Citrus Sinensis ID: 005967
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | 2.2.26 [Sep-21-2011] | |||||||
| Q9USQ7 | 606 | Diphthine--ammonia ligase | yes | no | 0.577 | 0.635 | 0.346 | 1e-53 | |
| A2RV01 | 255 | Diphthine--ammonia ligase | yes | no | 0.256 | 0.670 | 0.566 | 5e-50 | |
| Q9CQ28 | 267 | Diphthine--ammonia ligase | yes | no | 0.271 | 0.677 | 0.545 | 4e-48 | |
| Q7L8W6 | 267 | Diphthine--ammonia ligase | yes | no | 0.253 | 0.632 | 0.561 | 6e-48 | |
| Q2HJF5 | 267 | Diphthine--ammonia ligase | yes | no | 0.248 | 0.621 | 0.577 | 7e-48 | |
| Q5M9F5 | 267 | Diphthine--ammonia ligase | yes | no | 0.271 | 0.677 | 0.540 | 7e-48 | |
| Q12429 | 685 | Diphthine--ammonia ligase | yes | no | 0.673 | 0.655 | 0.286 | 2e-41 | |
| Q57990 | 223 | Uncharacterized protein M | yes | no | 0.217 | 0.650 | 0.367 | 7e-12 | |
| P52758 | 137 | Ribonuclease UK114 OS=Hom | no | no | 0.169 | 0.824 | 0.290 | 1e-06 | |
| P80601 | 137 | Ribonuclease UK114 OS=Cap | N/A | no | 0.091 | 0.445 | 0.426 | 3e-06 |
| >sp|Q9USQ7|DPH6_SCHPO Diphthine--ammonia ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug71 PE=1 SV=1 | Back alignment and function desciption |
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Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 221/421 (52%), Gaps = 36/421 (8%)
Query: 3 HQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSL 62
+Q L Y+ T DE ED+Y L+ V P + AVS+GAI S YQR RVE+VC RLGL SL
Sbjct: 77 NQNLDYQFTEKDETEDLYRLIKRVLTNHPDLEAVSTGAILSTYQRTRVENVCKRLGLKSL 136
Query: 63 AYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINV 122
++LW++DQ LL +M+ +G+NAI +KVAA+GL K LGK +A + L L + + ++
Sbjct: 137 SFLWQKDQEKLLNDMVVSGLNAILIKVAAIGLTR-KDLGKSLAEMQDKLLTLNKKFELHP 195
Query: 123 CGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV---------LHPLAFHLE 173
CGEGGEYETL LDCPLF RIVL + +VV HS+ + + V P++ E
Sbjct: 196 CGEGGEYETLVLDCPLF-KKRIVLTDKEVVEHSSGEVCYLKVKACVKDKPEWQPISLKSE 254
Query: 174 YKAGSASLSGSRETE--NSIQEKTGLVFEVQGECPQNSEAMCLPVAEVTDSVEVTDNRLN 231
+ L G + ++I +K L+ + Q E P + + +P+ E
Sbjct: 255 L-VPNEELLGEEYSHIYHTISKKYELI-DDQEETP--TSLIPIPLRES------------ 298
Query: 232 ISRRKKDNTFSICCWLQETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISD 291
+ ++K +F + + T+ + + + + L YG+ +V ++ + +S
Sbjct: 299 -AFQQKKGSFLVLGNVVATKGSYNTFQGEAESAINNLNELLGTYGYSNKNVYFVTVILSS 357
Query: 292 MNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKAYIEVLVANDQSKRVLHVQ 351
M++FA N Y K+ PSRS + PL + + +V + KR LHVQ
Sbjct: 358 MSKFAEFNSVYNKYFDF----TNPPSRSCVAAPL--ASEYRIVMSCIVGDVTEKRALHVQ 411
Query: 352 SISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKC 411
S WAP+ IGPYSQ+ V+ ++GQ+GL P M L E+ ALQ++ VAK
Sbjct: 412 GQSYWAPANIGPYSQSICANGVVFISGQIGLIPSVMELKLHDKIFEMVLALQHANRVAKA 471
Query: 412 F 412
Sbjct: 472 M 472
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Has a role in meiosis. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|A2RV01|DPH6_DANRE Diphthine--ammonia ligase OS=Danio rerio GN=atpbd4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9CQ28|DPH6_MOUSE Diphthine--ammonia ligase OS=Mus musculus GN=Atpbd4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7L8W6|DPH6_HUMAN Diphthine--ammonia ligase OS=Homo sapiens GN=ATPBD4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q2HJF5|DPH6_BOVIN Diphthine--ammonia ligase OS=Bos taurus GN=ATPBD4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5M9F5|DPH6_RAT Diphthine--ammonia ligase OS=Rattus norvegicus GN=Atpbd4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q12429|DPH6_YEAST Diphthine--ammonia ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPH6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q57990|Y570_METJA Uncharacterized protein MJ0570 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0570 PE=4 SV=1 | Back alignment and function description |
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| >sp|P52758|UK114_HUMAN Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1 | Back alignment and function description |
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| >sp|P80601|UK114_CAPHI Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| 255561955 | 745 | protein with unknown function [Ricinus c | 0.998 | 0.893 | 0.686 | 0.0 | |
| 224123564 | 742 | predicted protein [Populus trichocarpa] | 0.995 | 0.894 | 0.694 | 0.0 | |
| 225465631 | 741 | PREDICTED: meiotically up-regulated gene | 0.988 | 0.889 | 0.674 | 0.0 | |
| 224144584 | 751 | predicted protein [Populus trichocarpa] | 0.995 | 0.884 | 0.690 | 0.0 | |
| 356571763 | 747 | PREDICTED: meiotically up-regulated gene | 0.997 | 0.890 | 0.636 | 0.0 | |
| 449470226 | 731 | PREDICTED: LOW QUALITY PROTEIN: meiotica | 0.979 | 0.893 | 0.639 | 0.0 | |
| 449477720 | 735 | PREDICTED: meiotically up-regulated gene | 0.979 | 0.888 | 0.639 | 0.0 | |
| 145338105 | 718 | endoribonuclease [Arabidopsis thaliana] | 0.958 | 0.889 | 0.620 | 0.0 | |
| 297833126 | 717 | endoribonuclease [Arabidopsis lyrata sub | 0.958 | 0.891 | 0.627 | 0.0 | |
| 7547107 | 715 | unknown protein [Arabidopsis thaliana] | 0.953 | 0.889 | 0.617 | 0.0 |
| >gi|255561955|ref|XP_002521986.1| protein with unknown function [Ricinus communis] gi|223538790|gb|EEF40390.1| protein with unknown function [Ricinus communis] | Back alignment and taxonomy information |
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Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/667 (68%), Positives = 545/667 (81%), Gaps = 1/667 (0%)
Query: 2 RHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVS 61
R QKL+YR TPGDEVEDM+ILLNEVK QIPSVTAVSSGAIASDYQRLRVESVCSRLGLVS
Sbjct: 79 RDQKLNYRTTPGDEVEDMFILLNEVKTQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVS 138
Query: 62 LAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGIN 121
LAYLWKQDQS+LLQEMITNGI AITVKVAAMGL+P KHLGKEIAFL P+LHKLKE YGIN
Sbjct: 139 LAYLWKQDQSMLLQEMITNGIVAITVKVAAMGLDPAKHLGKEIAFLKPHLHKLKELYGIN 198
Query: 122 VCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAFHLEYKAGSASL 181
VCGEGGEYETLTLDCPLFVNARIVLDEF +VLHS+DSIAPVGV+HPL FHLE K +A
Sbjct: 199 VCGEGGEYETLTLDCPLFVNARIVLDEFTIVLHSSDSIAPVGVIHPLEFHLENKERAALS 258
Query: 182 SGSRETENSIQEKTGLVFEVQGECPQNSEAMCLPVAEVTDSVEVTDNRLNISRRKKDNTF 241
SG+ +T N QEKTG VFEVQ +C + SE CL AE+ + EV RL IS+ +KD+TF
Sbjct: 259 SGNVKTNNFCQEKTGPVFEVQVDCSKRSETTCLTSAEILNIAEVKHERLCISKTQKDSTF 318
Query: 242 SICCWLQETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANET 301
SI CWLQ++ TS L +DL++VLK +ES+L RYGF W HV+YIHLYI+DMNEF ANE
Sbjct: 319 SISCWLQDSGNTSTALNEDLKIVLKHMESQLARYGFGWEHVVYIHLYIADMNEFTTANEM 378
Query: 302 YVKFITHEKCPCGVPSRSTIELPLLEVGLGKAYIEVLVANDQSKRVLHVQSISCWAPSCI 361
YV+FIT EKCP GVPSRSTIELPLL+VGLGKAYIEVLVAND+SK VLHVQSIS WAPSCI
Sbjct: 379 YVRFITQEKCPFGVPSRSTIELPLLQVGLGKAYIEVLVANDKSKNVLHVQSISSWAPSCI 438
Query: 362 GPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAI 421
GPYSQATLHKE+L MAGQLGLDPPTM LC+GGP ELEQAL+NSEAVAKCF+CSI +SA+
Sbjct: 439 GPYSQATLHKEMLYMAGQLGLDPPTMALCSGGPAAELEQALENSEAVAKCFHCSICSSAV 498
Query: 422 YFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSAL 481
F +YCS + S+RLKIQEK ++F+KQMR+ +E + KVLDPI+L+VL +LPK A
Sbjct: 499 LFTIYCSKQIPLSDRLKIQEKQNSFIKQMRMLELQEGNTRKVLDPIYLYVLVPDLPKRAF 558
Query: 482 VEIKPILYVTDDSETVSEIVQDLSCMKAPLHWGFQHADWHESCFQKCVVHEKICAVILSI 541
VE+KP+L+V+ D++ + V LS P WGF+ A WH+SC QKCVV KICAV++SI
Sbjct: 559 VEVKPVLFVSKDADMENATVHSLSPTVLPNCWGFEQALWHDSCIQKCVVSGKICAVLMSI 618
Query: 542 TCEIAARICSESLDASQSKDCQTSQADGGMGRLSRFCIYLLNKIIVENNFSWEDVTNLRL 601
T +I A++CSE+ A++++D Q S M R++RFCIYLL+K++VE++FSWE+ LR
Sbjct: 619 TNDIVAKVCSEAQSANENEDHQNSLTKVQMERITRFCIYLLDKVVVESDFSWEETMTLRF 678
Query: 602 YFPTSLSMPMVTLSAIFSSAFDELAVMNPRMKIDGDSIFNLVPVLGAGRS-ATMDDIITC 660
Y PTSLSM + T+S +F+SAF EL+ M ++ + FN+VPVLGAG+S A+MDD+ITC
Sbjct: 679 YLPTSLSMTLETVSLMFTSAFKELSEMGRTIQTGEEPAFNIVPVLGAGKSVASMDDVITC 738
Query: 661 ELFAQKS 667
ELFAQKS
Sbjct: 739 ELFAQKS 745
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123564|ref|XP_002319111.1| predicted protein [Populus trichocarpa] gi|222857487|gb|EEE95034.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225465631|ref|XP_002268271.1| PREDICTED: meiotically up-regulated gene 71 protein [Vitis vinifera] gi|302143608|emb|CBI22361.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224144584|ref|XP_002325340.1| predicted protein [Populus trichocarpa] gi|222862215|gb|EEE99721.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356571763|ref|XP_003554042.1| PREDICTED: meiotically up-regulated gene 71 protein-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449470226|ref|XP_004152819.1| PREDICTED: LOW QUALITY PROTEIN: meiotically up-regulated gene 71 protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449477720|ref|XP_004155103.1| PREDICTED: meiotically up-regulated gene 71 protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|145338105|ref|NP_187098.2| endoribonuclease [Arabidopsis thaliana] gi|332640566|gb|AEE74087.1| endoribonuclease [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297833126|ref|XP_002884445.1| endoribonuclease [Arabidopsis lyrata subsp. lyrata] gi|297330285|gb|EFH60704.1| endoribonuclease [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|7547107|gb|AAF63779.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| TAIR|locus:2100910 | 718 | AT3G04480 "AT3G04480" [Arabido | 0.808 | 0.750 | 0.649 | 3e-188 | |
| ZFIN|ZDB-GENE-050227-15 | 456 | atpbd4 "ATP binding domain 4" | 0.524 | 0.767 | 0.407 | 1.1e-62 | |
| DICTYBASE|DDB_G0278373 | 752 | DDB_G0278373 "endoribonuclease | 0.544 | 0.482 | 0.364 | 1.6e-59 | |
| POMBASE|SPBC577.12 | 606 | mug71 "diphthamide synthetase | 0.611 | 0.673 | 0.343 | 2.1e-52 | |
| MGI|MGI:1913882 | 267 | Atpbd4 "ATP binding domain 4" | 0.269 | 0.674 | 0.548 | 1.4e-46 | |
| RGD|1310006 | 267 | Atpbd4 "ATP binding domain 4" | 0.269 | 0.674 | 0.543 | 1.8e-46 | |
| UNIPROTKB|Q7L8W6 | 267 | ATPBD4 "Diphthine--ammonia lig | 0.269 | 0.674 | 0.538 | 2.3e-46 | |
| UNIPROTKB|Q2HJF5 | 267 | ATPBD4 "Diphthine--ammonia lig | 0.269 | 0.674 | 0.543 | 3e-46 | |
| CGD|CAL0002720 | 646 | orf19.839 [Candida albicans (t | 0.230 | 0.238 | 0.490 | 5.7e-45 | |
| UNIPROTKB|Q5AHF8 | 646 | CaO19.839 "Putative uncharacte | 0.230 | 0.238 | 0.490 | 5.7e-45 |
| TAIR|locus:2100910 AT3G04480 "AT3G04480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
Identities = 358/551 (64%), Positives = 429/551 (77%)
Query: 2 RHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVS 61
RHQKLSY+MTP DEVEDM++LL+EVKRQIPS+TAVSSGAIASDYQRLRVES+CSRLGLVS
Sbjct: 77 RHQKLSYQMTPDDEVEDMFVLLSEVKRQIPSITAVSSGAIASDYQRLRVESICSRLGLVS 136
Query: 62 LAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGIN 121
LA+LWKQDQ+LLLQ+MI NGI AI VKVAA+GL+P KHLGK++AF++PYL KLKE YG N
Sbjct: 137 LAFLWKQDQTLLLQDMIANGIKAILVKVAAIGLDPSKHLGKDLAFMEPYLLKLKEKYGSN 196
Query: 122 VCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAFHLEYKAGSASL 181
VCGEGGEYETLTLDCPLF NA IVLDE+QVVLHS DSIAPVGVLHP FHLE K S
Sbjct: 197 VCGEGGEYETLTLDCPLFTNASIVLDEYQVVLHSPDSIAPVGVLHPSTFHLEKKGNPDS- 255
Query: 182 SGSRETENSIQEKTGLVFEVQGECPQNSEAMCLPVAEVTDSVEVTDNRLNISRRKKDNTF 241
+S +E++ LV EV G+ P S++ + D VE T NRL+ISR +K NTF
Sbjct: 256 -------HSPEEESSLVSEVLGDGPNTSDSTRQRDNGIVDLVEHTSNRLHISRAEKHNTF 308
Query: 242 SICCWLQETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYIHLYISDMNEFAVANET 301
SICCWL+++ ++S GL +DL VL ++ES+L+++G++W HVLYIHLYISDM+EFAVANET
Sbjct: 309 SICCWLEDSSESSKGLKEDLETVLTELESQLLKHGYNWQHVLYIHLYISDMSEFAVANET 368
Query: 302 YVKFITHEKCPCGVPSRSTIELPLLEVGLGKAYIEVLVANDQSKRVLHVQSISCWAPSCI 361
YVKFIT EKCP GVPSRSTIELPL++ GLGKAYIEVLVAND+SKRVLHVQSISCWAPSCI
Sbjct: 369 YVKFITQEKCPFGVPSRSTIELPLVQAGLGKAYIEVLVANDESKRVLHVQSISCWAPSCI 428
Query: 362 GPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNSEAVAKCFNCSISTSAI 421
GPYSQATLH+ VL MAGQLGLDPPTM L G EL QAL NSEA+A+ FNCSIS+SAI
Sbjct: 429 GPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISSSAI 488
Query: 422 YFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLDPIFLFVLASNLPKSAL 481
FVV+CS SER ++ EK FL + R + VLDP+FL++L +LPK AL
Sbjct: 489 LFVVFCSARTKQSERNQLHEKFVTFLGLAK----SSRRVQNVLDPMFLYILVPDLPKRAL 544
Query: 482 VEIKPILYVTDDSETVSEIVQDLSCMKAPLHWGFQHADWHESCFQKCVVHEKICAVILSI 541
VE+KPILYV +D++T E +D S WG++ WH+ C QK VV K+C +LSI
Sbjct: 545 VEVKPILYVEEDTDTEDETSRDQSGEGHYSIWGYKPEKWHQDCVQKRVVDGKVCVAVLSI 604
Query: 542 TCEIAARICSE 552
+ E+ ++ E
Sbjct: 605 SAELMRKLQGE 615
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| ZFIN|ZDB-GENE-050227-15 atpbd4 "ATP binding domain 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0278373 DDB_G0278373 "endoribonuclease L-PSP domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPBC577.12 mug71 "diphthamide synthetase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1913882 Atpbd4 "ATP binding domain 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1310006 Atpbd4 "ATP binding domain 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q7L8W6 ATPBD4 "Diphthine--ammonia ligase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q2HJF5 ATPBD4 "Diphthine--ammonia ligase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0002720 orf19.839 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5AHF8 CaO19.839 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 667 | |||
| cd01994 | 194 | cd01994, Alpha_ANH_like_IV, This is a subfamily of | 1e-55 | |
| COG2102 | 223 | COG2102, COG2102, Predicted ATPases of PP-loop sup | 1e-42 | |
| TIGR03679 | 218 | TIGR03679, arCOG00187, arCOG00187 universal archae | 5e-38 | |
| TIGR00290 | 223 | TIGR00290, MJ0570_dom, MJ0570-related uncharacteri | 5e-35 | |
| pfam01902 | 220 | pfam01902, ATP_bind_4, ATP-binding region | 2e-27 | |
| TIGR00289 | 222 | TIGR00289, TIGR00289, TIGR00289 family protein | 3e-24 | |
| cd06156 | 118 | cd06156, eu_AANH_C_2, A group of hypothetical euka | 4e-23 | |
| cd06155 | 101 | cd06155, eu_AANH_C_1, A group of hypothetical euka | 2e-17 | |
| TIGR00004 | 124 | TIGR00004, TIGR00004, reactive intermediate/imine | 1e-11 | |
| pfam01042 | 120 | pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP | 2e-10 | |
| cd00448 | 107 | cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, | 7e-09 | |
| TIGR00004 | 124 | TIGR00004, TIGR00004, reactive intermediate/imine | 4e-06 | |
| cd06150 | 105 | cd06150, YjgF_YER057c_UK114_like_2, This group of | 4e-06 | |
| pfam01042 | 120 | pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP | 6e-06 | |
| cd00448 | 107 | cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, | 7e-06 | |
| COG0251 | 130 | COG0251, TdcF, Putative translation initiation inh | 1e-05 | |
| COG0251 | 130 | COG0251, TdcF, Putative translation initiation inh | 2e-04 | |
| PRK11401 | 129 | PRK11401, PRK11401, putative endoribonuclease L-PS | 2e-04 | |
| cd06151 | 126 | cd06151, YjgF_YER057c_UK114_like_3, This group of | 0.001 |
| >gnl|CDD|238952 cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 1e-55
Identities = 71/129 (55%), Positives = 85/129 (65%), Gaps = 3/129 (2%)
Query: 11 TPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQ 70
DEVED+ LL ++K + V AV GAI S+YQR RVE VC RLGL LA LW +DQ
Sbjct: 69 EEEDEVEDLKELLRKLKEE--GVDAVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQ 126
Query: 71 SLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEYE 130
LL+EMI G AI +KVAA GL+ LG+EI + L +L E YG++ CGEGGEYE
Sbjct: 127 EELLREMIEAGFKAIIIKVAAEGLDE-SWLGREIDEMFIELLELNEKYGVDPCGEGGEYE 185
Query: 131 TLTLDCPLF 139
TL LD PLF
Sbjct: 186 TLVLDGPLF 194
|
Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus. Length = 194 |
| >gnl|CDD|225013 COG2102, COG2102, Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|188368 TIGR03679, arCOG00187, arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >gnl|CDD|232907 TIGR00290, MJ0570_dom, MJ0570-related uncharacterized domain | Back alignment and domain information |
|---|
| >gnl|CDD|202036 pfam01902, ATP_bind_4, ATP-binding region | Back alignment and domain information |
|---|
| >gnl|CDD|129390 TIGR00289, TIGR00289, TIGR00289 family protein | Back alignment and domain information |
|---|
| >gnl|CDD|100013 cd06156, eu_AANH_C_2, A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >gnl|CDD|100012 cd06155, eu_AANH_C_1, A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >gnl|CDD|129116 TIGR00004, TIGR00004, reactive intermediate/imine deaminase | Back alignment and domain information |
|---|
| >gnl|CDD|216262 pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP | Back alignment and domain information |
|---|
| >gnl|CDD|100004 cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >gnl|CDD|129116 TIGR00004, TIGR00004, reactive intermediate/imine deaminase | Back alignment and domain information |
|---|
| >gnl|CDD|100007 cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >gnl|CDD|216262 pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP | Back alignment and domain information |
|---|
| >gnl|CDD|100004 cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >gnl|CDD|223329 COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|223329 COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|105214 PRK11401, PRK11401, putative endoribonuclease L-PSP; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100008 cd06151, YjgF_YER057c_UK114_like_3, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| KOG2316 | 277 | consensus Predicted ATPase (PP-loop superfamily) [ | 100.0 | |
| TIGR00290 | 223 | MJ0570_dom MJ0570-related uncharacterized domain. | 100.0 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 100.0 | |
| TIGR00289 | 222 | conserved hypothetical protein TIGR00289. Homologo | 100.0 | |
| PF01902 | 218 | ATP_bind_4: ATP-binding region; InterPro: IPR00276 | 100.0 | |
| TIGR03679 | 218 | arCOG00187 arCOG00187 universal archaeal metal-bin | 100.0 | |
| cd01994 | 194 | Alpha_ANH_like_IV This is a subfamily of Adenine n | 100.0 | |
| KOG2317 | 138 | consensus Putative translation initiation inhibito | 99.93 | |
| COG0251 | 130 | TdcF Putative translation initiation inhibitor, yj | 99.91 | |
| TIGR00004 | 124 | endoribonuclease L-PSP, putative. This protein was | 99.91 | |
| PRK11401 | 129 | putative endoribonuclease L-PSP; Provisional | 99.9 | |
| PF01042 | 121 | Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: I | 99.9 | |
| TIGR03610 | 127 | RutC pyrimidine utilization protein C. This protei | 99.9 | |
| cd06154 | 119 | YjgF_YER057c_UK114_like_6 This group of proteins b | 99.88 | |
| cd06152 | 114 | YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 | 99.88 | |
| cd06156 | 118 | eu_AANH_C_2 A group of hypothetical eukaryotic pro | 99.87 | |
| cd02199 | 142 | YjgF_YER057c_UK114_like_1 This group of proteins b | 99.85 | |
| cd02198 | 111 | YjgH_like YjgH belongs to a large family of YjgF/Y | 99.84 | |
| cd06150 | 105 | YjgF_YER057c_UK114_like_2 This group of proteins b | 99.84 | |
| cd00448 | 107 | YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 | 99.8 | |
| cd06153 | 114 | YjgF_YER057c_UK114_like_5 This group of proteins b | 99.79 | |
| cd06151 | 126 | YjgF_YER057c_UK114_like_3 This group of proteins b | 99.75 | |
| cd06155 | 101 | eu_AANH_C_1 A group of hypothetical eukaryotic pro | 99.74 | |
| cd06155 | 101 | eu_AANH_C_1 A group of hypothetical eukaryotic pro | 99.64 | |
| cd06150 | 105 | YjgF_YER057c_UK114_like_2 This group of proteins b | 99.62 | |
| cd06152 | 114 | YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 | 99.56 | |
| COG0251 | 130 | TdcF Putative translation initiation inhibitor, yj | 99.56 | |
| TIGR03610 | 127 | RutC pyrimidine utilization protein C. This protei | 99.55 | |
| PRK11401 | 129 | putative endoribonuclease L-PSP; Provisional | 99.5 | |
| cd06154 | 119 | YjgF_YER057c_UK114_like_6 This group of proteins b | 99.49 | |
| PF01042 | 121 | Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: I | 99.49 | |
| cd02198 | 111 | YjgH_like YjgH belongs to a large family of YjgF/Y | 99.47 | |
| TIGR00004 | 124 | endoribonuclease L-PSP, putative. This protein was | 99.46 | |
| cd00448 | 107 | YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 | 99.44 | |
| cd06151 | 126 | YjgF_YER057c_UK114_like_3 This group of proteins b | 99.4 | |
| cd02199 | 142 | YjgF_YER057c_UK114_like_1 This group of proteins b | 99.39 | |
| cd06156 | 118 | eu_AANH_C_2 A group of hypothetical eukaryotic pro | 99.39 | |
| cd06153 | 114 | YjgF_YER057c_UK114_like_5 This group of proteins b | 99.37 | |
| PF14588 | 148 | YjgF_endoribonc: YjgF/chorismate_mutase-like, puta | 99.37 | |
| KOG2317 | 138 | consensus Putative translation initiation inhibito | 98.92 | |
| TIGR00032 | 394 | argG argininosuccinate synthase. argG in bacteria, | 98.09 | |
| cd01995 | 169 | ExsB ExsB is a transcription regulator related pro | 95.25 | |
| PF14588 | 148 | YjgF_endoribonc: YjgF/chorismate_mutase-like, puta | 89.82 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 85.94 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 82.06 |
| >KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=456.15 Aligned_cols=174 Identities=65% Similarity=1.048 Sum_probs=170.4
Q ss_pred cccceeEecCCcchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCC
Q 005967 2 RHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNG 81 (667)
Q Consensus 2 ~~q~~~y~~~~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g 81 (667)
+||++.|..|++||+||||.+|+++|+++|.++||++|||+|+|||+|||+||+||||++|+|||+|||++||+||+.+|
T Consensus 77 ~nq~l~Y~~t~~DEvEDLy~ll~~VK~~~p~~eaVS~GAIlS~YQr~RVEnVC~RL~L~~Ls~LW~rdQ~~LL~eMi~~g 156 (277)
T KOG2316|consen 77 INQKLQYTKTEGDEVEDLYELLKTVKEKIPDVEAVSVGAILSDYQRTRVENVCSRLGLVSLSYLWQRDQEELLQEMILSG 156 (277)
T ss_pred cccccccccCCCchHHHHHHHHHHHHhhCCCceeeehhhhHhHHHHHHHHHHHhhhCceeehHHHhccHHHHHHHHHHcC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEeCCCCCCccccCcccccchHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccc
Q 005967 82 INAITVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAP 161 (667)
Q Consensus 82 ~~a~ii~V~~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~ 161 (667)
++|||||||+.||+. +||||+|++|.+.|.+|+++||+|+|||||||||||+|||+|+ |||++++.+++.|++|.++|
T Consensus 157 ~~AiiiKVAAigL~~-khLgksL~em~p~L~~l~~ky~vh~CGEGGEyET~vlDcPlF~-krivld~~evv~hs~~~~~~ 234 (277)
T KOG2316|consen 157 LDAIIIKVAAIGLGR-KHLGKSLDEMQPYLLKLNDKYGVHVCGEGGEYETFVLDCPLFK-KRIVLDEYEVVIHSADEVCP 234 (277)
T ss_pred CCeEEEEEeecccCh-hhhCcCHHHHHHHHHHhhhhhCceecCCCcceeEEEecccchh-heeeeeeeEEeecCccCccc
Confidence 999999999999995 7999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred eeeEEeeeeEEEeccC
Q 005967 162 VGVLHPLAFHLEYKAG 177 (667)
Q Consensus 162 ~~~l~~~~~~l~~k~~ 177 (667)
++|+++.+.+|+.|..
T Consensus 235 ~~v~~~~k~~l~~k~~ 250 (277)
T KOG2316|consen 235 VGVLRFLKLHLEKKHV 250 (277)
T ss_pred eeEEeeeecccccccc
Confidence 9999999999999854
|
|
| >TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain | Back alignment and domain information |
|---|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00289 conserved hypothetical protein TIGR00289 | Back alignment and domain information |
|---|
| >PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal | Back alignment and domain information |
|---|
| >TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
| >KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00004 endoribonuclease L-PSP, putative | Back alignment and domain information |
|---|
| >PRK11401 putative endoribonuclease L-PSP; Provisional | Back alignment and domain information |
|---|
| >PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA [] | Back alignment and domain information |
|---|
| >TIGR03610 RutC pyrimidine utilization protein C | Back alignment and domain information |
|---|
| >cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03610 RutC pyrimidine utilization protein C | Back alignment and domain information |
|---|
| >PRK11401 putative endoribonuclease L-PSP; Provisional | Back alignment and domain information |
|---|
| >cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA [] | Back alignment and domain information |
|---|
| >cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >TIGR00004 endoribonuclease L-PSP, putative | Back alignment and domain information |
|---|
| >cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D | Back alignment and domain information |
|---|
| >KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00032 argG argininosuccinate synthase | Back alignment and domain information |
|---|
| >cd01995 ExsB ExsB is a transcription regulator related protein | Back alignment and domain information |
|---|
| >PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D | Back alignment and domain information |
|---|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 667 | ||||
| 2d13_A | 227 | Crystal Structure Of Ph1257 From Pyrococcus Horikos | 4e-18 | ||
| 3rjz_A | 237 | X-Ray Crystal Structure Of The Putative N-Type Atp | 2e-14 | ||
| 1oni_A | 138 | Crystal Structure Of A Human P14.5, A Translational | 8e-08 | ||
| 1nq3_A | 136 | Crystal Structure Of The Mammalian Tumor Associated | 2e-07 | ||
| 1x25_A | 128 | Crystal Structure Of A Member Of Yjgf Family From S | 7e-07 | ||
| 1qah_A | 136 | Crystal Structure Of Perchloric Acid Soluble Protei | 2e-06 | ||
| 2dyy_A | 126 | Crystal Structure Of Putative Translation Initiatio | 3e-06 | ||
| 1xrg_A | 156 | Conserved Hypothetical Protein From Clostridium The | 4e-05 | ||
| 2b33_A | 140 | Crystal Structure Of A Putative Endoribonuclease (t | 8e-05 | ||
| 3r0p_A | 127 | Crystal Structure Of L-Psp Putative Endoribonucleas | 1e-04 | ||
| 2uyj_A | 129 | Crystal Structure Of E. Coli Tdcf With Bound Ethyle | 4e-04 | ||
| 2uyn_A | 129 | Crystal Structure Of E. Coli Tdcf With Bound 2-Keto | 6e-04 | ||
| 1qd9_A | 124 | Bacillus Subtilis Yabj Length = 124 | 6e-04 |
| >pdb|2D13|A Chain A, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|3RJZ|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp Pyrophosphatase From Pyrococcus Furiosus, The Northeast Structural Genomics Target Pfr23 Length = 237 | Back alignment and structure |
| >pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational Inhibitor Reveals Different Mode Of Ligand Binding Near The Invariant Residues Of The Yjgf/uk114 Protein Family Length = 138 | Back alignment and structure |
| >pdb|1NQ3|A Chain A, Crystal Structure Of The Mammalian Tumor Associated Antigen Uk114 Length = 136 | Back alignment and structure |
| >pdb|1X25|A Chain A, Crystal Structure Of A Member Of Yjgf Family From Sulfolobus Tokodaii (st0811) Length = 128 | Back alignment and structure |
| >pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A Translational Inhibitor Length = 136 | Back alignment and structure |
| >pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation Inhibitor Ph0854 From Pyrococcus Horikoshii Length = 126 | Back alignment and structure |
| >pdb|1XRG|A Chain A, Conserved Hypothetical Protein From Clostridium Thermocellum Cth-2968 Length = 156 | Back alignment and structure |
| >pdb|2B33|A Chain A, Crystal Structure Of A Putative Endoribonuclease (tm0215) From Thermotoga Maritima Msb8 At 2.30 A Resolution Length = 140 | Back alignment and structure |
| >pdb|3R0P|A Chain A, Crystal Structure Of L-Psp Putative Endoribonuclease From Uncultured Organism Length = 127 | Back alignment and structure |
| >pdb|2UYJ|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Ethylene Glycol Length = 129 | Back alignment and structure |
| >pdb|2UYN|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound 2-Ketobutyrate Length = 129 | Back alignment and structure |
| >pdb|1QD9|A Chain A, Bacillus Subtilis Yabj Length = 124 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Length = 237 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 6e-42
Identities = 55/170 (32%), Positives = 78/170 (45%), Gaps = 7/170 (4%)
Query: 8 YRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWK 67
+ E E L V + + +GA+AS YQR R+E V LGL W
Sbjct: 67 VKGFTQGEKEKEVEDLKRVLSG-LKIQGIVAGALASKYQRKRIEKVAKELGLEVYTPAWG 125
Query: 68 QDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEI-AFLDPYLHKLKESYGINVCGEG 126
+D ++E++ G + V V+A GL+ LG+ + L L E Y ++V GEG
Sbjct: 126 RDAKEYMRELLNLGFKIMVVGVSAYGLDE-SWLGRILDESALEELITLNEKYKVHVAGEG 184
Query: 127 GEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAFHLEYKA 176
GE+ET LD PLF +IV+D+ + V G L HLE K
Sbjct: 185 GEFETFVLDMPLF-KYKIVVDKAKKVWE---PCTSSGKLIIEEAHLESKL 230
|
| >2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1 Length = 123 | Back alignment and structure |
|---|
| >2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1 Length = 123 | Back alignment and structure |
|---|
| >3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} Length = 127 | Back alignment and structure |
|---|
| >3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} Length = 127 | Back alignment and structure |
|---|
| >1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A Length = 136 | Back alignment and structure |
|---|
| >1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A Length = 136 | Back alignment and structure |
|---|
| >3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6} Length = 134 | Back alignment and structure |
|---|
| >3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6} Length = 134 | Back alignment and structure |
|---|
| >3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} Length = 125 | Back alignment and structure |
|---|
| >3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} Length = 125 | Back alignment and structure |
|---|
| >3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A* Length = 148 | Back alignment and structure |
|---|
| >3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A* Length = 148 | Back alignment and structure |
|---|
| >2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1 Length = 140 | Back alignment and structure |
|---|
| >2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1 Length = 140 | Back alignment and structure |
|---|
| >2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 126 | Back alignment and structure |
|---|
| >2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 126 | Back alignment and structure |
|---|
| >1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1 Length = 128 | Back alignment and structure |
|---|
| >1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1 Length = 128 | Back alignment and structure |
|---|
| >1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1 Length = 156 | Back alignment and structure |
|---|
| >1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1 Length = 156 | Back alignment and structure |
|---|
| >3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} Length = 138 | Back alignment and structure |
|---|
| >3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} Length = 138 | Back alignment and structure |
|---|
| >1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1 Length = 124 | Back alignment and structure |
|---|
| >1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1 Length = 124 | Back alignment and structure |
|---|
| >3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV} Length = 143 | Back alignment and structure |
|---|
| >3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV} Length = 143 | Back alignment and structure |
|---|
| >3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus} Length = 153 | Back alignment and structure |
|---|
| >3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus} Length = 153 | Back alignment and structure |
|---|
| >3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae} Length = 153 | Back alignment and structure |
|---|
| >3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae} Length = 153 | Back alignment and structure |
|---|
| >1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A Length = 128 | Back alignment and structure |
|---|
| >1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A Length = 128 | Back alignment and structure |
|---|
| >1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1 Length = 129 | Back alignment and structure |
|---|
| >1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1 Length = 129 | Back alignment and structure |
|---|
| >2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A Length = 124 | Back alignment and structure |
|---|
| >2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A Length = 124 | Back alignment and structure |
|---|
| >1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1 Length = 131 | Back alignment and structure |
|---|
| >1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1 Length = 131 | Back alignment and structure |
|---|
| >2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa} Length = 144 | Back alignment and structure |
|---|
| >2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa} Length = 144 | Back alignment and structure |
|---|
| >3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia} Length = 141 | Back alignment and structure |
|---|
| >3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia} Length = 141 | Back alignment and structure |
|---|
| >3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis} Length = 149 | Back alignment and structure |
|---|
| >3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis} Length = 149 | Back alignment and structure |
|---|
| >3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium} Length = 124 | Back alignment and structure |
|---|
| >3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa} Length = 122 | Back alignment and structure |
|---|
| >3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa} Length = 122 | Back alignment and structure |
|---|
| >3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A Length = 128 | Back alignment and structure |
|---|
| >3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A Length = 128 | Back alignment and structure |
|---|
| >3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae} Length = 165 | Back alignment and structure |
|---|
| >3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae} Length = 165 | Back alignment and structure |
|---|
| >2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1 Length = 126 | Back alignment and structure |
|---|
| >2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1 Length = 126 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| 3rjz_A | 237 | N-type ATP pyrophosphatase superfamily; structural | 100.0 | |
| 2b33_A | 140 | Protein synthesis inhibitor, putative; putative en | 99.94 | |
| 3r0p_A | 127 | L-PSP putative endoribonuclease; hydrolase; 1.90A | 99.94 | |
| 1x25_A | 128 | Hypothetical UPF0076 protein ST0811; YJGF-like pro | 99.93 | |
| 2cvl_A | 124 | TTHA0137, protein translation initiation inhibitor | 99.93 | |
| 3l7q_A | 125 | Putative translation initiation inhibitor, ALDR R | 99.93 | |
| 2dyy_A | 126 | UPF0076 protein PH0854; putative translation initi | 99.93 | |
| 1qd9_A | 124 | Purine regulatory protein YABJ; perchloric acid so | 99.93 | |
| 1qah_A | 136 | Perchloric acid soluble protein; alpha-beta struct | 99.93 | |
| 3k0t_A | 143 | Endoribonuclease L-PSP, putative; glucose binding, | 99.93 | |
| 3m1x_A | 148 | Putative endoribonuclease L-PSP; structural genomi | 99.93 | |
| 1qu9_A | 128 | YJGF protein; structural genomics; HET: CSP; 1.20A | 99.93 | |
| 1xrg_A | 156 | Putative translation initiation inhibitor, YJGF fa | 99.92 | |
| 1jd1_A | 129 | Hypothetical 13.9 kDa protein in FCY2-PET117 inter | 99.92 | |
| 3v4d_A | 134 | Aminoacrylate peracid reductase RUTC; structural g | 99.92 | |
| 3lyb_A | 165 | Putative endoribonuclease; structural genomics, PS | 99.92 | |
| 2cwj_A | 123 | Putative endonuclease; hydrolase, endoribonucrease | 99.92 | |
| 3vcz_A | 153 | Endoribonuclease L-PSP; virulence, pathogenesis, i | 99.92 | |
| 3quw_A | 153 | Protein MMF1; chorismate mutase fold, intact mitoc | 99.92 | |
| 3lme_A | 138 | Possible translation initiation inhibitor; structu | 99.91 | |
| 2ig8_A | 144 | Hypothetical protein PA3499; structural genomics, | 99.9 | |
| 1pf5_A | 131 | Hypothetical protein YJGH; structural genomics, be | 99.9 | |
| 3kjj_A | 128 | NMB1025 protein; YJGF protein family, OPPF, struct | 99.88 | |
| 3i7t_A | 149 | RV2704, putative uncharacterized protein; siras, Y | 99.87 | |
| 3d01_A | 165 | Uncharacterized protein; protein with unknown func | 99.87 | |
| 3i3f_A | 141 | Hypothetical protein; structural genomics, niaid, | 99.87 | |
| 2ewc_A | 126 | Conserved hypothetical protein; YJGF proteins fami | 99.86 | |
| 2otm_A | 154 | Hypothetical protein; structural genomics, joint c | 99.86 | |
| 3k12_A | 122 | Uncharacterized protein A6V7T0; structural genomic | 99.86 | |
| 3gtz_A | 124 | Putative translation initiation inhibitor; structu | 99.85 | |
| 3k12_A | 122 | Uncharacterized protein A6V7T0; structural genomic | 99.62 | |
| 3kjj_A | 128 | NMB1025 protein; YJGF protein family, OPPF, struct | 99.61 | |
| 3gtz_A | 124 | Putative translation initiation inhibitor; structu | 99.6 | |
| 2ewc_A | 126 | Conserved hypothetical protein; YJGF proteins fami | 99.6 | |
| 3v4d_A | 134 | Aminoacrylate peracid reductase RUTC; structural g | 99.58 | |
| 1jd1_A | 129 | Hypothetical 13.9 kDa protein in FCY2-PET117 inter | 99.58 | |
| 3quw_A | 153 | Protein MMF1; chorismate mutase fold, intact mitoc | 99.58 | |
| 3i7t_A | 149 | RV2704, putative uncharacterized protein; siras, Y | 99.57 | |
| 2dyy_A | 126 | UPF0076 protein PH0854; putative translation initi | 99.57 | |
| 1qah_A | 136 | Perchloric acid soluble protein; alpha-beta struct | 99.57 | |
| 2cwj_A | 123 | Putative endonuclease; hydrolase, endoribonucrease | 99.56 | |
| 1qu9_A | 128 | YJGF protein; structural genomics; HET: CSP; 1.20A | 99.56 | |
| 3l7q_A | 125 | Putative translation initiation inhibitor, ALDR R | 99.56 | |
| 1qd9_A | 124 | Purine regulatory protein YABJ; perchloric acid so | 99.56 | |
| 2b33_A | 140 | Protein synthesis inhibitor, putative; putative en | 99.56 | |
| 2cvl_A | 124 | TTHA0137, protein translation initiation inhibitor | 99.56 | |
| 1x25_A | 128 | Hypothetical UPF0076 protein ST0811; YJGF-like pro | 99.56 | |
| 3r0p_A | 127 | L-PSP putative endoribonuclease; hydrolase; 1.90A | 99.55 | |
| 3k0t_A | 143 | Endoribonuclease L-PSP, putative; glucose binding, | 99.55 | |
| 1pf5_A | 131 | Hypothetical protein YJGH; structural genomics, be | 99.54 | |
| 2ig8_A | 144 | Hypothetical protein PA3499; structural genomics, | 99.54 | |
| 3vcz_A | 153 | Endoribonuclease L-PSP; virulence, pathogenesis, i | 99.54 | |
| 3m1x_A | 148 | Putative endoribonuclease L-PSP; structural genomi | 99.53 | |
| 1xrg_A | 156 | Putative translation initiation inhibitor, YJGF fa | 99.53 | |
| 3lme_A | 138 | Possible translation initiation inhibitor; structu | 99.5 | |
| 3lyb_A | 165 | Putative endoribonuclease; structural genomics, PS | 99.49 | |
| 3i3f_A | 141 | Hypothetical protein; structural genomics, niaid, | 99.44 | |
| 2otm_A | 154 | Hypothetical protein; structural genomics, joint c | 99.31 | |
| 3d01_A | 165 | Uncharacterized protein; protein with unknown func | 99.3 | |
| 1k92_A | 455 | Argininosuccinate synthase, argininosuccinate SY; | 92.75 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 84.89 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 81.72 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 80.62 | |
| 1kor_A | 400 | Argininosuccinate synthetase; ligase, riken struct | 80.25 |
| >3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=372.30 Aligned_cols=155 Identities=36% Similarity=0.559 Sum_probs=138.7
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeCC
Q 005967 13 GDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAM 92 (667)
Q Consensus 13 ~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~~ 92 (667)
++|+|+|+++|+++ ||++|++|||+|+|||.|+|++|.|+||++++|||++||++||+||+++||+|+||||++.
T Consensus 76 ~~e~e~l~~~l~~~-----~i~~vv~Gdi~s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~~ 150 (237)
T 3rjz_A 76 EKEVEDLKRVLSGL-----KIQGIVAGALASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVSAY 150 (237)
T ss_dssp --CHHHHHHHHTTS-----CCSEEECC---CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEEEST
T ss_pred hHHHHHHHHHHHhc-----CCcEEEECCcchHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEEecC
Confidence 56899999988765 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCccccc-chHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccceeeEEeeeeE
Q 005967 93 GLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAFH 171 (667)
Q Consensus 93 gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~~~~l~~~~~~ 171 (667)
|||+ +||||+|++ +.+.|.+|+++||+|||||||||||||+|||+|+ +||+|++.++++++++ .+||+.|++++
T Consensus 151 gL~~-~~lG~~l~~~~~~~L~~l~~~~gvd~cGEgGEfhT~V~d~PlF~-~~i~i~~~e~v~~~~~---~~~~~~i~~a~ 225 (237)
T 3rjz_A 151 GLDE-SWLGRILDESALEELITLNEKYKVHVAGEGGEFETFVLDMPLFK-YKIVVDKAKKVWEPCT---SSGKLIIEEAH 225 (237)
T ss_dssp TCCG-GGTTCBCCHHHHHHHHHHHHHHCCCTTCTTTTEEEEEEECTTCS-EEEEEEEEEEC--CCS---SEEEEEEEEEE
T ss_pred CCCh-HHCCCccCHHHHHHHHHHHhhcCccccCCCceeEEEEEecCccc-eeeEEEEEEEEEecCC---cEEEEEEEEEE
Confidence 9998 699999996 7888999999999999999999999999999999 5999999999998531 47999999999
Q ss_pred EEeccC
Q 005967 172 LEYKAG 177 (667)
Q Consensus 172 l~~k~~ 177 (667)
|++|-+
T Consensus 226 l~~~~~ 231 (237)
T 3rjz_A 226 LESKLE 231 (237)
T ss_dssp EEECCC
T ss_pred Eeehhh
Confidence 999943
|
| >2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0 | Back alignment and structure |
|---|
| >1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A | Back alignment and structure |
|---|
| >3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0 | Back alignment and structure |
|---|
| >2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A | Back alignment and structure |
|---|
| >3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A* | Back alignment and structure |
|---|
| >1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A | Back alignment and structure |
|---|
| >1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6} | Back alignment and structure |
|---|
| >3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
| >2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0 | Back alignment and structure |
|---|
| >2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A | Back alignment and structure |
|---|
| >3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia} | Back alignment and structure |
|---|
| >2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A | Back alignment and structure |
|---|
| >3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6} | Back alignment and structure |
|---|
| >1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A | Back alignment and structure |
|---|
| >2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A | Back alignment and structure |
|---|
| >3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0 | Back alignment and structure |
|---|
| >1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A | Back alignment and structure |
|---|
| >1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0 | Back alignment and structure |
|---|
| >3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A* | Back alignment and structure |
|---|
| >1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0 | Back alignment and structure |
|---|
| >3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
| >3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia} | Back alignment and structure |
|---|
| >2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1 | Back alignment and structure |
|---|
| >3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* | Back alignment and structure |
|---|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 667 | ||||
| d2d13a1 | 226 | c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Ar | 2e-42 | |
| d2cwja1 | 116 | d.79.1.1 (A:4-119) Putative endonuclease APE1501 { | 4e-11 | |
| d1qaha_ | 132 | d.79.1.1 (A:) 14.5 kda translational inhibitor pro | 2e-10 | |
| d1x25a1 | 124 | d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Su | 3e-10 | |
| d1xrga_ | 125 | d.79.1.1 (A:) Purine regulatory protein YabJ {Clos | 2e-09 | |
| d2b33a1 | 126 | d.79.1.1 (A:2-127) Putative protein synthesis inhi | 3e-08 | |
| d2cvla1 | 124 | d.79.1.1 (A:1-124) Putative translation intiation | 2e-07 | |
| d1qu9a_ | 127 | d.79.1.1 (A:) Conserved 'hypothetical' protein Yjg | 2e-07 | |
| d2otma1 | 152 | d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Sh | 7e-07 | |
| d1qd9a_ | 124 | d.79.1.1 (A:) Purine regulatory protein YabJ {Baci | 2e-05 | |
| d1jd1a_ | 126 | d.79.1.1 (A:) Highdosage growth inhibitor YER057cp | 3e-05 | |
| d1pf5a_ | 130 | d.79.1.1 (A:) Hypothetical protein YjgH {Escherich | 0.002 |
| >d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Hypothetical protein PH1257 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 151 bits (382), Expect = 2e-42
Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 13/163 (7%)
Query: 14 DEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLL 73
EVED+ +L +K + +GA+AS YQ+ R+E+V LGL W++D
Sbjct: 76 KEVEDLKNVLEGLKVD-----GIVAGALASRYQKERIENVARELGLKVYTPAWEKDPYQY 130
Query: 74 LQEMITNGINAITVKVAAMGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETL 132
+ E+I G + V V+A GL LG+E+ + L KL E YGI++ GEGGE+ET
Sbjct: 131 MLEIIKLGFKVVFVAVSAYGL-NESWLGRELNYKNLEELKKLSEKYGIHIAGEGGEFETF 189
Query: 133 TLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAFHLEYK 175
LD P F A+IV+D+ + G HLE+K
Sbjct: 190 VLDMPFF-KAKIVIDDAEKFWDGLS-----GKFIIKRAHLEWK 226
|
| >d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum pernix [TaxId: 56636]} Length = 116 | Back information, alignment and structure |
|---|
| >d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
| >d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus tokodaii [TaxId: 111955]} Length = 124 | Back information, alignment and structure |
|---|
| >d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]} Length = 125 | Back information, alignment and structure |
|---|
| >d2b33a1 d.79.1.1 (A:2-127) Putative protein synthesis inhibitor TM0215 {Thermotoga maritima [TaxId: 2336]} Length = 126 | Back information, alignment and structure |
|---|
| >d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]} Length = 124 | Back information, alignment and structure |
|---|
| >d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF {Escherichia coli [TaxId: 562]} Length = 127 | Back information, alignment and structure |
|---|
| >d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]} Length = 152 | Back information, alignment and structure |
|---|
| >d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]} Length = 124 | Back information, alignment and structure |
|---|
| >d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 126 | Back information, alignment and structure |
|---|
| >d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli [TaxId: 562]} Length = 130 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| d2d13a1 | 226 | Hypothetical protein PH1257 {Archaeon Pyrococcus h | 100.0 | |
| d1x25a1 | 124 | Hypothetical protein ST0811 {Sulfolobus tokodaii [ | 99.93 | |
| d1qu9a_ | 127 | Conserved 'hypothetical' protein YjgF {Escherichia | 99.93 | |
| d1jd1a_ | 126 | Highdosage growth inhibitor YER057cp (YEO7_YEAST) | 99.93 | |
| d2b33a1 | 126 | Putative protein synthesis inhibitor TM0215 {Therm | 99.93 | |
| d2cvla1 | 124 | Putative translation intiation inhibitor TTHA0137 | 99.92 | |
| d1qd9a_ | 124 | Purine regulatory protein YabJ {Bacillus subtilis | 99.92 | |
| d1qaha_ | 132 | 14.5 kda translational inhibitor protein, L-PSP {R | 99.92 | |
| d2cwja1 | 116 | Putative endonuclease APE1501 {Aeropyrum pernix [T | 99.92 | |
| d1xrga_ | 125 | Purine regulatory protein YabJ {Clostridium thermo | 99.92 | |
| d1pf5a_ | 130 | Hypothetical protein YjgH {Escherichia coli [TaxId | 99.85 | |
| d2ewca1 | 120 | Hypothetical protein SPy2060 {Streptococcus pyogen | 99.8 | |
| d2otma1 | 152 | Hypothetical protein SO1960 {Shewanella oneidensis | 99.79 | |
| d2ewca1 | 120 | Hypothetical protein SPy2060 {Streptococcus pyogen | 99.61 | |
| d1qu9a_ | 127 | Conserved 'hypothetical' protein YjgF {Escherichia | 99.52 | |
| d2cvla1 | 124 | Putative translation intiation inhibitor TTHA0137 | 99.52 | |
| d2b33a1 | 126 | Putative protein synthesis inhibitor TM0215 {Therm | 99.5 | |
| d1x25a1 | 124 | Hypothetical protein ST0811 {Sulfolobus tokodaii [ | 99.49 | |
| d1xrga_ | 125 | Purine regulatory protein YabJ {Clostridium thermo | 99.49 | |
| d1qd9a_ | 124 | Purine regulatory protein YabJ {Bacillus subtilis | 99.49 | |
| d1jd1a_ | 126 | Highdosage growth inhibitor YER057cp (YEO7_YEAST) | 99.49 | |
| d2cwja1 | 116 | Putative endonuclease APE1501 {Aeropyrum pernix [T | 99.46 | |
| d1qaha_ | 132 | 14.5 kda translational inhibitor protein, L-PSP {R | 99.38 | |
| d1pf5a_ | 130 | Hypothetical protein YjgH {Escherichia coli [TaxId | 99.26 | |
| d2otma1 | 152 | Hypothetical protein SO1960 {Shewanella oneidensis | 98.59 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 80.97 |
| >d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Hypothetical protein PH1257 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.5e-43 Score=350.25 Aligned_cols=152 Identities=38% Similarity=0.620 Sum_probs=140.1
Q ss_pred CcchHHHHHHHHHHHHhhCCCceEEEEcccccHHHHHHHHHhhhhcCCEEeecCccCCHHHHHHHHHHCCCeEEEEEEeC
Q 005967 12 PGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAA 91 (667)
Q Consensus 12 ~~dE~e~l~~~L~~~k~~~p~v~~v~~GaI~s~yqr~rve~vc~~lgl~~l~pLW~~~~~~ll~em~~~g~~a~ii~V~~ 91 (667)
.++|+++|+.+|+++ ++++|+||||+|+|||.|+|++|.++||++++|||++||++||++|+++||+|+|++|++
T Consensus 74 ~e~~~~~l~~~l~~~-----~v~~vv~Gdi~~~~~r~r~e~~c~~~gl~~~~PLW~~d~~~ll~e~i~~G~~aii~~v~~ 148 (226)
T d2d13a1 74 KEKEVEDLKNVLEGL-----KVDGIVAGALASRYQKERIENVARELGLKVYTPAWEKDPYQYMLEIIKLGFKVVFVAVSA 148 (226)
T ss_dssp TTSHHHHHHHHHHTB-----CCSEEECCCSSCHHHHHHHHHHHHHHTCEEECTTTTCCHHHHHHHHHHTTCEEEEEEECS
T ss_pred chHHHHHHHHHHHhc-----CccceEecceecHHHHHHHHhhHHhcCcEEEecccCCCHHHHHHHHHHCCCcEEEEEEcc
Confidence 457777777777543 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCccccc-chHHHHHhhhhcCCccccCCceeEEEeecCCCCCCceeEEeeeEEEEcCCCCccceeeEEeeee
Q 005967 92 MGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVLHPLAF 170 (667)
Q Consensus 92 ~gL~~~~~lG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeT~vlD~PlF~~~ri~i~~~~~v~~~~~~~~~~~~l~~~~~ 170 (667)
.||++ +||||+|++ +.+.|.+++++||+|||||||||||||+|||+|++ ||+|++.+++|+. ..||+.|+++
T Consensus 149 ~gL~~-~~lGr~id~~~~~~L~~~~~~~gvdp~GE~GEfhT~V~d~PlF~~-~i~i~~~e~~~~~-----~~g~~~i~~~ 221 (226)
T d2d13a1 149 YGLNE-SWLGRELNYKNLEELKKLSEKYGIHIAGEGGEFETFVLDMPFFKA-KIVIDDAEKFWDG-----LSGKFIIKRA 221 (226)
T ss_dssp TTCCG-GGTTCBCCHHHHHHHHHHHHHHCCCTTCGGGTEEEEEEECTTCSE-EEEEEEEEEEECS-----SCEEEEEEEE
T ss_pred CCCCH-HHcCcCccHHHHHHHHHHHHHcCCCccCCCceEEEEEeeccccCc-ceeEEeeEEEEEC-----CEEEEEEEEE
Confidence 99998 699999986 67778888889999999999999999999999995 9999999999984 3589999999
Q ss_pred EEEec
Q 005967 171 HLEYK 175 (667)
Q Consensus 171 ~l~~k 175 (667)
+|++|
T Consensus 222 ~L~~K 226 (226)
T d2d13a1 222 HLEWK 226 (226)
T ss_dssp EEEEC
T ss_pred EEeeC
Confidence 99987
|
| >d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
| >d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2b33a1 d.79.1.1 (A:2-127) Putative protein synthesis inhibitor TM0215 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
| >d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
| >d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2b33a1 d.79.1.1 (A:2-127) Putative protein synthesis inhibitor TM0215 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
| >d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
| >d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|