175  Sum_probs=81.8

Q ss_pred             CC-eEEEEeCC------CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCC--eEEEEecCCCeEEEec
Q 005956          320 SN-YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWA  388 (667)
Q Consensus       320 ~~-~l~s~s~D------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg--~v~iwdl~~~~~~~~~  388 (667)
                      ++ .++.|+.+      ..+.+||..+.+-...-.  ....-.+++... ++.+++.|+.++  .+.+||+.+.+-....
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            45 56666643      357889988865443322  111112233323 678888888765  6999999988755433


Q ss_pred             c------cCCceEEEEEeeC-CCEEEEEec--C-----CcEEEEEecCCcc----eeeeEeeccccCcCCCCeEEEEEcc
Q 005956          389 D------VRDVISAICYIPD-GKGFIVGSI--T-----GTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       389 ~------~~~~v~~v~~spd-g~~l~~gs~--d-----g~i~l~d~~~~~~----~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      .      ......++.+..+ ++.++.|+.  +     ..+.+||+.+...    ....+...  ..........+ ...
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~-~~~  606 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIK-YIT  606 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEE-EEE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEE-EeC
Confidence            2      2222344555555 667777775  2     4588999988772    01111110  00111122223 333


Q ss_pred             CCCeEEEEEeC--------CCcEEEEECCcc
Q 005956          451 DESQRIMITSE--------DSKLRILDGVDV  473 (667)
Q Consensus       451 ~g~~~l~~~s~--------dg~I~iwd~~~~  473 (667)
                      ++ .+++.|+.        ...|.+||..+.
T Consensus       607 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          607 PR-KLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             TT-EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CC-EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            23 67777763        346899997743

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.73  E-value=4  Score=46.00  Aligned_cols=149  Identities=13%  Similarity=0.164  Sum_probs=81.9

Q ss_pred             eEEEEeCC----CcEEEEecCCCeEeEEe-e-------CC-CcEEEEEEeeCCCCEEEEEecC------CeEEEEecCCC
Q 005956          322 YLLSCSMD----KTVRMWQVGCNQCLNVF-D-------HH-NYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEK  382 (667)
Q Consensus       322 ~l~s~s~D----g~I~iWd~~~~~~~~~~-~-------h~-~~V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~  382 (667)
                      .++.|+.+    ..+.+||..+++-...- .       .. ..-..+.+.. ++.+++.|+.+      ..+.+||+.+.
T Consensus       400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t~  478 (695)
T 2zwa_A          400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKTR  478 (695)
T ss_dssp             EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred             EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence            66666643    46888998877644433 1       11 1222333321 46677777754      35889999887


Q ss_pred             eEEEecccCC--ceEEEEEeeCCCEEEEEecCC--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          383 RVVDWADVRD--VISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       383 ~~~~~~~~~~--~v~~v~~spdg~~l~~gs~dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      +-........  .-.+++...+++.++.|+.++  .+.+||..++......  ..+...........+.+..+.+.+++.
T Consensus       479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~--~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT--PKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC--CSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc--CCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            6554332211  122333324788888888655  6899999877654321  111011111223345555542367777


Q ss_pred             EeC--C-----CcEEEEECCcc
Q 005956          459 TSE--D-----SKLRILDGVDV  473 (667)
Q Consensus       459 ~s~--d-----g~I~iwd~~~~  473 (667)
                      |+.  +     +.+.+||+.+.
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTT
T ss_pred             CCcCCCCCeeeCcEEEEEccCC
Confidence            765  2     45888986643

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.29  E-value=28  Score=35.58  Aligned_cols=146  Identities=8%  Similarity=-0.026  Sum_probs=70.4

Q ss_pred             cceEEEEecC---CCeEEEEeCCCcEEEEecCCCeEeEEee--------------------CCCcEEEEEEeeCCCCEEE
Q 005956          310 GDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       310 ~~V~~l~~s~---~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--------------------h~~~V~~l~f~p~d~~~l~  366 (667)
                      ..|.+|++.|   .+.|..++..+.|...+= .++.-..+.                    ....+.+|.+.|.+.+.++
T Consensus       115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~  193 (394)
T 3b7f_A          115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY  193 (394)
T ss_dssp             CEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred             cceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence            3578888875   346666655555544422 222222221                    1235789999874455566


Q ss_pred             EEecCCeEEEEecCCCeEEEecc-c------------CCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956          367 SGSIDGKVRIWGVCEKRVVDWAD-V------------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDF  432 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~~~~-~------------~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~  432 (667)
                      .+..++.|...+-....-..... .            ...+.++.++|+ ...|++++..| |...+  ........+..
T Consensus       194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~--D~G~tW~~~~~  270 (394)
T 3b7f_A          194 IGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD--RREGVWKRIGD  270 (394)
T ss_dssp             EEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE--TTTTEEECGGG
T ss_pred             EEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC--CCCCcceECCC
Confidence            66555545444322222211111 0            124888999985 46777776554 43333  22222111110


Q ss_pred             ccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          433 HDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                       .........+..+.+.|.....|+++.
T Consensus       271 -~l~~~~~~~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          271 -AMPREVGDIGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             -GSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred             -CCCCCCccceEEEEECCCCCCEEEEEe
Confidence             000000133567888764334455543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.79  E-value=16  Score=36.82  Aligned_cols=91  Identities=11%  Similarity=0.225  Sum_probs=48.2

Q ss_pred             CC-eEEEEeC-CCcEEEEecCC--CeEeEEeeCC--C-cEEEEEEeeCCCCEEEEEec-C---------CeEEEEecCCC
Q 005956          320 SN-YLLSCSM-DKTVRMWQVGC--NQCLNVFDHH--N-YVTCVQFNPIDDNYFISGSI-D---------GKVRIWGVCEK  382 (667)
Q Consensus       320 ~~-~l~s~s~-Dg~I~iWd~~~--~~~~~~~~h~--~-~V~~l~f~p~d~~~l~sgs~-D---------g~v~iwdl~~~  382 (667)
                      ++ .++.|+. ...+.++|..+  .+-...-...  . .-.+++..  ++.+++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            45 4555554 35688889864  3222211111  1 11122222  5777777776 2         46899999988


Q ss_pred             eEEEecccC--CceEEEEEeeCCCEEEEEecC
Q 005956          383 RVVDWADVR--DVISAICYIPDGKGFIVGSIT  412 (667)
Q Consensus       383 ~~~~~~~~~--~~v~~v~~spdg~~l~~gs~d  412 (667)
                      +-.......  ......+...+++.++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            755433222  111122222677888888754

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=86.49  E-value=26  Score=34.28  Aligned_cols=182  Identities=12%  Similarity=0.015  Sum_probs=95.3

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeE-EeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-CeEEEec
Q 005956          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWA  388 (667)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~-~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~~~~~~  388 (667)
                      .|..++......++. . ||.|..|-....-.+. -......|..++...   ...+.-. ||.|+.|-... +++-...
T Consensus        64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            466666554444444 4 8888888654321111 111234677777753   3444445 99999997654 2221112


Q ss_pred             ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956          389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  468 (667)
Q Consensus       389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw  468 (667)
                      .....|..++...  .+.++-. +|.+..|-.........  .     ......|..++....  ..++.  .||.|+.|
T Consensus       138 ~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gqlg~--p-----~~~~~~v~~i~~G~~--hs~al--~~G~v~~w  203 (282)
T 3qhy_B          138 EAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFGQTTV--P-----AEAQSGVDDVAGGIF--HSLAL--KDGKVIAW  203 (282)
T ss_dssp             GGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSC--C-----GGGGSSEEEEEECSS--EEEEE--ETTEEEEE
T ss_pred             cCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCCCCCC--c-----eecCCCeEEEEecCC--EEEEE--ECCeEEEE
Confidence            2234466665433  2333334 78888887654322211  0     011256888877654  34444  59999999


Q ss_pred             ECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          469 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       469 d~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      -....-+.-........|..++..... .++. . ||.|+.|-....
T Consensus       204 G~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          204 GDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRT  247 (282)
T ss_dssp             ECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCC
T ss_pred             ECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCC
Confidence            644211110000122346666655433 2333 3 899999976553

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=86.12  E-value=30  Score=34.72  Aligned_cols=150  Identities=13%  Similarity=0.144  Sum_probs=88.4

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccce
Q 005956          233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV  312 (667)
Q Consensus       233 dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V  312 (667)
                      +..++++++.+|.|+--.+.......             ..                         +.....+... +.+
T Consensus       108 ~e~~~v~~T~~G~iKr~~l~~~~~~~-------------r~-------------------------G~~~i~lke~-D~l  148 (327)
T 3uc1_A          108 DAPYLVLATRNGLVKKSKLTDFDSNR-------------SG-------------------------GIVAVNLRDN-DEL  148 (327)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGGCCCC-------------SS-------------------------CEESCBCCTT-CCE
T ss_pred             CCCEEEEEcCCCEEEEeEHHHhhccc-------------cC-------------------------ceEEEEECCC-CEE
Confidence            57899999999999998877522100             00                         0011122222 233


Q ss_pred             EEEEe-cCCCeEEEEeCCCcEEEEecC--C---------CeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          313 LDLAW-SNSNYLLSCSMDKTVRMWQVG--C---------NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       313 ~~l~~-s~~~~l~s~s~Dg~I~iWd~~--~---------~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                      ..+.. ..+..|+..+..|.+..+.+.  .         |.....+.....|.++...+ .+.+++..+..|.++.-.+.
T Consensus       149 v~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~  227 (327)
T 3uc1_A          149 VGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIE  227 (327)
T ss_dssp             EEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGG
T ss_pred             EEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHH
Confidence            33333 333377777788887777665  2         11111223556777777666 56789999999999988764


Q ss_pred             CCe--------EE--EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC
Q 005956          381 EKR--------VV--DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  422 (667)
Q Consensus       381 ~~~--------~~--~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~  422 (667)
                      .-.        +.  ......+.+..+....+...++..+.+|.+..+....
T Consensus       228 e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          228 EYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             GSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             HccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            321        11  1222134455554445566788888999888887754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=84.69  E-value=48  Score=35.85  Aligned_cols=195  Identities=13%  Similarity=0.128  Sum_probs=109.3

Q ss_pred             CC-eEEEEe-CCCcEEEEecCCCeEeEEee--CCCcEEEEEEe--eCCCCEEEEEec-------CCeE------------
Q 005956          320 SN-YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFN--PIDDNYFISGSI-------DGKV------------  374 (667)
Q Consensus       320 ~~-~l~s~s-~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~--p~d~~~l~sgs~-------Dg~v------------  374 (667)
                      || +|+.-. .+..|-..+++..++-+.+.  ....+.++.|.  | +..|++.++.       ||..            
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f  219 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY  219 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence            44 455444 45567777888888776664  66788888887  5 6667777653       2221            


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC---------------cEEEEEecC-------Ccce------
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYKASG-------NDLK------  426 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg---------------~i~l~d~~~-------~~~~------  426 (667)
                      ...|..+.++.......+....+...++|++.++.+.+.               .+.++++..       ++..      
T Consensus       220 ~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g  299 (638)
T 3sbq_A          220 NAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK  299 (638)
T ss_dssp             EEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence            112333333322111223344455677888877766432               355666531       1110      


Q ss_pred             eeeEeecccc--C-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-----------e-EEeCCCCCC
Q 005956          427 LEKVDFHDRK--K-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------K-FKGLPKSGS  485 (667)
Q Consensus       427 ~~~~~~~~~~--~-------~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-----------~-~~~~~~~~~  485 (667)
                      ...+....+.  .       ........+..+|||...++.+--+.++.|+|..+...           . ..-..-...
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG  379 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG  379 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence            0011111000  0       01133457889999865566666788999999764211           1 111113456


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          486 QMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       486 v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ....+|.++|.-..|---|..|.-|+++..
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             ccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            788999999944444558999999999753

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=83.88  E-value=18  Score=38.36  Aligned_cols=113  Identities=12%  Similarity=0.105  Sum_probs=61.6

Q ss_pred             CceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccC-----cCCCCeEEEEEccC---CCeEEEEEeC-
Q 005956          392 DVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----TSGNKITGIQFSRD---ESQRIMITSE-  461 (667)
Q Consensus       392 ~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~-----~~~~~I~~l~~sp~---g~~~l~~~s~-  461 (667)
                      .....|+|.|||. .|+++...|.|++++............+.....     ........|+|+|+   +..+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567899999996 577778899999997543211111111111111     11356789999996   2233333221 


Q ss_pred             -C----------CcEEEEECC----------cceeeEEe--CCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956          462 -D----------SKLRILDGV----------DVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD  504 (667)
Q Consensus       462 -d----------g~I~iwd~~----------~~~~~~~~--~~~~~~v~~v~~spdg~~l~sgs~D  504 (667)
                       +          ..|.-|.+.          .....+..  .........++|.|||.+.++.++.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             1          133334432          11122221  1223456789999999887777654

>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}

Probab=81.55  E-value=0.62  Score=30.67  Aligned_cols=19  Identities=32%  Similarity=0.644  Sum_probs=15.7

Q ss_pred             CCCCCcccceeeccccccc
Q 005956            3 SSDEGVDDVFFDSTDCLSF   21 (667)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~   21 (667)
                      .|||+||-+|||+.+-|..
T Consensus        12 ~SdEDed~EfFDA~efITv   30 (47)
T 2rr3_B           12 MSDEDDENEFFDAPEIITM   30 (47)
T ss_dssp             SCCCCCSSCCBCCCSSCSS
T ss_pred             ccccccccccccccceeEc
Confidence            4799999999999886653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.60  E-value=61  Score=34.17  Aligned_cols=29  Identities=24%  Similarity=0.097  Sum_probs=21.6

Q ss_pred             ccEEEEEEcCCCC-EEEEEECCCcEEEEEc
Q 005956          223 GCIWTLKFSPDGR-YLASGGEDGVVRIWHV  251 (667)
Q Consensus       223 ~~I~~v~fspdg~-~Latgs~Dg~I~vWdv  251 (667)
                      ..-+.|+|.|||. .|+.+...|.|++++.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~   43 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTP   43 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence            3467999999996 4445567898888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	667
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (251), Expect = 5e-24
 Identities = 57/311 (18%), Positives = 101/311 (32%), Gaps = 21/311 (6%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
             +  H+  +  + F P    + S  ED  +++W   +     +                
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFD 68

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
                  S    + I    FQ  E                   N ++++S S DKT++MW
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVI 394
           +V    C+  F  H     +     D     S S D  VR+W V  K    +  + R V+
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 395 SAICYIPDGKGFIVGSITGTC--------HFYKASGNDLKLEKVDFHDRK-----KTSGN 441
             I + P+     +   TG+          F  +   D  ++  D              N
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 442 KITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHII 499
            + G+ F     + I+  ++D  LR+ D  +   +             S  F  T  +++
Sbjct: 249 WVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVV 305

Query: 500 SIGDDCRVYVW 510
           +   D  V VW
Sbjct: 306 TGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.6 bits (210), Expect = 8e-19
 Identities = 47/270 (17%), Positives = 94/270 (34%), Gaps = 21/270 (7%)

Query: 127 NECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRK 186
            +   TL+G ++   Q +    +            +K    +     +       +    
Sbjct: 49  GDFERTLKGHTDSV-QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 107

Query: 187 PNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVV 246
                        +    K  E    Y  +    H+  +  ++ + DG  +AS   D  V
Sbjct: 108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 247 RIWHVTSV-----------AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295
           R+W V +               C S+  +  + S ++    +  K       ++      
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 296 QI------EESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD- 347
            I          L  L GH   V  + +     ++LSC+ DKT+R+W     +C+   + 
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           H ++VT + F+     Y ++GS+D  V++W
Sbjct: 288 HEHFVTSLDFHK-TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 56/270 (20%)

Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFN 358
               L GH+  V  + +    + ++S S D T+++W             H + V  + F+
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 359 PI-----------------------------------------DDNYFISGSIDGKVRIW 377
                                                      + ++ +S S D  +++W
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 378 GVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-------- 428
            V     V  +   R+ +  +    DG      S   T   +  +  + K E        
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 429 -KVDFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG 484
             + +         S    +  + S      ++  S D  +++ D    +     +    
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 485 SQMSASFTTTGKHIISIGDDCRVYVWNYDE 514
                 F + GK I+S  DD  + VW+Y  
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKN 278

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.4 bits (246), Expect = 3e-23
 Identities = 57/304 (18%), Positives = 103/304 (33%), Gaps = 12/304 (3%)

Query: 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 271
           + T + ++ H   I+ + +  D R L S  +DG + IW   +               + A
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 272 KEGKIKFGKKKSSHVPVVIPD-EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK 330
                 +           I + +  +      +EL GH G +    + + N +++ S D 
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWAD 389
           T  +W +   Q    F  H           D   F+SG+ D   ++W V E      +  
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449
               I+AIC+ P+G  F  GS   TC  +    +                   IT + FS
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-----ELMTYSHDNIICGITSVSFS 279

Query: 450 RDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 507
           +   + ++   +D    + D +         G            T  G  + +   D  +
Sbjct: 280 KS-GRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLGVTDDGMAVATGSWDSFL 336

Query: 508 YVWN 511
            +WN
Sbjct: 337 KIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.7 bits (135), Expect = 3e-09
 Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 46/134 (34%)

Query: 203 KKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT 262
           +   +       +         I ++ FS  GR L +G +D    +W             
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--------- 301

Query: 263 DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSN 321
                                                     L GH   V  L  + +  
Sbjct: 302 ------------------------------------ADRAGVLAGHDNRVSCLGVTDDGM 325

Query: 322 YLLSCSMDKTVRMW 335
            + + S D  +++W
Sbjct: 326 AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 37/265 (13%), Positives = 72/265 (27%), Gaps = 43/265 (16%)

Query: 292 DEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 350
           D V +I+    + L GH   +  + W  +S  L+S S D  + +W       ++     +
Sbjct: 38  DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97

Query: 351 -YVTCVQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVVDWADVRDVIS 395
            +V    + P  +     G  +                 R        +     + D   
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157

Query: 396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK------------- 442
                                 +     D+    +    R   SG               
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 443 -----------ITGIQFSRDESQRIMITSEDSKLRI--LDGVDVIHKFKGLPKSGSQMSA 489
                      I  I F  +        S+D+  R+  L     +  +          S 
Sbjct: 218 CRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276

Query: 490 SFTTTGKHIISIGDDCRVYVWNYDE 514
           SF+ +G+ +++  DD    VW+  +
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALK 301

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (228), Expect = 1e-20
 Identities = 56/331 (16%), Positives = 120/331 (36%), Gaps = 39/331 (11%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 280
           H   +  +KFS DG YLA+G  +   +++ V+  +      +DD     + +        
Sbjct: 61  HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-VARLSDDSAANKDPENLNTSSSP 118

Query: 281 KKSSHVPVV-----------------IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYL 323
               ++  V                 I     +  +  +      +       + + + L
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 324 LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383
           +S S D+TVR+W +   QC       + VT V  +P D  Y  +GS+D  VR+W      
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 384 VVDWADV--------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435
           +V+  D         +D + ++ +  DG+  + GS+  +   +     + K +    +  
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 436 K-----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQM- 487
                     + +  +  +++  + I+  S+D  +   D      +   +G   S   + 
Sbjct: 299 TCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 357

Query: 488 ---SASFTTTGKHIISIGDDCRVYVWNYDEL 515
               +S         +   DC+  +W Y ++
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.6 bits (184), Expect = 3e-15
 Identities = 39/170 (22%), Positives = 61/170 (35%), Gaps = 40/170 (23%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG 274
           ++    HK  ++++ F+ DG+ + SG  D  V++W++ +                     
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN--------------------- 285

Query: 275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVR 333
                            D       +      GHK  VL +A + N  Y+LS S D+ V 
Sbjct: 286 ------------ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 334 MWQVGCNQCLNVFD-HHNYVTCVQFNPI-----DDNYFISGSIDGKVRIW 377
            W       L +   H N V  V          + N F +GS D K RIW
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 4e-14
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 26/269 (9%)

Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 279
           +    I ++ FSPDG++LA+G ED ++RIW + +          +    S          
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 339
              S    V I D         L    G       ++  +  Y+ + S+D+ VR+W    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV--AVSPGDGKYIAAGSLDRAVRVWDSET 236

Query: 340 NQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV------------ 379
              +   D        H + V  V F   D    +SGS+D  V++W +            
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 380 -CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438
                 V +   +D + ++    + +  + GS      F+     +  L  +  H     
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVI 354

Query: 439 SGNKITGIQFSRDESQRIMITSEDSKLRI 467
           S     G     +        S D K RI
Sbjct: 355 SVAVANGSSLGPE-YNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 6e-10
 Identities = 39/286 (13%), Positives = 83/286 (29%), Gaps = 76/286 (26%)

Query: 302 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------------- 347
           L +   H   V  + +SN    L+   +KT ++++V     +                  
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 348 -----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYI-- 400
                   Y+  V F+P D  +  +G+ D  +RIW +  +++V      +          
Sbjct: 115 SSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 401 -----------------------------------------PDGKGFIVGSITGTCHFYK 419
                                                     DGK    GS+      + 
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 420 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD---------- 469
           +    L       ++      + +  + F+RD  Q ++  S D  +++ +          
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 470 --GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513
                   +   +      +S + T   ++I+S   D  V  W+  
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 52/152 (34%)

Query: 193 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252
           K   ++   NK       +         HK  + ++  + +  Y+ SG +D  V  W   
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 253 SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV 312
           S                                              +PL  L GH+  V
Sbjct: 339 S---------------------------------------------GNPLLMLQGHRNSV 353

Query: 313 LDLAWSNS-------NYLLSCSMDKTVRMWQV 337
           + +A +N        N   + S D   R+W+ 
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 8e-08
 Identities = 63/379 (16%), Positives = 118/379 (31%), Gaps = 51/379 (13%)

Query: 312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI 366
           +LDL   +    L    +    ++     + ++V      DH + V CV+F+  D  Y  
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLA 78

Query: 367 SGSIDGKVRIWGVCEKRVV-----DWADVRDV--------------ISAICYIPDGKGFI 407
           +G  +   +++ V +  +V     D A  +D               I ++C+ PDGK   
Sbjct: 79  TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467
            G+       +          +            +            +++  S D  +RI
Sbjct: 138 TGAEDRLIRIWD--------IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 527
            D            + G    A     GK+I +   D  V VW+ +      +       
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE------TGFLVERL 243

Query: 528 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS 587
             E+    G   +V       + +S+ S S  D S K  NL+ A    DS+  + G+   
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 588 NDGPCRG---SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGL 644
                +    S         +   + D      D +          + + V +++   G 
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362

Query: 645 -------VIVTAGCDGMIK 656
                  V  T   D   +
Sbjct: 363 SLGPEYNVFATGSGDCKAR 381

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 7e-16
 Identities = 41/344 (11%), Positives = 99/344 (28%), Gaps = 54/344 (15%)

Query: 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-------------HVTSVAASCKS 260
           + + ++ H   + T      G  + SG +D  +++W             H   V +S   
Sbjct: 8   SPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

Query: 261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS 320
                   ++           +  H        V  +     + + G +   L +    +
Sbjct: 67  DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126

Query: 321 ---------------------NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 359
                                  ++S + D  V++W      CL+    H          
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQ 184

Query: 360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419
            D  + +SGS+D  +R+W V     +        +++          + G+   T   + 
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIW- 242

Query: 420 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKF 477
                  ++        +      + +   +     ++ +S+D  +++ D    + I   
Sbjct: 243 ------DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296

Query: 478 KGLPKSGSQ---MSASFTTTGKHIISIGDD----CRVYVWNYDE 514
             L   GS         + T         +     ++ V ++D 
Sbjct: 297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 6e-11
 Identities = 28/248 (11%), Positives = 73/248 (29%), Gaps = 21/248 (8%)

Query: 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNP 359
             + L GH   V+       N ++S S D T+++W     +CL     H   V   Q   
Sbjct: 8   SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419
             +      +            + +         +  +                      
Sbjct: 68  --NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK------------RVVSG 113

Query: 420 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GVDVIHKF 477
           +    L++  ++           +  ++  + + +R++  + D  +++ D      +H  
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173

Query: 478 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 537
           +G       +       G H++S   D  + VW+ +      +   +   +      + +
Sbjct: 174 QGHTNRVYSLQFD----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI 229

Query: 538 SVAVQWPG 545
            V+     
Sbjct: 230 LVSGNADS 237

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 4/41 (9%)

Query: 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDG----VVRIW 249
             + E     G +W ++ S      A G  +G     + + 
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 7e-14
 Identities = 46/296 (15%), Positives = 89/296 (30%), Gaps = 16/296 (5%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-----SVAASCKSFTDDGGFGSNAKEGK 275
           H   +  +  S   R++ +GG  G V++W ++     S  +       D    S      
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
                       + I D          +               +S    SC  D  + +W
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
            +     +  F  H           D     +G +D  VR W + E R +   D    I 
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228

Query: 396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455
           ++ Y P G+   VG  +                      +     + +  ++F+    + 
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHV--------NKPDKYQLHLHESCVLSLKFAYC-GKW 279

Query: 456 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511
            + T +D+ L                +S S +S   +   K+I++   D +  V+ 
Sbjct: 280 FVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 1e-12
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 306 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364
           H H+  VL L ++    + +S   D  +  W+      +      + V     +  DD Y
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKY 320

Query: 365 FISGSIDGKVRIWGV 379
            ++GS D K  ++ V
Sbjct: 321 IVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 9e-12
 Identities = 38/256 (14%), Positives = 74/256 (28%), Gaps = 10/256 (3%)

Query: 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 273
           +  +       I + K  PDG  L  GGE   + IW + +     K+          A  
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

Query: 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 333
                    S      I       +    Q      G       ++   L +  +D TVR
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208

Query: 334 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
            W +   + L   D  + +  + + P    +   G     V +  V +            
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267

Query: 394 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
           + ++ +   GK F+        + ++                +    + +     S D  
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--------FQSKESSSVLSCDISVD-D 318

Query: 454 QRIMITSEDSKLRILD 469
           + I+  S D K  + +
Sbjct: 319 KYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 47/133 (35%)

Query: 206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 265
            +         ++  H+ C+ +LKF+  G++  S G+D ++  W                
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------ 296

Query: 266 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 324
                                             + + +       VL    S +  Y++
Sbjct: 297 ---------------------------------GASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 325 SCSMDKTVRMWQV 337
           + S DK   +++V
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 43/290 (14%), Positives = 72/290 (24%), Gaps = 47/290 (16%)

Query: 286 VPVVIPDEVFQIEESP--LQELH--GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ 341
            PV  P +       P   ++++   H   V  +  SN    +       V++W +    
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83

Query: 342 C------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV------DWAD 389
                  L+  +  NY+   +  P D    I G     + IW +              A 
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449
               ++                      +  +         D       S +        
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPK--------------------------- 482
            D + R     E  +L+  D    I      P                            
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262

Query: 483 --SGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL-CFPSSKQKNSVRSC 529
                 +S  F   GK  +S G D  +  W          SK+ +SV SC
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 312

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 70.7 bits (171), Expect = 1e-13
 Identities = 26/314 (8%), Positives = 72/314 (22%), Gaps = 27/314 (8%)

Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 279
                I  ++   D +     G      +          + F      G+    G  + G
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNG 97

Query: 280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYL-----------LSCSM 328
           K             V      P       +  + D   S+++                 +
Sbjct: 98  KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157

Query: 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV--------C 380
            + + ++ +   +       +++     F+          S                   
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEV 216

Query: 381 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440
             +      +    +    +P       G       + ++S  ++           ++S 
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 500
              +        +       E   L   D      K   +    +      +   K ++ 
Sbjct: 277 LIYSVPVHGEF-AAYYQGAPEKGVLLKYDVKT--RKVTEV--KNNLTDLRLSADRKTVMV 331

Query: 501 IGDDCRVYVWNYDE 514
             DD ++Y +  ++
Sbjct: 332 RKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 4e-06
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 253
           ++++   K  +  L+ S D + +    +DG +  + +  
Sbjct: 307 TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.5 bits (165), Expect = 4e-13
 Identities = 39/298 (13%), Positives = 79/298 (26%), Gaps = 9/298 (3%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
           Q    H   I  L  S DG+ L S   +G +  W +++  ++           +  K   
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
                  S    + +        +S     +      L LA S    +   +  K + ++
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
             G              +CV  +       + G                     V     
Sbjct: 126 SHGKLTE---VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455
                 +   F+V +         +  N+        H    T             ++ R
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANN----FELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 456 IMITSEDSKLRI--LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511
           +   S D+ + +  ++             + S +++        I+S G D  +  WN
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 8e-08
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 302 LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFN 358
            Q  +GH   +  L+ S +   L S   +  +  W +       VF   H   +T ++  
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDW 387
              D + +S      +++       V   
Sbjct: 65  SKGDLFTVSWDDH--LKVVPAGGSGVDSS 91

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 7e-05
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 317 WSNSNYLLSCSMDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373
             ++  L + S+D +V +W +     +  +    H            ++   +S   D  
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291

Query: 374 VRIWGV 379
           ++ W V
Sbjct: 292 IKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 9e-04
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252
            AH           +   + S G+D  ++ W+V 
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 34/311 (10%), Positives = 75/311 (24%), Gaps = 30/311 (9%)

Query: 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407
           H+  +T +  +  D     S   +G +  W           D+   IS   +       I
Sbjct: 11  HNKAITALSSSA-DGKTLFSADAEGHINSW-----------DISTGISNRVFPDVHATMI 58

Query: 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467
            G  T +         D  L+ V        S   +     S+     +    +      
Sbjct: 59  TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI----- 113

Query: 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 527
                          S  +++    +     +++ +D +       +      K   +  
Sbjct: 114 ---AVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 170

Query: 528 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS 587
           S          +                 S +       N             +      
Sbjct: 171 SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 230

Query: 588 NDGPCRGSATWPAE--KLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLV 645
           +  P        +    + +W++          P    +  +  + +  V ++       
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNM--------NKPSDHPIIIKGAHAMSSVNSVIWLNETT 282

Query: 646 IVTAGCDGMIK 656
           IV+AG D  IK
Sbjct: 283 IVSAGQDSNIK 293

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 6e-13
 Identities = 29/315 (9%), Positives = 67/315 (21%), Gaps = 24/315 (7%)

Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS------NAK 272
           QA K  I  +K  P    L     DG + ++     A +                     
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 273 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTV 332
                +       +  V        +     E +     +               + + +
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

Query: 333 RMWQVGCNQCLNVFDH---HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV---- 385
                G         +         +     + +  I G  + +V+ + +          
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 386 -DWADVRDVISAICYIPDGKGFIVGSITGTCHFY--------KASGNDLKLEKVDFHDRK 436
            +      +        + +G+   SI G               S           + + 
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247

Query: 437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK 496
                 +  I+FS    + +     D  +   + +    K K   K           +  
Sbjct: 248 TNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWN-LQTRKKIKNFAKFNEDSVVKIACSDN 305

Query: 497 HIISIGDDCRVYVWN 511
            +     D       
Sbjct: 306 ILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 3e-11
 Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 9/254 (3%)

Query: 302 LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQV----GCNQCLNVFDHHNYVTCVQ 356
           +Q     K  + D+    + + LL  S D ++ +++          L    + + + C  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 357 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH 416
           F    D     G++ G++    +            +    IC I       + + +    
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 417 FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD----GVD 472
                  +     +   +    +      I      S R+++   +S+++         D
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 473 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 532
                +   K   +  A      +       D RV V  +D+     +  K     C   
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 533 FSEGVSVAVQWPGI 546
             +  ++A     I
Sbjct: 244 NLKDTNLAYPVNSI 257

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 14/125 (11%), Positives = 36/125 (28%), Gaps = 5/125 (4%)

Query: 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364
                G V    + +     + S     R  ++         +    V  ++F+P    +
Sbjct: 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT----NLAYPVNSIEFSP-RHKF 265

Query: 365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424
             +   DG +  W +  ++ +      +  S +          + +   T     A    
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325

Query: 425 LKLEK 429
           ++L  
Sbjct: 326 IELNA 330

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 62/308 (20%)

Query: 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284
           I    ++ D   +A    +  V I+  +                                
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------------- 43

Query: 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCL 343
                            + EL  H G V  + W+ +SN +++C  D+   +W +      
Sbjct: 44  -----------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86

Query: 344 NVFDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISA 396
                       +      ++  F  GS    + I    ++            +R  + +
Sbjct: 87  PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 146

Query: 397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES--- 453
           + + P+      GS    C  + A   +++          K    ++     S       
Sbjct: 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206

Query: 454 -------QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 506
                   R+   S DS + + D    +       ++   ++ +F T    + + G DC 
Sbjct: 207 VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCF 265

Query: 507 VYVWNYDE 514
             ++ YD 
Sbjct: 266 PVLFTYDS 273

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 44/323 (13%), Positives = 88/323 (27%), Gaps = 29/323 (8%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
            E++ H G +  + ++PD   + + G D    +W +                 +      
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL----AWSNSNYLLSCSMDKT 331
               K        VI    F+ E       H  K     +       NS  L + S D  
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

Query: 332 VRMWQVGCNQCLNVFDHHNYVTCVQF------------------NPIDDNYFISGSIDGK 373
            R++     +         + + + F                     + +     S D  
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224

Query: 374 VRIWGV-CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 432
           V +     +  V   A     + A+ +I +      G       F   S           
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 284

Query: 433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT 492
              K++S   +T  +  ++  ++       +    LD    +HK      S   + +   
Sbjct: 285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS---LHK---NSVSQISVLSGGK 338

Query: 493 TTGKHIISIGDDCRVYVWNYDEL 515
                  + G D  + +W+   L
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 219 QAHKGCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSF 261
             HK  +  +     G+       + G DG + IW V S+ ++ K  
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 34/270 (12%), Positives = 70/270 (25%), Gaps = 9/270 (3%)

Query: 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451
           + IS   +  D     +       H Y+ SGN             K    ++TG+ ++ D
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-----LKEHNGQVTGVDWAPD 62

Query: 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR--VYV 509
            S RI+    D    +        K   +    ++ +                    + +
Sbjct: 63  -SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 510 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE 569
             +++       +           S            G+        S      +     
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181

Query: 570 TAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCL 629
           T    +      +    S+ G       + A    +  V+ DS     D  ++       
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVH-GVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240

Query: 630 NNVDDVRAISATWGLVIVTAGCDGMIKTFH 659
           +    + A++      +V AG D     F 
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 10/130 (7%)

Query: 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK 272
                + +    +  + F  +   +A+G  D    ++   S A              +++
Sbjct: 234 MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292

Query: 273 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-----NSNYLLSCS 327
            G     + ++                +       HK  V  ++         +   +  
Sbjct: 293 RGLTARERFQNLDKKASSEGSA----AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 348

Query: 328 MDKTVRMWQV 337
           MD  + +W V
Sbjct: 349 MDGGMSIWDV 358

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 1e-10
 Identities = 42/363 (11%), Positives = 91/363 (25%), Gaps = 78/363 (21%)

Query: 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW---------------------- 249
           + T+   +AH   I+++       +  S   DG +++W                      
Sbjct: 4   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 250 ---HVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306
              HV  + A  +   +     + +  G + F +         +       E+  L +  
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF-----EKLDLLDSD 116

Query: 307 GHKGDVLDLAWSNS------NYLLSCSMDKTVRMWQV-------------------GCNQ 341
             K     L W  S      + L++  +  T  +W+                        
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 342 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI-------WGVCEKRVVDWADVRDVI 394
             +      + T V  +        +G  +G V+I            +      +  + I
Sbjct: 177 VESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 395 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR---- 450
            ++ + P G    +   + +         +             +S   +     S     
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294

Query: 451 ----DESQRIMITSEDSKLRILDGVD--VIHKFKG--LPKSGSQMSASFTTTGKHIISIG 502
               D  + +     D KLR  D      I             +   +    G  +   G
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 503 DDC 505
              
Sbjct: 355 VFD 357

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 37/298 (12%), Positives = 86/298 (28%), Gaps = 48/298 (16%)

Query: 213 YTSQEIQAHKGCIWTLK-FSPDGRYLASGGEDGVVRIWHVTS------------------ 253
           ++ Q I         +     D + + SG  D  ++IW   +                  
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 254 --------------------VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293
                                     +                      S    + + D 
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 294 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT 353
               + +  + L GH+  V  + + +  Y++S S D+T+++W     + +   + H    
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-- 179

Query: 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG 413
            +      D   +SGS D  +R+W +     +   +  + +       + +  + G+  G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-IVSGAYDG 238

Query: 414 TCHFYKASGNDLKLEKVDFHDRKKTSG--NKITGIQFSRDESQRIMITSEDSKLRILD 469
               +                 +       ++  +QF      +I+ +S D  + I D
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 6e-10
 Identities = 29/201 (14%), Positives = 63/201 (31%), Gaps = 48/201 (23%)

Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK 277
           ++ H   + T     +  Y+ +G +D ++R++   +                        
Sbjct: 8   LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSIN------------------------ 42

Query: 278 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCS--MDKTVRMW 335
                                +  L +L GH G V  L +++   L+S S      V   
Sbjct: 43  ---------------------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 81

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
           + GC   +    +            +  Y ++GS D  + +W + ++  V          
Sbjct: 82  KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 141

Query: 396 AICYIPDGKGFIVGSITGTCH 416
            + + P+   + VG + G   
Sbjct: 142 LVFHTPEENPYFVGVLRGHMA 162

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 5e-09
 Identities = 43/356 (12%), Positives = 103/356 (28%), Gaps = 19/356 (5%)

Query: 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN 363
           L GH   V+       NY+++ + DK +R++     + L     H   V  +++      
Sbjct: 8   LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65

Query: 364 YFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420
             +SGS         I   C   V +  +       I    + K  + GS   T H +K 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 421 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL 480
                  +  + HD             F       +      S    +  V   +    +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV-VSGSYDNTLI 184

Query: 481 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA 540
               +QM   +  +G                       ++ +   + + E  ++     A
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244

Query: 541 VQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPA 600
           +      +++  + +++         N  +  +       S  + F        S +   
Sbjct: 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--E 302

Query: 601 EKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIK 656
            +  ++++             + +    L + D + +++     ++     DG   
Sbjct: 303 NQFNIYNLR----------SGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSF 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 306 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDN 363
           + H        +  S+ +L    +    ++ +   + ++       + +  V F      
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KT 336

Query: 364 YFISGSIDGKVRIW 377
              +   DG+  + 
Sbjct: 337 LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 40/322 (12%), Positives = 94/322 (29%), Gaps = 39/322 (12%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN----- 270
            ++  H G +W LK++  G  ++   +  V                 +      +     
Sbjct: 47  LQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106

Query: 271 --------AKEGKIKF--------GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 314
                   +++  +                     +     +     +  L GH   V  
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-R 165

Query: 315 LAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374
               + N ++S S D T+ +W V   +CL +   H           +    IS S+D  +
Sbjct: 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225

Query: 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 434
           RIW +    ++        +  +  + D       +      +             D+  
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD----------ANDYSR 275

Query: 435 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD---GVDVIHKFKGLPKSGSQMSASF 491
           +       ++ I      S  I+++  +++  I +   G  V         +    S +F
Sbjct: 276 KFSYHHTNLSAITTFYV-SDNILVSGSENQFNIYNLRSGKLVHANILK--DADQIWSVNF 332

Query: 492 TTTGKHIISIGDDCRVYVWNYD 513
                 + ++  D + ++   D
Sbjct: 333 KGKTL-VAAVEKDGQSFLEILD 353

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (134), Expect = 4e-09
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 373
           W +S    +   D T+R+W V  ++C+  +           V      +   IS S+DG 
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 374 VRIW 377
           +  +
Sbjct: 320 LNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 42/316 (13%), Positives = 79/316 (25%), Gaps = 32/316 (10%)

Query: 221 HKGCIWTLKFSPDGRYLASG-GEDGVVRIW---------------HVTSVAASCK-SFTD 263
            +     L + P    +A   G+   VR                 H +SV  + K S   
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 264 DGGF-GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY 322
              +  S  + GK+                    +E +   E     G + D++W     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKES-------NSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 323 L---LSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378
               +    D             L     H   +             ++   DG V  + 
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188

Query: 379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438
               +            +     +        +       K S  D K  +   +     
Sbjct: 189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 248

Query: 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTG- 495
              +      S  +SQ+      D+ +R+ D      + K+    +           TG 
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308

Query: 496 KHIISIGDDCRVYVWN 511
             IIS+  D  +  + 
Sbjct: 309 GRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 34/231 (14%), Positives = 68/231 (29%), Gaps = 14/231 (6%)

Query: 202 NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 261
              K      +    E Q   G I  + +  +GR L   GE        ++  + +    
Sbjct: 95  TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE 154

Query: 262 TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF---QIEESPLQELHGHKGDVLDLAWS 318
                   NA   K     +  +                  +  +  H     V D+ +S
Sbjct: 155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 214

Query: 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN-----PIDDNYFISGSIDGK 373
             +     ++    ++          +    +    VQ        +D   F +   D  
Sbjct: 215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 274

Query: 374 VRIWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419
           +R+W V   + V     D   + +    +    +G+  I  S+ GT +FY+
Sbjct: 275 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYE 324

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.6 bits (127), Expect = 4e-08
 Identities = 28/311 (9%), Positives = 69/311 (22%), Gaps = 48/311 (15%)

Query: 223 GCIWTLKFSPDGRYLA----------SGGEDGVVRIWHVTS--VAASCKSFTDDGGFGSN 270
           G +     + DG ++A           G     V ++   +    A  +           
Sbjct: 47  GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 106

Query: 271 AKEG-----------KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS- 318
                            +F    +  V  +      ++ + P                  
Sbjct: 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR 166

Query: 319 -NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
             S   ++   + T  +                 +    ++       +  +  GK+   
Sbjct: 167 DGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHPAYSQ-KAGRLVWPTYTGKIHQI 221

Query: 378 GVCEKRVVDW-------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424
            +                              + Y        +         +K +   
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281

Query: 425 LKLEKVDFHDRKKT--SGNKITGIQFSRDESQRIMIT-SEDSKLRILDGVD--VIHKFKG 479
           + +      +R      G++I  I  S+DE   +    + D  L I D      +     
Sbjct: 282 VVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341

Query: 480 LPKSGSQMSAS 490
           L      ++ +
Sbjct: 342 LGHGPQVITTA 352

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 42/302 (13%), Positives = 79/302 (26%), Gaps = 29/302 (9%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
           + I  H   I  L  +P    L SG  DG +  W  +S+     +               
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-------- 54

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
                   S              +      H         + +N  +    + D  + + 
Sbjct: 55  --------SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL 106

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
           Q      +     ++  + V  +       +      +V      E        +R   S
Sbjct: 107 QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 166

Query: 396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI---TGIQFSRDE 452
            I   P       G + G    Y     ++K  +  F   K  + +      G      E
Sbjct: 167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226

Query: 453 SQRIMITSEDSKLRILD---GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 509
              +   S D+ + I      + +I             +  + T    ++S G D  +  
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNA--HKDGVNNLLWETPST-LVSSGADACIKR 283

Query: 510 WN 511
           WN
Sbjct: 284 WN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 357
            +  L+ + GH   +  L  +    L+S S D  +  W           DH N +  +  
Sbjct: 2   HDEVLKTISGHNKGITALTVN---PLISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDN 54

Query: 358 NP 359
           + 
Sbjct: 55  SK 56

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 4e-06
 Identities = 17/132 (12%), Positives = 31/132 (23%), Gaps = 44/132 (33%)

Query: 206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 265
                       I          +   +   +A+G  D  + I+ V              
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR------------ 246

Query: 266 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLS 325
                                               ++ L+ HK  V +L W   + L+S
Sbjct: 247 --------------------------------PMKIIKALNAHKDGVNNLLWETPSTLVS 274

Query: 326 CSMDKTVRMWQV 337
              D  ++ W V
Sbjct: 275 SGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 6e-06
 Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 306 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDN 363
                   +      + + + S+D  + ++ V    + +   + H + V  + +     +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PS 270

Query: 364 YFISGSIDGKVRIWGV 379
             +S   D  ++ W V
Sbjct: 271 TLVSSGADACIKRWNV 286

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 5e-07
 Identities = 40/266 (15%), Positives = 76/266 (28%), Gaps = 18/266 (6%)

Query: 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT----SVAASCKSFTDDGGFGSN 270
           ++    H       K SP G Y ASG   G VRIW  T     +  +   F+      S 
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

Query: 271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK 330
             E K      +       +           L         V          +     + 
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170

Query: 331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV-------RIWGVCEKR 383
                           +H  +V  V++NP    +  +G     V          GV E  
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 384 VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443
            +        +  + + PDG      S   T   +  +   +  + +    R +   ++ 
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIE---DQQ 286

Query: 444 TGIQFSRDESQRIMITSEDSKLRILD 469
            GI +++     ++  S +  +  ++
Sbjct: 287 LGIIWTKQ---ALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 43/129 (33%)

Query: 207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG 266
                   S +  AH G ++ L +SPDG  +AS   D  ++IW+V +             
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT------------- 269

Query: 267 FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 326
                        K + +                 +      +   L + W+    L+S 
Sbjct: 270 ------------LKVEKT-----------------IPVGTRIEDQQLGIIWTK-QALVSI 299

Query: 327 SMDKTVRMW 335
           S +  +   
Sbjct: 300 SANGFINFV 308

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.6 bits (117), Expect = 6e-07
 Identities = 19/311 (6%), Positives = 46/311 (14%), Gaps = 68/311 (21%)

Query: 230 FSPDGRYLA----------SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 279
               G   A           G     V ++   +                          
Sbjct: 72  AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------------------- 106

Query: 280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 339
                    +     F +              ++    S++  L             V  
Sbjct: 107 --LPIADIELPDAPRFSVGPRV---------HIIGNCASSACLLFFLFGSSAAAGLSVPG 155

Query: 340 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICY 399
                +       +C   +P        GS    +    +                A   
Sbjct: 156 ASDDQLTKSA---SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212

Query: 400 IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459
                      +            D+             + +      F     Q +   
Sbjct: 213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272

Query: 460 SEDSKLRILDGVDVIHKFKG-----------------LPKSGSQMSASFTTTGKH--IIS 500
                + IL                            +       +      G      +
Sbjct: 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332

Query: 501 IGDDCRVYVWN 511
                 + +++
Sbjct: 333 SAGTEVLDIYD 343

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 11/191 (5%), Positives = 37/191 (19%), Gaps = 22/191 (11%)

Query: 230 FSPDGRYLASGGEDGVVRIWHVTS-------VAASCKSFTDDG---------GFGSNAKE 273
            S      AS           V +        ++        G             +   
Sbjct: 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240

Query: 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 333
                      +      D       +  Q +   K     +  +  +     +  +   
Sbjct: 241 AGATMKAAIDGNESGRKADN---FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297

Query: 334 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--FISGSIDGKVRIWGVCEKRVVDWADVR 391
                  Q      + +    +     D     + + +    + I+     +     ++ 
Sbjct: 298 SVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356

Query: 392 DVISAICYIPD 402
               ++    +
Sbjct: 357 KGPESLSVQNE 367

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 8e-07
 Identities = 30/312 (9%), Positives = 71/312 (22%), Gaps = 45/312 (14%)

Query: 217 EIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
            I            +P GR   A+  +   +    + +                      
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---------------------- 65

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
            +   +     P      +F    SP  +                           V ++
Sbjct: 66  GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES-----PVRLELTHFEVQPTRVALY 120

Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
                     F+    +T + +   D +       D  V         +V+   ++   +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDP--EAGTLVEDKPIQSWEA 177

Query: 396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT------SGNKITGIQFS 449
                PD         +              ++  D    +           ++   +  
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237

Query: 450 RDESQRIMITSEDSKLRILDGVDVIHKF--------KGLPKSGSQMSASFTTTGKHIISI 501
             +          +K R     +V+  F        K +P   S  S + +T G  +   
Sbjct: 238 IMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297

Query: 502 GDDCRVYVWNYD 513
           G    +  ++ +
Sbjct: 298 GALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 253
                +++  S DG  +  GG  G +  +   +
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 16/211 (7%), Positives = 50/211 (23%), Gaps = 17/211 (8%)

Query: 321 NYLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
           +Y+L+ +    + +           + + D           P     + + +    +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 378 GVCEKRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 431
            +     +   D+         +      PDGK   +                 ++   D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 432 FHDRK----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM 487
                      +  +IT + ++RD   ++     D  +   +   ++             
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDG-SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 488 SASFTTTGKHIISIGDDCRVYVWNYDELCFP 518
                     + +  +   V    +      
Sbjct: 181 ---AQPDVLAVWNQHESSGVMATPFYTARKD 208

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 27/252 (10%), Positives = 57/252 (22%), Gaps = 27/252 (10%)

Query: 201 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS 260
           Q  +  +      + ++       I  L ++ DG  L   G D  V      ++      
Sbjct: 113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI 172

Query: 261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS 320
                                           +   +      E  G        A  + 
Sbjct: 173 -----------------------QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209

Query: 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380
           +     +    +    +   +          V                     +  + + 
Sbjct: 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-FGAYNVLESFDLE 268

Query: 381 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440
           +   +    +     ++    DG    +G   G    Y A   + K  +VD       S 
Sbjct: 269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE-KKGQVDLPGNASMSL 327

Query: 441 NKITGIQFSRDE 452
              +   F+RDE
Sbjct: 328 A--SVRLFTRDE 337

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 19/205 (9%), Positives = 63/205 (30%), Gaps = 13/205 (6%)

Query: 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
           + ++      + +      + + V D    V   + +     Y +    D ++ +  +  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWA 92

Query: 382 KRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435
           K     A++      R V S+     + +  I G+                 + V     
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 436 -----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSA 489
                      ++  I  S +  + I+   E  K+ +++  D+ +     +  +      
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

Query: 490 SFTTTGKHIISIGDDCRVYVWNYDE 514
            + ++ ++ ++  ++         +
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSK 237

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 16/156 (10%), Positives = 47/156 (30%), Gaps = 3/156 (1%)

Query: 360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419
           + + + ++    G++ +     K++V   D    +        G+  +V           
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMID 89

Query: 420 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG 479
                 +  KV        + +  +      ++   I       +  I+DG  +  K   
Sbjct: 90  --LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147

Query: 480 LPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDE 514
             +  +  + ++    +   I    +   ++ N  E
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 29/285 (10%), Positives = 60/285 (21%), Gaps = 39/285 (13%)

Query: 221 HKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHV-----------------TSVAASCKSFT 262
            K    T   +PD R         G +    +                    +    + +
Sbjct: 38  DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 263 DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY 322
            DG           +         P +         E+           V  +  ++   
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382
           L     D       V   +        N+       P    ++   S   +  +     +
Sbjct: 158 LYVAGPDIYK--MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215

Query: 383 RVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCHF-------------YKASGNDLKLE 428
              D  D             D K     +                     +  G   +L 
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA 275

Query: 429 KVDFHDRKKTS----GNKITGIQFSRDESQRIMITSEDSKLRILD 469
           K D   RK        +    + F +    ++ +    + L + +
Sbjct: 276 KYDLKQRKLIKAANLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 253
                + + F   G  L  GG    + +++  +
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 37/320 (11%), Positives = 78/320 (24%), Gaps = 38/320 (11%)

Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA----KEGKIKF-GKKK 282
                   Y+        + +  V S     KS      FG        + +  +     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 283 SSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCN 340
              +  +  D       + L  +       +   A S +   + +               
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 341 QC---------------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW-GVCEKRV 384
                            +  F     V  ++    D + +++G    K+ +  G     +
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA-ADDGSLYVAGPDIYKMDVKTGKYTVAL 179

Query: 385 VDWADVRDVISAICYI---PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK--KTS 439
                 R   SA   +   P        S+  T   +K    D     + +        +
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239

Query: 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF--------KGLPKSGSQMSASF 491
           G   T       E     + S     +I   ++ + K+        K      +    +F
Sbjct: 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAF 299

Query: 492 TTTGKHIISIGDDCRVYVWN 511
              G  +   G    + V+N
Sbjct: 300 DKKGDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 3/105 (2%), Positives = 25/105 (23%)

Query: 317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376
             +     +  +        +   +                     +      +  ++  
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAK 276

Query: 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421
           + + +++++  A++      + +   G    +G        +   
Sbjct: 277 YDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 33/327 (10%), Positives = 68/327 (20%), Gaps = 63/327 (19%)

Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275
             +      +   + S  GRYL   G DG V +  +                       +
Sbjct: 56  TVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWM--------------KEPTTVAE 100

Query: 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL--SCSMDKTVR 333
           IK G                             +           +              
Sbjct: 101 IKIGS--------------------------EARSIETSKMEGWEDKYAIAGAYWPPQYV 134

Query: 334 MWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEK---RVVDWAD 389
           +      +   +           +++P      I  S      I  V E     +VD+ D
Sbjct: 135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194

Query: 390 ----------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439
                         +         + FI  +             + KL  ++    +   
Sbjct: 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANAR-NKLVVIDTKEGKLVAIEDTGGQTPH 253

Query: 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 499
             +                   D  + ++      H       +   + +     G  + 
Sbjct: 254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP----DNAWKILDSFPALGGGSLF 309

Query: 500 SIGDDCRVYVWNYDELCFPSSKQKNSV 526
                   Y++  D    P ++   SV
Sbjct: 310 IKTHPNSQYLY-VDATLNPEAEISGSV 335

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 14/166 (8%), Positives = 47/166 (28%), Gaps = 14/166 (8%)

Query: 360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419
           +++ + ++    G++ +       +    D    +        G+   V    G  +   
Sbjct: 30  LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMID 89

Query: 420 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG 479
                 +   V        + +  T      ++   I       +  I+DG  +  K   
Sbjct: 90  L--WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147

Query: 480 LPKSGSQMSASFTTTGKH------------IISIGDDCRVYVWNYD 513
             +  +     +    +             I+++ +  ++ + +Y 
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 7/95 (7%)

Query: 317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376
            + +          TV M   G N+             +   P     +++ S    V +
Sbjct: 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSV 270

Query: 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
                  +     V          P   G  +GSI
Sbjct: 271 IDTATNTITATMAVGKN-------PYASGQFIGSI 298

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 29/275 (10%), Positives = 68/275 (24%), Gaps = 30/275 (10%)

Query: 214 TSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHV-------------------TS 253
           T  ++    G +  +  SPD RYL      +  V  + +                   T 
Sbjct: 28  TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH 87

Query: 254 VAAS-----CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH 308
           ++           + + G  S  +               +          ++    +   
Sbjct: 88  ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL 147

Query: 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368
           K D + L   + +  L       V   +    + +    +  Y  CV       + +   
Sbjct: 148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 207

Query: 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428
              G +      +    +++D R              +           +  S +   L 
Sbjct: 208 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 267

Query: 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463
           K  F      +  +  G        + ++   + S
Sbjct: 268 KEGFQ----PTETQPRGFNVDHSG-KYLIAAGQKS 297

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	667
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.63
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.62
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.56
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.28
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.27
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.2
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.07
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.93
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.93
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.9
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.84
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.83
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.81
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.77
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.66
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.58
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.57
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.49
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.4
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.4
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.37
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.35
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.02
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.93
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.3
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.16
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.96
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.73
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.36
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.15
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.08
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.05
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.89
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.72
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.71
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.68
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.44
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.39
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.62
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.28
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.27
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.13
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	92.12
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.84
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.66
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.42
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.41
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.38
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.5
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.4
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.23
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.83
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.98
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.46
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	82.51

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=299.77  Aligned_cols=276  Identities=14%  Similarity=0.217  Sum_probs=229.3

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      +++ .|...|++|+|+|+|++||||+ ||.|+|||+.+....                                      
T Consensus        46 ~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~--------------------------------------   85 (337)
T d1gxra_          46 NTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK--------------------------------------   85 (337)
T ss_dssp             EEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC--------------------------------------
T ss_pred             EEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc--------------------------------------
Confidence            344 7999999999999999999987 899999999863211                                      


Q ss_pred             cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCCCCEEEEEecC
Q 005956          296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSID  371 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~D  371 (667)
                        .........+|.+.|.+++|+|++ +|++++.|++|++||+....  ....+ .|...+.+++|+| ++.++++++.|
T Consensus        86 --~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d  162 (337)
T d1gxra_          86 --SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSD  162 (337)
T ss_dssp             --SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETT
T ss_pred             --ceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence              001123345799999999999999 99999999999999987543  44444 3888999999999 99999999999


Q ss_pred             CeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          372 GKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       372 g~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      +.|++||+.+++... ...+...+.+++|++++..+++|+.||.+++||+++.+.... .       .+...|++++|+|
T Consensus       163 ~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~-~-------~~~~~i~~l~~~~  234 (337)
T d1gxra_         163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-H-------DFTSQIFSLGYCP  234 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-E-------ECSSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccceeecc-c-------ccccceEEEEEcc
Confidence            999999999988765 556788999999999999999999999999999987764321 1       1247899999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCcccee
Q 005956          451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  530 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~  530 (667)
                      ++ .++++++.|+.|++||+..... +....|...|.+++|+|+|++|++++.||.|++||+.+++..........+.++
T Consensus       235 ~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~  312 (337)
T d1gxra_         235 TG-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC  312 (337)
T ss_dssp             TS-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             cc-cccceecccccccccccccccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEE
Confidence            96 8899999999999999875543 344558899999999999999999999999999999998876555455566677


Q ss_pred             EEccCCcEEEEecC
Q 005956          531 HFFSEGVSVAVQWP  544 (667)
Q Consensus       531 ~fs~dg~~lav~w~  544 (667)
                      .|+|+|++||++..
T Consensus       313 ~~s~d~~~l~t~s~  326 (337)
T d1gxra_         313 DISVDDKYIVTGSG  326 (337)
T ss_dssp             EECTTSCEEEEEET
T ss_pred             EEeCCCCEEEEEeC
Confidence            99999999988643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-33  Score=287.18  Aligned_cols=283  Identities=19%  Similarity=0.334  Sum_probs=240.3

Q ss_pred             ccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956          209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  288 (667)
Q Consensus       209 ~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (667)
                      .++....++|+||+++|++|+|+|++++||||+.||+|+|||+.+                                   
T Consensus         4 ~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-----------------------------------   48 (317)
T d1vyhc1           4 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-----------------------------------   48 (317)
T ss_dssp             CCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-----------------------------------
T ss_pred             CCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------------------------
Confidence            344555678999999999999999999999999999999999986                                   


Q ss_pred             ecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEE
Q 005956          289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~  366 (667)
                                .+.+.++.+|...|.+++|++++ .+++++.++++.+|+....+....+. |...+.++.|+| +++.++
T Consensus        49 ----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  117 (317)
T d1vyhc1          49 ----------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIV  117 (317)
T ss_dssp             ----------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEE
T ss_pred             ----------CCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccC-CCceEE
Confidence                      34577888999999999999999 99999999999999998887776664 888999999999 999999


Q ss_pred             EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      +++.|+.+++||+.+++... +..+...+.+++|+|++++|++++.||.+++|++.+......   +    ..+...+.+
T Consensus       118 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~---~----~~~~~~i~~  190 (317)
T d1vyhc1         118 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE---L----REHRHVVEC  190 (317)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---E----CCCSSCEEE
T ss_pred             eeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEE---E----ecCCCCceE
Confidence            99999999999999987664 567888999999999999999999999999999987765432   1    223467888


Q ss_pred             EEEccCC-------------------CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005956          446 IQFSRDE-------------------SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  506 (667)
Q Consensus       446 l~~sp~g-------------------~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~  506 (667)
                      +.|+|++                   ..++++++.|+.|++||..+.........|...|.+++|+|++++|++|+.||.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  270 (317)
T d1vyhc1         191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT  270 (317)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             EEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe
Confidence            8887763                   247899999999999998866555555558899999999999999999999999


Q ss_pred             EEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecC
Q 005956          507 VYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       507 I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      |+|||+.+++..... .+...+.++.|+|++.+|+++..
T Consensus       271 i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~  309 (317)
T d1vyhc1         271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV  309 (317)
T ss_dssp             EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            999999988765443 23455677899999998887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.4e-34  Score=292.25  Aligned_cols=248  Identities=20%  Similarity=0.380  Sum_probs=208.5

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      +...++|+||+++|++|+|+|++++||||+.||+|+|||+.++                                     
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~-------------------------------------   87 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-------------------------------------   87 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT-------------------------------------
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc-------------------------------------
Confidence            4556789999999999999999999999999999999999863                                     


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe----EeEE---------------------
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNV---------------------  345 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~----~~~~---------------------  345 (667)
                              +.+..+.+|...|.+++|+|++ ++++++.|+++++|+.....    ....                     
T Consensus        88 --------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (340)
T d1tbga_          88 --------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT  159 (340)
T ss_dssp             --------EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEE
T ss_pred             --------eeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccc
Confidence                    4467788999999999999999 99999999999999864321    1100                     


Q ss_pred             ---------------------eeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCC
Q 005956          346 ---------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDG  403 (667)
Q Consensus       346 ---------------------~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg  403 (667)
                                           ..+...+....+.+ ...++++|+.|+.|++||+++++.+. +..|...|++++|+|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~  238 (340)
T d1tbga_         160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG  238 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCC
Confidence                                 01344567777777 88899999999999999999988765 66788999999999999


Q ss_pred             CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCC
Q 005956          404 KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS  483 (667)
Q Consensus       404 ~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~  483 (667)
                      ++|++|+.||.|++||++....... ..    ...+...|++++|+|++ .+|++++.||.|++||+.+.........|.
T Consensus       239 ~~l~s~s~d~~i~~~~~~~~~~~~~-~~----~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         239 NAFATGSDDATCRLFDLRADQELMT-YS----HDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEE-EC----CTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             CEEEEEeCCCeEEEEeecccccccc-cc----cccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCcEEEEEcCCC
Confidence            9999999999999999987654332 11    22335779999999996 899999999999999988655555555588


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          484 GSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       484 ~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      ..|.+++|+|++++|++|+.||.|+|||
T Consensus       313 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         313 NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.1e-33  Score=286.51  Aligned_cols=257  Identities=20%  Similarity=0.264  Sum_probs=207.3

Q ss_pred             cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956          210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  289 (667)
Q Consensus       210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (667)
                      ......+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+...                                 
T Consensus        46 ~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~---------------------------------   92 (311)
T d1nr0a1          46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------------------------   92 (311)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------------------------
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc---------------------------------
Confidence            34455667889999999999999999999999999999999986321                                 


Q ss_pred             cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCC-E
Q 005956          290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN-Y  364 (667)
Q Consensus       290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~-~  364 (667)
                                .....+.+|...|.+++|+|++ +|++++.  +..++||++++++....+. |...|++++|+| ++. .
T Consensus        93 ----------~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~  161 (311)
T d1nr0a1          93 ----------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFR  161 (311)
T ss_dssp             ----------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCE
T ss_pred             ----------ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccc-cceee
Confidence                      1234577899999999999999 7888875  4669999999998877775 888999999999 665 5


Q ss_pred             EEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956          365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       365 l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I  443 (667)
                      |++|+.|+.|++||+++++... ...|...|++++|+|+++++++++.||.+++||+.+................|...|
T Consensus       162 l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V  241 (311)
T d1nr0a1         162 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  241 (311)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             ecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            8899999999999999988765 567788999999999999999999999999999987765433111122234567899


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeEEeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ++++|+|++ .+|++++.||.|+|||..+..  +.+..+. ....+.++.  +++.+|++++.||.|++||.+
T Consensus       242 ~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~--~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         242 FGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII--WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE--ECSSCEEEEETTCCEEEEETT
T ss_pred             cccccCCCC-CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE--ecCCEEEEEECCCEEEEEeCC
Confidence            999999996 899999999999999987543  3444321 122344444  456789999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-32  Score=287.84  Aligned_cols=295  Identities=19%  Similarity=0.265  Sum_probs=223.5

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      +|++.|+||+|+|||++||+|+ |++|+|||+.++.............                           .....
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~---------------------------~~~~~  111 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------------KDPEN  111 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc---------------------------ccccc
Confidence            6999999999999999999986 8999999998765433211110000                           00001


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      .......+|...|++++|+|++ +|++|+.||+|++||...++.+..+. |...|.++.|++ ++..+++++.++.+++|
T Consensus       112 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~  190 (388)
T d1erja_         112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW  190 (388)
T ss_dssp             -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             cccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccc-ccccccccccceeeeee
Confidence            1223445788999999999999 99999999999999999999888775 899999999999 89999999999999999


Q ss_pred             ecCCCeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          378 GVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       378 dl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                      |+.+........+.....++.+.+ ++++|++|+.||.|++||..+................|...|++++|+|++ .+|
T Consensus       191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l  269 (388)
T d1erja_         191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSV  269 (388)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEE
T ss_pred             eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC-CEE
Confidence            999988877666666667777766 789999999999999999987766543222222234467899999999996 899


Q ss_pred             EEEeCCCcEEEEECCcce------------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--c
Q 005956          457 MITSEDSKLRILDGVDVI------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--Q  522 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~~~~------------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~  522 (667)
                      ++++.|+.|++||+....            .......|...|.+++|+|++++|++|+.||.|+|||+.+++.....  |
T Consensus       270 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence            999999999999975321            12223347889999999999999999999999999999998765432  3


Q ss_pred             ccCccc-----eeEEccCCcEEEEecC
Q 005956          523 KNSVRS-----CEHFFSEGVSVAVQWP  544 (667)
Q Consensus       523 ~~~~~~-----~~~fs~dg~~lav~w~  544 (667)
                      ...+..     ...|+|++.+||++..
T Consensus       350 ~~~V~~~~~~~~~~~spd~~~l~s~s~  376 (388)
T d1erja_         350 RNSVISVAVANGSSLGPEYNVFATGSG  376 (388)
T ss_dssp             SSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             CCCEEEEEEecCcccCCCCCEEEEEeC
Confidence            333222     1247788888887654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-32  Score=284.45  Aligned_cols=242  Identities=21%  Similarity=0.343  Sum_probs=213.6

Q ss_pred             eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956          217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  296 (667)
Q Consensus       217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (667)
                      ...+|.+.|++|+|+|||++|++|+.||.|++||+....                                         
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~-----------------------------------------  130 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-----------------------------------------  130 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------------------------------------
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc-----------------------------------------
Confidence            456899999999999999999999999999999987521                                         


Q ss_pred             ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                        ......+.+|...|.+++|+|++ ++++++.|+.|++|++.++++..... |...|++++|++ ++..+++++.|+.|
T Consensus       131 --~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v  207 (337)
T d1gxra_         131 --PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTV  207 (337)
T ss_dssp             ---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             --ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence              12345677899999999999999 99999999999999999999887775 889999999999 99999999999999


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      ++||+++++.+....+...|.+++|+|+++.+++|+.+|.+++||++......        ...|...|++++|+|++ .
T Consensus       208 ~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------~~~~~~~i~~v~~s~~g-~  278 (337)
T d1gxra_         208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ--------LHLHESCVLSLKFAYCG-K  278 (337)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE--------ECCCSSCEEEEEECTTS-S
T ss_pred             cccccccceeecccccccceEEEEEcccccccceecccccccccccccccccc--------ccccccccceEEECCCC-C
Confidence            99999999998888899999999999999999999999999999998766432        12345789999999996 7


Q ss_pred             EEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          455 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      +|++++.|+.|++||........... |...|.+++|+|++++|++|+.||+|+|||+
T Consensus       279 ~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         279 WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999987654444432 7789999999999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-32  Score=278.31  Aligned_cols=278  Identities=18%  Similarity=0.211  Sum_probs=210.6

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce------------eeeeeCCCCCccccCCCCeEEeccc
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA------------SCKSFTDDGGFGSNAKEGKIKFGKK  281 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  281 (667)
                      +.++++||.++|++|+|+|||++||||+.||+|+|||+.++..            .++.+.+++.+++...++.+.++..
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence            4678999999999999999999999999999999999986532            3344555555554455555555443


Q ss_pred             CCCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCC
Q 005956          282 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID  361 (667)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d  361 (667)
                      .....            .........|...+.+++|++++.+++++.++.+++|+...   .........+.+++|+| +
T Consensus        84 ~~~~~------------~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~-~  147 (299)
T d1nr0a2          84 GGSGV------------DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISYNSSCVALSN-D  147 (299)
T ss_dssp             SSSSS------------CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSSCEEEEEECT-T
T ss_pred             CCccc------------ccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccc-c
Confidence            22111            11223344677889999999999555566678999998542   22334556789999999 9


Q ss_pred             CCEEEEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956          362 DNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  439 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~  439 (667)
                      +++|++|+.|+.|++||+.+++...  ...|...|++++|+|++++|++++.+|.|++||+.+.........    ...|
T Consensus       148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~----~~~h  223 (299)
T d1nr0a2         148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS----WTFH  223 (299)
T ss_dssp             SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC----CCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccc
Confidence            9999999999999999999887543  556788999999999999999999999999999987654332111    2335


Q ss_pred             CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956          440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ...|++++|+|++ .+|++++.|+.|++||+...  ........|. ..+..+ +++++++|++++.|+.|+|||+.
T Consensus       224 ~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         224 TAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccc-cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEecc
Confidence            6889999999996 89999999999999998743  2223333333 445555 45678899999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-31  Score=273.91  Aligned_cols=268  Identities=15%  Similarity=0.169  Sum_probs=213.0

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  299 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (667)
                      .+.+.+..++++|+|+.||.++ ++.|.+|++.+                                             .
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~---------------------------------------------~   48 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS---------------------------------------------L   48 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC---------------------------------------------S
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC---------------------------------------------C
Confidence            4566777899999999999986 56799999985                                             3


Q ss_pred             CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEe--EEe-eCCCcEEEEEEeeCCCCEEEEEecC--Ce
Q 005956          300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL--NVF-DHHNYVTCVQFNPIDDNYFISGSID--GK  373 (667)
Q Consensus       300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~--~~~-~h~~~V~~l~f~p~d~~~l~sgs~D--g~  373 (667)
                      .....+.+|...|++++|+|++ +|++|+.||+|+|||+.++...  ..+ .|...|.+++|+| ++++|++++.+  ..
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~  127 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERF  127 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCS
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccc-ccccccccccccccc
Confidence            4567788999999999999999 9999999999999999887644  334 3889999999999 99999998864  56


Q ss_pred             EEEEecCCCeEEE-ecccCCceEEEEEeeCCCE-EEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       374 v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~-l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      +++|++.+++... +..|...|++++|+|++++ |++|+.||.|++||+++.+....       ...|...|+++.|+|+
T Consensus       128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~-------~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST-------FGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE-------ECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccccceeeecccccccccccccccccccccc-------cccccccccccccCcc
Confidence            9999999887654 5678889999999999885 77899999999999987654322       2234578999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCccee--eEEe-----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--c
Q 005956          452 ESQRIMITSEDSKLRILDGVDVIH--KFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--Q  522 (667)
Q Consensus       452 g~~~l~~~s~dg~I~iwd~~~~~~--~~~~-----~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~  522 (667)
                      + .++++++.|+.|++||......  .+..     ..|...|.+++|+|++++|++|+.||.|+|||+.+++.....  +
T Consensus       201 ~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         201 G-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            6 8999999999999999875332  2221     236788999999999999999999999999999988764432  2


Q ss_pred             ccCccceeEEccCCcEEEEe
Q 005956          523 KNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       523 ~~~~~~~~~fs~dg~~lav~  542 (667)
                      .........+.+++..++++
T Consensus       280 ~~~~~~~~~~~~~~~~l~s~  299 (311)
T d1nr0a1         280 TRIEDQQLGIIWTKQALVSI  299 (311)
T ss_dssp             SSGGGCEEEEEECSSCEEEE
T ss_pred             CCccceEEEEEecCCEEEEE
Confidence            22222333444445545443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-31  Score=280.30  Aligned_cols=249  Identities=17%  Similarity=0.275  Sum_probs=202.6

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  300 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (667)
                      +..+|+|++|+|||++||+|+.||.|+|||+.+...                                           .
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-------------------------------------------~   42 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------------------------------V   42 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------------------------------E
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-------------------------------------------E
Confidence            457899999999999999999999999999875321                                           2


Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      .+..+.+|.+.|.+|+|+|++ +|++++.|++|+|||+.++.....+   .|...|++++|+| ++++|++|+.|++|++
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i  121 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISI  121 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc-ccccceeecccCccee
Confidence            356788999999999999998 9999999999999999887655443   4788999999999 9999999999999999


Q ss_pred             EecCCCeE-----EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeE-----------eeccccCcCC
Q 005956          377 WGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV-----------DFHDRKKTSG  440 (667)
Q Consensus       377 wdl~~~~~-----~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~-----------~~~~~~~~~~  440 (667)
                      |++.....     .....+...|.+++|+|++++|++|+.||.+++|+...........           ........+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (371)
T d1k8kc_         122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  201 (371)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             eeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc
Confidence            99876432     1244578899999999999999999999999999987543221100           0011123456


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956          441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~  515 (667)
                      ..|++++|+|+| .+|++++.|+.|++||............|..+|.+++|+|++++|++|+ |+.+++|..+..
T Consensus       202 ~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         202 GWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             SCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred             CcEEEEEeeccc-ccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence            789999999996 7899999999999999876555555555888999999999998888765 777778776554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.3e-30  Score=264.85  Aligned_cols=287  Identities=14%  Similarity=0.096  Sum_probs=218.7

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      .+.+.+++|++.|++|+|+|++++||+|+.||+|+|||+......                                   
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-----------------------------------   46 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-----------------------------------   46 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-----------------------------------
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-----------------------------------
Confidence            456788999999999999999999999999999999999752211                                   


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sg  368 (667)
                             ..+....+|..+|.+++|+|++  +|++|+.|++|++|++..........  +........+.+ +...++++
T Consensus        47 -------~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  118 (342)
T d1yfqa_          47 -------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAA  118 (342)
T ss_dssp             -------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEE
T ss_pred             -------eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccc-cccccccc
Confidence                   1123344799999999999865  89999999999999999887766664  333445555666 88999999


Q ss_pred             ecCCeEEEEecCCCeEE----E-e--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956          369 SIDGKVRIWGVCEKRVV----D-W--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  441 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~----~-~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~  441 (667)
                      +.++++++||++.....    . .  .........+.+.+++..+++++.||.|++||+..............    ...
T Consensus       119 ~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~  194 (342)
T d1yfqa_         119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG----LKY  194 (342)
T ss_dssp             ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS----CSS
T ss_pred             ccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecc----ccc
Confidence            99999999998654321    1 1  11233456677888999999999999999999987765544222211    235


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--------eeEE-------eCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGVDVI--------HKFK-------GLPKSGSQMSASFTTTGKHIISIGDDCR  506 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--------~~~~-------~~~~~~~v~~v~~spdg~~l~sgs~Dg~  506 (667)
                      .+.+..+.+.+...+++++.||.+.+|+.....        ..+.       ...|...+.+++|+|++++||+|+.||.
T Consensus       195 ~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE
Confidence            567777777656899999999999999854211        1111       1235667899999999999999999999


Q ss_pred             EEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956          507 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  546 (667)
Q Consensus       507 I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~  546 (667)
                      |+|||+++++..............+|+|+|.++|++.+.+
T Consensus       275 v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         275 ISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             EEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred             EEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCC
Confidence            9999999987655444444556789999999999987655

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5e-30  Score=270.15  Aligned_cols=250  Identities=24%  Similarity=0.418  Sum_probs=205.4

Q ss_pred             eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      ..+|...|++++|+|+|++|++|+.||.|++|+....                                           
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~-------------------------------------------  153 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-------------------------------------------  153 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------------------------------
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccc-------------------------------------------
Confidence            4579999999999999999999999999999998852                                           


Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                        +.+..+.+|...|.++.|++++ .+++++.++.|++||+.+........+.....++.+.+.++++|++|+.|+.|++
T Consensus       154 --~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  231 (388)
T d1erja_         154 --KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV  231 (388)
T ss_dssp             --EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred             --ccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEE
Confidence              3456677899999999999998 9999999999999999999998888888888888888878999999999999999


Q ss_pred             EecCCCeEEE--------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEe-----eccccCcCCCCe
Q 005956          377 WGVCEKRVVD--------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD-----FHDRKKTSGNKI  443 (667)
Q Consensus       377 wdl~~~~~~~--------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~-----~~~~~~~~~~~I  443 (667)
                      ||+.++....        ...|...|++++|+|++++|++|+.||.|++||+...........     .......|...|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  311 (388)
T d1erja_         232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV  311 (388)
T ss_dssp             EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE
T ss_pred             eecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceE
Confidence            9999877553        234678899999999999999999999999999986554322100     011122346789


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEE------cCCCCEEEEEeCCCcEEEEEcC
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF------TTTGKHIISIGDDCRVYVWNYD  513 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~------spdg~~l~sgs~Dg~I~iWd~~  513 (667)
                      ++++|+|++ .+|++++.||.|++||+.+.........|...|.++++      +|++++||+|+.||+|+||+++
T Consensus       312 ~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         312 LSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999996 89999999999999998855444444448899999875      6789999999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=259.09  Aligned_cols=271  Identities=18%  Similarity=0.301  Sum_probs=215.2

Q ss_pred             ceeeccccccE-EEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          215 SQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       215 ~~~l~~H~~~I-~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      ..+|+||.+.| +|++|  ++++||||+.||+|+|||+.+                                        
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~----------------------------------------   42 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------------------   42 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT----------------------------------------
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC----------------------------------------
Confidence            56799999886 56655  578999999999999999986                                        


Q ss_pred             cccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEec
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSI  370 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~  370 (667)
                           .+.+.++.+|.+.|++++|+|+++|++|+.|++|++|++...++.....   +...+....+.+ ++.++++++.
T Consensus        43 -----~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  116 (355)
T d1nexb2          43 -----KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSR  116 (355)
T ss_dssp             -----TEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEET
T ss_pred             -----CcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccccccccccccccccc-ccceeeeecC
Confidence                 3457788999999999999998899999999999999999998877764   333455667777 8899999999


Q ss_pred             CCeEEEEecCCCeEEEeccc----------------------CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956          371 DGKVRIWGVCEKRVVDWADV----------------------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~~~~~----------------------~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      |+.|++||+.+.........                      ........+.++++.++++..|+.+++||+.+.+....
T Consensus       117 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  196 (355)
T d1nexb2         117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI  196 (355)
T ss_dssp             TSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceee
Confidence            99999999987653321100                      00112345667899999999999999999987654322


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  508 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~  508 (667)
                             ...+...+.++.|+|++ .++++++.|+.|++||..+.........|...|.+++++  +++|++|+.||.|+
T Consensus       197 -------~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~  266 (355)
T d1nexb2         197 -------LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIR  266 (355)
T ss_dssp             -------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEE
T ss_pred             -------eeccccccccccccccc-eeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccc
Confidence                   12234678999999985 799999999999999988766655566688999999986  46999999999999


Q ss_pred             EEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956          509 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       509 iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      +||+.+.......+.........|++++.+++.+.
T Consensus       267 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  301 (355)
T d1nexb2         267 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS  301 (355)
T ss_dssp             EEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE
T ss_pred             cccccccceecccccCCceEEEEEcCCCCEEEEEe
Confidence            99999987766667667777778899999888765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.4e-29  Score=265.05  Aligned_cols=251  Identities=14%  Similarity=0.222  Sum_probs=195.8

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+.|++|.++|++|+|+|++++||+|+.|++|+|||+.+...                                    
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~------------------------------------   85 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW------------------------------------   85 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE------------------------------------
T ss_pred             EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc------------------------------------
Confidence            34567889999999999999999999999999999999975321                                    


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-----eCCCcEEEEEEeeCCCCEEE
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-----~h~~~V~~l~f~p~d~~~l~  366 (667)
                             .+...+.+|...|.+++|+|++ .|++++.|++|++|++.........     .|...|.+++|+| ++.+|+
T Consensus        86 -------~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~  157 (371)
T d1k8kc_          86 -------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLA  157 (371)
T ss_dssp             -------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEE
T ss_pred             -------ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-ccccee
Confidence                   2344566899999999999999 9999999999999998765432222     3788999999999 999999


Q ss_pred             EEecCCeEEEEecCCCe-------------------EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee
Q 005956          367 SGSIDGKVRIWGVCEKR-------------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  427 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~-------------------~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~  427 (667)
                      +|+.|++|++||+....                   ......+...|.+++|+|+|+.|++++.||.|++||+.......
T Consensus       158 s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~  237 (371)
T d1k8kc_         158 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  237 (371)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccccee
Confidence            99999999999986432                   22345677889999999999999999999999999998765433


Q ss_pred             eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE--CCcceeeEE---------------------------
Q 005956          428 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GVDVIHKFK---------------------------  478 (667)
Q Consensus       428 ~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd--~~~~~~~~~---------------------------  478 (667)
                      . +.      .+..+|++++|+|++ .+|+ ++.|+.+++|.  .......+.                           
T Consensus       238 ~-~~------~~~~~v~s~~fs~d~-~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (371)
T d1k8kc_         238 T-LA------SETLPLLAVTFITES-SLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA  308 (371)
T ss_dssp             E-EE------CSSCCEEEEEEEETT-EEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred             e-ee------cccccceeeeecCCC-CEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEeccccee
Confidence            2 22      234789999999996 5554 55677766654  221111000                           


Q ss_pred             ------------eCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcCCCC
Q 005956          479 ------------GLPKSGSQMSASFTTTG----KHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       479 ------------~~~~~~~v~~v~~spdg----~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                                  ...|.+.|.++++.+.+    ..|+|+|.||.|+|||+++.+
T Consensus       309 ~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~  362 (371)
T d1k8kc_         309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  362 (371)
T ss_dssp             ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             EEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence                        01267789999997754    368999999999999996643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.8e-28  Score=248.05  Aligned_cols=246  Identities=24%  Similarity=0.390  Sum_probs=211.2

Q ss_pred             cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ....+++++|.+.|++++|+|++.++++++.++.+.+|+....                                     
T Consensus        49 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------   91 (317)
T d1vyhc1          49 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-------------------------------------   91 (317)
T ss_dssp             CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-------------------------------------
T ss_pred             CCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc-------------------------------------
Confidence            3445678899999999999999999999999999999998752                                     


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                              .....+.+|...+.++.|++++ .+++++.|+.+++||+.+++.+..+. |...+.+++|+| ++.+|++++
T Consensus        92 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  162 (317)
T d1vyhc1          92 --------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCS  162 (317)
T ss_dssp             --------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             --------ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEe
Confidence                    3345566889999999999998 99999999999999999999888876 888999999999 999999999


Q ss_pred             cCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCC--------------------CEEEEEecCCcEEEEEecCCcceee
Q 005956          370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDG--------------------KGFIVGSITGTCHFYKASGNDLKLE  428 (667)
Q Consensus       370 ~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg--------------------~~l~~gs~dg~i~l~d~~~~~~~~~  428 (667)
                      .|+.|++|++.+++... +..+...+.+++++|++                    ..+++|+.||.|++||++++.....
T Consensus       163 ~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence            99999999999987664 56778888888887754                    4688999999999999988765432


Q ss_pred             eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956          429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  508 (667)
Q Consensus       429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~  508 (667)
                       +      ..|...|++++|+|++ .+|++++.||.|+|||+.+.........|...|++++|+|++++|++|+.||+|+
T Consensus       243 -~------~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~  314 (317)
T d1vyhc1         243 -L------VGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK  314 (317)
T ss_dssp             -E------ECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             -E------eCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence             1      2235789999999996 8999999999999999875433333334889999999999999999999999999


Q ss_pred             EEE
Q 005956          509 VWN  511 (667)
Q Consensus       509 iWd  511 (667)
                      |||
T Consensus       315 iWd  317 (317)
T d1vyhc1         315 VWE  317 (317)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-27  Score=245.40  Aligned_cols=273  Identities=18%  Similarity=0.301  Sum_probs=201.3

Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      .+...++|+||++.|.+ +++++|++||||+.||+|+|||+.+                                     
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~-------------------------------------   46 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT-------------------------------------   46 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT-------------------------------------
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC-------------------------------------
Confidence            44566789999999876 4677899999999999999999986                                     


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEE---------------
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC---------------  354 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~---------------  354 (667)
                              .+++.++.+|...|.+++|+++ +|++++.|+++++|+........... +...+..               
T Consensus        47 --------~~~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  117 (342)
T d2ovrb2          47 --------GKCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA  117 (342)
T ss_dssp             --------CCEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred             --------CCEEEEEeCCCCCEEEEEeCCC-ccccceecccccccccccccceecccccceeEeeeecccccccccccce
Confidence                    3456788899999999999874 89999999999999987655433322 1111111               


Q ss_pred             -----------------------EEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEe
Q 005956          355 -----------------------VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGS  410 (667)
Q Consensus       355 -----------------------l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs  410 (667)
                                             ..+.+ ....++.++.|+.|++||+.....+. ...+...  ...+.+++..+++|+
T Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~s~~  194 (342)
T d2ovrb2         118 TLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR--VYSLQFDGIHVVSGS  194 (342)
T ss_dssp             EEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC--EEEEEECSSEEEEEE
T ss_pred             eEEEeecccccceeeeecccccceeecc-ccceeeeecCCCeEEEeecccceeeEEEcCcccc--cccccCCCCEEEEEe
Confidence                                   12222 45667888888899999988877654 3444443  445567889999999


Q ss_pred             cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceee--EEe-CCCCCCeE
Q 005956          411 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKG-LPKSGSQM  487 (667)
Q Consensus       411 ~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~-~~~~~~v~  487 (667)
                      .||.|++||++.......       ...|...+.++.+++   .+|++++.|+.|++||.......  +.. ..|...+.
T Consensus       195 ~dg~i~~~d~~~~~~~~~-------~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  264 (342)
T d2ovrb2         195 LDTSIRVWDVETGNCIHT-------LTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT  264 (342)
T ss_dssp             TTSCEEEEETTTCCEEEE-------ECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEE
T ss_pred             CCCeEEEeecccceeeeE-------ecccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeecee
Confidence            999999999987765432       223346788888876   48999999999999998754333  332 22455666


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc------cccCccceeEEccCCcEEEEecCC
Q 005956          488 SASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK------QKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       488 ~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~------~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                      ++.++  ++++++|+.||.|+|||+.+++.....      .....+.+++|+|++.++|++...
T Consensus       265 ~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         265 CLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN  326 (342)
T ss_dssp             EEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred             ecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            66664  579999999999999999998764321      233456778999999998887544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.7e-28  Score=251.15  Aligned_cols=256  Identities=18%  Similarity=0.252  Sum_probs=192.5

Q ss_pred             ceeeccc-cccEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956          215 SQEIQAH-KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  291 (667)
Q Consensus       215 ~~~l~~H-~~~I~~v~fsp--dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (667)
                      ...+.+| ...|++++|+|  +|++||+|+.||+|+|||+.......                                 
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~---------------------------------  101 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---------------------------------  101 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---------------------------------
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCccee---------------------------------
Confidence            4456677 46899999998  67899999999999999987532110                                 


Q ss_pred             CCcccccCCcceeeeccccceEEEEecCCC-eEEEEe--CCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEE
Q 005956          292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s--~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~s  367 (667)
                          .+.......+..|.++|.+++|++++ +|++++  .++.+++|+.++++++..+. |...|.+++|+|....++++
T Consensus       102 ----~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1         102 ----SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             ----EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             ----eeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence                00111233466789999999999999 666655  47789999999999988886 89999999999944456888


Q ss_pred             EecCCeEEEEecCCCeEEE----ecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956          368 GSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  442 (667)
Q Consensus       368 gs~Dg~v~iwdl~~~~~~~----~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~  442 (667)
                      ++.|+.+++||+...+...    ...+...|.+++|+|+ +.+|++++.||.|++||+++++....   +.++.......
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~---l~~~~~~v~~~  254 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY---IEDDQEPVQGG  254 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE---CCBTTBCCCSC
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc---ccccccccccc
Confidence            9999999999998877543    2356677999999996 68899999999999999987765432   22333233344


Q ss_pred             eEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEc
Q 005956          443 ITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~Dg~I~iWd~  512 (667)
                      +.++.|. +| .+|++++.|+.|+|||+..  .+..+..+.+...+..+++.+. +.+|++++.||.|+|||+
T Consensus       255 ~~s~~~~-dg-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         255 IFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eeeeecc-CC-CEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            5555554 43 7899999999999999874  4555666555544444444332 358999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.1e-27  Score=242.53  Aligned_cols=237  Identities=17%  Similarity=0.289  Sum_probs=195.0

Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      .+..++|.||.+.|++|+|+|++ +|++|+.||+|+|||+.+++.+..+. |...|.+++|+| +++++++|+.|+.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeec
Confidence            35567899999999999999999 99999999999999999999998886 889999999999 9999999999999999


Q ss_pred             EecCCCeE----E-E-----------------------------------------ecccCCceEEEEEeeCCCEEEEEe
Q 005956          377 WGVCEKRV----V-D-----------------------------------------WADVRDVISAICYIPDGKGFIVGS  410 (667)
Q Consensus       377 wdl~~~~~----~-~-----------------------------------------~~~~~~~v~~v~~spdg~~l~~gs  410 (667)
                      |+......    . .                                         .......+....+.+.+..+++|+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            98654210    0 0                                         011223467778888899999999


Q ss_pred             cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeEEeCCCCCCeEE
Q 005956          411 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMS  488 (667)
Q Consensus       411 ~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~  488 (667)
                      .|+.+++||+++......       ...|...|++++|+|++ .+|++++.|+.|++||.....  ..+....+...+.+
T Consensus       204 ~d~~v~i~d~~~~~~~~~-------~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQT-------FTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             TTTEEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             cCceEEEEECCCCcEEEE-------EeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            999999999987765432       22345889999999996 899999999999999987543  34444556778999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecC
Q 005956          489 ASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       489 v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ++|+|++++|++|+.||.|+|||+.+++..... .+...+.++.|+|++.+||++..
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence            999999999999999999999999988765443 23456677899999998887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3e-27  Score=250.89  Aligned_cols=260  Identities=13%  Similarity=0.179  Sum_probs=183.7

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  295 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (667)
                      ...++|.+.|+++++++  ++|+||+.|++|+|||..+.+...                                     
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~-------------------------------------   48 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN-------------------------------------   48 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-------------------------------------
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc-------------------------------------
Confidence            45679999999999875  599999999999999977532100                                     


Q ss_pred             cccCCcceeeeccccc------eEEEEecCCC--eEEEEeCCCcEEEEecCCCeEe----E-Ee------eCCCcEEEEE
Q 005956          296 QIEESPLQELHGHKGD------VLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCL----N-VF------DHHNYVTCVQ  356 (667)
Q Consensus       296 ~~~~~~~~~l~gh~~~------V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~----~-~~------~h~~~V~~l~  356 (667)
                        ..........|...      ...+......  .+++++.||.|++|++......    . ..      .+...++.++
T Consensus        49 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (393)
T d1sq9a_          49 --PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK  126 (393)
T ss_dssp             --GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEE
T ss_pred             --ccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEE
Confidence              00011112223322      2223333322  6779999999999997543211    1 11      1455678888


Q ss_pred             EeeC----CCCEEEEEecCCeEEEEecCCCe-------------------EEEecccCCceEEEEEeeCCCEEEEEecCC
Q 005956          357 FNPI----DDNYFISGSIDGKVRIWGVCEKR-------------------VVDWADVRDVISAICYIPDGKGFIVGSITG  413 (667)
Q Consensus       357 f~p~----d~~~l~sgs~Dg~v~iwdl~~~~-------------------~~~~~~~~~~v~~v~~spdg~~l~~gs~dg  413 (667)
                      |.+.    .+.++++++.|+++++|++....                   ......+...+++++|+|++ +|++|+.||
T Consensus       127 ~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg  205 (393)
T d1sq9a_         127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG  205 (393)
T ss_dssp             EECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred             EecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCC
Confidence            8772    24689999999999999985321                   00122344568999999998 899999999


Q ss_pred             cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc---EEEEECCcce--eeEE----------
Q 005956          414 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK---LRILDGVDVI--HKFK----------  478 (667)
Q Consensus       414 ~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~---I~iwd~~~~~--~~~~----------  478 (667)
                      +|++||+.+++... .+........|..+|++++|+|+| .+|++++.|+.   |++||+....  ..+.          
T Consensus       206 ~i~iwd~~~~~~~~-~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~  283 (393)
T d1sq9a_         206 TVQISELSTLRPLY-NFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL  283 (393)
T ss_dssp             EEEEEETTTTEEEE-EEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred             cEEEEeeccccccc-ccccccccccccceEEEccccccc-ceeeeecCCCCcceeeecccccceeeeeecccccccccee
Confidence            99999998776543 233333344577899999999996 89999998874   8999987432  2221          


Q ss_pred             -eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          479 -GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       479 -~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                       ..+|...|++++|+|++++|+||+.|++|+|||++++++..
T Consensus       284 ~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence             12488899999999999999999999999999999986543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-26  Score=233.86  Aligned_cols=263  Identities=17%  Similarity=0.219  Sum_probs=198.8

Q ss_pred             cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC------ceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV------AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      +.++|++|.++|++|+|+|    |+||+.||+|++||+.++      ...++.+.++..+.....++.++++...     
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~-----   75 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT-----   75 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEE-----
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccccccc-----
Confidence            4678999999999999997    999999999999998753      2333444444444444444444443321     


Q ss_pred             eecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE
Q 005956          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s  367 (667)
                                       ...+...+..+++++++.++..+.++.+.+|+..+++.+..+.+...+.+  +++ +++.+++
T Consensus        76 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~v  135 (287)
T d1pgua2          76 -----------------KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA--VSL-SQNYVAV  135 (287)
T ss_dssp             -----------------EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE--EEE-CSSEEEE
T ss_pred             -----------------ccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeee--eec-cCcceee
Confidence                             01123457788889888666667777899999999999888887766654  556 6777777


Q ss_pred             EecCC-eEEEEecCCCeEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          368 GSIDG-KVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       368 gs~Dg-~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                      ++.++ .+++|++...+...  ...+...+++++|+|++.+|++|+.+|.|++||+.+.......      ...|..+|+
T Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------~~~h~~~v~  209 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR------WAFRTSKIN  209 (287)
T ss_dssp             EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC------SCCCSSCEE
T ss_pred             eccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc------ccccccccc
Confidence            77765 79999998766543  3346778999999999999999999999999999876654322      233458899


Q ss_pred             EEEEccCC---------CeEEEEEeCCCcEEEEECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956          445 GIQFSRDE---------SQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  512 (667)
Q Consensus       445 ~l~~sp~g---------~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~  512 (667)
                      +++|+|.+         ..++++++.|+.|+|||+.+....+. ...|...|.+++|+|++ .|++++.|+.|++|++
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99998853         36899999999999999865333222 33588999999999986 6889999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-26  Score=240.28  Aligned_cols=248  Identities=14%  Similarity=0.164  Sum_probs=188.7

Q ss_pred             cEEEEEEcCCCCEEEEEECCCc-EEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          224 CIWTLKFSPDGRYLASGGEDGV-VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~-I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      .+++++|+|+|+.||.++.+.. |+.|+....                                           ....+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~-------------------------------------------~~~~~   55 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS-------------------------------------------KVPPV   55 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCC-------------------------------------------SSCSE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC-------------------------------------------Cccce
Confidence            4678999999999999876543 455544321                                           12345


Q ss_pred             eeeeccc-cceEEEEecC--CC-eEEEEeCCCcEEEEecCCCeEe--------EEe-eCCCcEEEEEEeeCCCCEEEEEe
Q 005956          303 QELHGHK-GDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCL--------NVF-DHHNYVTCVQFNPIDDNYFISGS  369 (667)
Q Consensus       303 ~~l~gh~-~~V~~l~~s~--~~-~l~s~s~Dg~I~iWd~~~~~~~--------~~~-~h~~~V~~l~f~p~d~~~l~sgs  369 (667)
                      ..+.+|. ..|++++|+|  ++ +|++|+.||+|+|||+..++..        ..+ .|..+|.+++|++ ++.++++++
T Consensus        56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~  134 (325)
T d1pgua1          56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVG  134 (325)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceee
Confidence            6777874 6899999998  44 8899999999999998654321        112 3788999999999 899888776


Q ss_pred             c--CCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCE-EEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          370 I--DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       370 ~--Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~-l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      .  ++.+++|+..+++.+. +..|...|++++|+|++.. +++++.||.+++||....+.......    ...+...|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~----~~~~~~~v~~  210 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----HHKQGSFVRD  210 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----SSCTTCCEEE
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc----ccCCCCccEE
Confidence            4  6789999999888664 5678899999999998875 66789999999999876654432211    2345678999


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEc---CCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT---TTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s---pdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      ++|+|+++.++++++.|+.|++||+.+.........|...+..+.|+   |+|++|++++.|+.|+|||+.+++...
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            99999877899999999999999987554433333355555444443   789999999999999999999887543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3.4e-26  Score=231.98  Aligned_cols=234  Identities=16%  Similarity=0.182  Sum_probs=180.7

Q ss_pred             cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      ..+.+.||...|++|+|+|++ +|++|+.||+|++||+.++++++.+.  |...|++++|+| ++. +++++.|+.+++|
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEEe
Confidence            467889999999999999999 99999999999999999999988874  888999999999 776 5566789999999


Q ss_pred             ecCCCeE----------------EE-------------------------ecccCCceEEEEEeeCCCEEEEEecCCcEE
Q 005956          378 GVCEKRV----------------VD-------------------------WADVRDVISAICYIPDGKGFIVGSITGTCH  416 (667)
Q Consensus       378 dl~~~~~----------------~~-------------------------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~  416 (667)
                      ++.....                +.                         .......+.+++|+|+++++++|+.+|.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8643210                00                         001223478899999999999999999999


Q ss_pred             EEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee---eEEeCCCCCCeEEEEEcC
Q 005956          417 FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTT  493 (667)
Q Consensus       417 l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~sp  493 (667)
                      +||+++.........      .|...|++++|+|++ .+|++++.|+.|++||..+...   ......|...|.+++|+|
T Consensus       162 ~~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         162 VYKLSGASVSEVKTI------VHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             EEEEETTEEEEEEEE------ECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             ccccccccccccccc------ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            999987765432211      234789999999986 8899999999999999764322   122234788999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccc----ccccCccceeEEccCCcEEEEecC
Q 005956          494 TGKHIISIGDDCRVYVWNYDELCFPSS----KQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       494 dg~~l~sgs~Dg~I~iWd~~~~~~~~~----~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ++++|++|+.||.|+|||+.++.....    .+......++ +++++.+|+++..
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~  288 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQ  288 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEET
T ss_pred             cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeC
Confidence            999999999999999999988654221    2333444554 4455666666543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.4e-26  Score=233.84  Aligned_cols=264  Identities=19%  Similarity=0.296  Sum_probs=197.7

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  292 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (667)
                      ...+++++|+++|++|+|+|+ .+|++|+.||+|++|++.......                                  
T Consensus        44 ~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~----------------------------------   88 (355)
T d1nexb2          44 KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTH----------------------------------   88 (355)
T ss_dssp             EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEE----------------------------------
T ss_pred             cEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccc----------------------------------
Confidence            445778999999999999986 589999999999999998632211                                  


Q ss_pred             CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee------------------------
Q 005956          293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD------------------------  347 (667)
Q Consensus       293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~------------------------  347 (667)
                               ......+...+....+++++ .+++++.|++|++||+.+...+....                        
T Consensus        89 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          89 ---------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ---------EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             ---------ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence                     11112233445666777887 89999999999999998765443221                        


Q ss_pred             CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce
Q 005956          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  426 (667)
Q Consensus       348 h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~  426 (667)
                      |...+.  .+.+ ++++++++..|+.|++||+.+++.+. ...+...+.++.++|++..+++++.||.|++||+.++...
T Consensus       160 ~~~~v~--~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         160 HMASVR--TVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             CSSCEE--EEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEE
T ss_pred             cccccc--cccc-ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccc
Confidence            222333  3344 78899999999999999999988765 5567788999999999999999999999999999877654


Q ss_pred             eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEE-EEEcCCCCEEEEEeCCC
Q 005956          427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHIISIGDDC  505 (667)
Q Consensus       427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~-v~~spdg~~l~sgs~Dg  505 (667)
                      ..       ...|...|+++.+++   .+|++++.||.|++||+.+....+..+  ...+.+ ..+++++.+|++|+ |+
T Consensus       237 ~~-------~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~-d~  303 (355)
T d1nexb2         237 YT-------LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-EN  303 (355)
T ss_dssp             EE-------ECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEEE--CTTCCCCCEEEECSSEEEEEE-TT
T ss_pred             cc-------ccccccccccccccc---ceeeeeecccccccccccccceecccc--cCCceEEEEEcCCCCEEEEEe-CC
Confidence            32       223457899999976   489999999999999999888877774  344444 45677888777765 89


Q ss_pred             cEEEEEcCCCCcccc--ccccCccceeEEccCC
Q 005956          506 RVYVWNYDELCFPSS--KQKNSVRSCEHFFSEG  536 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~--~~~~~~~~~~~fs~dg  536 (667)
                      .|+|||+++++....  ......+.+++|+|+.
T Consensus       304 ~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~  336 (355)
T d1nexb2         304 QFNIYNLRSGKLVHANILKDADQIWSVNFKGKT  336 (355)
T ss_dssp             EEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE
T ss_pred             EEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe
Confidence            999999999876432  3344456677898864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-24  Score=216.46  Aligned_cols=238  Identities=19%  Similarity=0.263  Sum_probs=184.7

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+....|...|+|++  +||++||||+.||+|+|||+.+                                         
T Consensus         8 i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~-----------------------------------------   44 (293)
T d1p22a2           8 IHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNT-----------------------------------------   44 (293)
T ss_dssp             EECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSS-----------------------------------------
T ss_pred             EeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCC-----------------------------------------
Confidence            344567889999876  4799999999999999999986                                         


Q ss_pred             ccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  374 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v  374 (667)
                          .+++.++.+|.+.|++++|.+ .+|++|+.|++|++|++..+............... +.+ ....++++..++.+
T Consensus        45 ----~~~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~  117 (293)
T d1p22a2          45 ----LECKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH-LRF-NNGMMVTCSKDRSI  117 (293)
T ss_dssp             ----CCEEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE-EEC-CTTEEEEEETTSCE
T ss_pred             ----CcEEEEEecCCCCEeeeeccc-ceeeccccccccccccccccccccccccccccccc-ccc-cccceeecccccce
Confidence                355778899999999999842 39999999999999999999887777644433333 333 57789999999999


Q ss_pred             EEEecCCCeE----EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          375 RIWGVCEKRV----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       375 ~iwdl~~~~~----~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      ++||+.....    .....+...+..+.+.  ...+++++.|+.+++||+++.+....   +.    .+...+..+.+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~---~~----~~~~~v~~~~~~~  188 (293)
T d1p22a2         118 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRT---LN----GHKRGIACLQYRD  188 (293)
T ss_dssp             EEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEE---EE----CCSSCEEEEEEET
T ss_pred             eEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEE---Ec----ccccccccccCCC
Confidence            9999987552    2345566777766654  46788999999999999988765432   11    2235677777764


Q ss_pred             CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                         .++++++.|+.|++||+...........+...+..  +++++.+|++|+.||.|+|||+....
T Consensus       189 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         189 ---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             ---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred             ---CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCc
Confidence               48999999999999998866555555546666654  56788999999999999999986543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-23  Score=215.16  Aligned_cols=272  Identities=17%  Similarity=0.316  Sum_probs=193.6

Q ss_pred             ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCc----------cccCCCCeEEecccC
Q 005956          213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF----------GSNAKEGKIKFGKKK  282 (667)
Q Consensus       213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~  282 (667)
                      .+.+++.+|.+.|++++|+|+  +|++|+.|+.+++|+.................          .....++.+.++...
T Consensus        48 ~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  125 (342)
T d2ovrb2          48 KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE  125 (342)
T ss_dssp             CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred             CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecc
Confidence            455778999999999999975  99999999999999998654433222211111          111112222222111


Q ss_pred             CCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCC
Q 005956          283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPID  361 (667)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d  361 (667)
                      .               .+....+..+.... .........+++++.|+.|++||.....++..+. |...+.++.+   +
T Consensus       126 ~---------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~  186 (342)
T d2ovrb2         126 T---------------GQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---D  186 (342)
T ss_dssp             S---------------CCEEEEEECCSSCE-EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---C
T ss_pred             c---------------ccceeeeecccccc-eeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC---C
Confidence            1               11222232232222 2222333489999999999999999999888775 6666666655   6


Q ss_pred             CCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956          362 DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  440 (667)
Q Consensus       362 ~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~  440 (667)
                      +.++++|+.||.|++||++.++.+. ...|...+.+++++  +++|++|+.||.|++||+...+....   +.. ...+.
T Consensus       187 ~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~---~~~-~~~~~  260 (342)
T d2ovrb2         187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT---LQG-PNKHQ  260 (342)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE---ECS-TTSCS
T ss_pred             CCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccc---ccc-cceee
Confidence            7899999999999999999988765 56677778777654  57999999999999999987665432   111 23345


Q ss_pred             CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEe---CCCCCCeEEEEEcCCCCEEEEEeCCCc----EEEEE
Q 005956          441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCR----VYVWN  511 (667)
Q Consensus       441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~---~~~~~~v~~v~~spdg~~l~sgs~Dg~----I~iWd  511 (667)
                      ..+.++.+++   .++++++.||.|+|||+.+.  ++.+..   ..|...|.+++|+|++.+|++|+.||+    |++||
T Consensus       261 ~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         261 SAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             SCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             eceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence            6788888875   48999999999999998743  344432   235678999999999999999999985    99999


Q ss_pred             cCC
Q 005956          512 YDE  514 (667)
Q Consensus       512 ~~~  514 (667)
                      ++.
T Consensus       338 f~~  340 (342)
T d2ovrb2         338 FDV  340 (342)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=2.1e-24  Score=223.52  Aligned_cols=249  Identities=8%  Similarity=0.049  Sum_probs=192.0

Q ss_pred             cccccEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  297 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (667)
                      +|.+.|.+++|+|||++|++++.+.  .|++||+.+                                            
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~--------------------------------------------   75 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--------------------------------------------   75 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT--------------------------------------------
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC--------------------------------------------
Confidence            6999999999999999999877654  799999985                                            


Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe------
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS------  369 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs------  369 (667)
                        .....+..|...|.+++|+|++ +|++++.++.+++|++.++++...+. |...+.+++|+| ++++|+.+.      
T Consensus        76 --~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~  152 (360)
T d1k32a3          76 --GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGE  152 (360)
T ss_dssp             --CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSST
T ss_pred             --CcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccc
Confidence              2345667899999999999999 99999999999999999999888876 777899999999 999998654      


Q ss_pred             ----cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee------eEeeccc----
Q 005956          370 ----IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE------KVDFHDR----  435 (667)
Q Consensus       370 ----~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~------~~~~~~~----  435 (667)
                          .++.+++||+.+++......+...+..++|+|||+.|++++.++.+.+|+.........      .+.++..    
T Consensus       153 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (360)
T d1k32a3         153 TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  232 (360)
T ss_dssp             TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             eeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCcccc
Confidence                34569999999999988888888999999999999999999999999998754322110      0111000    


Q ss_pred             --------------------------cCcCCCCeEEEEEccCCC------------eEEEEEeCCCcEEEEECCcceeeE
Q 005956          436 --------------------------KKTSGNKITGIQFSRDES------------QRIMITSEDSKLRILDGVDVIHKF  477 (667)
Q Consensus       436 --------------------------~~~~~~~I~~l~~sp~g~------------~~l~~~s~dg~I~iwd~~~~~~~~  477 (667)
                                                .....+....+...+++.            .++++++.++.|++||+...... 
T Consensus       233 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-  311 (360)
T d1k32a3         233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-  311 (360)
T ss_dssp             GGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-
T ss_pred             ceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-
Confidence                                      000112233444444320            12334456789999998754322 


Q ss_pred             EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          478 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       478 ~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                       .  +...|.+++|||||++|++++.||.|++||+++++...
T Consensus       312 -~--~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         312 -E--VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             -E--EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred             -E--ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence             1  33458999999999999999999999999999886543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.7e-22  Score=203.16  Aligned_cols=229  Identities=15%  Similarity=0.142  Sum_probs=170.3

Q ss_pred             CCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      .++++++.||..+|++|+|+|   |+||+.||+|++||+.++.    ..|...|.+++|.+  +..+++++.|+++++|+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~--~~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSK--AQEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT---TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCS--TTCCEEEETTTEEEETT
T ss_pred             cceeEEECCCCCceEEEEECc---EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecC--CCeEEEEeecccccccc
Confidence            367899999999999999998   9999999999999987643    35889999999986  45688999999999998


Q ss_pred             cCCCeE------------------------EEeccc--------CCceEEEEEeeCCCEEEEEecCC-cEEEEEecCCcc
Q 005956          379 VCEKRV------------------------VDWADV--------RDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDL  425 (667)
Q Consensus       379 l~~~~~------------------------~~~~~~--------~~~v~~v~~spdg~~l~~gs~dg-~i~l~d~~~~~~  425 (667)
                      +...+.                        ..+...        .......++++++..+++++.++ .+++|++.....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~  153 (287)
T d1pgua2          74 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV  153 (287)
T ss_dssp             EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             ccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce
Confidence            653210                        000000        01123456778889999988875 699999865433


Q ss_pred             eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEE-eCCCCCCeEEEEEcCC----------
Q 005956          426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTT----------  494 (667)
Q Consensus       426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~spd----------  494 (667)
                      ...   .   ...+...+++++|+|++ .+|++++.||.|++||..+...... ...|...|.+++|+|+          
T Consensus       154 ~~~---~---~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~  226 (287)
T d1pgua2         154 SFD---L---KTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE  226 (287)
T ss_dssp             EEE---C---SSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             eee---e---eeccCCceeEEEeccCc-cccccccccccccceeecccccccccccccccccceeeecccccccccccCC
Confidence            221   1   22345789999999996 8999999999999999886544332 3447889999999875          


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCcccc--ccccCccceeEEccCCcEEEEec
Q 005956          495 GKHIISIGDDCRVYVWNYDELCFPSS--KQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       495 g~~l~sgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      +.+|++|+.|+.|+|||+..+.....  ..+...+..+.|+|++.+++.++
T Consensus       227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~  277 (287)
T d1pgua2         227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA  277 (287)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEET
T ss_pred             CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEEC
Confidence            46899999999999999977543222  23344567779999887655544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-21  Score=192.16  Aligned_cols=236  Identities=22%  Similarity=0.407  Sum_probs=173.1

Q ss_pred             ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956          211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  290 (667)
Q Consensus       211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (667)
                      ...+.++|++|++.|++|+|  ++++|+||+.||.|++|++..+..                                  
T Consensus        44 ~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~----------------------------------   87 (293)
T d1p22a2          44 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM----------------------------------   87 (293)
T ss_dssp             SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE----------------------------------
T ss_pred             CCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccc----------------------------------
Confidence            34456788999999999987  578999999999999999986322                                  


Q ss_pred             CCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE---e-eCCCcEEEEEEeeCCCCEEE
Q 005956          291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV---F-DHHNYVTCVQFNPIDDNYFI  366 (667)
Q Consensus       291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~---~-~h~~~V~~l~f~p~d~~~l~  366 (667)
                                 ......+.... .......+.++++..++.+++|+.........   + .|...|.++.+.   ...++
T Consensus        88 -----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~  152 (293)
T d1p22a2          88 -----------LNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIV  152 (293)
T ss_dssp             -----------EEEECCCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEE
T ss_pred             -----------ccccccccccc-ccccccccceeecccccceeEeeccccccccccccccccccccccceec---ccccc
Confidence                       11122222222 22233445899999999999999987653322   2 478888888875   46788


Q ss_pred             EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956          367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  445 (667)
Q Consensus       367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~  445 (667)
                      +++.|+.|++||+.+++.+. +..+...+..+.+  ++..+++++.||.|++||+++......   .    ..+...+..
T Consensus       153 ~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~---~----~~~~~~v~~  223 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV---L----EGHEELVRC  223 (293)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE---E----CCCSSCEEE
T ss_pred             cccCCCceeeecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccceeeee---e----cccceeeee
Confidence            99999999999999988764 5556666766655  467999999999999999987665432   1    122345554


Q ss_pred             EEEccCCCeEEEEEeCCCcEEEEECCc---------ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          446 IQFSRDESQRIMITSEDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                        +.++ ..+|++++.||.|++||+..         .........|...|.+++|+  +++|++||.||+|+|||
T Consensus       224 --~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         224 --IRFD-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             --EECC-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             --cccc-ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence              4445 36899999999999999531         11222234488899999984  67899999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.3e-21  Score=206.84  Aligned_cols=231  Identities=14%  Similarity=0.154  Sum_probs=162.3

Q ss_pred             CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceE
Q 005956          234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  313 (667)
Q Consensus       234 g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~  313 (667)
                      +.++++++.||.|++|++...........                                   ..........+...+.
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~  123 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIF-----------------------------------EKLDLLDSDMKKHSFW  123 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEE-----------------------------------EEECCSCTTGGGSCEE
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeec-----------------------------------cccceeeeccCCCceE
Confidence            45788999999999999875321100000                                   0000111123455677


Q ss_pred             EEEecCC-----C-eEEEEeCCCcEEEEecCCCe---------------EeEEe----eCCCcEEEEEEeeCCCCEEEEE
Q 005956          314 DLAWSNS-----N-YLLSCSMDKTVRMWQVGCNQ---------------CLNVF----DHHNYVTCVQFNPIDDNYFISG  368 (667)
Q Consensus       314 ~l~~s~~-----~-~l~s~s~Dg~I~iWd~~~~~---------------~~~~~----~h~~~V~~l~f~p~d~~~l~sg  368 (667)
                      .++|.++     + ++++++.||+|++|++....               .....    .+...+.+++|+| ++ +|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasg  201 (393)
T d1sq9a_         124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATG  201 (393)
T ss_dssp             EEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEE
T ss_pred             EEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEE
Confidence            7777654     3 78999999999999974211               11111    2556789999999 65 89999


Q ss_pred             ecCCeEEEEecCCCeEEE-------ecccCCceEEEEEeeCCCEEEEEecCCc---EEEEEecCCcceeeeE------ee
Q 005956          369 SIDGKVRIWGVCEKRVVD-------WADVRDVISAICYIPDGKGFIVGSITGT---CHFYKASGNDLKLEKV------DF  432 (667)
Q Consensus       369 s~Dg~v~iwdl~~~~~~~-------~~~~~~~v~~v~~spdg~~l~~gs~dg~---i~l~d~~~~~~~~~~~------~~  432 (667)
                      +.|++|++||+.+++.+.       ...|...|++++|+|+|++|++|+.|++   |++||+.++.......      ..
T Consensus       202 s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~  281 (393)
T d1sq9a_         202 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA  281 (393)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred             eCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccc
Confidence            999999999999987653       3457889999999999999999999874   8999998876543211      11


Q ss_pred             ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeE----EEEEcCCCCEEEEEe
Q 005956          433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM----SASFTTTGKHIISIG  502 (667)
Q Consensus       433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~----~v~~spdg~~l~sgs  502 (667)
                      ......|...|++++|+|++ ++|++++.|++|+|||+.+.........|...|.    .++|+|++..+++++
T Consensus       282 ~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         282 SLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             --CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             eeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            11123577899999999996 8999999999999999876544444334665553    477888888876554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=1.4e-22  Score=209.58  Aligned_cols=191  Identities=10%  Similarity=-0.014  Sum_probs=155.6

Q ss_pred             EEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC--eEEEEecCCCeEEEecc
Q 005956          314 DLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWAD  389 (667)
Q Consensus       314 ~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg--~v~iwdl~~~~~~~~~~  389 (667)
                      .-.||| || ++++++ ++.|++||+.++..++ +.|...|.+++|+| |+++|++++.+.  .|++||+.+++...+..
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~   83 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKFEE   83 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-ccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence            356999 88 666655 5799999999887765 47999999999999 999988877654  79999999999999999


Q ss_pred             cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe---------
Q 005956          390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS---------  460 (667)
Q Consensus       390 ~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s---------  460 (667)
                      +...+.+++|+|+|++|++++.++.+++|++.+...... ..      .+...+.+++|+|+| ++|+.+.         
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~  155 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-ER------SREAMITDFTISDNS-RFIAYGFPLKHGETDG  155 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EE------CSSSCCCCEEECTTS-CEEEEEEEECSSTTCS
T ss_pred             CCceEEeeeecccccccceeccccccccccccccceeee-ee------cccccccchhhccce-eeeeeeccccccceee
Confidence            999999999999999999999999999999987765432 11      223678899999997 5666443         


Q ss_pred             -CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          461 -EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       461 -~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                       .++.+++||........ ...+...+..++|+|||++|++++.++.+.+|+.....
T Consensus       156 ~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             CCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             ccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence             34568999987654332 23367778899999999999999999999999976554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.2e-21  Score=199.27  Aligned_cols=213  Identities=12%  Similarity=0.081  Sum_probs=156.8

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe----EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      ++..++|.+.|++|+|+|++ +|++|+.||+|+|||+.++.    +...+.|..+|.+++|+|.++.+|++|+.|+.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            55667999999999999999 99999999999999997653    34445699999999999955678999999999999


Q ss_pred             EecCCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          377 WGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       377 wdl~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      |++........  ..+........+.+++..+++++.++.+++||++............. ..........+.+.+.+ .
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~  161 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTKVKNKIFTMDTNS-S  161 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSSSCCCEEEEEECS-S
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccc-cccccceeeeeeeeccC-C
Confidence            99988765542  22334445566777889999999999999999976554433221111 11122334455666664 6


Q ss_pred             EEEEEeCCCcEEEEECCcc---eeeEEeCCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          455 RIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASF-TTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~-spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      .+++++.|+.|++||+...   ............+.+..+ ..++..+++++.||.+.+|++....
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~  227 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCc
Confidence            8999999999999997632   122222224444555554 5567899999999999999987654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=6.3e-19  Score=177.02  Aligned_cols=247  Identities=13%  Similarity=0.137  Sum_probs=186.6

Q ss_pred             ceeeccccccEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~La-tgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      .+++.. .+.+..++|+|||++|+ +++.++.|++||+.++                                       
T Consensus        25 ~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---------------------------------------   64 (301)
T d1l0qa2          25 TATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---------------------------------------   64 (301)
T ss_dssp             EEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---------------------------------------
T ss_pred             EEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---------------------------------------
Confidence            344443 34578999999999885 6667899999999863                                       


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEE-EEEec
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSI  370 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l-~sgs~  370 (667)
                            +.+..+..|. .+..+.|++++  .++++..++.+.+|+..+++....+.+...+.++.|+| ++..+ +++..
T Consensus        65 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~  136 (301)
T d1l0qa2          65 ------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNG  136 (301)
T ss_dssp             ------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETT
T ss_pred             ------ceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccccccceEEEeec-CCCeeeeeecc
Confidence                  2344555554 46889999988  55667788899999999999999999888999999999 77765 45566


Q ss_pred             CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       371 Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      ++.+.+|+..+............+..+.++|+++.+++++.+ +.+.+|+....... .....       ...+..++|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~  208 (301)
T d1l0qa2         137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-DTVKV-------EAAPSGIAVN  208 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEEC-------SSEEEEEEEC
T ss_pred             ccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeee-ecccc-------cCCcceeecc
Confidence            888999999999988877777889999999999999888766 45556665544332 22211       2457889999


Q ss_pred             cCCCeEEEEEe--CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcc
Q 005956          450 RDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       450 p~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l-~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      +++...++++.  .++.|++||+.+........ ....+..++|+|||++| ++++.|+.|+|||+++++..
T Consensus       209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccccccccccceeeeeeeeecCCCeEEEEEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            99754444433  34689999988654433332 34568999999999987 56778999999999988653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=1e-18  Score=186.56  Aligned_cols=288  Identities=11%  Similarity=0.097  Sum_probs=190.5

Q ss_pred             cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      +........+|..|. .+..++|||||++|++++.|++|++||+.++.....                            
T Consensus        48 D~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~----------------------------   98 (426)
T d1hzua2          48 DGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV----------------------------   98 (426)
T ss_dssp             ETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE----------------------------
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE----------------------------
Confidence            344445566777775 589999999999999999999999999987533211                            


Q ss_pred             eecCCCcccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEee------------CCCcEE
Q 005956          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFD------------HHNYVT  353 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~------------h~~~V~  353 (667)
                                  ..+....+|...+.+++|+||| +| +++..++++++||..++.++....            +.....
T Consensus        99 ------------~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (426)
T d1hzua2          99 ------------AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA  166 (426)
T ss_dssp             ------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred             ------------EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCcee
Confidence                        1123334678888899999999 55 566689999999999998887663            233445


Q ss_pred             EEEEeeCCCCEEEEEec-CCeEEEEecCCCe--EEEecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeee
Q 005956          354 CVQFNPIDDNYFISGSI-DGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEK  429 (667)
Q Consensus       354 ~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~  429 (667)
                      .+.+++ ++..++.... .+.+.+++.....  .+....+...+..+.|+|++++++++.. +..+.+++..+...... 
T Consensus       167 ~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~-  244 (426)
T d1hzua2         167 AIIASH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL-  244 (426)
T ss_dssp             EEEECS-SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEE-
T ss_pred             EEEECC-CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEE-
Confidence            566666 5555544433 3456566655543  2334566777899999999998888764 55688999887766533 


Q ss_pred             EeeccccCcCCCCeEEEEEccCCCeEEE--EEeCCCcEEEEECC---------cceeeEEeCCCCCCeEEEEEcCCCCEE
Q 005956          430 VDFHDRKKTSGNKITGIQFSRDESQRIM--ITSEDSKLRILDGV---------DVIHKFKGLPKSGSQMSASFTTTGKHI  498 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~--~~s~dg~I~iwd~~---------~~~~~~~~~~~~~~v~~v~~spdg~~l  498 (667)
                      .....  .  ........+...+...+.  ..+.|+.+.+|+..         +....+.+  |...+..++|+||+++|
T Consensus       245 ~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g--~~~~v~~v~~sPdg~~l  318 (426)
T d1hzua2         245 VDVGK--T--PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHL  318 (426)
T ss_dssp             EECSS--C--CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC--SSSCCCCEECCTTCSEE
T ss_pred             eccCC--c--ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEec--CCCceeEEEcCCCCceE
Confidence            11111  1  122223333332222232  33457788888754         22333444  78889999999999999


Q ss_pred             EE-------EeCCCcEEEEEcCCCCccccc----------cccCccceeEEccCCcEEEE-ecC
Q 005956          499 IS-------IGDDCRVYVWNYDELCFPSSK----------QKNSVRSCEHFFSEGVSVAV-QWP  544 (667)
Q Consensus       499 ~s-------gs~Dg~I~iWd~~~~~~~~~~----------~~~~~~~~~~fs~dg~~lav-~w~  544 (667)
                      ++       ++.|++|+|||+.+++.....          ........+.|+|||+.+.+ .|.
T Consensus       319 ~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~  382 (426)
T d1hzua2         319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN  382 (426)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC
T ss_pred             EEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEec
Confidence            94       556889999999988653221          11112334689999987755 454

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.82  E-value=1.3e-17  Score=167.32  Aligned_cols=227  Identities=11%  Similarity=0.088  Sum_probs=170.3

Q ss_pred             cceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCE-EEEEecCCeEEEEecCCCeEEE
Q 005956          310 GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY-FISGSIDGKVRIWGVCEKRVVD  386 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~-l~sgs~Dg~v~iwdl~~~~~~~  386 (667)
                      ..+..++|+|+| +| ++++.++.|++||+.+++.+..+.....+..++|++ ++.. ++++..++.+.+|+..+++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc-ccccccccccccceeeecccccceeee
Confidence            457889999999 55 577789999999999999999998777789999999 6665 4556677889999999999888


Q ss_pred             ecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 005956          387 WADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  465 (667)
Q Consensus       387 ~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I  465 (667)
                      .......+.+++++|+|+.+++. ..++.+.+|+..+...... +..       ...+..+.++|++...+++...++.+
T Consensus       111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (301)
T d1l0qa2         111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-VSV-------GRSPKGIAVTPDGTKVYVANFDSMSI  182 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EEC-------CSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             eccccccceEEEeecCCCeeeeeeccccceeeeeccccceeee-ccc-------CCCceEEEeeccccceeeeccccccc
Confidence            77788889999999999987654 4577899999987665432 111       24578899999974444444455677


Q ss_pred             EEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEe
Q 005956          466 RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ  542 (667)
Q Consensus       466 ~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~  542 (667)
                      .+|+........... ....+..++|+++++.++.++.   ++.|++||..+++.............++|+|||+.|.++
T Consensus       183 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va  261 (301)
T d1l0qa2         183 SVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA  261 (301)
T ss_dssp             EEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred             ccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEE
Confidence            788766433322222 4456788999999998876653   468999999998765544444445678999999988665


Q ss_pred             cCCC
Q 005956          543 WPGI  546 (667)
Q Consensus       543 w~~~  546 (667)
                      -..+
T Consensus       262 ~~~~  265 (301)
T d1l0qa2         262 LSFC  265 (301)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            4433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.7e-18  Score=176.34  Aligned_cols=232  Identities=9%  Similarity=0.023  Sum_probs=171.4

Q ss_pred             CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee--ccccce
Q 005956          235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH--GHKGDV  312 (667)
Q Consensus       235 ~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--gh~~~V  312 (667)
                      .||++++.|++|+|||+.+..                                             .+.++.  .+...+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~---------------------------------------------~~~~i~~~~~~~~~   36 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA---------------------------------------------VDKVITIADAGPTP   36 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE---------------------------------------------EEEEEECTTCTTCC
T ss_pred             eEEEEEcCCCEEEEEECCCCe---------------------------------------------EEEEEECCCCCCCc
Confidence            589999999999999999743                                             234443  344567


Q ss_pred             EEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeC------CCcEEEEEEeeCCCCEEEEEec------------CC
Q 005956          313 LDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDH------HNYVTCVQFNPIDDNYFISGSI------------DG  372 (667)
Q Consensus       313 ~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h------~~~V~~l~f~p~d~~~l~sgs~------------Dg  372 (667)
                      .+++|+||| ++ ++++.++.|.+||+.+++.+..+..      ...+..++|+| ++++++++..            +.
T Consensus        37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T d1pbyb_          37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred             cEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeecccccc
Confidence            899999999 55 5677899999999999999887752      23445789999 9998887763            57


Q ss_pred             eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc------------------
Q 005956          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD------------------  434 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~------------------  434 (667)
                      .+.+||..+++..........+..++|+|||+++++++.  .+.+||..+.+.... +....                  
T Consensus       116 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  192 (337)
T d1pbyb_         116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVED-KPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEE-ECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             ceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEE-eecCCccccceecCCcceeeccc
Confidence            899999999998887777788999999999999998864  467788765432211 00000                  


Q ss_pred             ------------------------------------------ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956          435 ------------------------------------------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  472 (667)
Q Consensus       435 ------------------------------------------~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~  472 (667)
                                                                ....+...+..+.++|++ .+++.+  ++.|++||+.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~  269 (337)
T d1pbyb_         193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTT
T ss_pred             cccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCC
Confidence                                                      000122334456666664 444444  57899999986


Q ss_pred             ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956          473 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  519 (667)
Q Consensus       473 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~  519 (667)
                      ........ +...+.+++|+|||++|++++.|+.|+|||..+.+...
T Consensus       270 ~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         270 NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            55444433 45678899999999999999999999999999987543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.2e-17  Score=176.61  Aligned_cols=282  Identities=8%  Similarity=-0.002  Sum_probs=196.4

Q ss_pred             cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956          208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  287 (667)
Q Consensus       208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (667)
                      +.........+..|. .+..++|||||++|++++.||+|++||+.++.....                            
T Consensus        48 D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~----------------------------   98 (432)
T d1qksa2          48 DGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV----------------------------   98 (432)
T ss_dssp             ETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE----------------------------
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE----------------------------
Confidence            334455566777774 699999999999999999999999999986432110                            


Q ss_pred             eecCCCcccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEee------------CCCcEE
Q 005956          288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFD------------HHNYVT  353 (667)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~------------h~~~V~  353 (667)
                                  ..+....+|.+.+.+..|+||| +| ++++.+++|+|||..+++++..+.            +.....
T Consensus        99 ------------~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
T d1qksa2          99 ------------AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA  166 (432)
T ss_dssp             ------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             ------------EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCcee
Confidence                        1123334677788888999999 54 688889999999999999887753            445677


Q ss_pred             EEEEeeCCCCEE-EEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCCEEEEEecC-CcEEEEEecCCcceeee
Q 005956          354 CVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEK  429 (667)
Q Consensus       354 ~l~f~p~d~~~l-~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs~d-g~i~l~d~~~~~~~~~~  429 (667)
                      .+.++| ++..+ ++...++.|.+||..+.+...  .......+..++|+|+|+++++++.+ +.+.++|..+.+.... 
T Consensus       167 ~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~-  244 (432)
T d1qksa2         167 AILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI-  244 (432)
T ss_dssp             EEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-
T ss_pred             EEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE-
Confidence            889999 66665 566677999999998866433  34556678999999999988887754 5788888876655432 


Q ss_pred             EeeccccCcCCCCeEEEEEccCCCeEEEEE-eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956          430 VDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  508 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~  508 (667)
                      +. .+....+........+...+ ....+. ..++.|.+|+......    ..+...+....++|++..+++++.++.++
T Consensus       245 ~~-~g~~~~~~~~~~~~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~~----~~~~~~v~~~~~~~~g~~~~~~s~p~~~~  318 (432)
T d1qksa2         245 ED-TGGQTPHPGRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGH----PDNAWKILDSFPALGGGSLFIKTHPNSQY  318 (432)
T ss_dssp             EE-CSSSSBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTC----TTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred             ec-cCccccccCcccceecCCCC-ceecccccCCceEEecccccccc----cccccEEEEEEEcCCCCeEEEEecCCccc
Confidence            21 22222334455555665543 333333 3478899998654321    22556788999999999999999999999


Q ss_pred             EEEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956          509 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       509 iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      +|.......     .......+++ ||++.++++..
T Consensus       319 lw~~~~~~~-----~~~~~~sv~v-pDg~~la~~s~  348 (432)
T d1qksa2         319 LYVDATLNP-----EAEISGSVAV-FDIKAMTGDGS  348 (432)
T ss_dssp             EEEECTTCS-----SHHHHTCEEE-EEGGGCCCSSS
T ss_pred             eeecccCCC-----CCCeeeEEEE-Eechhhccccc
Confidence            998765432     1112223333 77776665444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=7.7e-18  Score=172.16  Aligned_cols=236  Identities=8%  Similarity=-0.044  Sum_probs=157.4

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee-
Q 005956          228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-  306 (667)
Q Consensus       228 v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  306 (667)
                      ++|+++++||++++.|++|.|||+.++                                             +.+.++. 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~---------------------------------------------~~~~t~~~   36 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD---------------------------------------------TVYKSCVM   36 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT---------------------------------------------EEEEEEEC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC---------------------------------------------CEEEEEEc
Confidence            478999999999999999999999973                                             3345554 


Q ss_pred             ccccceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCC-------CcEEEEEEeeCCCCEEEEEe--------
Q 005956          307 GHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGS--------  369 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~-------~~V~~l~f~p~d~~~l~sgs--------  369 (667)
                      .|...+.+++|+||| ++ ++++.++.|++||+.+++.+..+...       ..+..++|+| |++++++++        
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~  115 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLND  115 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSS
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceee
Confidence            455678899999999 54 56678999999999999998877522       2356789999 888887765        


Q ss_pred             ----cCCeEEEEecCCCeEEE---ecccCCceEEEE--------------------------------------EeeCCC
Q 005956          370 ----IDGKVRIWGVCEKRVVD---WADVRDVISAIC--------------------------------------YIPDGK  404 (667)
Q Consensus       370 ----~Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~--------------------------------------~spdg~  404 (667)
                          .++.+.+||..+++...   .......+..+.                                      ++|++.
T Consensus       116 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (346)
T d1jmxb_         116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL  195 (346)
T ss_dssp             CEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred             eeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEecccc
Confidence                36678888876644221   111111122222                                      233332


Q ss_pred             EEEE--------------------------EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          405 GFIV--------------------------GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       405 ~l~~--------------------------gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      .++.                          +..++.+.+|++.+.........      .+...+..+.+++++.. ++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~  268 (346)
T d1jmxb_         196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA------DLTELYFTGLRSPKDPN-QIY  268 (346)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE------ECSSCEEEEEECSSCTT-EEE
T ss_pred             EEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEee------cccceeEEEEEeCCCCE-EEE
Confidence            2211                          11122344445444433222111      12356788888888744 444


Q ss_pred             EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956          459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  518 (667)
Q Consensus       459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~  518 (667)
                      .. ++.|.+||........... +...+.+++|+|||++|++++.|+.|+|||..+++..
T Consensus       269 ~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         269 GV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             ec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            43 4579999987654333322 4456889999999999999999999999999988754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=1.2e-16  Score=170.66  Aligned_cols=259  Identities=14%  Similarity=0.005  Sum_probs=180.1

Q ss_pred             CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceE
Q 005956          234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  313 (667)
Q Consensus       234 g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~  313 (667)
                      .-++++.+.||+|.|||..++                                             +.+..+..|. .+.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~---------------------------------------------~v~~~~~~g~-~~~   65 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTY---------------------------------------------EIKTVLDTGY-AVH   65 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTC---------------------------------------------CEEEEEECSS-CEE
T ss_pred             cEEEEEEcCCCEEEEEECCCC---------------------------------------------cEEEEEeCCC-Cee
Confidence            335688999999999999873                                             4466666663 599


Q ss_pred             EEEecCCC-eEEEEeCCCcEEEEecCCCeEe--EEee----CCCcEEEEEEeeCCCCEE-EEEecCCeEEEEecCCCeEE
Q 005956          314 DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL--NVFD----HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVV  385 (667)
Q Consensus       314 ~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~--~~~~----h~~~V~~l~f~p~d~~~l-~sgs~Dg~v~iwdl~~~~~~  385 (667)
                      .++|+||| +|++++.|++|++||+.+++..  ..+.    |...+.+..|+| |+++| ++++.+++|++||..+++++
T Consensus        66 ~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~  144 (432)
T d1qksa2          66 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPK  144 (432)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCccccce
Confidence            99999999 8999999999999999887643  3333    444556666778 88875 67888999999999998876


Q ss_pred             Eec------------ccCCceEEEEEeeCCCEEEE-EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          386 DWA------------DVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       386 ~~~------------~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      ...            .......++.++|+|..+++ ...++.+.+||..+.+.... ..+.     ....+..+.|+|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~-~~i~-----~g~~~~~~~~spdg  218 (432)
T d1qksa2         145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TEIS-----AERFLHDGGLDGSH  218 (432)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EEEE-----CCSSEEEEEECTTS
T ss_pred             eeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceE-EEEc-----ccCccccceECCCC
Confidence            432            23445678899999987655 55678999999887654322 1111     13568899999998


Q ss_pred             CeEEEEEeCCCcEEEEECCcceeeEEe-----CCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccccccCc
Q 005956          453 SQRIMITSEDSKLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKNSV  526 (667)
Q Consensus       453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~~~~  526 (667)
                      ..+++++..++.+.++|..........     ..+........+...+...++.. .++.|.+|+.......  .+ ...
T Consensus       219 ~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~--~~-~~~  295 (432)
T d1qksa2         219 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP--DN-AWK  295 (432)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT--TT-BTS
T ss_pred             CEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccc--cc-ccE
Confidence            545555556678999998754332221     12344455566666666665554 3789999987665322  11 122


Q ss_pred             cceeEEccCCcEEEEecCCCCc
Q 005956          527 RSCEHFFSEGVSVAVQWPGIGT  548 (667)
Q Consensus       527 ~~~~~fs~dg~~lav~w~~~~~  548 (667)
                      .....|++++..++++..+...
T Consensus       296 v~~~~~~~~g~~~~~~s~p~~~  317 (432)
T d1qksa2         296 ILDSFPALGGGSLFIKTHPNSQ  317 (432)
T ss_dssp             EEEEEECSCSCCCCEECCTTCS
T ss_pred             EEEEEEcCCCCeEEEEecCCcc
Confidence            3345788888888887776654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=2.5e-16  Score=167.70  Aligned_cols=263  Identities=13%  Similarity=0.031  Sum_probs=167.9

Q ss_pred             EcCCCC--EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeec
Q 005956          230 FSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG  307 (667)
Q Consensus       230 fspdg~--~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  307 (667)
                      ++.|.+  ++++++.||+|+|||+.++                                             +.+.++..
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~---------------------------------------------~~~~~l~~   60 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSK---------------------------------------------KIVKVIDT   60 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTC---------------------------------------------SEEEEEEC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCC---------------------------------------------cEEEEEeC
Confidence            444433  6688889999999999873                                             44677777


Q ss_pred             cccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe--e----CCCcEEEEEEeeCCCCEEE-EEecCCeEEEEec
Q 005956          308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--D----HHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWGV  379 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~--~----h~~~V~~l~f~p~d~~~l~-sgs~Dg~v~iwdl  379 (667)
                      |. .+..++|+||| +|++++.|++|++||+.+++.....  .    |...+.+++|+| |+++++ ++..++.+++||.
T Consensus        61 g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~  138 (426)
T d1hzua2          61 GY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDG  138 (426)
T ss_dssp             CS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEET
T ss_pred             CC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcC
Confidence            64 58999999999 8999999999999999988755433  2    455566777788 888765 4558899999999


Q ss_pred             CCCeEEEec-cc-----------CCceEEEEEeeCCCEEEEEecC-CcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956          380 CEKRVVDWA-DV-----------RDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  446 (667)
Q Consensus       380 ~~~~~~~~~-~~-----------~~~v~~v~~spdg~~l~~gs~d-g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l  446 (667)
                      .++.+.... .+           ......+.+++++..++....+ +.+.+++...........      ..+...+..+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~  212 (426)
T d1hzua2         139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS------IGAAPFLADG  212 (426)
T ss_dssp             TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE------EECCSSEEEE
T ss_pred             CccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE------eccCCccEee
Confidence            998866432 22           2334556666666666554433 445555544333221111      1224678899


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECCcceee--EEeCCCCCCeEEEEEcCCCC-EE--EEEeCCCcEEEEEcCCCCcc---
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLPKSGSQMSASFTTTGK-HI--ISIGDDCRVYVWNYDELCFP---  518 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~~~~~~~v~~v~~spdg~-~l--~sgs~Dg~I~iWd~~~~~~~---  518 (667)
                      .|+|++..++++...+..+.+++.......  ..............+...+. .+  ++.+.|+.+.+|+.......   
T Consensus       213 ~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~  292 (426)
T d1hzua2         213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  292 (426)
T ss_dssp             EECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB
T ss_pred             eECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccccc
Confidence            999998555556667778999998754332  22211222222333322222 22  23345778888887654321   


Q ss_pred             ----cc-ccccCccceeEEccCCcEEEEecCC
Q 005956          519 ----SS-KQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       519 ----~~-~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                          .. .........++|+|||..|++....
T Consensus       293 ~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~  324 (426)
T d1hzua2         293 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF  324 (426)
T ss_dssp             TSEEEEEECSSSCCCCEECCTTCSEEEECCTT
T ss_pred             ceEeEEEecCCCceeEEEcCCCCceEEEeecC
Confidence                11 1223345567999999999986543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3e-15  Score=152.06  Aligned_cols=251  Identities=11%  Similarity=0.162  Sum_probs=172.5

Q ss_pred             cccccEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs-~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      .|.+.|..|+|||||++|++++ .|+.|++|++.......                                        
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~----------------------------------------   73 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------------------------------------   73 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------------------------------
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE----------------------------------------
Confidence            5889999999999999996655 58999999997521100                                        


Q ss_pred             CCcceeeeccccceEEEEecCCC-eEEEEeC-CCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEec-CC
Q 005956          299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSI-DG  372 (667)
Q Consensus       299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~-Dg  372 (667)
                        .......+...+..++|+|+| +|++++. +++|.+|+..........   .+...+.++.|+| ++++++.++. +.
T Consensus        74 --~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~  150 (333)
T d1ri6a_          74 --TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQD  150 (333)
T ss_dssp             --EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGT
T ss_pred             --EEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccc
Confidence              011112344567789999999 7777764 778999998877654443   3677888999999 8888877774 45


Q ss_pred             eEEEEecCCCeEE-------EecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceee---eEeeccccCcCCC
Q 005956          373 KVRIWGVCEKRVV-------DWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE---KVDFHDRKKTSGN  441 (667)
Q Consensus       373 ~v~iwdl~~~~~~-------~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~---~~~~~~~~~~~~~  441 (667)
                      .|.+|+.......       ........+..++|++++..++... ..+...+++.........   .+...........
T Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  230 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence            7999998764322       1223445678899999998887655 556778888765443332   1111111222345


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFK-GLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYD  513 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~  513 (667)
                      ....+++++++...++++..++.+.+|+...  ...... .......+.+++|+|||++|++++. ++.|.||+++
T Consensus       231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             cceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            6778899999866666777788999998652  222222 2224456788999999999887764 5889999664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=5.9e-15  Score=149.89  Aligned_cols=240  Identities=13%  Similarity=0.115  Sum_probs=164.6

Q ss_pred             eccccceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeE----EeeCCCcEEEEEEeeCCCCEEEEEec-CCeEEEEe
Q 005956          306 HGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLN----VFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWG  378 (667)
Q Consensus       306 ~gh~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~----~~~h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwd  378 (667)
                      ..|.+.|..|+|+||| +|+ ++..|+.|++|++.......    ...+...+..++|+| ++++|++++. ++.|.+|+
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeec
Confidence            3678889999999999 665 45568999999997654322    223556778899999 9999988875 67899998


Q ss_pred             cCCCeEE---EecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          379 VCEKRVV---DWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       379 l~~~~~~---~~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      .......   ....+...+.++.++|+++++++++. +..+.+|+.............. ...........++|++++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE-VTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-EECSTTCCEEEEEECTTSSE
T ss_pred             cccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee-eeeecCCCccEEEEecccee
Confidence            8776543   34456677889999999999888774 4578999987665443321111 12223456788999999755


Q ss_pred             EEEEEeCCCcEEEEECCcce------eeEEe----CCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccc--
Q 005956          455 RIMITSEDSKLRILDGVDVI------HKFKG----LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSK--  521 (667)
Q Consensus       455 ~l~~~s~dg~I~iwd~~~~~------~~~~~----~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~--  521 (667)
                      .+.+....+...+|+.....      .....    .........+++++++++++.+. .++.+.+|++.........  
T Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (333)
T d1ri6a_         191 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  270 (333)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEE
Confidence            55566677788888754211      11111    12345567789999999877654 5678999998765433221  


Q ss_pred             --cccCccceeEEccCCcEEEEecCCCC
Q 005956          522 --QKNSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       522 --~~~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                        ........++|+|||++|+++.....
T Consensus       271 ~~~~~~~p~~~a~spDGk~l~va~~~~~  298 (333)
T d1ri6a_         271 FQPTETQPRGFNVDHSGKYLIAAGQKSH  298 (333)
T ss_dssp             EEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred             EeCCCCCeeEEEEeCCCCEEEEEECCCC
Confidence              11223345799999999988754443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.63  E-value=1.9e-13  Score=141.46  Aligned_cols=274  Identities=11%  Similarity=-0.077  Sum_probs=180.2

Q ss_pred             ccccccEEEEEEcCCCCEEEEEE-----CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956          219 QAHKGCIWTLKFSPDGRYLASGG-----EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  293 (667)
Q Consensus       219 ~~H~~~I~~v~fspdg~~Latgs-----~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (667)
                      .+|.+++.+++++|||+.++...     .++.|.+||..++                                       
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---------------------------------------   57 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---------------------------------------   57 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC---------------------------------------
Confidence            46899999999999999887652     3456888888763                                       


Q ss_pred             cccccCCcceeeeccccceEEEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEee-CCCc-------EEE
Q 005956          294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFD-HHNY-------VTC  354 (667)
Q Consensus       294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~-h~~~-------V~~  354 (667)
                            +.+.++..+...  .++|+||| +|++++          .++.|.+||..+++.+..+. +...       ...
T Consensus        58 ------~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~  129 (373)
T d2madh_          58 ------SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWM  129 (373)
T ss_pred             ------CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCc
Confidence                  334555555433  68999999 777654          46789999999999888775 2222       245


Q ss_pred             EEEeeCCCCEEEEEe--cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEe
Q 005956          355 VQFNPIDDNYFISGS--IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVD  431 (667)
Q Consensus       355 l~f~p~d~~~l~sgs--~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~  431 (667)
                      +.|++ +++.++...  .++.+.+|+....+.....   ..+.++.++|+|+.+ ++.+.||.+.+|+............
T Consensus       130 ~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~  205 (373)
T d2madh_         130 NANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG  205 (373)
T ss_pred             EEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence            78888 777665554  3567889998877665432   346678899998765 5788899999999987665443211


Q ss_pred             eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceee----EEeC--------CCCCCeEEEEEcCCCCEEE
Q 005956          432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK----FKGL--------PKSGSQMSASFTTTGKHII  499 (667)
Q Consensus       432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~----~~~~--------~~~~~v~~v~~spdg~~l~  499 (667)
                      .. ...........+.+.++  ..++..+.++.+.+|+.......    ....        ........+++++++..++
T Consensus       206 ~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  282 (373)
T d2madh_         206 AM-LTAAQNLLTQPAQANKS--GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             ec-cccCccceeeeEEECCC--ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEE
Confidence            11 11111222344556665  36677778889999986632211    1110        0112233456666665544


Q ss_pred             ----------EEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEE-ecCCC
Q 005956          500 ----------SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV-QWPGI  546 (667)
Q Consensus       500 ----------sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav-~w~~~  546 (667)
                                +...++.|.+||..+++.............+.|+|||+.+.+ ....+
T Consensus       283 ~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d  340 (373)
T d2madh_         283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             EecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCC
Confidence                      455667899999999887655555555667899999986543 33333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=3.1e-14  Score=144.21  Aligned_cols=210  Identities=10%  Similarity=0.031  Sum_probs=153.5

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEE-EEEecCCeEEEEecCCCeEEEeccc------C
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWADV------R  391 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l-~sgs~Dg~v~iwdl~~~~~~~~~~~------~  391 (667)
                      +|++++.|++|+|||+.+++++..+.   +...+.+++|+| |++++ ++++.++.|.+||+.+++.+.....      .
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            78999999999999999999999885   345688999999 99887 4667899999999999987753322      2


Q ss_pred             CceEEEEEeeCCCEEEEEec------------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956          392 DVISAICYIPDGKGFIVGSI------------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  459 (667)
Q Consensus       392 ~~v~~v~~spdg~~l~~gs~------------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~  459 (667)
                      ..+..++|+|++++++++..            ++.+.+||..+...... +..       ...+..++|+|+| .+++++
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~-------~~~~~~~~~s~dg-~~l~~~  152 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA-FEA-------PRQITMLAWARDG-SKLYGL  152 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE-EEC-------CSSCCCEEECTTS-SCEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe-ccc-------cCCceEEEEcCCC-CEEEEE
Confidence            33567899999999988764            46778888887654332 111       2457789999997 667766


Q ss_pred             eCCCcEEEEECCcceeeE--------------------------------------------------------------
Q 005956          460 SEDSKLRILDGVDVIHKF--------------------------------------------------------------  477 (667)
Q Consensus       460 s~dg~I~iwd~~~~~~~~--------------------------------------------------------------  477 (667)
                      +.  .+.+||........                                                              
T Consensus       153 ~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (337)
T d1pbyb_         153 GR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             SS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             cC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence            54  36667643211000                                                              


Q ss_pred             ----EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCC
Q 005956          478 ----KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       478 ----~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~  545 (667)
                          ....+...+..+.++|++.+++++  ++.|++||+.+++............+++|+|||..|+++...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBS
T ss_pred             EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC
Confidence                011133445667788888888766  588999999999876665555566788999999999987543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.60  E-value=1.2e-12  Score=135.23  Aligned_cols=270  Identities=6%  Similarity=-0.090  Sum_probs=162.4

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCcc-ccCCCCeEEecccCC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKS  283 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  283 (667)
                      .+++..|..+  .++|+|||++|++++          .++.|.|||..++........+..... .......+.+.. ..
T Consensus        60 ~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg  136 (373)
T d2madh_          60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NN  136 (373)
T ss_pred             EEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe-CC
Confidence            3445555543  799999999999875          467899999998776544333332211 111111111111 11


Q ss_pred             CCceee--cCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-------CCCcE
Q 005956          284 SHVPVV--IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYV  352 (667)
Q Consensus       284 ~~~~~~--~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-------h~~~V  352 (667)
                      ....+.  .+.....+-.........|.....++.+++++  .+++.+.|+++.+|+...+.......       .....
T Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (373)
T d2madh_         137 ADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLT  216 (373)
T ss_pred             CcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCcccee
Confidence            111111  11111111111112233455567788999988  66789999999999999888776653       11223


Q ss_pred             EEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee
Q 005956          353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  429 (667)
Q Consensus       353 ~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~  429 (667)
                      ..+.+.+  +..++..+.++.+.+|+........   ............+.|.+...+..+.++...+            
T Consensus       217 ~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------  282 (373)
T d2madh_         217 QPAQANK--SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY------------  282 (373)
T ss_pred             eeEEECC--CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEE------------
Confidence            3444544  4455666788999999998876543   2223333444555555444444444432211            


Q ss_pred             EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCE--EEEEeCCCcE
Q 005956          430 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKH--IISIGDDCRV  507 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~--l~sgs~Dg~I  507 (667)
                                       .+..+ ...++....++.|.+||.......... .+...+..++|+|||+.  +++++.|+.|
T Consensus       283 -----------------~~~~~-~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v  343 (373)
T d2madh_         283 -----------------LLTSE-QSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             -----------------EecCC-CceEEeecCCCeEEEEECCCCcEEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeE
Confidence                             11222 256777888889999998765443333 25677899999999984  4678899999


Q ss_pred             EEEEcCCCCcccc
Q 005956          508 YVWNYDELCFPSS  520 (667)
Q Consensus       508 ~iWd~~~~~~~~~  520 (667)
                      +|||+.+++....
T Consensus       344 ~v~D~~tg~~~~~  356 (373)
T d2madh_         344 HIYDAGAGDQDQS  356 (373)
T ss_pred             EEEECCCCCEEEE
Confidence            9999999986544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.56  E-value=9.9e-14  Score=140.94  Aligned_cols=222  Identities=9%  Similarity=0.001  Sum_probs=148.9

Q ss_pred             EEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEE-EEEecCCeEEEEecCCCeEEEeccc
Q 005956          315 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWADV  390 (667)
Q Consensus       315 l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l-~sgs~Dg~v~iwdl~~~~~~~~~~~  390 (667)
                      ++|++++ +|++++.|++|.+||+.+++++..+.  +...+.+++|+| |++++ +++..++.|++||+.+++.+.....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            4688988 99999999999999999999999875  566788999999 88876 4556789999999999987753322


Q ss_pred             -------CCceEEEEEeeCCCEEEEEec------------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          391 -------RDVISAICYIPDGKGFIVGSI------------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       391 -------~~~v~~v~~spdg~~l~~gs~------------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                             ...+..++|+|||++++++..            ++.+.+|+..++...........     ...+..+.++++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  155 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----PRQVYLMRAADD  155 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----CSSCCCEEECTT
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec-----cCceEEEEecCC
Confidence                   123667899999999988753            56788888876544322100000     011222222222


Q ss_pred             CCeEEE----------------------------------------------------------------EEeCCCcEEE
Q 005956          452 ESQRIM----------------------------------------------------------------ITSEDSKLRI  467 (667)
Q Consensus       452 g~~~l~----------------------------------------------------------------~~s~dg~I~i  467 (667)
                      + ..++                                                                ++..+..+.+
T Consensus       156 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
T d1jmxb_         156 G-SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  234 (346)
T ss_dssp             S-CEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             C-EEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence            2 1111                                                                1112223444


Q ss_pred             EECCccee-eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956          468 LDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       468 wd~~~~~~-~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ||...... ......+...+..+.+++++.+++.+.. +.|++||..+++.............++|+|||..|+++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred             EECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeC
Confidence            44432211 1111225667788889999988887764 6799999999876555444445667899999999998754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=2.2e-13  Score=139.54  Aligned_cols=262  Identities=13%  Similarity=0.058  Sum_probs=158.4

Q ss_pred             eeeccccccEEEEEEcCCCCEEEEE----------ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956          216 QEIQAHKGCIWTLKFSPDGRYLASG----------GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (667)
Q Consensus       216 ~~l~~H~~~I~~v~fspdg~~Latg----------s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (667)
                      .++..+.  +..++|||||++|+++          ..|+.|++||..++........+..                    
T Consensus        42 ~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~--------------------   99 (355)
T d2bbkh_          42 GMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA--------------------   99 (355)
T ss_dssp             EEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC--------------------
T ss_pred             EEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc--------------------
Confidence            3444444  3479999999988765          3478999999987544322111100                    


Q ss_pred             ceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEE--eCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCC
Q 005956          286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSC--SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD  362 (667)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~--s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~  362 (667)
                                     ..   .........++|++++ +++.+  +.+..+.+|+..+++.+..+...........   ..
T Consensus       100 ---------------~~---~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  158 (355)
T d2bbkh_         100 ---------------PR---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT---AP  158 (355)
T ss_dssp             ---------------CC---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE---ET
T ss_pred             ---------------ce---eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec---CC
Confidence                           00   0111233457899999 55554  4567899999999999888764433222111   23


Q ss_pred             CEEEEEecCCeEEEEecCCCeEE---E----ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeecc
Q 005956          363 NYFISGSIDGKVRIWGVCEKRVV---D----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHD  434 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~~~---~----~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~  434 (667)
                      ..++..+.|++..++........   .    ...+...+....+.+++..++.++.++.+++|++..+..... ....+.
T Consensus       159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  238 (355)
T d2bbkh_         159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  238 (355)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence            34444455555555544332211   1    112333455667888889999999999999999988765432 111110


Q ss_pred             c----cCcCCCCeEEEEEccCCCeEEEEEeCC---------CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC--EEE
Q 005956          435 R----KKTSGNKITGIQFSRDESQRIMITSED---------SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HII  499 (667)
Q Consensus       435 ~----~~~~~~~I~~l~~sp~g~~~l~~~s~d---------g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~  499 (667)
                      .    ..........+++++++...++.....         ..|.+||..+........ +...+.+++|+|||+  +++
T Consensus       239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEE
T ss_pred             cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEE
Confidence            0    000112334588999974433333222         379999987543322221 345578999999998  456


Q ss_pred             EEeCCCcEEEEEcCCCCccccc
Q 005956          500 SIGDDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       500 sgs~Dg~I~iWd~~~~~~~~~~  521 (667)
                      +++.|+.|+|||.++++.....
T Consensus       318 ~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         318 LSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             EETTTTEEEEEETTTCCEEEEE
T ss_pred             EECCCCEEEEEECCCCCEEEEE
Confidence            7778999999999999865443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=2.4e-12  Score=131.68  Aligned_cols=259  Identities=12%  Similarity=0.028  Sum_probs=162.4

Q ss_pred             EEEEcCCCCEEEEEE-----CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956          227 TLKFSPDGRYLASGG-----EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  301 (667)
Q Consensus       227 ~v~fspdg~~Latgs-----~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (667)
                      -.+.+|||+.++...     .+..|.|||..++.                                             .
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~---------------------------------------------~   40 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---------------------------------------------V   40 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE---------------------------------------------E
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCc---------------------------------------------E
Confidence            345689999887764     35679999998642                                             2


Q ss_pred             ceeeeccccceEEEEecCCC-eEEEE----------eCCCcEEEEecCCCeEeEEee-C-------CCcEEEEEEeeCCC
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSC----------SMDKTVRMWQVGCNQCLNVFD-H-------HNYVTCVQFNPIDD  362 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~----------s~Dg~I~iWd~~~~~~~~~~~-h-------~~~V~~l~f~p~d~  362 (667)
                      +.++..+.  +..++|+||| +|+..          ..|+.|++||+.+++.+..+. +       ......++|+| ++
T Consensus        41 ~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg  117 (355)
T d2bbkh_          41 IGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DG  117 (355)
T ss_dssp             EEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TS
T ss_pred             EEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-CC
Confidence            34444433  3368999999 56543          457899999999999888764 1       12335689999 88


Q ss_pred             CEEEEEe--cCCeEEEEecCCCeEEEecccCCc--------eEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEe
Q 005956          363 NYFISGS--IDGKVRIWGVCEKRVVDWADVRDV--------ISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVD  431 (667)
Q Consensus       363 ~~l~sgs--~Dg~v~iwdl~~~~~~~~~~~~~~--------v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~  431 (667)
                      ++++.++  .+..+.+|+..+++.+........        ...+.+++||+.+++.. .++.+.+++.....       
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-------  190 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-------  190 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-------
T ss_pred             CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-------
Confidence            8887765  457899999999987764433222        22344455554444332 22233333332221       


Q ss_pred             eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceee----EEeCC--------CCCCeEEEEEcCCCCEEE
Q 005956          432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK----FKGLP--------KSGSQMSASFTTTGKHII  499 (667)
Q Consensus       432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~----~~~~~--------~~~~v~~v~~spdg~~l~  499 (667)
                           ..+...+....+.+++ ..++.++.++.+++|+.......    .....        .......+++++++..++
T Consensus       191 -----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~  264 (355)
T d2bbkh_         191 -----PEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  264 (355)
T ss_dssp             -----CTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             -----ceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEE
Confidence                 1122344555677764 67888899999999997632211    11100        011223578899999988


Q ss_pred             EEeCC----------CcEEEEEcCCCCccccccccCccceeEEccCCcE-EEEecCCC
Q 005956          500 SIGDD----------CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS-VAVQWPGI  546 (667)
Q Consensus       500 sgs~D----------g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~-lav~w~~~  546 (667)
                      ....+          ..|.+||..+++.............+.|+|||+. +.++...+
T Consensus       265 ~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         265 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             EEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC
Confidence            76544          3699999999876544433344567899999984 44443333

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=1.1e-11  Score=132.63  Aligned_cols=148  Identities=12%  Similarity=0.117  Sum_probs=111.3

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956          227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  306 (667)
Q Consensus       227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (667)
                      .+.|.+|++++..  .|+.|.+||+.++....+.                                        .-..+.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~----------------------------------------~~~~~~   58 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFL----------------------------------------ENSTFD   58 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEE----------------------------------------CTTTTT
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEE----------------------------------------chhhhh
Confidence            4779999998874  5788999999975432110                                        012345


Q ss_pred             ccccceEEEEecCCC-eEEEEeC---------CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          307 GHKGDVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       307 gh~~~V~~l~~s~~~-~l~s~s~---------Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      .|...|.++.||||+ +|+.++.         ++.+.|||+.+++......+...+..+.|+| |++.|+.. .++.+++
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~  136 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYV  136 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEE
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc-CcceeeEe-ecccceE
Confidence            677889999999999 7776643         5678999999998777667889999999999 99999985 5778999


Q ss_pred             EecCCCeEEEecc-------------------cCCceEEEEEeeCCCEEEEEecCCc-EEEE
Q 005956          377 WGVCEKRVVDWAD-------------------VRDVISAICYIPDGKGFIVGSITGT-CHFY  418 (667)
Q Consensus       377 wdl~~~~~~~~~~-------------------~~~~v~~v~~spdg~~l~~gs~dg~-i~l~  418 (667)
                      |++.+++......                   ..+....+.|+|||+.|+....|.. +..|
T Consensus       137 ~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             EECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence            9999887665332                   1233566889999999999876533 4433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=2.4e-11  Score=125.62  Aligned_cols=261  Identities=8%  Similarity=-0.064  Sum_probs=156.5

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  284 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (667)
                      .+.+..|...  .++|+|||++|++++          .|+.|++||..++......-.+..                   
T Consensus        59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~-------------------  117 (368)
T d1mdah_          59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-------------------  117 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-------------------
T ss_pred             EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc-------------------
Confidence            3444455544  589999999998865          377899999987543221110000                   


Q ss_pred             CceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCC
Q 005956          285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD  362 (667)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~  362 (667)
                                     ..    .........++|+||| +|+.+. .++.|.+||+.+++.+..+......   .+.|...
T Consensus       118 ---------------~~----~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~  175 (368)
T d1mdah_         118 ---------------PR----FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---HIHPGAA  175 (368)
T ss_dssp             ---------------CS----CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---CCEEEET
T ss_pred             ---------------ce----ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---eEccCCC
Confidence                           00    0011123358999999 666654 6799999999999998887633221   1222245


Q ss_pred             CEEEEEecCCeEEEEecCCCeEEE-------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeecc
Q 005956          363 NYFISGSIDGKVRIWGVCEKRVVD-------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHD  434 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~~~~-------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~  434 (667)
                      ..++..+.||++.++++.......       ...+...+..+.+.+++..+.  ...+.+.+++......... ......
T Consensus       176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (368)
T d1mdah_         176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW--AVASSILQGDIPAAGATMKAAIDGNE  253 (368)
T ss_dssp             TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE--CBSSCCEEEECCSSCCEEECCCCSSC
T ss_pred             ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE--ecCCCEEEEeecCCceEEEeeccccc
Confidence            677788889999999876644321       122333445566667765444  4456777777765544322 111100


Q ss_pred             c----cCcCCCCeEEEEEccCCCeEEEEEeCC--------CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-E-EEE
Q 005956          435 R----KKTSGNKITGIQFSRDESQRIMITSED--------SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-H-IIS  500 (667)
Q Consensus       435 ~----~~~~~~~I~~l~~sp~g~~~l~~~s~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~-l~s  500 (667)
                      .    ..........+++++++...++....+        ..|++||.......... .....+.+++|+|||+ + +++
T Consensus       254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-EEEEEECEEEECCSSSCEEEEE
T ss_pred             ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe-cCCCceeEEEECCCCCEEEEEE
Confidence            0    000012234578888875544443322        35889998754322221 1345678899999997 3 456


Q ss_pred             EeCCCcEEEEEcCCCCccccc
Q 005956          501 IGDDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       501 gs~Dg~I~iWd~~~~~~~~~~  521 (667)
                      +..|+.|+|||..+++.....
T Consensus       333 ~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         333 SAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             ETTTTEEEEEESSSCEEEEEC
T ss_pred             eCCCCeEEEEECCCCCEEEEE
Confidence            677899999999998765443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.28  E-value=1.2e-10  Score=124.60  Aligned_cols=282  Identities=9%  Similarity=0.044  Sum_probs=159.1

Q ss_pred             ceeeccccccEEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956          215 SQEIQAHKGCIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  285 (667)
Q Consensus       215 ~~~l~~H~~~I~~v~fspdg~~Latgs~---------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (667)
                      .+.+..|...|.++.|||||++||.++.         ++.+.|||+.++                               
T Consensus        54 ~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-------------------------------  102 (470)
T d2bgra1          54 NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-------------------------------  102 (470)
T ss_dssp             TTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-------------------------------
T ss_pred             hhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-------------------------------
Confidence            4466788899999999999999998864         467788888763                               


Q ss_pred             ceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-----------------
Q 005956          286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----------------  347 (667)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-----------------  347 (667)
                                     .+..+..|...+..+.||||| .++. ..++.+.+|+..+++..+...                 
T Consensus       103 ---------------~~~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~  166 (470)
T d2bgra1         103 ---------------QLITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (470)
T ss_dssp             ---------------EECCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             ---------------cccccccCCccccccccccCcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeee
Confidence                           234566788889999999999 6666 457789999999887665442                 


Q ss_pred             --CCCcEEEEEEeeCCCCEEEEEecCCe-EEEEe-----------------------------------cCCCeEEEe--
Q 005956          348 --HHNYVTCVQFNPIDDNYFISGSIDGK-VRIWG-----------------------------------VCEKRVVDW--  387 (667)
Q Consensus       348 --h~~~V~~l~f~p~d~~~l~sgs~Dg~-v~iwd-----------------------------------l~~~~~~~~--  387 (667)
                        .......+.|+| |+++|+....|.+ +..|+                                   +..+.....  
T Consensus       167 ~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~  245 (470)
T d2bgra1         167 EEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT  245 (470)
T ss_dssp             HHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCC
T ss_pred             eeecCCccccEECC-CCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeecc
Confidence              112345678999 9999998876533 33332                                   222111100  


Q ss_pred             ----------cccCCceEEEEEeeCCCEEEEEec-CC---cEEEEEecCCcceeeeE------eeccc--cCcCCCCeEE
Q 005956          388 ----------ADVRDVISAICYIPDGKGFIVGSI-TG---TCHFYKASGNDLKLEKV------DFHDR--KKTSGNKITG  445 (667)
Q Consensus       388 ----------~~~~~~v~~v~~spdg~~l~~gs~-dg---~i~l~d~~~~~~~~~~~------~~~~~--~~~~~~~I~~  445 (667)
                                ......+..+.|.+++..++.... .+   .+.++++.........+      .....  ...+..  ..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~--~~  323 (470)
T d2bgra1         246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP--SE  323 (470)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC--CC
T ss_pred             ccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccC--CC
Confidence                      011123567888888876655332 22   34455544322221111      00000  000111  22


Q ss_pred             EEEccCCCe-EEEEEeCCCcEEEE--ECCcceeeEEeCCCCCCeEEEEEcCCCCEE-EEEeCCC------cEEEEEcCCC
Q 005956          446 IQFSRDESQ-RIMITSEDSKLRIL--DGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDC------RVYVWNYDEL  515 (667)
Q Consensus       446 l~~sp~g~~-~l~~~s~dg~I~iw--d~~~~~~~~~~~~~~~~v~~v~~spdg~~l-~sgs~Dg------~I~iWd~~~~  515 (667)
                      ..+.+++.. +++.+..+|..+||  +........... +...|..+ ++++++.| +++..++      .|+--++.++
T Consensus       324 ~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~-g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~  401 (470)
T d2bgra1         324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDY  401 (470)
T ss_dssp             CEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCC-SSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCT
T ss_pred             ceeeecCCCcEEEEeccCcCceeEEEeccCCceeeecc-CCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCC
Confidence            344454434 45566677765555  554333222222 34445555 44455554 3443322      2443445544


Q ss_pred             Cccccc-----cccCccceeEEccCCcEEEEecCCCCc
Q 005956          516 CFPSSK-----QKNSVRSCEHFFSEGVSVAVQWPGIGT  548 (667)
Q Consensus       516 ~~~~~~-----~~~~~~~~~~fs~dg~~lav~w~~~~~  548 (667)
                      ......     ........+.|||||++++..+++...
T Consensus       402 ~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~  439 (470)
T d2bgra1         402 TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGL  439 (470)
T ss_dssp             TCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSS
T ss_pred             CceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCC
Confidence            322111     122233457899999999987776543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.27  E-value=4.4e-11  Score=124.86  Aligned_cols=284  Identities=12%  Similarity=0.068  Sum_probs=174.6

Q ss_pred             EEEEECCCcEEEEEcCCCceeee--eeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceEE
Q 005956          237 LASGGEDGVVRIWHVTSVAASCK--SFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  314 (667)
Q Consensus       237 Latgs~Dg~I~vWdv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~  314 (667)
                      ++||+.+|.|+||++.++.....  .|++++............+...                 ......-..|......
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~-----------------~~~~~~gd~hhP~~s~   76 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGG-----------------DQQYLNGDCHHPHISM   76 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCS-----------------SSCCSCCCBCCCEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEec-----------------ccccccCcccCCCcce
Confidence            67888999999999988755432  2344432222111110000000                 0011112234455566


Q ss_pred             EEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCC--EEEEEecCC----------------
Q 005956          315 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDN--YFISGSIDG----------------  372 (667)
Q Consensus       315 l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~--~l~sgs~Dg----------------  372 (667)
                      ..++||| +| ++...+..|.++|+.++++...+.  +...+..++|+| +++  |++..+.+.                
T Consensus        77 t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~  155 (441)
T d1qnia2          77 TDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSY  155 (441)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEE
T ss_pred             ecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCccccccccccc
Confidence            6678899 55 455678899999999999888664  677899999999 777  444444332                


Q ss_pred             -eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC---------------cEEEEE-----------------
Q 005956          373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYK-----------------  419 (667)
Q Consensus       373 -~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg---------------~i~l~d-----------------  419 (667)
                       .+..+|..+.++.........+..+.++|+|+++++.+.+.               .|.+.+                 
T Consensus       156 ~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~  235 (441)
T d1qnia2         156 TMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG  235 (441)
T ss_dssp             EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             ceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence             23557888877766555566788899999999999887542               112222                 


Q ss_pred             ---------ecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceee----------EEeC
Q 005956          420 ---------ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK----------FKGL  480 (667)
Q Consensus       420 ---------~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~----------~~~~  480 (667)
                               ....... ..+.       .+.....+.++|||...++++..+++|.|||+.+....          +...
T Consensus       236 ~~~v~vvd~~~~~~v~-~~IP-------vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~  307 (441)
T d1qnia2         236 DSKVPVVDGRGESEFT-RYIP-------VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE  307 (441)
T ss_dssp             TCCCCEEECSSSCSSE-EEEC-------CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred             CCCcEEEEcccCCceE-EEEe-------CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence                     1111111 0111       11334679999998666677788999999997643321          1111


Q ss_pred             C-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------Cccc-c------ccccCccceeEEccCCcEEEEec
Q 005956          481 P-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL---------CFPS-S------KQKNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       481 ~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~---------~~~~-~------~~~~~~~~~~~fs~dg~~lav~w  543 (667)
                      . ..-.....+|+++|..+.+..-|..|..|++...         .... .      ..+........|+|||++|+...
T Consensus       308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            1 1223466789999988888899999999998521         1110 0      11222333468999999999964


Q ss_pred             CCC
Q 005956          544 PGI  546 (667)
Q Consensus       544 ~~~  546 (667)
                      .-.
T Consensus       388 k~s  390 (441)
T d1qnia2         388 KFS  390 (441)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=1.2e-10  Score=120.19  Aligned_cols=273  Identities=8%  Similarity=-0.113  Sum_probs=164.2

Q ss_pred             cccccEEEEEEcCCCCEEE---EEECCCcEE--EEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          220 AHKGCIWTLKFSPDGRYLA---SGGEDGVVR--IWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~La---tgs~Dg~I~--vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ++.++...++..++++...   ++..+|..+  +||..++                                        
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~----------------------------------------   56 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG----------------------------------------   56 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT----------------------------------------
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC----------------------------------------
Confidence            4667777778888988532   234556545  4566542                                        


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEee-C-------CCcEEEE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFD-H-------HNYVTCV  355 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~-h-------~~~V~~l  355 (667)
                           +.+..+.++...  .++|+||| .|+..+          .|++|++||..+++++..+. +       ......+
T Consensus        57 -----~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~  129 (368)
T d1mdah_          57 -----VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII  129 (368)
T ss_dssp             -----EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred             -----cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccce
Confidence                 234445555443  58899999 666543          47889999999999888764 1       1223468


Q ss_pred             EEeeCCCCEEEEEe-cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc
Q 005956          356 QFNPIDDNYFISGS-IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  434 (667)
Q Consensus       356 ~f~p~d~~~l~sgs-~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~  434 (667)
                      +|+| |+++++++. .++.+.+||+.++++...........  .+......++..+.||.+.++++.......... ...
T Consensus       130 a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~-~~~  205 (368)
T d1mdah_         130 GNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIV-GAQ  205 (368)
T ss_dssp             EECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEEC-CCC
T ss_pred             EECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeee-ecc
Confidence            9999 999888776 56999999999999876544332221  111233466667788888888876554432211 111


Q ss_pred             ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeC--C----------CCCCeEEEEEcCCCCEEEEEe
Q 005956          435 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL--P----------KSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~--~----------~~~~v~~v~~spdg~~l~sgs  502 (667)
                      ....+...+....+.+++ ..+.  ..++.+++++...........  .          .......+++++++..++...
T Consensus       206 ~~~~~~~~~~~~~~~~~g-~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         206 CTGAQNCSSQAAQANYPG-MLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             SCTTSCBCSCCEEETTTT-EEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             cccccccceeecccccCc-EEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence            112223444566777774 3333  334556666644211111100  0          001123477889998876653


Q ss_pred             CC---------CcEEEEEcCCCCccccccccCccceeEEccCCcE-EEEecCCC
Q 005956          503 DD---------CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS-VAVQWPGI  546 (667)
Q Consensus       503 ~D---------g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~-lav~w~~~  546 (667)
                      .+         ..|.+||..+++.............+.|+|||+. +.+++..+
T Consensus       283 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             cCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC
Confidence            22         3599999999876555444445566899999974 44444433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.11  E-value=9.8e-11  Score=122.18  Aligned_cols=235  Identities=15%  Similarity=0.109  Sum_probs=153.0

Q ss_pred             cccccEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  298 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs-~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (667)
                      .|.-.+....++|||++|+... .+..|.++|+.+++..                                         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~-----------------------------------------  107 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTD-----------------------------------------  107 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE-----------------------------------------
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEe-----------------------------------------
Confidence            4556677777889999996665 6889999999975432                                         


Q ss_pred             CCcceeee-ccccceEEEEecCCC---eEEEEeCCC-----------------cEEEEecCCCeEeEEeeCCCcEEEEEE
Q 005956          299 ESPLQELH-GHKGDVLDLAWSNSN---YLLSCSMDK-----------------TVRMWQVGCNQCLNVFDHHNYVTCVQF  357 (667)
Q Consensus       299 ~~~~~~l~-gh~~~V~~l~~s~~~---~l~s~s~Dg-----------------~I~iWd~~~~~~~~~~~h~~~V~~l~f  357 (667)
                          ..+. .+...+..++|+|++   +++..+.+.                 .+..+|..+.+....+........+.|
T Consensus       108 ----~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~  183 (441)
T d1qnia2         108 ----KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDA  183 (441)
T ss_dssp             ----EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEE
T ss_pred             ----eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEE
Confidence                2221 345678889999888   333333321                 235588888888777766667888999


Q ss_pred             eeCCCCEEEEEecC-----------------------------------------CeEEEEecCCCeEEEecccCCceEE
Q 005956          358 NPIDDNYFISGSID-----------------------------------------GKVRIWGVCEKRVVDWADVRDVISA  396 (667)
Q Consensus       358 ~p~d~~~l~sgs~D-----------------------------------------g~v~iwdl~~~~~~~~~~~~~~v~~  396 (667)
                      +| +++++++++.+                                         +.+.+++.....++...........
T Consensus       184 sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhG  262 (441)
T d1qnia2         184 DY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHG  262 (441)
T ss_dssp             CS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCC
T ss_pred             CC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccC
Confidence            99 89988877644                                         2334444444444444444555778


Q ss_pred             EEEeeCCCEEEE-EecCCcEEEEEecCCcceee-eE----eeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956          397 ICYIPDGKGFIV-GSITGTCHFYKASGNDLKLE-KV----DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  470 (667)
Q Consensus       397 v~~spdg~~l~~-gs~dg~i~l~d~~~~~~~~~-~~----~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~  470 (667)
                      +.++|||+++++ +..++++.+||+........ .+    .+.... ...-.....+|.++| +.+.+..-|++|..|++
T Consensus       263 v~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~-~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         263 LNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP-ELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             EEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC-BCCSCEEEEEECSSS-EEEEEETTTTEEEEEEH
T ss_pred             ceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec-ccccCcccceecCCc-eEEEcccccceEEEecc
Confidence            999999998765 56789999999875321100 00    000100 011223456899986 77777889999999995


Q ss_pred             Cc------------ceeeEEe---CCCCCCeEEEEEcCCCCEEEEEe
Q 005956          471 VD------------VIHKFKG---LPKSGSQMSASFTTTGKHIISIG  502 (667)
Q Consensus       471 ~~------------~~~~~~~---~~~~~~v~~v~~spdg~~l~sgs  502 (667)
                      ..            ...++..   .+|...+.+.+++|||+||++++
T Consensus       341 ~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         341 ADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             HHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             chhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            31            2222211   12455556667899999999994

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=7e-08  Score=93.82  Aligned_cols=212  Identities=14%  Similarity=0.168  Sum_probs=135.7

Q ss_pred             cCCcceeeeccccceEEEEecCCC-eEEEEeCCC---cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC-C
Q 005956          298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-G  372 (667)
Q Consensus       298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg---~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D-g  372 (667)
                      .+.....+..+...+...+||||| .||......   .+.+.+...+.......+........|+| ++..++..... +
T Consensus        27 dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~  105 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTG  105 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTS
T ss_pred             CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC-CCCeeeEeeecCC
Confidence            344455566667778899999999 777554433   46777888777777777888999999999 88887766543 2


Q ss_pred             e--EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEE--EecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          373 K--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       373 ~--v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~--d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      .  +..+.....................+++++..++..+ .+|...+|  ++......  .+.      ..........
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~--~~~------~~~~~~~~~~  177 (269)
T d2hqsa1         106 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--RIT------WEGSQNQDAD  177 (269)
T ss_dssp             SCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--ECC------CSSSEEEEEE
T ss_pred             ccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce--eee------cccccccccc
Confidence            2  3344444444555555555566667788777665544 45544444  44433222  111      1125567789


Q ss_pred             EccCCCeEEEEEeCCCcEEEE--ECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcccc
Q 005956          448 FSRDESQRIMITSEDSKLRIL--DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDELCFPSS  520 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iw--d~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---Dg~I~iWd~~~~~~~~~  520 (667)
                      |+|++..++......+...+|  |.........  ..........|||||++|+-.+.   ...|++|+++++.....
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~l  253 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  253 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred             cccccceeEEEeecCCceeeeEeecccccceEe--ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence            999986556666666655554  4443333222  24556778899999999986554   34789999988765433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=6.9e-08  Score=96.31  Aligned_cols=226  Identities=12%  Similarity=0.087  Sum_probs=152.4

Q ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956          224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  303 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (667)
                      .+..++++|||+++++...+++|..|+...                                               ...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-----------------------------------------------~~~   61 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-----------------------------------------------NQQ   61 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-----------------------------------------------CEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-----------------------------------------------CEE
Confidence            477899999999999999999887776442                                               122


Q ss_pred             eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC--eEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956          304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  378 (667)
Q Consensus       304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~--~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd  378 (667)
                      .+......+.+++|.++| ++++...++.+.+|+....  ......  ........+.+.+ +++++++.+.++.+..+|
T Consensus        62 ~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          62 IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLID  140 (302)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeee
Confidence            334455678999999999 7777777788888876432  222222  3556788999999 898888888889999999


Q ss_pred             cCCCeEEEecc-----------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956          379 VCEKRVVDWAD-----------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  447 (667)
Q Consensus       379 l~~~~~~~~~~-----------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~  447 (667)
                      ...+....+..           ....+..+.+.. +..+++.+..+.|..++...............     ......++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~pdgia  214 (302)
T d2p4oa1         141 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-----QTNIDDFA  214 (302)
T ss_dssp             TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-----SCCCSSEE
T ss_pred             ccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccC-----CCCCcceE
Confidence            88876432111           112345555542 33445566778888888876543322111111     24456799


Q ss_pred             EccCCCeEEEEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEEEE---cCCCCEEEEEeCC
Q 005956          448 FSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASF---TTTGKHIISIGDD  504 (667)
Q Consensus       448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~---spdg~~l~sgs~D  504 (667)
                      +.++| .++++...++.|..++.......+ .........++++|   ++|++.|+.++..
T Consensus       215 ~d~dG-~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         215 FDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ECCCC-CEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            99997 677777788999999866433333 22224456889999   6788888766543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=5.8e-08  Score=94.61  Aligned_cols=191  Identities=10%  Similarity=0.047  Sum_probs=130.5

Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe-cc
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-AD  389 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~-~~  389 (667)
                      ...+++.+++ .+++....+.+++++-.+...+..........++++.+ +++++++-..+..+..++......... ..
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeeeec
Confidence            4678888888 55555566666666655555544444456788999999 888888777777788888766543332 22


Q ss_pred             cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956          390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  469 (667)
Q Consensus       390 ~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd  469 (667)
                      .......++++|+|+.+++...++.|..++.........  .     .........+++.++| +++++....+.|..++
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~--~-----~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--P-----FTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--C-----CSSCCSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccceeeee--e-----ccccCCCccceeeeee-eeeeeecCCCEEEEEe
Confidence            234567899999999888888888899998776543221  1     1123556899999986 6777777788898888


Q ss_pred             CCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956          470 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  511 (667)
Q Consensus       470 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd  511 (667)
                      ...................++++++|.++++-..++.|+..+
T Consensus       210 ~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         210 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             TTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            654433333333345678999999998877766666665444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.93  E-value=6.4e-07  Score=87.95  Aligned_cols=242  Identities=10%  Similarity=0.154  Sum_probs=157.9

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      -+.|+++++|+++++-..+..|++||.+. ..... +...                                  ..    
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~-~~~~----------------------------------~~----   64 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQ-FGEC----------------------------------GK----   64 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEE-ECCB----------------------------------SS----
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEE-eccc----------------------------------CC----
Confidence            57899999999888877788899998653 11100 0000                                  00    


Q ss_pred             eeccccceEEEEecCC-C-eEE-EEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          305 LHGHKGDVLDLAWSNS-N-YLL-SCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~-~-~l~-s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      -.+.......+++.++ + .++ ..+.++.|.+++.. +.....+.  .......+++.+ ++.++++....+.+.+++.
T Consensus        65 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~  142 (279)
T d1q7fa_          65 RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ  142 (279)
T ss_dssp             STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT
T ss_pred             CcccccccccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc
Confidence            0011112333444443 3 333 33445577777764 55666664  456778999998 8888888777788999987


Q ss_pred             CCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          380 CEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       380 ~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      ....+..+  ..+......+++.++|+.+++....+.|.+||......  ..+..    .........|++.++| ++++
T Consensus       143 ~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~--~~~g~----~g~~~~P~giavD~~G-~i~V  215 (279)
T d1q7fa_         143 NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGG----EGITNYPIGVGINSNG-EILI  215 (279)
T ss_dssp             TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESC----TTTSCSEEEEEECTTC-CEEE
T ss_pred             CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCcee--eeecc----cccccCCcccccccCC-eEEE
Confidence            65544332  33456688899999999888888899999999865422  12211    1223557899999997 5555


Q ss_pred             EEe-CCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956          458 ITS-EDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  516 (667)
Q Consensus       458 ~~s-~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~  516 (667)
                      +-. .+..|.+|+.. +.+..+...........+++.++|.+++ ++.+..|++|.+....
T Consensus       216 ad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         216 ADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            543 34579999864 4455555544455688999999997555 5678999999987653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.93  E-value=8.1e-08  Score=95.77  Aligned_cols=230  Identities=9%  Similarity=-0.057  Sum_probs=154.3

Q ss_pred             ceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC--eEEE-
Q 005956          311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK--RVVD-  386 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~--~~~~-  386 (667)
                      .+..+++.||| ++++...+++|..|+.. ++..........+.+++|.+ +++++++...++.+..++....  .... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeec
Confidence            57889999999 77788889999888865 44444556778899999999 9999999888888888876542  2322 


Q ss_pred             -ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc---CcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          387 -WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK---KTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       387 -~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~---~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                       ........+.+++.++|+++++.+.++.+..++..+..............   .........+.+..  ..++++.+..
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~  184 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEK  184 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCC
Confidence             22344568899999999988888888888888887664432211111111   11123456676654  3677777888


Q ss_pred             CcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cccCccceeEE---ccC
Q 005956          463 SKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QKNSVRSCEHF---FSE  535 (667)
Q Consensus       463 g~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~f---s~d  535 (667)
                      +.|+.++.....  ..............++|+++|++.++...++.|..++..........  ......+.++|   ++|
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D  264 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGD  264 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTT
T ss_pred             CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCC
Confidence            899988854211  11111112334567999999998888888899999987654322221  11223456789   778


Q ss_pred             CcEEEEecC
Q 005956          536 GVSVAVQWP  544 (667)
Q Consensus       536 g~~lav~w~  544 (667)
                      ++.|.+...
T Consensus       265 ~~~Lyvtt~  273 (302)
T d2p4oa1         265 CTAIYVVTN  273 (302)
T ss_dssp             TTEEEEEEC
T ss_pred             CCEEEEECC
Confidence            888777544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.90  E-value=1.2e-06  Score=87.61  Aligned_cols=200  Identities=11%  Similarity=0.078  Sum_probs=126.4

Q ss_pred             ceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CC----CcEEEEEEeeCCCCEEEEEec--------------
Q 005956          311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HH----NYVTCVQFNPIDDNYFISGSI--------------  370 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~----~~V~~l~f~p~d~~~l~sgs~--------------  370 (667)
                      .-..+.|.+++ .|+.+.....|...+........... ..    .....+++.+ ++++.++-..              
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence            35789999998 77888777778888887654332221 11    1357789999 8888776432              


Q ss_pred             -CCeEEEEecCCCeEEEecccCCceEEEEEeeCCC-----EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956          371 -DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-----GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  444 (667)
Q Consensus       371 -Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~-----~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~  444 (667)
                       .|.|..++.. ++.......-...+.++|+|+++     .+++-+..+.|..||+...........+............
T Consensus       151 ~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence             2345555543 33333333334467899999875     4444567788999988754332221111111111123456


Q ss_pred             EEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCC
Q 005956          445 GIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDEL  515 (667)
Q Consensus       445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l-~sgs~Dg~I~iWd~~~~  515 (667)
                      .+++..+| +++++....+.|.+||....  ...+..  ....+++++|.|+++.| ++.+.+|.|+..++...
T Consensus       230 GiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         230 GMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             eeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            89999987 67777778899999996632  333333  45678899999999755 55566788888776543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.84  E-value=2.2e-06  Score=87.56  Aligned_cols=166  Identities=10%  Similarity=0.058  Sum_probs=105.5

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEec-CCeEEEEecCC-CeEE-----EecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEE
Q 005956          348 HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCE-KRVV-----DWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYK  419 (667)
Q Consensus       348 h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~-~~~~-----~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d  419 (667)
                      ....+.++.|+| ++++++++.. ...|.+|+... +...     ...........++|+|+|+++.+.. .+++|.+|+
T Consensus       143 ~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         143 ENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             TTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence            344688999999 9998888764 35788887654 3222     1223456789999999999886655 578999999


Q ss_pred             ecCCcceee-e---Eeeccc--------cCcCCCCeEEEEEccCCCeEEEEEe-CCC-----cEEEEECCcc---e---e
Q 005956          420 ASGNDLKLE-K---VDFHDR--------KKTSGNKITGIQFSRDESQRIMITS-EDS-----KLRILDGVDV---I---H  475 (667)
Q Consensus       420 ~~~~~~~~~-~---~~~~~~--------~~~~~~~I~~l~~sp~g~~~l~~~s-~dg-----~I~iwd~~~~---~---~  475 (667)
                      +........ .   ..+...        ..........+.++|+| ++|+++. .+.     .|..|+....   .   .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            976654322 1   111100        00112235678999997 5555553 222     3777765421   1   1


Q ss_pred             eEEeCCCCCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCC
Q 005956          476 KFKGLPKSGSQMSASFTT-TGKHIISIG-DDCRVYVWNYDEL  515 (667)
Q Consensus       476 ~~~~~~~~~~v~~v~~sp-dg~~l~sgs-~Dg~I~iWd~~~~  515 (667)
                      .............++++| +|++|+++. .++.|.||+++..
T Consensus       301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            111222345567899998 899887775 5689999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=2.7e-07  Score=89.71  Aligned_cols=227  Identities=7%  Similarity=0.003  Sum_probs=147.8

Q ss_pred             cceEEEEecCCC-eEEE-EeCCCcEEEEecCCCeEeEE-eeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956          310 GDVLDLAWSNSN-YLLS-CSMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  386 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s-~s~Dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~  386 (667)
                      ..-.+|++.++| .+++ .+..+.|..++......... +........+++.+ +++++++....+.+++++-.+...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeee
Confidence            345789999998 4443 34556677766654332222 22334567889998 88888877777777777666555554


Q ss_pred             ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 005956          387 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  466 (667)
Q Consensus       387 ~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~  466 (667)
                      .......+..+++.++|+.+++-.....+..++.........  ...+     .....++++.++| .++++...++.|.
T Consensus        93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~-----~~~p~~i~~~~~g-~~~v~~~~~~~i~  164 (260)
T d1rwia_          93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTG-----LNDPDGVAVDNSG-NVYVTDTDNNRVV  164 (260)
T ss_dssp             CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC--CCCS-----CCSCCEEEECTTC-CEEEEEGGGTEEE
T ss_pred             eeeeeeecccccccccceeEeeccccccccccccccceeeee--eecc-----cCCcceeeecCCC-CEeeecccccccc
Confidence            444446688999999998887766666777776654332211  1111     2345789999986 6777778888999


Q ss_pred             EEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc-CccceeEEccCCcEEEEecCC
Q 005956          467 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN-SVRSCEHFFSEGVSVAVQWPG  545 (667)
Q Consensus       467 iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~~~~~fs~dg~~lav~w~~  545 (667)
                      .+|...................++++++|+++++....+.|..++............. .....+++.++|.++++.|..
T Consensus       165 ~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         165 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             ccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence            9997643333332234566789999999998888888888998887655433222221 233467899999877776653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=6.6e-07  Score=86.65  Aligned_cols=205  Identities=11%  Similarity=0.088  Sum_probs=136.1

Q ss_pred             cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC---eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEE
Q 005956          331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI  407 (667)
Q Consensus       331 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg---~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~  407 (667)
                      .|.|.|...........+...+...+|+| ||+.|+......   .+.+.+..++.......+........|+|+|+.++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            57777887777777777888899999999 999998876543   47888888888888888888899999999999988


Q ss_pred             EEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcE--EEEECCcceeeEEeCCCCC
Q 005956          408 VGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL--RILDGVDVIHKFKGLPKSG  484 (667)
Q Consensus       408 ~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I--~iwd~~~~~~~~~~~~~~~  484 (667)
                      .... ++...++............      ...........+++++...+++...++..  .+.+........ ......
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~  171 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQV------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGS  171 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEEC------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSS
T ss_pred             EeeecCCccceeecccccccceee------eeccccccccccccccccceecccccCCceEeeeeccccccee-eecccc
Confidence            7654 3444444433332221111      11124455667788766666666666654  444554332222 222456


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956          485 SQMSASFTTTGKHIISIGDDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       485 ~v~~v~~spdg~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ......|+|++++++..+.++   .|.+.+...+....... ........|+|||+.||....
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-TFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-SSSCEEEEECTTSSEEEEEEE
T ss_pred             cccccccccccceeEEEeecCCceeeeEeecccccceEeec-CccccceEECCCCCEEEEEEc
Confidence            677889999999998876654   45555666555433333 233345689999999988644

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.77  E-value=7.2e-06  Score=81.93  Aligned_cols=234  Identities=10%  Similarity=0.064  Sum_probs=145.7

Q ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956          223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  302 (667)
Q Consensus       223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (667)
                      -.+-.++|.++|++.++-...+.|..|+..+..                                             ..
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~---------------------------------------------~~   74 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---------------------------------------------IK   74 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCC---------------------------------------------EE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCe---------------------------------------------EE
Confidence            345689999999977777778888777765421                                             11


Q ss_pred             eeeeccccceEEEEecCCCeEEEEe-C----CCcEEEEecCCCeEeEEeeC---CCcEEEEEEeeCCCCEEEEEec----
Q 005956          303 QELHGHKGDVLDLAWSNSNYLLSCS-M----DKTVRMWQVGCNQCLNVFDH---HNYVTCVQFNPIDDNYFISGSI----  370 (667)
Q Consensus       303 ~~l~gh~~~V~~l~~s~~~~l~s~s-~----Dg~I~iWd~~~~~~~~~~~h---~~~V~~l~f~p~d~~~l~sgs~----  370 (667)
                      ..+.........|++.++|.|+.+. .    .+.|...+..+........+   ......+++.+ ++++.++...    
T Consensus        75 ~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~  153 (319)
T d2dg1a1          75 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYST  153 (319)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTT
T ss_pred             EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccc
Confidence            2222334457889999999444433 2    23345555555554444432   33577899999 8887665432    


Q ss_pred             --CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCcceeeeEeec-cccCcCCCCeEEE
Q 005956          371 --DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFH-DRKKTSGNKITGI  446 (667)
Q Consensus       371 --Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~~~~~~~-~~~~~~~~~I~~l  446 (667)
                        .+.+..++...+.+......-...+.++|+|+++.|.++ +..+.|..|++............. ............+
T Consensus       154 ~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl  233 (319)
T d2dg1a1         154 NPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC  233 (319)
T ss_dssp             BCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE
T ss_pred             cCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeee
Confidence              234666666655554444444557889999999876554 567899999987543322211100 0011111235689


Q ss_pred             EEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeC----CCCCCeEEEEEcCCCCEEEEEeC
Q 005956          447 QFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGL----PKSGSQMSASFTTTGKHIISIGD  503 (667)
Q Consensus       447 ~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~----~~~~~v~~v~~spdg~~l~sgs~  503 (667)
                      ++.++| ++.++....+.|.+||.. +.+..+...    .+...+++++|.+++..+++...
T Consensus       234 ~vD~~G-~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         234 CIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eEcCCC-CEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            999997 677777888999999965 334444432    23445789999998877766543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.6e-07  Score=94.74  Aligned_cols=274  Identities=12%  Similarity=0.082  Sum_probs=147.9

Q ss_pred             ceEEEEecCCC-eEEEE---------eCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956          311 DVLDLAWSNSN-YLLSC---------SMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  377 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~s~---------s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw  377 (667)
                      .+....||||+ +++..         +..+.+.++|+.++.......   ....+....|+| +++.|+... ++.|.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEE
Confidence            45677899999 55544         335778999999887655433   234566689999 999888765 6789999


Q ss_pred             ecCCCeEEEecc--cCC-----------------ceEEEEEeeCCCEEEEEecC-CcEEEE-------------------
Q 005956          378 GVCEKRVVDWAD--VRD-----------------VISAICYIPDGKGFIVGSIT-GTCHFY-------------------  418 (667)
Q Consensus       378 dl~~~~~~~~~~--~~~-----------------~v~~v~~spdg~~l~~gs~d-g~i~l~-------------------  418 (667)
                      +..++..++...  ...                 .-.++-|||||++||....| ..+..|                   
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            888776554322  111                 12578899999999987532 333333                   


Q ss_pred             --------------EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE-EeCCC---cEEEEECCccee--eEE
Q 005956          419 --------------KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI-TSEDS---KLRILDGVDVIH--KFK  478 (667)
Q Consensus       419 --------------d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~-~s~dg---~I~iwd~~~~~~--~~~  478 (667)
                                    |+.+......... .........-+..+.|+|++ .+++. ...+.   .|.++|......  .+.
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~y~~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMP-PDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCC-CCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEec-cCcCccccceeeeeEEcCCC-eEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence                          3322211110000 00000112236788999986 44443 33332   577788664322  222


Q ss_pred             eCCCCCC----eEEEEEcCCCCEEE---EEeCCC--cEEEEEcCC-------CCcccccc-ccCccceeEEccCCcEEEE
Q 005956          479 GLPKSGS----QMSASFTTTGKHII---SIGDDC--RVYVWNYDE-------LCFPSSKQ-KNSVRSCEHFFSEGVSVAV  541 (667)
Q Consensus       479 ~~~~~~~----v~~v~~spdg~~l~---sgs~Dg--~I~iWd~~~-------~~~~~~~~-~~~~~~~~~fs~dg~~lav  541 (667)
                      .. ....    -....|++||+.++   ..-.+|  .++...+..       ........ .-.+...+.|..++..+-.
T Consensus       298 e~-~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF  376 (465)
T d1xfda1         298 DE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF  376 (465)
T ss_dssp             EE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred             Ec-CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEE
Confidence            11 1221    23457899998543   222333  444444321       11111122 2233445678888877766


Q ss_pred             ecCCCCcccccccCCCCCCcCccC--cCCCCCCcccCCCcccCCCCCCCC
Q 005956          542 QWPGIGTEQKSLCSSSLRDCSQKW--DNLETAPWIRDSERFSLGSWFSND  589 (667)
Q Consensus       542 ~w~~~~~~~~~~~~~~~~~~~~~w--~~~~~~~~~~~~~~fS~~~~~~~~  589 (667)
                      ......+..+++..-.+++.....  ....+.........|||++.|++.
T Consensus       377 ~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~  426 (465)
T d1xfda1         377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (465)
T ss_dssp             EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             EEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEE
Confidence            545555555565554444432210  000111112346678998888874

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.58  E-value=3.1e-05  Score=77.16  Aligned_cols=229  Identities=11%  Similarity=0.078  Sum_probs=143.8

Q ss_pred             eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEec----CCeEEEEe
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI----DGKVRIWG  378 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~----Dg~v~iwd  378 (667)
                      +......+..++|.++| ++++-...+.|..|+..+++....+ ........++|.+ +++++++...    .+.+...+
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEc
Confidence            33334456789999998 6666667889999998887766555 3556788999999 8887776543    23456666


Q ss_pred             cCCCeEEEecc---cCCceEEEEEeeCCCEEEEEecC------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956          379 VCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  449 (667)
Q Consensus       379 l~~~~~~~~~~---~~~~v~~v~~spdg~~l~~gs~d------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s  449 (667)
                      ..+..+.....   ....++.+++.++|++.++....      +.+..++........  +. ..     ....+.++|+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~-~~-----~~~pnGia~s  185 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--II-QN-----ISVANGIALS  185 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EE-EE-----ESSEEEEEEC
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE--Ee-ec-----cceeeeeeec
Confidence            66655443322   23457889999999866653221      234444433322211  11 11     1345789999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCc---cee-----eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956          450 RDESQRIMITSEDSKLRILDGVD---VIH-----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       450 p~g~~~l~~~s~dg~I~iwd~~~---~~~-----~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~  521 (667)
                      |++..++++-+..+.|+.||+..   ...     .............+++.++|++.++....+.|.+|+-+ ++.....
T Consensus       186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~~l~~i  264 (319)
T d2dg1a1         186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQI  264 (319)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEE
T ss_pred             cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-CcEEEEE
Confidence            99755666767788999998642   111     11112223346789999999988888889999999964 4432211


Q ss_pred             c-------ccCccceeEEccCCcEEEEec
Q 005956          522 Q-------KNSVRSCEHFFSEGVSVAVQW  543 (667)
Q Consensus       522 ~-------~~~~~~~~~fs~dg~~lav~w  543 (667)
                      .       ......++.|.+++..+.+..
T Consensus       265 ~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         265 LIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             eCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            1       112345778888776665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.57  E-value=2.1e-05  Score=78.19  Aligned_cols=228  Identities=11%  Similarity=0.027  Sum_probs=142.2

Q ss_pred             cceEEEEecCCCeEEEEeC--------CCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956          310 GDVLDLAWSNSNYLLSCSM--------DKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRI  376 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~--------Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i  376 (667)
                      .....++|.++|.|+..+.        +++|..||..++.......     .......++|.+ +++.++++.....|..
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEE
Confidence            3456788999994333322        4678889988876554432     122467899999 8888888887778999


Q ss_pred             EecCCCeEEEeccc-C----CceEEEEEeeCCCEEEEEec---------------CCcEEEEEecCCcceeeeEeecccc
Q 005956          377 WGVCEKRVVDWADV-R----DVISAICYIPDGKGFIVGSI---------------TGTCHFYKASGNDLKLEKVDFHDRK  436 (667)
Q Consensus       377 wdl~~~~~~~~~~~-~----~~v~~v~~spdg~~l~~gs~---------------dg~i~l~d~~~~~~~~~~~~~~~~~  436 (667)
                      +|..++........ .    ..++.+++.++|+..++-..               .|.+..++... +.. ....  .  
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~-~~~~--~--  170 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI-QVDT--A--  170 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE-EEEE--E--
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee-EeeC--C--
Confidence            99877654432221 1    13678999999987776422               12333333322 111 1111  0  


Q ss_pred             CcCCCCeEEEEEccCCC----eEEEEEeCCCcEEEEECCcc--e---eeEEeCC--CCCCeEEEEEcCCCCEEEEEeCCC
Q 005956          437 KTSGNKITGIQFSRDES----QRIMITSEDSKLRILDGVDV--I---HKFKGLP--KSGSQMSASFTTTGKHIISIGDDC  505 (667)
Q Consensus       437 ~~~~~~I~~l~~sp~g~----~~l~~~s~dg~I~iwd~~~~--~---~~~~~~~--~~~~v~~v~~spdg~~l~sgs~Dg  505 (667)
                         ...-+.++|+|++.    .++++-+..+.|+.||+...  .   ..+....  .....-.+++..+|++.++....+
T Consensus       171 ---~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         171 ---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             ---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             ---cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence               12346889988753    24455567788999885421  1   1121111  223456899999999888877789


Q ss_pred             cEEEEEcCCCCccccccc-cCccceeEEccCCcEEEEecCCCC
Q 005956          506 RVYVWNYDELCFPSSKQK-NSVRSCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       506 ~I~iWd~~~~~~~~~~~~-~~~~~~~~fs~dg~~lav~w~~~~  547 (667)
                      .|++||.+++........ ....++++|.||+..|-+.....+
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g  290 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred             EEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCC
Confidence            999999887765433322 234566899999987777665544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.49  E-value=4.1e-05  Score=74.53  Aligned_cols=224  Identities=10%  Similarity=0.143  Sum_probs=146.0

Q ss_pred             ceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeC-------CCcEEEEEEeeCCCCEEEEE-ecCCeEEEEecCC
Q 005956          311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCE  381 (667)
Q Consensus       311 ~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~d~~~l~sg-s~Dg~v~iwdl~~  381 (667)
                      ....|++.+++ .+++-..+..|++||.+ ++.+..+..       ......+++.+..+.++++. +.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            46789999988 66666677899999976 677776641       12345667666334444443 3456788888755


Q ss_pred             CeEEEe-cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          382 KRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       382 ~~~~~~-~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                      .....+ .........+++.++|+.+++....+.+.+++......  ..+..    ..+......+++.+++ ..+++..
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~--~~~g~----~~~~~~~~~i~~d~~g-~i~v~d~  175 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL--HKFGC----SKHLEFPNGVVVNDKQ-EIFISDN  175 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE--EEEEC----TTTCSSEEEEEECSSS-EEEEEEG
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCcee--ecccc----cccccccceeeeccce-eEEeeec
Confidence            444433 23345678899999999888877778888887654321  22211    1234678889999986 7777888


Q ss_pred             CCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCccccc--cc-cCccceeEEccC
Q 005956          461 EDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSK--QK-NSVRSCEHFFSE  535 (667)
Q Consensus       461 ~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~~~~~--~~-~~~~~~~~fs~d  535 (667)
                      ..+.|++||.. +....+...........+++.++|+.+++-.. ++.|.+|+.+ ++.....  .. ......+++.+|
T Consensus       176 ~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         176 RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred             cccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCC
Confidence            88999999976 33444433334556789999999997776543 4579999855 4332221  11 122344688999


Q ss_pred             CcEEEEec
Q 005956          536 GVSVAVQW  543 (667)
Q Consensus       536 g~~lav~w  543 (667)
                      |.+++..+
T Consensus       255 G~l~V~~~  262 (279)
T d1q7fa_         255 GSVVLASK  262 (279)
T ss_dssp             TEEEEEET
T ss_pred             CcEEEEeC
Confidence            98766654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.40  E-value=1.5e-05  Score=81.05  Aligned_cols=159  Identities=13%  Similarity=0.120  Sum_probs=100.5

Q ss_pred             cceEEEEecCCC-eEEEEeC-CCcEEEEecCCC-eEe--EEe---eCCCcEEEEEEeeCCCCEEEEE-ecCCeEEEEecC
Q 005956          310 GDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCN-QCL--NVF---DHHNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVC  380 (667)
Q Consensus       310 ~~V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~~-~~~--~~~---~h~~~V~~l~f~p~d~~~l~sg-s~Dg~v~iwdl~  380 (667)
                      ..+.++.|+|+| +++++.. ...|.+|++... ...  ...   ........++|+| +++++++. ..+++|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence            347899999999 6666653 457888876543 222  111   2456789999999 88877554 467899999987


Q ss_pred             CCeEEEe--------c------------ccCCceEEEEEeeCCCEEEEEec------CCcEEEEEecCCcceeeeEeecc
Q 005956          381 EKRVVDW--------A------------DVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHD  434 (667)
Q Consensus       381 ~~~~~~~--------~------------~~~~~v~~v~~spdg~~l~~gs~------dg~i~l~d~~~~~~~~~~~~~~~  434 (667)
                      .+.....        .            ........+.++|||++|+++..      .+.|..|++...........+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            6542210        0            11123567899999999988753      22377777765433222222211


Q ss_pred             ccCcCCCCeEEEEEcc-CCCeEEEEE-eCCCcEEEEECC
Q 005956          435 RKKTSGNKITGIQFSR-DESQRIMIT-SEDSKLRILDGV  471 (667)
Q Consensus       435 ~~~~~~~~I~~l~~sp-~g~~~l~~~-s~dg~I~iwd~~  471 (667)
                       ....+.....++++| +| ++|+++ ..++.|.+|+..
T Consensus       304 -~~~~G~~p~~i~~~p~~G-~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         304 -TPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             -CSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEEE
T ss_pred             -EEcCCCCccEEEecCCCC-CEEEEEeCCCCeEEEEEEe
Confidence             222335567799998 55 555555 677899999754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.40  E-value=0.00016  Score=70.76  Aligned_cols=187  Identities=12%  Similarity=0.062  Sum_probs=124.1

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEecC----CeEEEEecC
Q 005956          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSID----GKVRIWGVC  380 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~D----g~v~iwdl~  380 (667)
                      ..+.++++.+++.|+.++.+ -|.++|..+++......     ....+..+.+.| ++++.++....    +.-.+|.+.
T Consensus        59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec
Confidence            45778888888866666665 48899999887655543     223578899999 88877665432    345677777


Q ss_pred             CCeEEEecccCCceEEEEEeeCCCEEEE-EecCCcEEEEEecCCccee--eeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          381 EKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       381 ~~~~~~~~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~~~~~~~--~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      .+++......-...+.++|+++++.++. -+..+.|..|++.......  ....+. ...........+++..+| ++.+
T Consensus       137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~-~~~~~~g~pdG~~vD~~G-nlWv  214 (295)
T d2ghsa1         137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-DSTGIKGGMDGSVCDAEG-HIWN  214 (295)
T ss_dssp             TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-ECTTSSSEEEEEEECTTS-CEEE
T ss_pred             CCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEe-ccCcccccccceEEcCCC-CEEe
Confidence            7777665555556789999999987655 4567889989875432211  111110 011123457889999986 6677


Q ss_pred             EEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEc-CCCCEEEEEe
Q 005956          458 ITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFT-TTGKHIISIG  502 (667)
Q Consensus       458 ~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~s-pdg~~l~sgs  502 (667)
                      +.-..+.|..||.. +....+..  ....+++++|- +|.+.|+..+
T Consensus       215 a~~~~g~V~~~dp~G~~~~~i~l--P~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         215 ARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEE
T ss_pred             eeeCCCceEEecCCCcEeeEecC--CCCceEEEEEeCCCCCEEEEEE
Confidence            77778899999965 44455544  34578999994 7776665443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.5e-05  Score=79.45  Aligned_cols=275  Identities=12%  Similarity=0.082  Sum_probs=148.5

Q ss_pred             cEEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          224 CIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       224 ~I~~v~fspdg~~Latgs~---------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      .+....|||||++|+.+..         .+.+.|+|+.++....                                    
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~------------------------------------  105 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS------------------------------------  105 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE------------------------------------
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee------------------------------------
Confidence            4567789999999887643         4567777776532211                                    


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcE-----------------EE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TC  354 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V-----------------~~  354 (667)
                             +.........+....|||+| .|+-.. ++.|.+.+..++..++...  ....|                 .+
T Consensus       106 -------l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1         106 -------LDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             -------CCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             -------ccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence                   11111223445668899999 665544 5678888887776655442  11112                 46


Q ss_pred             EEEeeCCCCEEEEEecC-C---------------------------------eEEEEecCCCeEEEe-------cccCCc
Q 005956          355 VQFNPIDDNYFISGSID-G---------------------------------KVRIWGVCEKRVVDW-------ADVRDV  393 (667)
Q Consensus       355 l~f~p~d~~~l~sgs~D-g---------------------------------~v~iwdl~~~~~~~~-------~~~~~~  393 (667)
                      +-|+| |+++|+....| .                                 .+.++|+.++.....       ......
T Consensus       178 ~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y  256 (465)
T d1xfda1         178 HWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (465)
T ss_dssp             EEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             EEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccce
Confidence            77999 99999886532 2                                 244555544432110       011223


Q ss_pred             eEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE--EeCCC--cE
Q 005956          394 ISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI--TSEDS--KL  465 (667)
Q Consensus       394 v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~--~s~dg--~I  465 (667)
                      +..+.|+|+++.++....-    ..+.++|..++............-  -...-....|+|+|..+++.  .-.+|  .+
T Consensus       257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~w--v~~~~~~p~~~~dg~~~~fi~~se~~g~~~l  334 (465)
T d1xfda1         257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW--LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF  334 (465)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC--CCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred             eeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCce--EeccCCceeEccCCCeeEEEEeeeecccCce
Confidence            6788999998766654332    257788888776543211111000  00112346789998654433  22333  34


Q ss_pred             EEEECC--------cceeeEEeCCCCCCeEEE-EEcCCCCEEE-EEeCCC--cEEEEE--cCCCCccccc----cccCcc
Q 005956          466 RILDGV--------DVIHKFKGLPKSGSQMSA-SFTTTGKHII-SIGDDC--RVYVWN--YDELCFPSSK----QKNSVR  527 (667)
Q Consensus       466 ~iwd~~--------~~~~~~~~~~~~~~v~~v-~~spdg~~l~-sgs~Dg--~I~iWd--~~~~~~~~~~----~~~~~~  527 (667)
                      +.+++.        .....+.  ...-.|..+ .|+.+++.|+ ++..++  .-++|.  +.+.......    ......
T Consensus       335 y~~~~~~~~~~~~~~~~~~LT--~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~  412 (465)
T d1xfda1         335 YHITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTY  412 (465)
T ss_dssp             EEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCC
T ss_pred             EEEEeccccccCCCceeEEec--cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCE
Confidence            333211        0111111  123334554 6888888775 443332  333444  4443322111    112223


Q ss_pred             ceeEEccCCcEEEEecCCCC
Q 005956          528 SCEHFFSEGVSVAVQWPGIG  547 (667)
Q Consensus       528 ~~~~fs~dg~~lav~w~~~~  547 (667)
                      ....|||+|.+++..+.+..
T Consensus       413 ~~~~~S~~~~y~v~~~s~~~  432 (465)
T d1xfda1         413 FSASFSHSMDFFLLKCEGPG  432 (465)
T ss_dssp             CEEEECTTSSEEEEECCSSS
T ss_pred             EEEEECCCCCEEEEEeecCC
Confidence            45789999999999887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.35  E-value=0.0004  Score=67.91  Aligned_cols=217  Identities=12%  Similarity=0.084  Sum_probs=142.8

Q ss_pred             EEEecC-CCeEE-EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc-
Q 005956          314 DLAWSN-SNYLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-  390 (667)
Q Consensus       314 ~l~~s~-~~~l~-s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~-  390 (667)
                      ...|.+ ++.|+ +=-..+.|.-||..+++. ..+.....+.++++.+ ++.++++ +.+ -+.++|..+++...+... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            456776 44444 444668899999998865 4566677889999998 7766654 444 589999999887654332 


Q ss_pred             ----CCceEEEEEeeCCCEEEEEec----CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956          391 ----RDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  462 (667)
Q Consensus       391 ----~~~v~~v~~spdg~~l~~gs~----dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d  462 (667)
                          ...++.+.+.|+|+..++...    .+.-.+|.+..++.......+        ..-+.+.|++++..++++-+..
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~--------~~~Ng~~~s~d~~~l~~~dt~~  169 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI--------SIPNSICFSPDGTTGYFVDTKV  169 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE--------SSEEEEEECTTSCEEEEEETTT
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc--------CCcceeeecCCCceEEEeeccc
Confidence                235788999999986665432    235567777665443221111        3467899999986677777788


Q ss_pred             CcEEEEECCc-------ceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc-cCccceeEEc
Q 005956          463 SKLRILDGVD-------VIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK-NSVRSCEHFF  533 (667)
Q Consensus       463 g~I~iwd~~~-------~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~~~~~fs  533 (667)
                      +.|+.+++..       ....+ ......+....+++..+|.+.++.-..+.|..||.+ ++....... ....++++|-
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred             ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEe
Confidence            8999998531       11122 222234567889999999988877778899999965 444333222 2345666785


Q ss_pred             -cCCcEEEEec
Q 005956          534 -SEGVSVAVQW  543 (667)
Q Consensus       534 -~dg~~lav~w  543 (667)
                       +|...|-|..
T Consensus       249 G~d~~~LyvTt  259 (295)
T d2ghsa1         249 GPDASRLLVTS  259 (295)
T ss_dssp             STTSCEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence             6767666643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.02  E-value=7.2e-05  Score=71.83  Aligned_cols=199  Identities=12%  Similarity=0.090  Sum_probs=107.7

Q ss_pred             ceeeeccccceEEEEecCCC-eEEEEe-CCC-----cEEEEecCCCeEeEEeeC-------CCcEEEEEEeeCCCCEEEE
Q 005956          302 LQELHGHKGDVLDLAWSNSN-YLLSCS-MDK-----TVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFIS  367 (667)
Q Consensus       302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg-----~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~d~~~l~s  367 (667)
                      ...+..+.+.+...+||||| .|+... .++     .|.+++..+++..+...+       ........|+| +++.|+.
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~  111 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIIS  111 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEE
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC-CCCEEEE
Confidence            34556667778899999999 666433 222     477778888877655322       23456789999 8988887


Q ss_pred             EecC------CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCC-----------cEEEEEecCCcceeee
Q 005956          368 GSID------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITG-----------TCHFYKASGNDLKLEK  429 (667)
Q Consensus       368 gs~D------g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg-----------~i~l~d~~~~~~~~~~  429 (667)
                      ....      ..+...+...+........  .... .+.+++..++... ...           ...+..........  
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  186 (281)
T d1k32a2         112 TDAMQPFSSMTCLYRVENDGINFVPLNLG--PATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK--  186 (281)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCSC--SCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE--
T ss_pred             EEccCCCccceeeeeecCCCceeEEecCC--ccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceee--
Confidence            5432      2355666666655443222  1222 3445554443322 111           11111111111110  


Q ss_pred             EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005956          430 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  506 (667)
Q Consensus       430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~  506 (667)
                      .      ...........+.++  ..+.....++  .|+++|+.... ..+... ....  ...|+|||+.|+.. .++.
T Consensus       187 ~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~-~~~~--~~~~SpDG~~I~f~-~~~~  254 (281)
T d1k32a2         187 I------VDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSF-TDYY--PRHLNTDGRRILFS-KGGS  254 (281)
T ss_dssp             E------ECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCC-CSSC--EEEEEESSSCEEEE-ETTE
T ss_pred             c------cCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecC-CCcc--cccCcCCCCEEEEE-eCCE
Confidence            0      011133445556654  3444444443  57777766332 222211 2222  34689999998865 4688


Q ss_pred             EEEEEcCCCCcc
Q 005956          507 VYVWNYDELCFP  518 (667)
Q Consensus       507 I~iWd~~~~~~~  518 (667)
                      |+++|+++++..
T Consensus       255 l~~~d~~~g~~~  266 (281)
T d1k32a2         255 IYIFNPDTEKIE  266 (281)
T ss_dssp             EEEECTTTCCEE
T ss_pred             EEEEECCCCCEE
Confidence            999999988754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.93  E-value=0.00024  Score=67.92  Aligned_cols=212  Identities=8%  Similarity=-0.020  Sum_probs=118.1

Q ss_pred             ecCC--C-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec-C-----CeEEEEecCCCeEEEe
Q 005956          317 WSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-D-----GKVRIWGVCEKRVVDW  387 (667)
Q Consensus       317 ~s~~--~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~-D-----g~v~iwdl~~~~~~~~  387 (667)
                      .+|+  | .++-.+ ++.|.+.|+.+++..+...+...+...+|+| |++.|+.... +     ..|.++++.+++...+
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4677  7 555443 4568888999998877777888899999999 9998886543 2     2488888888887765


Q ss_pred             cccC-------CceEEEEEeeCCCEEEEEecCC------cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956          388 ADVR-------DVISAICYIPDGKGFIVGSITG------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  454 (667)
Q Consensus       388 ~~~~-------~~v~~v~~spdg~~l~~gs~dg------~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~  454 (667)
                      ....       .......|+|+|+.|+......      .+...+.........          ....... .+.+++..
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~  152 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL----------NLGPATH-ILFADGRR  152 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC----------CSCSCSE-EEEETTEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe----------cCCccce-eeecCCCe
Confidence            4332       3356788999999988754321      233444433322110          0122223 34444434


Q ss_pred             EEEEEeCCC-----------cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCccccc
Q 005956          455 RIMITSEDS-----------KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD--DCRVYVWNYDELCFPSSK  521 (667)
Q Consensus       455 ~l~~~s~dg-----------~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~--Dg~I~iWd~~~~~~~~~~  521 (667)
                      .++......           ...+............ ..........++++. .+.....  ...|+++|+++.......
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt  230 (281)
T d1k32a2         153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHT  230 (281)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred             EEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccc-cceecccccccceEEEeCCCCceEEee
Confidence            444433221           1111111111111111 123344455565553 2222322  246888898887654433


Q ss_pred             cccCccceeEEccCCcEEEEecC
Q 005956          522 QKNSVRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       522 ~~~~~~~~~~fs~dg~~lav~w~  544 (667)
                      ... ......|+|||+.|+..-.
T Consensus       231 ~~~-~~~~~~~SpDG~~I~f~~~  252 (281)
T d1k32a2         231 SFT-DYYPRHLNTDGRRILFSKG  252 (281)
T ss_dssp             CCC-SSCEEEEEESSSCEEEEET
T ss_pred             cCC-CcccccCcCCCCEEEEEeC
Confidence            222 2223479999999887543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.76  E-value=0.0036  Score=62.76  Aligned_cols=232  Identities=10%  Similarity=0.081  Sum_probs=122.0

Q ss_pred             eEEEEecCCC-eEEEEeCC-CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC------CeEEEEecCC
Q 005956          312 VLDLAWSNSN-YLLSCSMD-KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCE  381 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~D-g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~  381 (667)
                      ....++.+++ .++.|+.+ .++.+||..+..-...-.  ....-.+++..+ ++++++.|+.+      ..+.+||..+
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCC
Confidence            3456678888 55666554 589999998876543322  222233556666 88898888753      3689999988


Q ss_pred             CeEEEecccC---------------CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc-CcCCCCeEE
Q 005956          382 KRVVDWADVR---------------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITG  445 (667)
Q Consensus       382 ~~~~~~~~~~---------------~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~-~~~~~~I~~  445 (667)
                      .+-.......               ..-..+...++|+.++.+...+.+.+++..+.............. ......-.+
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  236 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence            7654322110               011122334577777777777777777777655433211111100 000111123


Q ss_pred             EEEccCCCeEEEEEeCCC--------cEEEEECCc---ceeeEEeC---CCCCCeEEEEEcCCCCEEEEEeCCC------
Q 005956          446 IQFSRDESQRIMITSEDS--------KLRILDGVD---VIHKFKGL---PKSGSQMSASFTTTGKHIISIGDDC------  505 (667)
Q Consensus       446 l~~sp~g~~~l~~~s~dg--------~I~iwd~~~---~~~~~~~~---~~~~~v~~v~~spdg~~l~sgs~Dg------  505 (667)
                      +.+...+.+.++.++...        ...+.+...   ........   .....-.+....+||+.++.|+.+.      
T Consensus       237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~  316 (387)
T d1k3ia3         237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  316 (387)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCC
Confidence            333332235666665321        333443321   11111111   1122223455668999999988531      


Q ss_pred             -----cEEEEEcCCCCccccccccC---ccceeEEccCCcEEEEecC
Q 005956          506 -----RVYVWNYDELCFPSSKQKNS---VRSCEHFFSEGVSVAVQWP  544 (667)
Q Consensus       506 -----~I~iWd~~~~~~~~~~~~~~---~~~~~~fs~dg~~lav~w~  544 (667)
                           .+.+||..+.+=........   --+.....+||+++++.-.
T Consensus       317 ~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         317 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence                 47889987664211111111   1123446789999988754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.30  E-value=0.014  Score=58.26  Aligned_cols=136  Identities=10%  Similarity=0.014  Sum_probs=84.3

Q ss_pred             cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC---------------eEEEE------------------
Q 005956          331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG---------------KVRIW------------------  377 (667)
Q Consensus       331 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg---------------~v~iw------------------  377 (667)
                      .+.++|..+.+....+.-......+.+++ +++++++.+.+.               .+.++                  
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            35677888888877776556667888999 888888876432               13333                  


Q ss_pred             -----ecCCC---eEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCccee-------eeEeeccccCcCCC
Q 005956          378 -----GVCEK---RVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKL-------EKVDFHDRKKTSGN  441 (667)
Q Consensus       378 -----dl~~~---~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~-------~~~~~~~~~~~~~~  441 (667)
                           |.+..   .+............+.++|||+++++++ .+.++.++|++......       ..+...   ...+-
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e---~elgl  329 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE---PELGL  329 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC---CBCCS
T ss_pred             CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee---cccCc
Confidence                 33321   1222233334466789999999988765 68899999997322111       011100   01122


Q ss_pred             CeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956          442 KITGIQFSRDESQRIMITSEDSKLRILDGV  471 (667)
Q Consensus       442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~  471 (667)
                      .-...+|...| .-..+---|.+|.-|++.
T Consensus       330 gPLht~fd~~g-~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         330 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             CccccccCCCc-eEEEEeeccceEEEEecc
Confidence            34556788875 555555689999999964

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.1  Score=48.99  Aligned_cols=203  Identities=8%  Similarity=-0.008  Sum_probs=124.1

Q ss_pred             eeccccceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956          305 LHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  381 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~  381 (667)
                      +..+...+.+|+|...+ .|+ +-..++.|+..++........+. ....+.++++....+++.++-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            34455568889998655 444 44567889988887665554443 3357889999874455555555678999999987


Q ss_pred             CeEEEec-ccCCceEEEEEeeCCCEEEEEecC-CcEEEE--EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          382 KRVVDWA-DVRDVISAICYIPDGKGFIVGSIT-GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       382 ~~~~~~~-~~~~~v~~v~~spdg~~l~~gs~d-g~i~l~--d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      ....... .....+..++++|...++...... +..+|+  ++.+...  ..+...+     ....+++++.+.+..+..
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--~~i~~~~-----~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILAQDN-----LGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEECTT-----CSCEEEEEEETTTTEEEE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--eeeeeec-----ccccceEEEeecCcEEEE
Confidence            6543332 223568899999977666654322 233444  4443322  1121111     245689999887645555


Q ss_pred             EEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956          458 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  517 (667)
Q Consensus       458 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~  517 (667)
                      +-...+.|...|+.......... ......++++.  +.+|+... ..+.|...|..+++.
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~v~~-~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EeCCCCEEEEEECCCCCeEEEEC-CCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCcc
Confidence            55677889999976432222111 22334677775  45565554 567788888877654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.16  Score=47.67  Aligned_cols=201  Identities=10%  Similarity=-0.014  Sum_probs=119.9

Q ss_pred             cccceEEEEecCCC-eEE-EEeCCCcEEEEecCCCe----EeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956          308 HKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQ----CLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  380 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~----~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~  380 (667)
                      ....+.++.|.+.. .|+ +-...+.|.-.++....    ...... ....+.++++.+..+++.++-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            34457788998755 444 43456667766664322    112222 334567888887456666665667889999998


Q ss_pred             CCeEEE-ecccCCceEEEEEeeCCCEEEEEe--cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956          381 EKRVVD-WADVRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  457 (667)
Q Consensus       381 ~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs--~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~  457 (667)
                      ...... .......+..++++|...++....  ..+.|.-.++......  .+...     .....+++++.+.+..+..
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~--~l~~~-----~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVTE-----NIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--EEECS-----SCSCEEEEEEETTTTEEEE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee--ccccc-----ccceeeEEEeeccccEEEE
Confidence            876543 333446688999999665655543  3345666666543322  11111     1245789999987655666


Q ss_pred             EEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCc
Q 005956          458 ITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCF  517 (667)
Q Consensus       458 ~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~  517 (667)
                      +-...+.|...|+.  ................++++.  +.+|+.+ ..++.|+..+..++..
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcc
Confidence            65677889988865  333333333333456677775  4455555 4567888888776653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.73  E-value=0.057  Score=53.80  Aligned_cols=201  Identities=14%  Similarity=0.150  Sum_probs=124.6

Q ss_pred             EEEecC---CC-eE-EEEeCCCcEEEEecCCCeEeEEe--eCCCcEEEEEEeeC-CCCEEEEEecC--------------
Q 005956          314 DLAWSN---SN-YL-LSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI-DDNYFISGSID--------------  371 (667)
Q Consensus       314 ~l~~s~---~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~-d~~~l~sgs~D--------------  371 (667)
                      .+++..   || +| +.-..+..|-+-|+.+.++.+..  .....+..+...+. +..|++.++.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455543   67 44 45557889999999999987755  45567777766541 45566666553              


Q ss_pred             ----CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC---------------cEEEEEecC-------Ccc
Q 005956          372 ----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYKASG-------NDL  425 (667)
Q Consensus       372 ----g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg---------------~i~l~d~~~-------~~~  425 (667)
                          +.+.++|..++++............+.++|+|+++++.+.+.               .+.+++...       ++.
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                236788999988876555566677899999999999877431               234444320       000


Q ss_pred             e-e---eeEeeccc-------cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeE----------Ee-CCCC
Q 005956          426 K-L---EKVDFHDR-------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF----------KG-LPKS  483 (667)
Q Consensus       426 ~-~---~~~~~~~~-------~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~----------~~-~~~~  483 (667)
                      . .   ..+.....       ...-......+.++|||...++++.-+.++.|+|..+....+          .+ ....
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg  328 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  328 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence            0 0   00000000       000013345789999986666666778999999976432111          11 1124


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956          484 GSQMSASFTTTGKHIISIGDDCRVYVWNYDE  514 (667)
Q Consensus       484 ~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~  514 (667)
                      -.....+|+..|.-..|---|..|.-|++..
T Consensus       329 lgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cCccccccCCCceEEEEeeccceEEEEecch
Confidence            4567789988885444455799999999854

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.43  Score=44.87  Aligned_cols=192  Identities=11%  Similarity=0.119  Sum_probs=118.8

Q ss_pred             ecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC-eEEEecc-----
Q 005956          317 WSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWAD-----  389 (667)
Q Consensus       317 ~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~-~~~~~~~-----  389 (667)
                      .+|.. .|+--+ ..++.|+|+++.+.++.+....+|.--.|-  +.+.|+..+ +..|+-|++... .+.+..+     
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L  145 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL  145 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEec--CCCEEEEEc-CCceEEEcccCCCCchhhhhhcccc
Confidence            35666 333333 568999999999999999988888888887  466666654 567999999653 2333222     


Q ss_pred             cCCceEEEEEeeCCCEEEEEe-------cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc--cCCCeEEEEE-
Q 005956          390 VRDVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMIT-  459 (667)
Q Consensus       390 ~~~~v~~v~~spdg~~l~~gs-------~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s--p~g~~~l~~~-  459 (667)
                      ....|..-..+++.++++..+       -.|.+.+|..+.+..+.    +.++    .+....+.+.  +.....++.+ 
T Consensus       146 ~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~  217 (327)
T d1utca2         146 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAV  217 (327)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE----ECCS----EEEEEEECCTTCSSCEEEEEEEE
T ss_pred             cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc----ccce----eeeeEEEEcCCCCCCceEEEEEE
Confidence            134577777788899887744       23678899887554332    1111    0111111111  1101122211 


Q ss_pred             --eCCCcEEEEECCcc---eeeE-----Ee----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956          460 --SEDSKLRILDGVDV---IHKF-----KG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  520 (667)
Q Consensus       460 --s~dg~I~iwd~~~~---~~~~-----~~----~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~  520 (667)
                        ...++++|.++...   ...+     ..    ........++.+|+.-..|+.-..-|.|++||++++.+...
T Consensus       218 r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         218 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             EETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence              23367888886421   1111     11    11245667888999889999999999999999999976443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.15  E-value=0.47  Score=46.27  Aligned_cols=231  Identities=9%  Similarity=0.002  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCEEEEEECC-CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956          226 WTLKFSPDGRYLASGGED-GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  304 (667)
Q Consensus       226 ~~v~fspdg~~Latgs~D-g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (667)
                      ...++.++|++++.|+.+ ..+.+||..+......                                           ..
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~-------------------------------------------~~  115 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-------------------------------------------PD  115 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-------------------------------------------CC
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCccccc-------------------------------------------cc
Confidence            356788999999998765 5899999886332111                                           00


Q ss_pred             eeccccceEEEEecCCC-eEEEEeCC------CcEEEEecCCCeEeEEee----------CC-----CcEEEEEEeeCCC
Q 005956          305 LHGHKGDVLDLAWSNSN-YLLSCSMD------KTVRMWQVGCNQCLNVFD----------HH-----NYVTCVQFNPIDD  362 (667)
Q Consensus       305 l~gh~~~V~~l~~s~~~-~l~s~s~D------g~I~iWd~~~~~~~~~~~----------h~-----~~V~~l~f~p~d~  362 (667)
                      +... ..-...+..+++ .++.++.+      ..+.+||..+.+-...-.          +.     ..-..+...+ ++
T Consensus       116 ~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G  193 (387)
T d1k3ia3         116 MQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KG  193 (387)
T ss_dssp             CSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GG
T ss_pred             cccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeC-CC
Confidence            0000 111234556677 56666542      368999998876433211          00     0001112223 67


Q ss_pred             CEEEEEecCCeEEEEecCCCeEEEecc---c----C--CceEEEEEe-eCCCEEEEEecCC--------cEEEEEecCCc
Q 005956          363 NYFISGSIDGKVRIWGVCEKRVVDWAD---V----R--DVISAICYI-PDGKGFIVGSITG--------TCHFYKASGND  424 (667)
Q Consensus       363 ~~l~sgs~Dg~v~iwdl~~~~~~~~~~---~----~--~~v~~v~~s-pdg~~l~~gs~dg--------~i~l~d~~~~~  424 (667)
                      +.++.+...+.+.+++..+........   .    .  ..-.++.+. .+++.+++|+...        ...++++....
T Consensus       194 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~  273 (387)
T d1k3ia3         194 SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG  273 (387)
T ss_dssp             CEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT
T ss_pred             CEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccc
Confidence            777777777778888887765432110   0    0  011222232 3566777776432        33444443322


Q ss_pred             ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-----------CcEEEEECCcceeeEEeCCCCCC--eEEEEE
Q 005956          425 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----------SKLRILDGVDVIHKFKGLPKSGS--QMSASF  491 (667)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-----------g~I~iwd~~~~~~~~~~~~~~~~--v~~v~~  491 (667)
                      ........... ......-.+....++| +++++|+.+           .++.+||.....-..........  -....+
T Consensus       274 ~~~~~~~~~~~-~p~~r~~~~~~~~~dg-~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l  351 (387)
T d1k3ia3         274 TSPNTVFASNG-LYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL  351 (387)
T ss_dssp             SCCEEEECTTC-CSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEE
T ss_pred             cCCCceeeccc-cccccccceeeeccCC-eEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEE
Confidence            22221111110 0111222345556775 677777643           15788986533211111101111  123446


Q ss_pred             cCCCCEEEEEeC
Q 005956          492 TTTGKHIISIGD  503 (667)
Q Consensus       492 spdg~~l~sgs~  503 (667)
                      .+||+.++.|+.
T Consensus       352 ~~dG~v~v~GG~  363 (387)
T d1k3ia3         352 LPDGRVFNGGGG  363 (387)
T ss_dssp             CTTSCEEEEECC
T ss_pred             CCCCEEEEEeCC
Confidence            799999999874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.08  E-value=0.59  Score=43.88  Aligned_cols=231  Identities=12%  Similarity=0.168  Sum_probs=139.3

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeec
Q 005956          228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG  307 (667)
Q Consensus       228 v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  307 (667)
                      .-.+|..+.||--+ ..++.|+|+++.                                             ..++.+. 
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK---------------------------------------------~klks~~-  100 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMK---------------------------------------------SKMKAHT-  100 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTT---------------------------------------------EEEEEEE-
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHh---------------------------------------------hhhceEE-
Confidence            34578888887766 458999999862                                             1122222 


Q ss_pred             cccceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEee-C----CCcEEEEEEeeCCCCEEEEEe-------cCCeE
Q 005956          308 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-H----HNYVTCVQFNPIDDNYFISGS-------IDGKV  374 (667)
Q Consensus       308 h~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~~-h----~~~V~~l~f~p~d~~~l~sgs-------~Dg~v  374 (667)
                      ...+|.--.|-.+..|+-.+. ..|+-|+++. ..+.+.|. |    ...|..-..++ +.+.++..+       -.|.+
T Consensus       101 ~~e~VvfWkWis~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~m  178 (327)
T d1utca2         101 MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAM  178 (327)
T ss_dssp             CSSCCCEEEESSSSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEE
T ss_pred             cCCCcEEEEecCCCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEE
Confidence            234677778877775555544 4799999954 35666664 2    34566777777 677665543       23678


Q ss_pred             EEEecCCCeEEEecccCCceEEEEEeeCC---CEEEEE---ecCCcEEEEEecCCcc---e--eeeEeeccccCcCCCCe
Q 005956          375 RIWGVCEKRVVDWADVRDVISAICYIPDG---KGFIVG---SITGTCHFYKASGNDL---K--LEKVDFHDRKKTSGNKI  443 (667)
Q Consensus       375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg---~~l~~g---s~dg~i~l~d~~~~~~---~--~~~~~~~~~~~~~~~~I  443 (667)
                      .+|..+.+....+.+|......+.+.-+.   +.++.+   ...+.+++.++.....   .  .+...+.-.....+.--
T Consensus       179 QLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFP  258 (327)
T d1utca2         179 QLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  258 (327)
T ss_dssp             EEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCE
T ss_pred             EEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcE
Confidence            89999887666555554333333221110   122222   2346889998865321   1  11222222222334556


Q ss_pred             EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956          444 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  508 (667)
Q Consensus       444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~  508 (667)
                      .+++.++. ...++.-+.-|.|++||+.+....|...-....|...+-..+..=|++...+|.|.
T Consensus       259 vamqvs~k-ygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         259 VAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEETT-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEeecc-CCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            67888776 36888899999999999998877777654556665444444444455555666654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.05  E-value=0.58  Score=48.93  Aligned_cols=51  Identities=8%  Similarity=-0.073  Sum_probs=38.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCc-EEEEecC
Q 005956          494 TGKHIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGV-SVAVQWP  544 (667)
Q Consensus       494 dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~-~lav~w~  544 (667)
                      .+.+|++|+.||.++.+|.++++........  ...+.+.|..||+ ++|+...
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence            4668888999999999999999987765433  3334467888885 7777554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.68  Score=42.98  Aligned_cols=182  Identities=8%  Similarity=-0.021  Sum_probs=108.8

Q ss_pred             CcEEEEecCCCeE------eEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-cCCceEEEEEeeC
Q 005956          330 KTVRMWQVGCNQC------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPD  402 (667)
Q Consensus       330 g~I~iWd~~~~~~------~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-~~~~v~~v~~spd  402 (667)
                      +.|+-.+++....      .....+...+.+++|.+.++.++.+-..++.|+..++.......+.. .-..+..+++..-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            4566666654321      11122444678899998444444444566889999988765544332 2356889999876


Q ss_pred             CCEEE-EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEECCcceeeEEe
Q 005956          403 GKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDGVDVIHKFKG  479 (667)
Q Consensus       403 g~~l~-~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~--I~iwd~~~~~~~~~~  479 (667)
                      +..|. +-...+.|.+.++.......  +...     .......+++.|..+.++.+-...+.  |.-.++.........
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~--l~~~-----~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~  162 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRV--LFDT-----GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA  162 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEE--EECS-----SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEE--Eecc-----cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee
Confidence            66555 44556789999987654322  1111     12567899999976444444333233  444454422111112


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcc
Q 005956          480 LPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFP  518 (667)
Q Consensus       480 ~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~~  518 (667)
                      .........+++.+.++.|+.+ ...+.|...+++.....
T Consensus       163 ~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~  202 (263)
T d1npea_         163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR  202 (263)
T ss_dssp             CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE
T ss_pred             eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE
Confidence            2244567899999888888666 45678999998876543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.72  E-value=1.2  Score=44.45  Aligned_cols=204  Identities=10%  Similarity=0.061  Sum_probs=105.7

Q ss_pred             cccceEEEEecCCC-eEE-EEeCCC----cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC----------
Q 005956          308 HKGDVLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID----------  371 (667)
Q Consensus       308 h~~~V~~l~~s~~~-~l~-s~s~Dg----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D----------  371 (667)
                      +.-.+..++++|++ +++ +-+.+|    +|+++|+.+++.+...-.......+.|.+ ++..|+....+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence            33445567789999 444 444444    79999999998765332112224678999 77777655432          


Q ss_pred             ------CeEEEEecCCCe---EEEecc--cCCceEEEEEeeCCCEEEEEec---CCcEEEE--EecCCcceee----eEe
Q 005956          372 ------GKVRIWGVCEKR---VVDWAD--VRDVISAICYIPDGKGFIVGSI---TGTCHFY--KASGNDLKLE----KVD  431 (667)
Q Consensus       372 ------g~v~iwdl~~~~---~~~~~~--~~~~v~~v~~spdg~~l~~gs~---dg~i~l~--d~~~~~~~~~----~~~  431 (667)
                            ..|..+.+.+..   .+....  ....+..+..++++++++....   ++...+|  |+........    ...
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  257788776643   122222  2334667778899998876443   2333444  4443221110    001


Q ss_pred             eccccCcCCCCeEEEEEccCCCeEEEEEeC---CCcEEEEECCccee---eEEeCCCCCCeEEEEEcCCCCEEEEE-eCC
Q 005956          432 FHDRKKTSGNKITGIQFSRDESQRIMITSE---DSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISI-GDD  504 (667)
Q Consensus       432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~---dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~spdg~~l~sg-s~D  504 (667)
                      +..   .....+.-+. +.+ ..+++.+..   ++.|...++.+...   ..-...+...+..-.++..+.+|+.. -.+
T Consensus       282 ~~~---~~~~~~~~~~-~~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~  356 (430)
T d1qfma1         282 LID---NFEGEYDYVT-NEG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (430)
T ss_dssp             EEC---SSSSCEEEEE-EET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             eec---ccccceEEEe-cCC-ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcC
Confidence            100   0012222222 222 245555543   35666666653221   11112234445444444455566655 455


Q ss_pred             C--cEEEEEcCCCCc
Q 005956          505 C--RVYVWNYDELCF  517 (667)
Q Consensus       505 g--~I~iWd~~~~~~  517 (667)
                      +  .|+++++.++..
T Consensus       357 ~~~~l~v~~~~~~~~  371 (430)
T d1qfma1         357 VKNTLQLHDLATGAL  371 (430)
T ss_dssp             TEEEEEEEETTTCCE
T ss_pred             CEeEEEEEECCCCcE
Confidence            4  588899887653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.71  E-value=1  Score=43.55  Aligned_cols=136  Identities=15%  Similarity=0.106  Sum_probs=76.8

Q ss_pred             cCCC--eEEEEe---CCCcEEEEecCCCe--Ee--EEee--CCCcEEEEEEeeCCCCEEEEEec---------------C
Q 005956          318 SNSN--YLLSCS---MDKTVRMWQVGCNQ--CL--NVFD--HHNYVTCVQFNPIDDNYFISGSI---------------D  371 (667)
Q Consensus       318 s~~~--~l~s~s---~Dg~I~iWd~~~~~--~~--~~~~--h~~~V~~l~f~p~d~~~l~sgs~---------------D  371 (667)
                      .+++  +|+...   ...+|.+|++....  ..  ..+.  .......+++.. ++.++++-..               -
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~  185 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGL  185 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcC
Confidence            3455  555553   45678888875332  22  2222  234578888888 7777776311               1


Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  450 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp  450 (667)
                      ++..+|....+........-...+.++++||+++|+++. ..+.|+.|++.............     -....-.+.+.+
T Consensus       186 ~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-----l~~~pDNi~~d~  260 (340)
T d1v04a_         186 AWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-----FDTLVDNISVDP  260 (340)
T ss_dssp             CCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-----CSSEEEEEEECT
T ss_pred             CceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-----CCCCCCccEEec
Confidence            233444444444433334445689999999998877654 57789999997654322211111     124566777765


Q ss_pred             CCCeEEEEE
Q 005956          451 DESQRIMIT  459 (667)
Q Consensus       451 ~g~~~l~~~  459 (667)
                      .++.+.+++
T Consensus       261 ~~g~lwva~  269 (340)
T d1v04a_         261 VTGDLWVGC  269 (340)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCEEEEEE
Confidence            433444443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.68  E-value=1.2  Score=44.36  Aligned_cols=245  Identities=12%  Similarity=0.067  Sum_probs=121.0

Q ss_pred             cccccEEEEEEcCCCCEEEEEE-----CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956          220 AHKGCIWTLKFSPDGRYLASGG-----EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  294 (667)
Q Consensus       220 ~H~~~I~~v~fspdg~~Latgs-----~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (667)
                      ++.-.+...++|||+++||-+-     +-..|++.|+.++....                                    
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~------------------------------------  165 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP------------------------------------  165 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE------------------------------------
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc------------------------------------
Confidence            4444456678899999888542     23478999998753211                                    


Q ss_pred             ccccCCcceeeeccccceEEEEecCCC-eEEEEeCC----------------CcEEEEecCCCeE--eEEee---CCCcE
Q 005956          295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD----------------KTVRMWQVGCNQC--LNVFD---HHNYV  352 (667)
Q Consensus       295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D----------------g~I~iWd~~~~~~--~~~~~---h~~~V  352 (667)
                              ..+.  ......++|.+++ .|+....|                ..|..|.+.+...  ...+.   ....+
T Consensus       166 --------~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~  235 (430)
T d1qfma1         166 --------DVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM  235 (430)
T ss_dssp             --------EEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             --------cccc--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceE
Confidence                    0111  1112457899888 45443322                2577888877533  33443   22356


Q ss_pred             EEEEEeeCCCCEEEEEec---CCe--EEEEecCCCe--------EEEec-ccCCceEEEEEeeCCCEEEEEe----cCCc
Q 005956          353 TCVQFNPIDDNYFISGSI---DGK--VRIWGVCEKR--------VVDWA-DVRDVISAICYIPDGKGFIVGS----ITGT  414 (667)
Q Consensus       353 ~~l~f~p~d~~~l~sgs~---Dg~--v~iwdl~~~~--------~~~~~-~~~~~v~~v~~spdg~~l~~gs----~dg~  414 (667)
                      ..+..++ ++++++....   +..  +.+.|+....        ..... ........ .-+ +|..+..-+    .++.
T Consensus       236 ~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~Tn~~a~~~~  312 (430)
T d1qfma1         236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN-EGTVFTFKTNRHSPNYR  312 (430)
T ss_dssp             EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE-ETTEEEEEECTTCTTCE
T ss_pred             EeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEE-Eec-CCceeecccCcccccce
Confidence            6777777 8888765432   233  4444544321        11111 11222222 222 334444333    2355


Q ss_pred             EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEEEc
Q 005956          415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFT  492 (667)
Q Consensus       415 i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  492 (667)
                      |...++..........-+..    +...+..-.+...+..+++....++  .|++++..............+.+..+...
T Consensus       313 L~~~~~~~~~~~~w~~vi~~----~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~  388 (430)
T d1qfma1         313 LINIDFTDPEESKWKVLVPE----HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQ  388 (430)
T ss_dssp             EEEEETTBCCGGGCEEEECC----CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECC
T ss_pred             eEEecCCCCccccceEEecc----cCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCC
Confidence            66666654332211111111    1123333233322223444444554  58888876433332233344555555555


Q ss_pred             CCCCEEEEEeC----CCcEEEEEcCCCCc
Q 005956          493 TTGKHIISIGD----DCRVYVWNYDELCF  517 (667)
Q Consensus       493 pdg~~l~sgs~----Dg~I~iWd~~~~~~  517 (667)
                      ++...+...-.    -.+++-+|+.+++.
T Consensus       389 ~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         389 KKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             TTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            55554433322    26788899888754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.44  E-value=1.9  Score=45.00  Aligned_cols=81  Identities=10%  Similarity=0.049  Sum_probs=49.6

Q ss_pred             cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCc-EEE
Q 005956          464 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGV-SVA  540 (667)
Q Consensus       464 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~-~la  540 (667)
                      .|.-||..+.....+.. +.....+-.++..|.+|+.|+.||.++.+|.++++........  ....-+.|..||+ ++|
T Consensus       454 ~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         454 QIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             eEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence            45555655444333321 1111122222335778888999999999999999998765433  3344467788885 777


Q ss_pred             EecCC
Q 005956          541 VQWPG  545 (667)
Q Consensus       541 v~w~~  545 (667)
                      +....
T Consensus       533 v~~G~  537 (596)
T d1w6sa_         533 IYYGV  537 (596)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            75443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=1.9  Score=39.74  Aligned_cols=155  Identities=9%  Similarity=-0.020  Sum_probs=94.5

Q ss_pred             cceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe-cCCeEEEEecCCCeEE
Q 005956          310 GDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVV  385 (667)
Q Consensus       310 ~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs-~Dg~v~iwdl~~~~~~  385 (667)
                      ..+..|++...+  ...+-...+.|.+.++.......... .......++++|..+.++.+-. ..+.|.-.++......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            345566665433  55566677899999998776555444 4567899999994444444432 3356777788766554


Q ss_pred             Eec-ccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956          386 DWA-DVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  463 (667)
Q Consensus       386 ~~~-~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg  463 (667)
                      .+. ..-..++.+++.+.++.|..+ ...+.|...++.+...... ....    .......++++..+  .++.+-..++
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~-~~~~----~~~~~p~~lav~~~--~ly~td~~~~  229 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-LEDE----KRLAHPFSLAVFED--KVFWTDIINE  229 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-EECT----TTTSSEEEEEEETT--EEEEEETTTT
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEE-EeCC----CcccccEEEEEECC--EEEEEECCCC
Confidence            433 233567899999987766665 5567888888876543221 1111    11133456776642  4445545667


Q ss_pred             cEEEEECC
Q 005956          464 KLRILDGV  471 (667)
Q Consensus       464 ~I~iwd~~  471 (667)
                      .|...+..
T Consensus       230 ~I~~~~~~  237 (266)
T d1ijqa1         230 AIFSANRL  237 (266)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEECC
Confidence            77777644

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.62  E-value=0.84  Score=44.16  Aligned_cols=183  Identities=10%  Similarity=0.051  Sum_probs=99.9

Q ss_pred             eEEEEecCCC-eEEEEeC------------CCcEEEEecCCCeEeE-Ee---eC-----CCcEEEEEEeeC-CCC-EEEE
Q 005956          312 VLDLAWSNSN-YLLSCSM------------DKTVRMWQVGCNQCLN-VF---DH-----HNYVTCVQFNPI-DDN-YFIS  367 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~------------Dg~I~iWd~~~~~~~~-~~---~h-----~~~V~~l~f~p~-d~~-~l~s  367 (667)
                      .-+|...|+| .+++++.            .|.|.++|+.+..... .+   ..     .-....+..... ++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            4567778888 4444432            3889999987653221 11   11     113455555331 343 3444


Q ss_pred             Ee---cCCeEEEEecCCC--eEEEe----cccCCceEEEEEeeCCCEEEEEec---------------CCcEEEEEecCC
Q 005956          368 GS---IDGKVRIWGVCEK--RVVDW----ADVRDVISAICYIPDGKGFIVGSI---------------TGTCHFYKASGN  423 (667)
Q Consensus       368 gs---~Dg~v~iwdl~~~--~~~~~----~~~~~~v~~v~~spdg~~l~~gs~---------------dg~i~l~d~~~~  423 (667)
                      ..   ...+|.+|++...  ++...    ......++.+++..+|..+++-..               -+...+|.....
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   3467888887532  22221    122345789999999987777321               123344444443


Q ss_pred             cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956          424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      .....   ..+     ....+.|+++|++..++++-+..++|++|++...  ........-....-.+.+.+.+..+.++
T Consensus       197 ~~~~~---~~~-----l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         197 DVRVV---AEG-----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             CEEEE---EEE-----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             ceEEE---cCC-----CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            33211   111     1457899999997666677778889999986521  1111111134456677776543333344


Q ss_pred             e
Q 005956          502 G  502 (667)
Q Consensus       502 s  502 (667)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.28  E-value=0.85  Score=47.61  Aligned_cols=84  Identities=8%  Similarity=-0.031  Sum_probs=51.4

Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      |.|.-+|+.+++++-.........+-.+.-.+..+++|+.||.++-||.++++...+ ..+...     ..-.-+.|..+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~-~~l~~~-----~~a~P~ty~~d  517 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN-FKMPSG-----GIGSPMTYSFK  517 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSSC-----CCSCCEEEEET
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEE-EECCCC-----ceecceEEEEC
Confidence            457778888888764333222222212233566888899999999999999887654 222211     11223555667


Q ss_pred             CCeEEEEEeC
Q 005956          452 ESQRIMITSE  461 (667)
Q Consensus       452 g~~~l~~~s~  461 (667)
                      |.++|++...
T Consensus       518 GkqYi~v~~g  527 (571)
T d2ad6a1         518 GKQYIGSMYG  527 (571)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            8778766554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.27  E-value=1.4  Score=45.81  Aligned_cols=86  Identities=13%  Similarity=0.158  Sum_probs=55.1

Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      |.|.-||+.+++++-..........-.+.-.|.++++|+.||.++-||..+++...+ ..+..  .....+   +.|..+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~-~~l~~--~~~~~P---~ty~~d  511 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ-FEAQS--GIVAAP---MTFELA  511 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEET
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE-EECCC--CccccC---EEEEEC
Confidence            467888999998875444433333333445677888999999999999999988654 22221  111222   455567


Q ss_pred             CCeEEEEEeCCC
Q 005956          452 ESQRIMITSEDS  463 (667)
Q Consensus       452 g~~~l~~~s~dg  463 (667)
                      |.++|++.+..|
T Consensus       512 Gkqyv~v~aG~g  523 (560)
T d1kv9a2         512 GRQYVAIMAGWG  523 (560)
T ss_dssp             TEEEEEEEECCC
T ss_pred             CEEEEEEEeCCC
Confidence            767777665544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.13  E-value=5.5  Score=39.65  Aligned_cols=111  Identities=12%  Similarity=0.126  Sum_probs=63.9

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec---------ccCCceEEEEEeeC---CCEEEEEec----
Q 005956          348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA---------DVRDVISAICYIPD---GKGFIVGSI----  411 (667)
Q Consensus       348 h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~---------~~~~~v~~v~~spd---g~~l~~gs~----  411 (667)
                      .-...++|+|.| ++++|++--..|+|++++..++......         ........|+++|+   ..++.+...    
T Consensus        25 ~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~  103 (450)
T d1crua_          25 NLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (450)
T ss_dssp             CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCC
Confidence            345778999999 8888877545799999998887654322         12345788999995   334444221    


Q ss_pred             ---C------CcEEEEEecCCcceee--eEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956          412 ---T------GTCHFYKASGNDLKLE--KVDFHDRKKTSGNKITGIQFSRDESQRIMITS  460 (667)
Q Consensus       412 ---d------g~i~l~d~~~~~~~~~--~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s  460 (667)
                         +      ..+..+..........  ...+.............|.|.||| .++++.+
T Consensus       104 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG-~LYvs~G  162 (450)
T d1crua_         104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (450)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCC-CEEEEec
Confidence               0      1244444444333222  111111112223456789999997 4444444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.12  E-value=3.6  Score=36.18  Aligned_cols=152  Identities=9%  Similarity=0.119  Sum_probs=87.3

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee--C--------CCcEEEEEEeeCCCCEEEEEec-CCeEEEEe
Q 005956          310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--H--------HNYVTCVQFNPIDDNYFISGSI-DGKVRIWG  378 (667)
Q Consensus       310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--h--------~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwd  378 (667)
                      -.|.++++......++|+......+|-++.|+..+...  .        .+.|..+.|...+..-|+++.. .|.++|++
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            45777777666688888888889999999887655432  2        2344444443312233444443 44555554


Q ss_pred             cCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-C--cEEEEEecCCcceeeeEeeccc--cCcCCCCeEEEEEccCCC
Q 005956          379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDR--KKTSGNKITGIQFSRDES  453 (667)
Q Consensus       379 l~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g--~i~l~d~~~~~~~~~~~~~~~~--~~~~~~~I~~l~~sp~g~  453 (667)
                                ...+.++...+.++.+. +++... |  ...-+|+++++...  +.+...  ..-....|+-+-+.|++ 
T Consensus       184 ----------pkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yer--ve~P~kd~~sy~p~~I~~~~Y~Pdd-  249 (313)
T d2hu7a1         184 ----------SGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVED--LELPSKDFSSYRPTAITWLGYLPDG-  249 (313)
T ss_dssp             ----------CSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEE--CCCSSCHHHHHCCSEEEEEEECTTS-
T ss_pred             ----------CCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceee--eecCcccceeecceEEEeeeeCCCC-
Confidence                      44455555566665443 443322 2  22244666555432  222221  11123456777799996 


Q ss_pred             eEEEEEeCCCcEEEEECCccee
Q 005956          454 QRIMITSEDSKLRILDGVDVIH  475 (667)
Q Consensus       454 ~~l~~~s~dg~I~iwd~~~~~~  475 (667)
                      ++++++-.||.-++|.-.+.+.
T Consensus       250 ~L~iiakrdG~s~lF~nGk~in  271 (313)
T d2hu7a1         250 RLAVVARREGRSAVFIDGERVE  271 (313)
T ss_dssp             CEEEEEEETTEEEEEETTEEEC
T ss_pred             cEEEEEecCCchheeecceEec
Confidence            7779999999999998655443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.84  E-value=0.76  Score=48.13  Aligned_cols=80  Identities=14%  Similarity=0.087  Sum_probs=56.9

Q ss_pred             CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCce--EEEEEeeCCC-E
Q 005956          329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI--SAICYIPDGK-G  405 (667)
Q Consensus       329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v--~~v~~spdg~-~  405 (667)
                      .|.|.-+|+.+++.+..+....++..-.... .+.+++.|+.||.++.+|..+++.+-.......+  .-+.|..+|+ +
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678889999999998887544444323334 6778888999999999999999988544433322  2367778886 4


Q ss_pred             EEEE
Q 005956          406 FIVG  409 (667)
Q Consensus       406 l~~g  409 (667)
                      +++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.66  E-value=0.87  Score=47.54  Aligned_cols=84  Identities=11%  Similarity=0.088  Sum_probs=52.4

Q ss_pred             eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956          373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  452 (667)
Q Consensus       373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g  452 (667)
                      .+.-||+.+++++-..........-..+-.|..+++|+.||.++.||.++++...+ ..+..  .....+   +.|..+|
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~-~~~~~--~~~~~P---~ty~~~G  531 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE-APTGT--GVVAAP---STYMVDG  531 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEETT
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE-EECCC--CccccC---EEEEECC
Confidence            57778888888764333333322223345678888999999999999999988654 22221  112233   4455577


Q ss_pred             CeEEEEEeCC
Q 005956          453 SQRIMITSED  462 (667)
Q Consensus       453 ~~~l~~~s~d  462 (667)
                      .++|++.+.-
T Consensus       532 kQYv~v~~G~  541 (573)
T d1kb0a2         532 RQYVSVAVGW  541 (573)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEeCC
Confidence            6777766543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.42  E-value=6.4  Score=37.68  Aligned_cols=187  Identities=11%  Similarity=0.181  Sum_probs=106.1

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEee---CCC--CEEEEEecC----CeEEEEecCC--CeEEEeccc
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP---IDD--NYFISGSID----GKVRIWGVCE--KRVVDWADV  390 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p---~d~--~~l~sgs~D----g~v~iwdl~~--~~~~~~~~~  390 (667)
                      +++....++-|.+||+. |+.+..+. .+.+..+..-.   .++  .-++.++..    .+|.+|.+..  ..+..+...
T Consensus        42 lI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~  119 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP  119 (353)
T ss_dssp             EEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred             EEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence            66666677779999996 77666653 33444444331   012  234555532    3577887653  333322221


Q ss_pred             -------CCceEEEEE--eeC-CC-EEEEEecCCcEEEEEecCCc---ceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956          391 -------RDVISAICY--IPD-GK-GFIVGSITGTCHFYKASGND---LKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  456 (667)
Q Consensus       391 -------~~~v~~v~~--spd-g~-~l~~gs~dg~i~l~d~~~~~---~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l  456 (667)
                             ...+..+|+  ++. |. ++++...+|.+..|.+....   .....+...    .....+.++.+.+.. ..|
T Consensus       120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f----~~~~q~EGCVvDde~-~~L  194 (353)
T d1h6la_         120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF----KMNSQTEGMAADDEY-GSL  194 (353)
T ss_dssp             SSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE----ECSSCEEEEEEETTT-TEE
T ss_pred             ccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc----CCCCccceEEEeCCC-CcE
Confidence                   224677777  553 54 45666778999888874322   222221111    113578899998874 788


Q ss_pred             EEEeCCCcEEEEECC----cceeeE-E--eCCCCCCeEEEEE--cCCCC-EEEEEe-CCCcEEEEEcCCC
Q 005956          457 MITSEDSKLRILDGV----DVIHKF-K--GLPKSGSQMSASF--TTTGK-HIISIG-DDCRVYVWNYDEL  515 (667)
Q Consensus       457 ~~~s~dg~I~iwd~~----~~~~~~-~--~~~~~~~v~~v~~--spdg~-~l~sgs-~Dg~I~iWd~~~~  515 (667)
                      +++-++.-|+.++..    ...... .  +.....-+-.+++  ..++. ||++.+ .+++..|||..+.
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            888888777777643    111111 1  1112445666665  33433 555544 5688999999875

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.41  E-value=6.4  Score=37.67  Aligned_cols=141  Identities=10%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             cEEEEecCC-CeEeEEee--------CCCcEEEEEE--eeCCCC-EEEEEecCCeEEEEecC---CC----eEEEecccC
Q 005956          331 TVRMWQVGC-NQCLNVFD--------HHNYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC---EK----RVVDWADVR  391 (667)
Q Consensus       331 ~I~iWd~~~-~~~~~~~~--------h~~~V~~l~f--~p~d~~-~l~sgs~Dg~v~iwdl~---~~----~~~~~~~~~  391 (667)
                      +|.+|.+.. ...+..+.        ....+..+++  ++.++. +++....+|.+..|.+.   .+    +.++.....
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            677887752 23333332        1123556666  564454 56667778999888763   22    233445566


Q ss_pred             CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc--CCC-eEEEEEeCCCcEEEE
Q 005956          392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DES-QRIMITSEDSKLRIL  468 (667)
Q Consensus       392 ~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp--~g~-~~l~~~s~dg~I~iw  468 (667)
                      ..+..+.+.+....|.++-.+.-+..|++.........+............+-.|+.-.  ++. .+|++.-.+++..||
T Consensus       180 ~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vy  259 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIY  259 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEE
Confidence            78899999999899999988877766666533222221111110111235677777643  333 444444567889999


Q ss_pred             ECC
Q 005956          469 DGV  471 (667)
Q Consensus       469 d~~  471 (667)
                      |..
T Consensus       260 dr~  262 (353)
T d1h6la_         260 ERQ  262 (353)
T ss_dssp             ESS
T ss_pred             ecC
Confidence            964

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.38  E-value=1.9  Score=44.59  Aligned_cols=80  Identities=8%  Similarity=0.080  Sum_probs=56.2

Q ss_pred             CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceE--EEEEeeCCC-EE
Q 005956          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS--AICYIPDGK-GF  406 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~--~v~~spdg~-~l  406 (667)
                      |.|.-||+.+++.+..+....+...-...- .+.+++.|+.||.++.+|..+++.+-.......+.  -+.|..+|+ +|
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578889999999998887554444333333 57788899999999999999999885444333322  356667886 44


Q ss_pred             EEEe
Q 005956          407 IVGS  410 (667)
Q Consensus       407 ~~gs  410 (667)
                      ++..
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.50  E-value=1.1  Score=47.08  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=52.9

Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      |.|.-||+.+++++-.......+..-.++-.|..+++|+.||.++.||.++++...+ ..+..  .....+   +.|.-+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~-~~~~~--~~~a~P---~tY~~d  526 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK-FKIPS--GAIGYP---MTYTHK  526 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEET
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeE-EECCC--CcccCC---eEEEEC
Confidence            467788888888764333333333223345677888899999999999999988654 22221  112233   445557


Q ss_pred             CCeEEEEEeC
Q 005956          452 ESQRIMITSE  461 (667)
Q Consensus       452 g~~~l~~~s~  461 (667)
                      |.++|++...
T Consensus       527 GkQYvav~~G  536 (596)
T d1w6sa_         527 GTQYVAIYYG  536 (596)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            7777776554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.40  E-value=9.3  Score=37.83  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=27.6

Q ss_pred             ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 005956          221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA  255 (667)
Q Consensus       221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~  255 (667)
                      .-..-++|+|.|||++|++--..|.|++++..++.
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence            34567899999999998887667999888776543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.23  E-value=3.4  Score=42.80  Aligned_cols=83  Identities=16%  Similarity=0.103  Sum_probs=53.8

Q ss_pred             CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956          372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  451 (667)
Q Consensus       372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~  451 (667)
                      |.|.-+|+.++++.-......++..-.++..|..+++|+.||.++-||..+++...+ ..+..  ..+..+   +.|..+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~-~~~~~--~~~~~P---~ty~~~  539 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGS--GIVSPP---ITWEQD  539 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEET
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE-EECCC--CccccC---EEEEEC
Confidence            567788888888775433333333323445677888899999999999999988654 22221  112223   566678


Q ss_pred             CCeEEEEEe
Q 005956          452 ESQRIMITS  460 (667)
Q Consensus       452 g~~~l~~~s  460 (667)
                      |.++|++..
T Consensus       540 G~qYv~i~a  548 (582)
T d1flga_         540 GEQYLGVTV  548 (582)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            777777654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.83  E-value=13  Score=35.90  Aligned_cols=94  Identities=10%  Similarity=0.003  Sum_probs=60.5

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe--
Q 005956          311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--  387 (667)
Q Consensus       311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~--  387 (667)
                      .|..++|+.+. |+.. .++.+..+++..-...... ....++..+.++|   ..++....++.+.++++..++....  
T Consensus        88 ~v~~vafs~d~-l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGDQ-VLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETTE-EEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCCE-EEEE-eCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence            58889997554 3333 4456777877654333222 3456788888876   4667777899999999988764332  


Q ss_pred             ----cccCCceEEEEEeeCCCEEEEE
Q 005956          388 ----ADVRDVISAICYIPDGKGFIVG  409 (667)
Q Consensus       388 ----~~~~~~v~~v~~spdg~~l~~g  409 (667)
                          ......+.+++|++.|+.++++
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEe
Confidence                1223556677777766666665

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.98  E-value=10  Score=33.12  Aligned_cols=208  Identities=13%  Similarity=0.089  Sum_probs=111.1

Q ss_pred             eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC-CCCEEEEE------ecCCeEEEEecCC-CeEEEecccC-C
Q 005956          322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-DDNYFISG------SIDGKVRIWGVCE-KRVVDWADVR-D  392 (667)
Q Consensus       322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~-d~~~l~sg------s~Dg~v~iwdl~~-~~~~~~~~~~-~  392 (667)
                      .|+.+...|.+.++-+..++.++..+.  +|... -.|. .-.++..+      -.-..|++-++.. ++-.+....+ -
T Consensus        28 ll~~~~seG~vni~~l~g~~~vkLtke--PI~~~-~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~v  104 (313)
T d2hu7a1          28 LLVVGFSEGSVNAYLYDGGETVKLNRE--PINSV-LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPM  104 (313)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEECCSS--CCSEE-CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSB
T ss_pred             EEEEEeccceEEEEEEeCCEEEEEecc--cccCc-CCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceE
Confidence            777887889999998887776655431  22111 1110 11111111      1112355555542 3333333333 4


Q ss_pred             ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc---cCcCCCCeEEEEEccCCCeEEEEEeC-CCcEEEE
Q 005956          393 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTSGNKITGIQFSRDESQRIMITSE-DSKLRIL  468 (667)
Q Consensus       393 ~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~---~~~~~~~I~~l~~sp~g~~~l~~~s~-dg~I~iw  468 (667)
                      .|.++++. +.+.+.+|+......+|-+.++++... ..+.+-   .......|..+.+-..+..-++++.- .|.++|+
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL-~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLREL-ARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEE-EEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeee-ccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            46666653 445677888888899999998876532 111110   01123456666665544555666665 7778777


Q ss_pred             ECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCCcccc-c-------cccCccceeEEccCC
Q 005956          469 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG----DDCRVYVWNYDELCFPSS-K-------QKNSVRSCEHFFSEG  536 (667)
Q Consensus       469 d~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs----~Dg~I~iWd~~~~~~~~~-~-------~~~~~~~~~~fs~dg  536 (667)
                      +.           ..+.++.....+..+. +++-    +.--| -+|+.++..... .       -....++.+-+.||+
T Consensus       183 tp-----------keGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd  249 (313)
T d2hu7a1         183 DS-----------GEGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG  249 (313)
T ss_dssp             CC-----------SSEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTS
T ss_pred             cC-----------CCCcccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCC
Confidence            64           3445666666666655 4332    22233 347765543211 1       122334456789999


Q ss_pred             cEEEEecCCCC
Q 005956          537 VSVAVQWPGIG  547 (667)
Q Consensus       537 ~~lav~w~~~~  547 (667)
                      ..+.++-....
T Consensus       250 ~L~iiakrdG~  260 (313)
T d2hu7a1         250 RLAVVARREGR  260 (313)
T ss_dssp             CEEEEEEETTE
T ss_pred             cEEEEEecCCc
Confidence            98777655443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=85.46  E-value=1.6  Score=45.47  Aligned_cols=78  Identities=15%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEE--EEEeeCCCE-E
Q 005956          330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA--ICYIPDGKG-F  406 (667)
Q Consensus       330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~--v~~spdg~~-l  406 (667)
                      |.|.-||+.+++.+..+.+..+...-...- .+.++++|+.|+.++.+|..+++.+-.......+.+  +.|..+|+. |
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578899999999998887544433222333 678888999999999999999998854443333222  566678864 4


Q ss_pred             EE
Q 005956          407 IV  408 (667)
Q Consensus       407 ~~  408 (667)
                      ++
T Consensus       536 ~v  537 (573)
T d1kb0a2         536 SV  537 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.51  E-value=22  Score=34.06  Aligned_cols=177  Identities=8%  Similarity=-0.019  Sum_probs=94.3

Q ss_pred             eEEEEecCCC-eEEEEeCCCcEEEEecC-----------CCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956          312 VLDLAWSNSN-YLLSCSMDKTVRMWQVG-----------CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  379 (667)
Q Consensus       312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~-----------~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl  379 (667)
                      ..-|+.++.. +++.|+.++ ++|-.+.           ........ .-..|..++|+-   +.++.. .++.+..++.
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~-~ip~v~~vafs~---d~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPDVIFVCFHG---DQVLVS-TRNALYSLDL  112 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTTEEEEEEET---TEEEEE-ESSEEEEEES
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc-CCCCeEEEEeeC---CEEEEE-eCCCEEEEEe
Confidence            4556666654 888888775 5666531           11111111 223688899964   344444 4567888877


Q ss_pred             CCCe-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956          380 CEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  458 (667)
Q Consensus       380 ~~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~  458 (667)
                      ..-. ..........+..+.++|  ..+++...+|.+.++++..............  ..-...+.+++|++.| ..+++
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~--~~~~~~~~~v~ws~kg-kq~v~  187 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTS--FDVTNSQLAVLLKDRS-FQSFA  187 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEE--EEECSSEEEEEETTSC-EEEEE
T ss_pred             eccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcce--EEecCCceEEEEeCCc-EEEEE
Confidence            6532 222333445677777666  4677788899999999987654321110000  0012567888888765 55665


Q ss_pred             EeCCCcEEEE-ECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEE
Q 005956          459 TSEDSKLRIL-DGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISI  501 (667)
Q Consensus       459 ~s~dg~I~iw-d~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sg  501 (667)
                      +..++ ..+- ++..... +.. ......+.++.|-.+..++++-
T Consensus       188 ~~g~~-~q~k~~i~~~~~-~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGE-MEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTE-EEEEEEECCCHH-HHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCc-eeeccCCCCccc-cCCCcCCCcceeEEEEecCceEEEEE
Confidence            53322 2221 1111000 000 0123467788887666665543