Citrus Sinensis ID: 005960
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | 2.2.26 [Sep-21-2011] | |||||||
| Q9I869 | 651 | Kinesin-like protein KIF2 | N/A | no | 0.500 | 0.513 | 0.422 | 7e-71 | |
| Q7ZYL5 | 650 | Kinesin-like protein KIF2 | N/A | no | 0.862 | 0.884 | 0.322 | 1e-70 | |
| Q6P3R1 | 639 | Kinesin-like protein KIF2 | yes | no | 0.497 | 0.519 | 0.418 | 2e-70 | |
| Q3V300 | 660 | Kinesin-like protein KIF2 | yes | no | 0.470 | 0.475 | 0.404 | 2e-69 | |
| A6QPL4 | 662 | Kinesin-like protein KIF2 | yes | no | 0.490 | 0.493 | 0.398 | 2e-67 | |
| Q5I0E8 | 657 | Kinesin-like protein KIF2 | yes | no | 0.496 | 0.503 | 0.387 | 9e-67 | |
| Q14807 | 665 | Kinesin-like protein KIF2 | yes | no | 0.470 | 0.472 | 0.404 | 6e-66 | |
| Q5REP4 | 665 | Kinesin-like protein KIF2 | yes | no | 0.470 | 0.472 | 0.401 | 2e-65 | |
| A8WFU8 | 634 | Kinesin-like protein KIF2 | yes | no | 0.479 | 0.504 | 0.405 | 2e-63 | |
| P33174 | 1231 | Chromosome-associated kin | no | no | 0.479 | 0.259 | 0.353 | 1e-49 |
| >sp|Q9I869|KF22A_XENLA Kinesin-like protein KIF22-A OS=Xenopus laevis GN=kif22-a PE=1 SV=1 | Back alignment and function desciption |
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Score = 268 bits (686), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 150/355 (42%), Positives = 222/355 (62%), Gaps = 21/355 (5%)
Query: 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECY 82
S+ ++VRV VR+RP++ ++ AK + C+ LD SL E+ + +T++ Y
Sbjct: 27 SSCARVRVAVRLRPYMDEKDEAKA--TTVCVRGLDSQSL----EIVNWRNQLETMQ---Y 77
Query: 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLM 142
Q D+F+G + S +I+ V ++P + G+NA+VFAYG TG+GKT+TM G+ +PG++
Sbjct: 78 QFDAFYG-DSASQREIYMGSVCHILPHLLIGQNASVFAYGPTGAGKTHTMLGNPNQPGVI 136
Query: 143 PLAMSKILSICQSTGSTAE---------ISYYEVYMDRCYDLLEVKTKEISILDDKDGQL 193
P A+ +L + ++ S E +SY E+Y ++ DLLE K K++ I +DKD +
Sbjct: 137 PRAVRDLLQMSRTAASAPENENWTYTINMSYVEIYQEKVMDLLEPKNKDLPIREDKDHNI 196
Query: 194 HLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253
+ G+++ +NS +F E F Q R VA T LND SSRSH VL+I V
Sbjct: 197 LIPGVTQKMINSFADFDEHFIPASQNRTVASTKLNDRSSRSHAVLLIKVQKSQQVVPFRQ 256
Query: 254 LTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKL 313
LTGKL LIDLAG+EDNRRT N+GIRL ES IN SLF LS V+ ALN PR+PYR+SKL
Sbjct: 257 LTGKLYLIDLAGSEDNRRTGNQGIRLKESGAINSSLFTLSKVVDALNQGLPRIPYRDSKL 316
Query: 314 TRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHISNTLPSAQKVQT 366
TR+LQDSLGG++H++M+ + P + Y +++ ++ AA+S+ I N S + QT
Sbjct: 317 TRLLQDSLGGSAHSVMITNIAPEQTYYFDTLTALNFAAKSKQIINKPFSQETTQT 371
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Kinesin family member that is involved in spindle formation and the movements of chromosomes during mitosis and meiosis. Binds to microtubules and to DNA. Xenopus laevis (taxid: 8355) |
| >sp|Q7ZYL5|KF22B_XENLA Kinesin-like protein KIF22-B OS=Xenopus laevis GN=kif22-b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6P3R1|KIF22_XENTR Kinesin-like protein KIF22 OS=Xenopus tropicalis GN=kif22 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q3V300|KIF22_MOUSE Kinesin-like protein KIF22 OS=Mus musculus GN=Kif22 PE=2 SV=2 | Back alignment and function description |
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| >sp|A6QPL4|KIF22_BOVIN Kinesin-like protein KIF22 OS=Bos taurus GN=KIF22 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5I0E8|KIF22_RAT Kinesin-like protein KIF22 OS=Rattus norvegicus GN=Kif22 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q14807|KIF22_HUMAN Kinesin-like protein KIF22 OS=Homo sapiens GN=KIF22 PE=1 SV=5 | Back alignment and function description |
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| >sp|Q5REP4|KIF22_PONAB Kinesin-like protein KIF22 OS=Pongo abelii GN=KIF22 PE=2 SV=1 | Back alignment and function description |
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| >sp|A8WFU8|KIF22_DANRE Kinesin-like protein KIF22 OS=Danio rerio GN=kif22 PE=2 SV=1 | Back alignment and function description |
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| >sp|P33174|KIF4_MOUSE Chromosome-associated kinesin KIF4 OS=Mus musculus GN=Kif4 PE=2 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| 225440360 | 659 | PREDICTED: kinesin-like protein KIF22-B | 0.965 | 0.977 | 0.682 | 0.0 | |
| 356523149 | 642 | PREDICTED: kinesin-like protein KIF22-li | 0.922 | 0.957 | 0.653 | 0.0 | |
| 356566505 | 640 | PREDICTED: kinesin-like protein KIF22-li | 0.922 | 0.960 | 0.648 | 0.0 | |
| 255583123 | 644 | Osmotic avoidance abnormal protein, puta | 0.928 | 0.961 | 0.632 | 0.0 | |
| 224090681 | 585 | predicted protein [Populus trichocarpa] | 0.863 | 0.984 | 0.626 | 0.0 | |
| 357505599 | 671 | Kinesin-like protein KIF22-A [Medicago t | 0.920 | 0.915 | 0.592 | 0.0 | |
| 147817659 | 991 | hypothetical protein VITISV_007130 [Viti | 0.907 | 0.610 | 0.617 | 0.0 | |
| 449440335 | 622 | PREDICTED: kinesin-like protein KIF22-li | 0.892 | 0.956 | 0.581 | 0.0 | |
| 30679610 | 628 | kinesin family member 22 [Arabidopsis th | 0.916 | 0.972 | 0.581 | 0.0 | |
| 22531028 | 628 | kinesin-like protein [Arabidopsis thalia | 0.916 | 0.972 | 0.580 | 0.0 |
| >gi|225440360|ref|XP_002270444.1| PREDICTED: kinesin-like protein KIF22-B [Vitis vinifera] gi|297740374|emb|CBI30556.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/661 (68%), Positives = 518/661 (78%), Gaps = 17/661 (2%)
Query: 6 VSSSFNTPSKSTIPNSTSTS-SKVRVIVRVRPFLSQEIAA-KNGNSICCISVLDRGSLSC 63
+++S TP K+ STS SKVRVIVRVRPFL EIAA KNGN I C SVLD+ S
Sbjct: 1 MATSLITPKKANTMQLQSTSISKVRVIVRVRPFLPHEIAAAKNGNPISCASVLDQDCES- 59
Query: 64 NEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGA 123
EEV V+L D +T R ECY+LDSF G D +VS IFY EV+PLIPGIFHG NATVFAYGA
Sbjct: 60 GEEVVVHLNDQETSRRECYKLDSFLGPHDNNVSLIFYREVSPLIPGIFHGCNATVFAYGA 119
Query: 124 TGSGKTYTMQGSEERPGLMPLAMSKILSICQSTGSTAEISYYEVYMDRCYDLLEVKTKEI 183
TGSGKTYTMQG++E PGLMPL MS +L++C ST STAE+SYYEVYMDRCYDLLEVK KEI
Sbjct: 120 TGSGKTYTMQGTDELPGLMPLTMSAVLTMCWSTASTAEMSYYEVYMDRCYDLLEVKAKEI 179
Query: 184 SILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243
+ILDDKDGQ+HLKGLSRVP++SM+EF E+FS GIQRRKVAHTGLNDVSSRSHGVLVISVS
Sbjct: 180 AILDDKDGQIHLKGLSRVPISSMSEFYEVFSHGIQRRKVAHTGLNDVSSRSHGVLVISVS 239
Query: 244 TLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK 303
T D A +TGKLNLIDLAGNEDNRRTCNEGIRL ESAKINQSLFALSNVI+ALNNNK
Sbjct: 240 TPCDDGFGAVVTGKLNLIDLAGNEDNRRTCNEGIRLQESAKINQSLFALSNVIYALNNNK 299
Query: 304 PRVPYRESKLTRILQDSLGGTSHALMVACLNPGEYQESVHTVSLAARSRHISNTLPSAQK 363
PRVPYRESKLTRILQDSLGGTS ALMVACLNPGEYQESVHTVSLAARSRHISN++PSAQK
Sbjct: 300 PRVPYRESKLTRILQDSLGGTSRALMVACLNPGEYQESVHTVSLAARSRHISNSVPSAQK 359
Query: 364 VQTPMVKIDMEAKLRAWLESKGKTKSAQRMAVRGTPIVSKTPTSVCSVKKTIN-HSCRKV 422
TP VK+DMEAKLRAWLESKGKTKSAQRM G+P++SK P+S+ S+KK HS K
Sbjct: 360 QDTPNVKVDMEAKLRAWLESKGKTKSAQRMRAFGSPLMSKAPSSLSSLKKPYPCHSSTKA 419
Query: 423 KVSPKQDASNAEDRALCVPFRNLLIDEGLGDSCSESHHMVA----NDTE-EITAGKDGII 477
K Q ASNA++R L V RNL + G DS +ES + A N+TE E AG DG
Sbjct: 420 KAITNQGASNAKERVLSVQHRNLFNNRGSVDSGTESFNFAAENNTNNTEDEFKAGGDGSA 479
Query: 478 SISSPRHLPDE--QSEEKATFMNSQAS----PVFERKSATQSPLRTALSPININANTKPL 531
S + LPD+ +++K T M S S P+ E+ A Q LR LSP+N + + KPL
Sbjct: 480 S-ETNTILPDDALANDKKMTTMKSANSIGSPPISEKFKALQGSLRKVLSPVNSDDSRKPL 538
Query: 532 EKLSDTDQHCPL-LEPKTPRTPFTATCASNKFQPIGTPLDKFSARSIRLKNSLVQEYIDF 590
E LS Q C + EPKTP+TP TCA++ FQ + TPLDKF+ R+ LK+SL+QEYIDF
Sbjct: 539 EDLSSKGQVCSVPFEPKTPKTPTNMTCANDNFQMVDTPLDKFNVRTSNLKSSLIQEYIDF 598
Query: 591 LNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKAAKGIF 650
LNTAS EEL+ELKGIGQ+ A+YI ELR++SP+K LSDLEKIGLS+KQVYN+FG+ AKGIF
Sbjct: 599 LNTASIEELLELKGIGQKRAEYILELREASPLKMLSDLEKIGLSSKQVYNVFGRTAKGIF 658
Query: 651 D 651
D
Sbjct: 659 D 659
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523149|ref|XP_003530204.1| PREDICTED: kinesin-like protein KIF22-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356566505|ref|XP_003551471.1| PREDICTED: kinesin-like protein KIF22-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255583123|ref|XP_002532328.1| Osmotic avoidance abnormal protein, putative [Ricinus communis] gi|223527971|gb|EEF30055.1| Osmotic avoidance abnormal protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224090681|ref|XP_002309056.1| predicted protein [Populus trichocarpa] gi|222855032|gb|EEE92579.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357505599|ref|XP_003623088.1| Kinesin-like protein KIF22-A [Medicago truncatula] gi|355498103|gb|AES79306.1| Kinesin-like protein KIF22-A [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|147817659|emb|CAN60160.1| hypothetical protein VITISV_007130 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449440335|ref|XP_004137940.1| PREDICTED: kinesin-like protein KIF22-like [Cucumis sativus] gi|449483641|ref|XP_004156646.1| PREDICTED: kinesin-like protein KIF22-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|30679610|ref|NP_195857.2| kinesin family member 22 [Arabidopsis thaliana] gi|59958334|gb|AAX12877.1| At5g02370 [Arabidopsis thaliana] gi|332003081|gb|AED90464.1| kinesin family member 22 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|22531028|gb|AAM97018.1| kinesin-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| TAIR|locus:2180122 | 628 | AT5G02370 [Arabidopsis thalian | 0.742 | 0.788 | 0.595 | 1.4e-181 | |
| RGD|1311886 | 657 | Kif22 "kinesin family member 2 | 0.577 | 0.585 | 0.376 | 3.7e-68 | |
| MGI|MGI:109233 | 660 | Kif22 "kinesin family member 2 | 0.875 | 0.884 | 0.326 | 4.4e-68 | |
| UNIPROTKB|A6QPL4 | 662 | KIF22 "Kinesin-like protein KI | 0.881 | 0.888 | 0.333 | 2.4e-67 | |
| UNIPROTKB|E2RRZ0 | 664 | KIF22 "Uncharacterized protein | 0.880 | 0.884 | 0.325 | 8.2e-67 | |
| UNIPROTKB|I3LNN6 | 663 | KIF22 "Uncharacterized protein | 0.881 | 0.886 | 0.322 | 1.3e-66 | |
| UNIPROTKB|H3BRB3 | 611 | KIF22 "Kinesin-like protein KI | 0.508 | 0.554 | 0.385 | 1.5e-66 | |
| UNIPROTKB|Q14807 | 665 | KIF22 "Kinesin-like protein KI | 0.877 | 0.879 | 0.316 | 1.6e-63 | |
| ZFIN|ZDB-GENE-080204-34 | 634 | kif22 "kinesin family member 2 | 0.880 | 0.925 | 0.309 | 4.2e-63 | |
| UNIPROTKB|B7Z265 | 597 | KIF22 "cDNA FLJ53835, highly s | 0.833 | 0.931 | 0.315 | 3.1e-60 |
| TAIR|locus:2180122 AT5G02370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1417 (503.9 bits), Expect = 1.4e-181, Sum P(2) = 1.4e-181
Identities = 308/517 (59%), Positives = 375/517 (72%)
Query: 12 TPSKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYL 71
TP+K+ + +S+S S+ VRV++RVRPFL +EI+ ++ + C+SV+ G EVAVYL
Sbjct: 6 TPAKTKLLDSSSISN-VRVVLRVRPFLPREISDESCDGRSCVSVIG-GDGGDTSEVAVYL 63
Query: 72 KDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYT 131
KDPD+ R+E YQLD+F+G+ED++V IF EV+PLIPGIFHG NATV AYGATGSGKT+T
Sbjct: 64 KDPDSCRNESYQLDAFYGREDDNVKHIFDREVSPLIPGIFHGFNATVLAYGATGSGKTFT 123
Query: 132 MQGSEERPGLMPLAMSKILSICQSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKDG 191
MQG +E PGLMPL MS ILS+C+ T S AEISYYEVYMDRC+DLLEVK EI++ DDKDG
Sbjct: 124 MQGIDELPGLMPLTMSTILSMCEKTRSRAEISYYEVYMDRCWDLLEVKDNEIAVWDDKDG 183
Query: 192 QLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK 251
Q+HLKGLS VPV SM+EFQE + G+QRRKVAHTGLNDVSSRSHGVLVISV+ S+
Sbjct: 184 QVHLKGLSSVPVKSMSEFQEAYLCGVQRRKVAHTGLNDVSSRSHGVLVISVT------SQ 237
Query: 252 AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRES 311
+TGK+NLIDLAGNEDNRRT NEGIRL ESAKINQSLFALSNV++ALNNN PRVPYRE+
Sbjct: 238 GLVTGKINLIDLAGNEDNRRTGNEGIRLQESAKINQSLFALSNVVYALNNNLPRVPYRET 297
Query: 312 KLTRILQDSLGGTSHALMVACLNPGEYQESVHTVSLAARSRHISNTLPSAQKVQTPMVKI 371
KLTRILQDSLGGTS ALMVACLNPGEYQES+ TVSLAARSRHISN + KV+TP VKI
Sbjct: 298 KLTRILQDSLGGTSRALMVACLNPGEYQESLRTVSLAARSRHISNNVSLNPKVETPKVKI 357
Query: 372 DMEAKLRAWLESKGKTKSAQRMAVRGTPIVSKTPTSVC--SVKKTINHSCRKVKVSPKQD 429
DMEAKL+AWLESKGK KSA RM +P++ TS+ SVKK + C + ++
Sbjct: 358 DMEAKLQAWLESKGKMKSAHRMMAIRSPLMGTNQTSISQSSVKKLL---CHRSAIAESAK 414
Query: 430 ASNAEDRALCVPFRNLLIDEGLGDSCSESHHMVANDTEEITAGKDGIISISSPRHLPDEQ 489
+ R V RNL E L + S + N + + K+ S +L +
Sbjct: 415 LAGTGQRDAFVTARNLFGVETL--AASHLWEPIRN-LQLASPTKEDERDTSGEENLLVSE 471
Query: 490 SEEKATFMNSQASPVFERKSATQSPLRTALSPININA 526
+ + ++ E+K SPLR ALSPI+ NA
Sbjct: 472 ASLRDNTLD------VEKKYTELSPLREALSPIDSNA 502
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| RGD|1311886 Kif22 "kinesin family member 22" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:109233 Kif22 "kinesin family member 22" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A6QPL4 KIF22 "Kinesin-like protein KIF22" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RRZ0 KIF22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3LNN6 KIF22 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|H3BRB3 KIF22 "Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q14807 KIF22 "Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-080204-34 kif22 "kinesin family member 22" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B7Z265 KIF22 "cDNA FLJ53835, highly similar to Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 667 | |||
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 1e-139 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-109 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 2e-98 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 7e-97 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 4e-78 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 1e-76 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-74 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 7e-72 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 1e-70 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 1e-69 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 6e-68 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 3e-66 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 6e-66 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 8e-61 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 4e-60 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 3e-51 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 9e-46 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 2e-35 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 3e-29 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 2e-08 | |
| pfam12836 | 65 | pfam12836, HHH_3, Helix-hairpin-helix motif | 1e-04 |
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
Score = 408 bits (1051), Expect = e-139
Identities = 157/330 (47%), Positives = 211/330 (63%), Gaps = 17/330 (5%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDT-IRSECYQLDS 86
VRV+VRVRPFL E + + C+ +D +V +++P ++ YQ D+
Sbjct: 2 VRVVVRVRPFLDCEEDSSS-----CVRGIDSDQGQ---AKSVEIENPRNRGETKKYQFDA 53
Query: 87 FFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAM 146
F+G E + IF EV P++P + G+NATVFAYG+TG+GKT+TM G PGL+P +
Sbjct: 54 FYGTEC-TQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTL 112
Query: 147 SKILSICQSTG--STAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVN 204
S +L + + +SYYE+Y ++ YDLLE KE+ I +DKDG + + GL+ P+
Sbjct: 113 SDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIK 172
Query: 205 SMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLNLIDLA 264
SM EF+E + + R VA T LND SSRSH VL I V+ + L GKLNLIDLA
Sbjct: 173 SMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN---IQLEGKLNLIDLA 229
Query: 265 GNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGT 324
G+EDNRRT NEGIRL ESA IN SLF LS V+ ALN PR+PYRESKLTR+LQDSLGG
Sbjct: 230 GSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGG 289
Query: 325 SHALMVACLNPG--EYQESVHTVSLAARSR 352
S +MVA + P YQ+++ T++ A+RS+
Sbjct: 290 SRCIMVANIAPERSFYQDTLSTLNFASRSK 319
|
Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|205097 pfam12836, HHH_3, Helix-hairpin-helix motif | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG1555 | 149 | ComEA DNA uptake protein and related DNA-binding p | 99.59 | |
| PF12836 | 65 | HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE | 99.51 | |
| TIGR01259 | 120 | comE comEA protein. This model describes the ComEA | 99.38 | |
| TIGR00426 | 69 | competence protein ComEA helix-hairpin-helix repea | 99.25 | |
| PRK02515 | 132 | psbU photosystem II complex extrinsic protein prec | 99.13 | |
| COG1491 | 202 | Predicted RNA-binding protein [Translation, riboso | 98.24 | |
| PF04919 | 181 | DUF655: Protein of unknown function (DUF655); Inte | 98.18 | |
| PF00633 | 30 | HHH: Helix-hairpin-helix motif; InterPro: IPR00044 | 97.85 | |
| PF14579 | 90 | HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI | 97.25 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 97.09 | |
| COG2183 | 780 | Tex Transcriptional accessory protein [Transcripti | 97.08 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 97.04 | |
| PF06514 | 93 | PsbU: Photosystem II 12 kDa extrinsic protein (Psb | 96.83 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 96.83 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 96.79 | |
| PF03934 | 280 | T2SK: Type II secretion system (T2SS), protein K; | 96.44 | |
| cd00141 | 307 | NT_POLXc Nucleotidyltransferase (NT) domain of fam | 96.38 | |
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 95.61 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 95.23 | |
| smart00278 | 26 | HhH1 Helix-hairpin-helix DNA-binding motif class 1 | 94.56 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 94.51 | |
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 94.36 | |
| PRK13901 | 196 | ruvA Holliday junction DNA helicase RuvA; Provisio | 94.14 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 94.09 | |
| PRK00448 | 1437 | polC DNA polymerase III PolC; Validated | 94.04 | |
| smart00483 | 334 | POLXc DNA polymerase X family. includes vertebrate | 93.95 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 93.88 | |
| PRK14605 | 194 | ruvA Holliday junction DNA helicase RuvA; Provisio | 93.62 | |
| KOG2534 | 353 | consensus DNA polymerase IV (family X) [Replicatio | 93.55 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 92.85 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 92.74 | |
| PF10391 | 52 | DNA_pol_lambd_f: Fingers domain of DNA polymerase | 92.44 | |
| TIGR00084 | 191 | ruvA Holliday junction DNA helicase, RuvA subunit. | 91.94 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 91.81 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 91.79 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 91.42 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 90.61 | |
| PRK14601 | 183 | ruvA Holliday junction DNA helicase RuvA; Provisio | 90.4 | |
| PF11731 | 93 | Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd | 90.35 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 90.03 | |
| PRK14606 | 188 | ruvA Holliday junction DNA helicase RuvA; Provisio | 89.8 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 89.54 | |
| PRK14602 | 203 | ruvA Holliday junction DNA helicase RuvA; Provisio | 89.49 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 89.39 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 89.16 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 89.14 | |
| PRK07135 | 973 | dnaE DNA polymerase III DnaE; Validated | 88.79 | |
| PRK14603 | 197 | ruvA Holliday junction DNA helicase RuvA; Provisio | 88.68 | |
| COG1948 | 254 | MUS81 ERCC4-type nuclease [DNA replication, recomb | 88.65 | |
| TIGR00594 | 1022 | polc DNA-directed DNA polymerase III (polc). This | 88.62 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 88.43 | |
| PRK14606 | 188 | ruvA Holliday junction DNA helicase RuvA; Provisio | 88.24 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 88.19 | |
| PRK06620 | 214 | hypothetical protein; Validated | 88.14 | |
| PRK14604 | 195 | ruvA Holliday junction DNA helicase RuvA; Provisio | 88.01 | |
| PRK13901 | 196 | ruvA Holliday junction DNA helicase RuvA; Provisio | 87.99 | |
| PRK14667 | 567 | uvrC excinuclease ABC subunit C; Provisional | 87.96 | |
| PRK14601 | 183 | ruvA Holliday junction DNA helicase RuvA; Provisio | 87.74 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 87.71 | |
| PF02371 | 87 | Transposase_20: Transposase IS116/IS110/IS902 fami | 87.52 | |
| PRK14670 | 574 | uvrC excinuclease ABC subunit C; Provisional | 87.52 | |
| COG0632 | 201 | RuvA Holliday junction resolvasome, DNA-binding su | 87.51 | |
| PF03934 | 280 | T2SK: Type II secretion system (T2SS), protein K; | 87.5 | |
| PF14716 | 68 | HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU | 87.25 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 87.23 | |
| PRK14666 | 694 | uvrC excinuclease ABC subunit C; Provisional | 86.87 | |
| PRK09087 | 226 | hypothetical protein; Validated | 86.63 | |
| PRK14602 | 203 | ruvA Holliday junction DNA helicase RuvA; Provisio | 86.4 | |
| PRK14600 | 186 | ruvA Holliday junction DNA helicase RuvA; Provisio | 86.39 | |
| PRK14604 | 195 | ruvA Holliday junction DNA helicase RuvA; Provisio | 85.87 | |
| COG0632 | 201 | RuvA Holliday junction resolvasome, DNA-binding su | 85.71 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 85.6 | |
| PRK14603 | 197 | ruvA Holliday junction DNA helicase RuvA; Provisio | 85.51 | |
| PRK14669 | 624 | uvrC excinuclease ABC subunit C; Provisional | 85.45 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 84.8 | |
| PRK05898 | 971 | dnaE DNA polymerase III DnaE; Validated | 84.75 | |
| PRK14672 | 691 | uvrC excinuclease ABC subunit C; Provisional | 84.35 | |
| COG1796 | 326 | POL4 DNA polymerase IV (family X) [DNA replication | 83.96 | |
| smart00483 | 334 | POLXc DNA polymerase X family. includes vertebrate | 83.9 | |
| PRK14600 | 186 | ruvA Holliday junction DNA helicase RuvA; Provisio | 83.73 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 83.49 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 83.27 | |
| PRK12377 | 248 | putative replication protein; Provisional | 83.07 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 82.47 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 82.45 | |
| PRK14605 | 194 | ruvA Holliday junction DNA helicase RuvA; Provisio | 82.41 | |
| PRK00558 | 598 | uvrC excinuclease ABC subunit C; Validated | 82.15 | |
| cd00141 | 307 | NT_POLXc Nucleotidyltransferase (NT) domain of fam | 81.91 | |
| PRK08727 | 233 | hypothetical protein; Validated | 81.87 | |
| PRK10702 | 211 | endonuclease III; Provisional | 81.47 | |
| PRK07945 | 335 | hypothetical protein; Provisional | 81.36 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 81.08 | |
| PRK06526 | 254 | transposase; Provisional | 80.75 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 80.14 |
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-83 Score=711.89 Aligned_cols=345 Identities=37% Similarity=0.575 Sum_probs=302.9
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCC---CCceeeeeceeeCCCCCchhHHHH
Q 005960 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDT---IRSECYQLDSFFGQEDESVSKIFY 100 (667)
Q Consensus 24 ~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~---~~~~~F~FD~Vf~~~~~sQ~~Vf~ 100 (667)
...+|+|+||+||+...+.... ...++.+... ...+.++++.. ...+.|+||.||+++. +|++||.
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~---~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~ftfD~vf~~~s-tQ~dvy~ 71 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSEL---LKSILSVDPA-------HGRVSLKNPVAGIEGKPKSFTFDAVFDSDS-TQDDVYQ 71 (574)
T ss_pred cccceeEEEeecCCCchhhhhh---hccccccccc-------cceeeecCCcccccCCCCCceeeeeecCCC-CHHHHHH
Confidence 4568999999999998775544 2223333222 23445544433 2356799999999875 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccC-CCCCCChHHHHHHHHhhhccCC----ceEEEEEEEEecceeeec
Q 005960 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS-EERPGLMPLAMSKILSICQSTG----STAEISYYEVYMDRCYDL 175 (667)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~-~~~~GLipral~~LF~~~~~~~----~~v~vS~~EIYnE~v~DL 175 (667)
.++.|+|++|++|||+||||||||||||||||.|. ++..|||||++++||.+++... |.|++||+|||||.|+||
T Consensus 72 ~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DL 151 (574)
T KOG4280|consen 72 ETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDL 151 (574)
T ss_pred HHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHH
Confidence 99999999999999999999999999999999999 6678999999999999987653 899999999999999999
Q ss_pred cCCCC-CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEe--CCCCCc
Q 005960 176 LEVKT-KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLL--GDDSKA 252 (667)
Q Consensus 176 L~~~~-~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~--~~~~~~ 252 (667)
|++.. +.+.++++++.|+||+|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|++.. .++...
T Consensus 152 L~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~ 231 (574)
T KOG4280|consen 152 LSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMS 231 (574)
T ss_pred hCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccc
Confidence 99877 589999999999999999999999999999999999999999999999999999999999999833 334556
Q ss_pred eEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCC-CCCCCCchhhhhhhcccCCCccceEEE
Q 005960 253 ALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKP-RVPYRESKLTRILQDSLGGTSHALMVA 331 (667)
Q Consensus 253 ~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~-~IPYRdSkLTrLLqdsLgGnskt~mIa 331 (667)
...|||+|||||||||+.+++++|+|++|+.+||+||++||+||.+|.++++ ||||||||||+||||||||||+|+|||
T Consensus 232 ~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mia 311 (574)
T KOG4280|consen 232 GRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIA 311 (574)
T ss_pred cccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEE
Confidence 6789999999999999999999999999999999999999999999999887 999999999999999999999999999
Q ss_pred EeCCC--ChhhhHHHHHHHHHhhhcccccccccccCCchhhhHHH-HHHHHHHHhhccch
Q 005960 332 CLNPG--EYQESVHTVSLAARSRHISNTLPSAQKVQTPMVKIDME-AKLRAWLESKGKTK 388 (667)
Q Consensus 332 ~vsP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~~~~~~~~d~~-~~l~~~l~~~~k~~ 388 (667)
||+|+ +|+||++||+||+||+.|+|. |.++.|+. +.++.+.++...++
T Consensus 312 nvsp~~~~~~ETlsTLrfA~Rak~I~nk---------~~ined~~~~~~~~lq~ei~~Lk 362 (574)
T KOG4280|consen 312 NVSPSSDNYEETLSTLRFAQRAKAIKNK---------PVINEDPKDALLRELQEEIERLK 362 (574)
T ss_pred ecCchhhhhHHHHHHHHHHHHHHHhhcc---------ccccCCcchhhHHHHHHHHHHHH
Confidence 99998 579999999999999999995 55666665 66777777665554
|
|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A | Back alignment and domain information |
|---|
| >TIGR01259 comE comEA protein | Back alignment and domain information |
|---|
| >TIGR00426 competence protein ComEA helix-hairpin-helix repeat region | Back alignment and domain information |
|---|
| >PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional | Back alignment and domain information |
|---|
| >COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins | Back alignment and domain information |
|---|
| >PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] | Back alignment and domain information |
|---|
| >PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG2183 Tex Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
| >PF06514 PsbU: Photosystem II 12 kDa extrinsic protein (PsbU); InterPro: IPR010527 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF03934 T2SK: Type II secretion system (T2SS), protein K; InterPro: IPR005628 Members of this family are involved in the general secretion pathway | Back alignment and domain information |
|---|
| >cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases | Back alignment and domain information |
|---|
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
|---|
| >smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 | Back alignment and domain information |
|---|
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
|---|
| >PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
| >PRK00448 polC DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
| >smart00483 POLXc DNA polymerase X family | Back alignment and domain information |
|---|
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
| >PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains | Back alignment and domain information |
|---|
| >TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] | Back alignment and domain information |
|---|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
| >PRK07135 dnaE DNA polymerase III DnaE; Validated | Back alignment and domain information |
|---|
| >PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00594 polc DNA-directed DNA polymerase III (polc) | Back alignment and domain information |
|---|
| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
|---|
| >PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14667 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
| >PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA | Back alignment and domain information |
|---|
| >PRK14670 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF03934 T2SK: Type II secretion system (T2SS), protein K; InterPro: IPR005628 Members of this family are involved in the general secretion pathway | Back alignment and domain information |
|---|
| >PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK14666 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14669 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK05898 dnaE DNA polymerase III DnaE; Validated | Back alignment and domain information |
|---|
| >PRK14672 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00483 POLXc DNA polymerase X family | Back alignment and domain information |
|---|
| >PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK00558 uvrC excinuclease ABC subunit C; Validated | Back alignment and domain information |
|---|
| >cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK10702 endonuclease III; Provisional | Back alignment and domain information |
|---|
| >PRK07945 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 667 | ||||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-66 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 2e-49 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 2e-48 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-48 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 2e-46 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 7e-46 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 8e-46 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 2e-45 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 2e-45 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 8e-45 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 1e-44 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 1e-44 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 1e-44 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 2e-44 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 2e-44 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 2e-44 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 2e-44 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 2e-44 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 4e-44 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 6e-44 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-43 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 5e-43 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 5e-43 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 1e-42 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 1e-41 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 2e-40 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 8e-39 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-38 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-38 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-38 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 3e-36 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-36 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 3e-35 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 3e-35 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 3e-35 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 8e-35 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 2e-34 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 2e-34 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 4e-34 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 1e-33 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 4e-33 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 1e-32 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 1e-31 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 4e-30 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 7e-30 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-29 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 1e-27 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 2e-27 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 2e-27 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 9e-27 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 9e-27 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 1e-26 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 2e-26 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 2e-24 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 3e-24 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 4e-23 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 2e-10 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 2e-10 |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
|
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
Score = 337 bits (867), Expect = e-110
Identities = 142/385 (36%), Positives = 219/385 (56%), Gaps = 22/385 (5%)
Query: 11 NTPSKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVY 70
+ S ++VRV VR+RPF+ A + C+ +D SL E+A +
Sbjct: 6 HHSSGRENLYFQGPPARVRVAVRLRPFVDGTAGA---SDPPCVRGMDSCSL----EIANW 58
Query: 71 LKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTY 130
+T++ YQ D+F+G E + I+ V P++ + G+NA+V AYG TG+GKT+
Sbjct: 59 RNHQETLK---YQFDAFYG-ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTH 114
Query: 131 TMQGSEERPGLMPLAMSKILSICQSTGSTAE-------ISYYEVYMDRCYDLLEVKTKEI 183
TM GS E+PG++P A+ +L + + G+ +SY E+Y ++ DLL+ + ++
Sbjct: 115 TMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDL 174
Query: 184 SILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243
I +D G + + GLS+ P++S +F+ F + R V T LN SSRSH VL++ V
Sbjct: 175 VIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVD 234
Query: 244 TLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK 303
GKL LIDLAG+EDNRRT N+G+RL ES IN SLF L V+ ALN
Sbjct: 235 QRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL 294
Query: 304 PRVPYRESKLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHISNTLPSA 361
PRVPYR+SKLTR+LQDSLGG++H++++A + P Y ++V ++ AARS+ + N +
Sbjct: 295 PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTN 354
Query: 362 QKVQTPMVKI--DMEAKLRAWLESK 384
+ +Q + + +L E+K
Sbjct: 355 ESLQPHALGPVKLSQKELLGPPEAK 379
|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Length = 98 | Back alignment and structure |
|---|
| >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Length = 75 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.93 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.9 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.87 | |
| 3arc_U | 97 | Photosystem II 12 kDa extrinsic protein; PSII, mem | 99.35 | |
| 1s5l_U | 134 | Photosystem II 12 kDa extrinsic protein; photosynt | 99.29 | |
| 2duy_A | 75 | Competence protein comea-related protein; helix-ha | 99.23 | |
| 2edu_A | 98 | Kinesin-like protein KIF22; kinesin-like DNA bindi | 99.04 | |
| 2i5h_A | 205 | Hypothetical protein AF1531; PFAM:DUF655, PSI-2, s | 99.01 | |
| 3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 98.69 | |
| 3psf_A | 1030 | Transcription elongation factor SPT6; nucleus; 2.5 | 98.21 | |
| 3psi_A | 1219 | Transcription elongation factor SPT6; nucleus; 3.3 | 98.13 | |
| 3ci0_K | 298 | Pseudopilin GSPK; general secretory pathway, pseud | 97.7 | |
| 2bcq_A | 335 | DNA polymerase lambda; misalignment, extrahelical, | 97.35 | |
| 2fmp_A | 335 | DNA polymerase beta; nucleotidyl transferase, tran | 96.92 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 96.75 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 96.74 | |
| 2ihm_A | 360 | POL MU, DNA polymerase MU; helix-turn-helix, trans | 96.72 | |
| 1vq8_Y | 241 | 50S ribosomal protein L32E; ribosome 50S, protein- | 96.71 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 96.47 | |
| 1ixr_A | 191 | Holliday junction DNA helicase RUVA; heterooligome | 96.2 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 96.17 | |
| 2ztd_A | 212 | Holliday junction ATP-dependent DNA helicase RUVA; | 95.98 | |
| 1jms_A | 381 | Terminal deoxynucleotidyltransferase; polymerase; | 95.95 | |
| 1cuk_A | 203 | RUVA protein; DNA repair, SOS response, DNA-bindin | 95.63 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 95.44 | |
| 2w9m_A | 578 | Polymerase X; SAXS, DNA repair, DNA polymerase, DN | 95.43 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 94.62 | |
| 3f2b_A | 1041 | DNA-directed DNA polymerase III alpha chain; DNA p | 94.02 | |
| 2bgw_A | 219 | XPF endonuclease; hydrolase, structure specific en | 93.93 | |
| 3c65_A | 226 | Uvrabc system protein C; UVRC, endonuclease, nucle | 92.85 | |
| 3b0x_A | 575 | DNA polymerase beta family (X family); structural | 91.43 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 90.8 | |
| 2hnh_A | 910 | DNA polymerase III alpha subunit; DNA replication, | 90.3 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 89.84 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 89.19 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 88.89 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 88.89 | |
| 1ixr_A | 191 | Holliday junction DNA helicase RUVA; heterooligome | 88.72 | |
| 3ci0_K | 298 | Pseudopilin GSPK; general secretory pathway, pseud | 88.27 | |
| 1cuk_A | 203 | RUVA protein; DNA repair, SOS response, DNA-bindin | 88.21 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 87.91 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 87.56 | |
| 3c1y_A | 377 | DNA integrity scanning protein DISA; DNA damage, D | 86.84 | |
| 2fmp_A | 335 | DNA polymerase beta; nucleotidyl transferase, tran | 86.83 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 86.23 | |
| 1b22_A | 114 | DNA repair protein RAD51; DNA binding, riken struc | 85.96 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 85.64 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 82.32 | |
| 2ztd_A | 212 | Holliday junction ATP-dependent DNA helicase RUVA; | 82.23 | |
| 1jms_A | 381 | Terminal deoxynucleotidyltransferase; polymerase; | 81.88 | |
| 2ihm_A | 360 | POL MU, DNA polymerase MU; helix-turn-helix, trans | 81.77 | |
| 4gfj_A | 685 | Topoisomerase V; helix-hairpin-helix, DNA repair e | 80.46 |
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-85 Score=711.30 Aligned_cols=331 Identities=40% Similarity=0.671 Sum_probs=253.6
Q ss_pred CCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCC-CCCCceeeeeceeeCCCCCchhHHHH
Q 005960 22 TSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-DTIRSECYQLDSFFGQEDESVSKIFY 100 (667)
Q Consensus 22 ~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~-~~~~~~~F~FD~Vf~~~~~sQ~~Vf~ 100 (667)
....++|+|+|||||++..|.... ...|+...+...+ .+ .+. .......|.||+||++++ +|++||+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~---~~~~v~~~~~~~~------~i--~~~~~~~~~~~f~FD~Vf~~~~-tQ~~Vy~ 84 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGAS---DPPCVRGMDSCSL------EI--ANWRNHQETLKYQFDAFYGERS-TQQDIYA 84 (388)
T ss_dssp SSCCCCCEEEEEECCCC----------------------------------------CEEEEECSEEECTTC-CHHHHHH
T ss_pred cCCCCCEEEEEECCCCChhhhccC---CCceEEecCCCeE------EE--ecCCCCCCeeEEEcceEecCCC-CHhHHHH
Confidence 345689999999999999986543 3446655443221 11 111 112356899999999985 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-------CCceEEEEEEEEecceee
Q 005960 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-------TGSTAEISYYEVYMDRCY 173 (667)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-------~~~~v~vS~~EIYnE~v~ 173 (667)
..++|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.++. ..+.|++||+|||||+|+
T Consensus 85 ~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~ 164 (388)
T 3bfn_A 85 GSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVL 164 (388)
T ss_dssp HHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeee
Confidence 9999999999999999999999999999999999999999999999999998753 246899999999999999
Q ss_pred eccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCce
Q 005960 174 DLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253 (667)
Q Consensus 174 DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~ 253 (667)
|||++....+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+.........
T Consensus 165 DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~ 244 (388)
T 3bfn_A 165 DLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQ 244 (388)
T ss_dssp ESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCE
T ss_pred ehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCce
Confidence 99999888899999999999999999999999999999999999999999999999999999999999998765544456
Q ss_pred EEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEe
Q 005960 254 LTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACL 333 (667)
Q Consensus 254 ~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~v 333 (667)
..|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|.+++.|||||||||||||||+||||++|+|||||
T Consensus 245 ~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~i 324 (388)
T 3bfn_A 245 REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANI 324 (388)
T ss_dssp EEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEE
T ss_pred eEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--ChhhhHHHHHHHHHhhhccccccccccc
Q 005960 334 NPG--EYQESVHTVSLAARSRHISNTLPSAQKV 364 (667)
Q Consensus 334 sP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~ 364 (667)
||+ +++||++||+||+||++|+|.+..|+..
T Consensus 325 SP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~ 357 (388)
T 3bfn_A 325 APERRFYLDTVSALNFAARSKEVINRPFTNESL 357 (388)
T ss_dssp CCSGGGHHHHHHHHHHHCSEEEEC---------
T ss_pred CCccccHHHHHHHHHHHHHHhhCcCcCcccCCC
Confidence 997 6899999999999999999976666544
|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U* | Back alignment and structure |
|---|
| >1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
| >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 | Back alignment and structure |
|---|
| >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 | Back alignment and structure |
|---|
| >2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1 | Back alignment and structure |
|---|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
|---|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6 | Back alignment and structure |
|---|
| >2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... | Back alignment and structure |
|---|
| >2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 | Back alignment and structure |
|---|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A | Back alignment and structure |
|---|
| >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* | Back alignment and structure |
|---|
| >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A | Back alignment and structure |
|---|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
| >2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
| >3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* | Back alignment and structure |
|---|
| >2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A | Back alignment and structure |
|---|
| >3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
| >3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 | Back alignment and structure |
|---|
| >3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6 | Back alignment and structure |
|---|
| >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* | Back alignment and structure |
|---|
| >2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A | Back alignment and structure |
|---|
| >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* | Back alignment and structure |
|---|
| >2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 667 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 2e-64 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 1e-59 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 2e-59 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 7e-59 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 3e-57 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 2e-56 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 9e-56 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-53 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 2e-53 | |
| d2duya1 | 65 | a.60.2.7 (A:11-75) Uncharacterized protein TTHA196 | 2e-06 | |
| d3bzka1 | 90 | a.60.2.6 (A:474-563) Transcriptional accessory fac | 4e-06 | |
| d2edua1 | 91 | a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human | 8e-06 | |
| d2i5ha1 | 180 | e.71.1.1 (A:16-195) Hypothetical protein AF1531 {A | 0.004 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 213 bits (544), Expect = 2e-64
Identities = 110/336 (32%), Positives = 168/336 (50%), Gaps = 28/336 (8%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
++V+ R RP E+ ++ I S+ Y D
Sbjct: 7 IKVMCRFRPLNESEVNR---GDKYIAKFQGEDTV--------------VIASKPYAFDRV 49
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP---GLMPL 144
F S +++ ++ + G N T+FAYG T SGKT+TM+G P G++P
Sbjct: 50 FQ-SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPR 108
Query: 145 AMS----KILSICQSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSR 200
+ I S+ ++ ++SY+E+Y+D+ DLL+V +S+ +DK+ ++KG +
Sbjct: 109 IVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTE 168
Query: 201 VPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLNL 260
V S E + G R VA T +N+ SSRSH + +I+V ++ L+GKL L
Sbjct: 169 RFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQE-NTQTEQKLSGKLYL 227
Query: 261 IDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS 320
+DLAG+E +T EG L E+ IN+SL AL NVI AL VPYR+SK+TRILQDS
Sbjct: 228 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS 287
Query: 321 LGGTSHALMVACLNPGE--YQESVHTVSLAARSRHI 354
LGG +V C +P E+ T+ R++ I
Sbjct: 288 LGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Length = 65 | Back information, alignment and structure |
|---|
| >d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Length = 90 | Back information, alignment and structure |
|---|
| >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
| >d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d2duya1 | 65 | Uncharacterized protein TTHA1967 {Thermus thermoph | 99.5 | |
| d3bzka1 | 90 | Transcriptional accessory factor Tex {Pseudomonas | 99.45 | |
| d2edua1 | 91 | KIF22, C-terminal domain {Human (Homo sapiens) [Ta | 99.43 | |
| d2axtu1 | 98 | Photosystem II 12 kDa extrinsic protein PsbU {Ther | 99.39 | |
| d2i5ha1 | 180 | Hypothetical protein AF1531 {Archaeoglobus fulgidu | 98.28 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 97.55 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 97.38 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 97.3 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 97.04 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 96.75 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 96.22 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 95.92 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 95.6 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 95.54 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 95.33 | |
| d3ci0k1 | 71 | Pseudopilin GspK {Escherichia coli [TaxId: 562]} | 95.15 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 94.87 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 94.48 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 94.11 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 93.91 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 93.75 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 93.66 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 93.42 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.55 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 92.48 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 92.38 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 92.35 | |
| d2fmpa1 | 82 | DNA polymerase beta, N-terminal (8 kD)-domain {Hum | 92.18 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 91.5 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 91.37 | |
| d1jmsa1 | 95 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 90.88 | |
| d2bcqa1 | 76 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 90.04 | |
| d1dgsa1 | 181 | NAD+-dependent DNA ligase, domain 3 {Thermus filif | 89.59 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 88.88 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 88.02 | |
| d1keaa_ | 217 | Thymine-DNA glycosylase {Archaeon Methanobacterium | 87.78 | |
| d1wg8a1 | 98 | Putative methyltransferase TM0872, insert domain { | 86.21 | |
| d1orna_ | 214 | Endonuclease III {Escherichia coli [TaxId: 562]} | 86.19 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 85.77 | |
| d1kg2a_ | 224 | Catalytic domain of MutY {Escherichia coli [TaxId: | 85.43 | |
| d1rrqa1 | 221 | Catalytic domain of MutY {Bacillus stearothermophi | 85.43 | |
| d2abka_ | 211 | Endonuclease III {Escherichia coli [TaxId: 562]} | 84.64 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 83.81 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.61 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 82.93 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 82.85 | |
| d1dgsa1 | 181 | NAD+-dependent DNA ligase, domain 3 {Thermus filif | 82.57 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 80.07 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=1.8e-77 Score=645.07 Aligned_cols=321 Identities=32% Similarity=0.515 Sum_probs=277.9
Q ss_pred CeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhhccch
Q 005960 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPL 106 (667)
Q Consensus 27 ~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v~pl 106 (667)
+|+|+|||||+.+.|...+ ...++.+.+... ...... ....+.|.||+||++++ +|++||+. +.|+
T Consensus 1 rIkV~vRvRP~~~~E~~~~---~~~~v~~~~~~~-------~~~~~~--~~~~~~f~FD~vf~~~~-~q~~vy~~-v~~l 66 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAK---ERNAIRSVDEFT-------VEHLWK--DDKAKQHMYDRVFDGNA-TQDDVFED-TKYL 66 (364)
T ss_dssp CCEEEEEECCCCHHHHHTT---CCBCEEECSTTE-------EEEECS--SSSEEEEECSEEECTTC-CHHHHHHT-TTHH
T ss_pred CeEEEEEcCCCChhhcccC---CCCeEEeCCCCe-------EEecCC--CCCceEEECCeecCCCC-CHHHHHHH-HHHH
Confidence 6999999999999887654 334555554422 122211 22457899999999886 88999986 6999
Q ss_pred hhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc----CCceEEEEEEEEecceeeeccCCCC--
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCYDLLEVKT-- 180 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~DLL~~~~-- 180 (667)
|+++++|||+||||||||||||||||+|+.+++||+||++++||+.+.. ..+.|++||+|||||++||||.+..
T Consensus 67 v~~~l~G~n~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~ 146 (364)
T d1sdma_ 67 VQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAK 146 (364)
T ss_dssp HHHHHTTCEEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSC
T ss_pred HHHHhcCCceeeeccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCccccc
Confidence 9999999999999999999999999999999999999999999987754 3468999999999999999998654
Q ss_pred -CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceEEEEEE
Q 005960 181 -KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLN 259 (667)
Q Consensus 181 -~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~ 259 (667)
..+.+++++.++++|.|++++.|.+++|+..+|..|..+|.+++|.+|..|||||+||+|++.+...+ ......++|+
T Consensus 147 ~~~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~-~~~~~~~kl~ 225 (364)
T d1sdma_ 147 RLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-TQAIARGKLS 225 (364)
T ss_dssp CCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETT-TCCEEEEEEE
T ss_pred ccccceeecccCccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccC-cceeeeEEEE
Confidence 35788999999999999999999999999999999999999999999999999999999999887654 3455789999
Q ss_pred EEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEeCCC--C
Q 005960 260 LIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--E 337 (667)
Q Consensus 260 fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~--~ 337 (667)
||||||+||..++++.|.+++|+..||+||.+|++||.+|+++..|||||+||||+||||+||||++|+|||||||+ +
T Consensus 226 ~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~ 305 (364)
T d1sdma_ 226 FVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESN 305 (364)
T ss_dssp EEECCCCSCCCC---------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred eechhhccccccccccCceeeeccccccchhhHHHHHHHHHcCCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997 6
Q ss_pred hhhhHHHHHHHHHhhhccccccccc
Q 005960 338 YQESVHTVSLAARSRHISNTLPSAQ 362 (667)
Q Consensus 338 ~~ETlsTL~fA~rar~I~N~~~~~~ 362 (667)
|+||++||+||+||+.|+|.+..|.
T Consensus 306 ~~eTl~TL~fa~~ak~i~n~p~~n~ 330 (364)
T d1sdma_ 306 LDETHNSLTYASRVRSIVNDPSKNV 330 (364)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCCE
T ss_pred HHHHHHHHHHHHHHhhcccCCcccC
Confidence 9999999999999999999776654
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} | Back information, alignment and structure |
|---|
| >d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
|---|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|