Citrus Sinensis ID: 005974

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660------
MQNVVGCNLCLISCFTLYSLAILSYWLRQLLDMESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV
cccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEEEcccccccccccccccHHHHHHcccccEEcccccHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHcccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEEccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHcc
cccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHEHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEccccccccEEEcccccHHHHHccccEEEEcccccHHHccccccccccccEEEEEEccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccHEEccHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccEEEEEEEEEccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEccccccHHHHHHHccc
mqnvvgcnlclisCFTLYSLAILSYWLRQLLdmescdcidtqwppdeLLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTlgleecalwmpsrtglnlELSYTLNnqiqigssvpinlpivtdvfnsaqamrlpyncplARIRLLvgryvppdivAVRVpllhlsnfqindwpelpakSYAVMVLMLptdggrkwrdHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLlletdltpeQRVMIETVLKSSNLLTTLVDdvldlsrledgsleldngpfNLQIVLREVIKLIKPVASCKKLSMTlimapelptyavgdeKRLMQTILNIVGNAVKFTKEGYVSIIASvakpeslsdwrppefypvstdghFYLRVQvndsgcgvppqdipLLFTKFAqsrgsscqtpragLGLAICRRFVNLMgghiwldsegldkgstVTFLVKLgicnnpgspihpvalkgrashgsadltgpkplfrdndqiastksryqrsv
MQNVVGCNLCLISCFTLYSLAILSYWLRQLLDMESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRadeldremgliltqeetgrhvrMLTHEirstldrhtiLKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVlkssnlltTLVDDVLDLSRLEDgsleldngpFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASvakpeslsdwrPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGsadltgpkplfrdndqiastksryqrsv
MQNVVGCNLCLISCFTLYSLAILSYWLRQLLDMESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNllttlvddvldlSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV
***VVGCNLCLISCFTLYSLAILSYWLRQLLDMESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE**************************IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPI****************************************
**NVVGCNLCLISCFTLYSLAILSYWLRQLLDMESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADE*******************MLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI***SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAK************YPVSTDGHFYLRVQVNDSG*******************************LAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG**************************GPKPLFRDNDQIASTKSRYQRS*
MQNVVGCNLCLISCFTLYSLAILSYWLRQLLDMESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ********PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIA**********
****VGCNLCLISCFTLYSLAILSYWLRQLLDMESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKP******RPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNN*******************DLTGPKPLFRDNDQIASTKSRYQRSV
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MQNVVGCNLCLISCFTLYSLAILSYWLRQLLDMESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDxxxxxxxxxxxxxxxxxxxxxxxxxIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query666 2.2.26 [Sep-21-2011]
Q38846613 Ethylene response sensor yes no 0.899 0.977 0.741 0.0
O81122 741 Ethylene receptor OS=Malu N/A no 0.944 0.848 0.692 0.0
Q9ZWL6 738 Ethylene receptor OS=Pass N/A no 0.936 0.845 0.702 0.0
O82436 740 Ethylene receptor 1 OS=Cu N/A no 0.944 0.85 0.697 0.0
Q9XH57 741 Ethylene receptor 2 OS=Pe N/A no 0.944 0.848 0.696 0.0
Q9SSY6 740 Ethylene receptor 1 OS=Cu N/A no 0.944 0.85 0.696 0.0
Q9M7M1 738 Ethylene receptor OS=Prun N/A no 0.932 0.841 0.697 0.0
Q9XH58 740 Ethylene receptor 1 OS=Pe N/A no 0.936 0.843 0.689 0.0
Q41342 754 Ethylene receptor 1 OS=So N/A no 0.935 0.826 0.680 0.0
P49333 738 Ethylene receptor 1 OS=Ar no no 0.930 0.840 0.675 0.0
>sp|Q38846|ERS1_ARATH Ethylene response sensor 1 OS=Arabidopsis thaliana GN=ERS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/600 (74%), Positives = 522/600 (87%), Gaps = 1/600 (0%)

Query: 33  MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 92
           MESCDC +T    D+LLV+YQYISD LIALAYFSIP+ELIYFVQKSAFFPY+WVLMQFG+
Sbjct: 1   MESCDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGA 60

Query: 93  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 152
           FIILCG THFI+LW F +HSKAVA+VMTIAK++CA VSC TALMLVHIIPDLLSVK REL
Sbjct: 61  FIILCGATHFINLWMFFMHSKAVAIVMTIAKVSCAVVSCATALMLVHIIPDLLSVKNREL 120

Query: 153 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 212
           FLK +ADELDREMGLILTQEETGRHVRMLTH IR TLDRHTIL+TTLVELG+TL LEECA
Sbjct: 121 FLKKKADELDREMGLILTQEETGRHVRMLTHGIRRTLDRHTILRTTLVELGKTLCLEECA 180

Query: 213 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 272
           LWMPS++GL L+LS+TL+++IQ+GSSVPINLPI+ ++FNSAQAM +P++CPLA+I   VG
Sbjct: 181 LWMPSQSGLYLQLSHTLSHKIQVGSSVPINLPIINELFNSAQAMHIPHSCPLAKIGPPVG 240

Query: 273 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 332
           RY PP++V+VRVPLLHLSNFQ +DW +L  K YA+MVL+LPTDG RKWRDHELEL++ VA
Sbjct: 241 RYSPPEVVSVRVPLLHLSNFQGSDWSDLSGKGYAIMVLILPTDGARKWRDHELELVENVA 300

Query: 333 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 392
           DQVAVALSHAAILE+SM AR+QLMEQN ALD AR+EAE A+HARNDF AVMNHEMRT MH
Sbjct: 301 DQVAVALSHAAILEESMHARDQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMH 360

Query: 393 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 452
           AII+LSSLLLET+L+PEQRVMIET+LKSSNL+ TL+ DVLDLSRLEDGSL L+N PF+LQ
Sbjct: 361 AIISLSSLLLETELSPEQRVMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQ 420

Query: 453 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 512
            +  EVI LIKP+AS KKLS  LI++ +LPTYA+GDEKRLMQTILNI+GNAVKFTKEGY+
Sbjct: 421 AIFEEVISLIKPIASVKKLSTNLILSADLPTYAIGDEKRLMQTILNIMGNAVKFTKEGYI 480

Query: 513 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-G 571
           SIIAS+ KPESL +   PEF+PV +D HFYL VQV D+GCG+  QDIPLLFTKF Q R G
Sbjct: 481 SIIASIMKPESLQELPSPEFFPVLSDSHFYLCVQVKDTGCGIHTQDIPLLFTKFVQPRTG 540

Query: 572 SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVAL 631
           +       GLGLA+C+RFV LMGG++W++SEGL+KG T +F+++LGICN P S    +AL
Sbjct: 541 TQRNHSGGGLGLALCKRFVGLMGGYMWIESEGLEKGCTASFIIRLGICNGPSSSSGSMAL 600
Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3
>sp|O81122|ETR1_MALDO Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWL6|ETR1_PASED Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O82436|ETR1_CUCMN Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSY6|ETR1_CUCSA Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M7M1|ETR1_PRUPE Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query666
283520948634 ethylene response sensor 1 [Citrus hybri 0.951 1.0 0.998 0.0
4092526634 putative ethylene receptor [Citrus sinen 0.951 1.0 0.990 0.0
224068380636 ethylene receptor 1 [Populus trichocarpa 0.951 0.996 0.812 0.0
237769861636 ethylene receptor [Dimocarpus longan] gi 0.950 0.995 0.798 0.0
225437449636 PREDICTED: ethylene receptor 2 [Vitis vi 0.951 0.996 0.792 0.0
255564264636 ethylene receptor, putative [Ricinus com 0.951 0.996 0.797 0.0
82471111632 ERS type ethylene receptor [Ziziphus juj 0.947 0.998 0.798 0.0
163639425629 ethylene receptor ERS1b [Actinidia delic 0.941 0.996 0.779 0.0
11935116634 ethylene receptor [Carica papaya] 0.947 0.995 0.796 0.0
326534419629 ERS1 [Mangifera indica] 0.942 0.998 0.788 0.0
>gi|283520948|gb|ADB25216.1| ethylene response sensor 1 [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1305 bits (3376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/634 (99%), Positives = 634/634 (100%)

Query: 33  MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 92
           MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS
Sbjct: 1   MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60

Query: 93  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 152
           FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL
Sbjct: 61  FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120

Query: 153 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 212
           FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA
Sbjct: 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 180

Query: 213 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 272
           LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG
Sbjct: 181 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240

Query: 273 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 332
           RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA
Sbjct: 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300

Query: 333 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 392
           DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH
Sbjct: 301 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360

Query: 393 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 452
           AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ
Sbjct: 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420

Query: 453 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 512
           IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV
Sbjct: 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480

Query: 513 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 572
           SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS
Sbjct: 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 540

Query: 573 SCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALK 632
           SCQTPRAGLGLAICRRFVNLMGGHIWL+SEGLDKGSTVTFLVKLGICNNPGSPIHPVALK
Sbjct: 541 SCQTPRAGLGLAICRRFVNLMGGHIWLESEGLDKGSTVTFLVKLGICNNPGSPIHPVALK 600

Query: 633 GRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV 666
           GRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV
Sbjct: 601 GRASHGSADLTGPKPLFRDNDQIASTKSRYQRSV 634

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|4092526|gb|AAC99435.1| putative ethylene receptor [Citrus sinensis] Back     alignment and taxonomy information
>gi|224068380|ref|XP_002302732.1| ethylene receptor 1 [Populus trichocarpa] gi|222844458|gb|EEE82005.1| ethylene receptor 1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|237769861|gb|ACL81481.3| ethylene receptor [Dimocarpus longan] gi|264683475|gb|ACY72568.1| ethylene receptor [Dimocarpus longan] Back     alignment and taxonomy information
>gi|225437449|ref|XP_002272649.1| PREDICTED: ethylene receptor 2 [Vitis vinifera] gi|297743925|emb|CBI36895.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564264|ref|XP_002523129.1| ethylene receptor, putative [Ricinus communis] gi|223537691|gb|EEF39314.1| ethylene receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|82471111|gb|ABB77561.1| ERS type ethylene receptor [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|163639425|gb|ABY28263.1| ethylene receptor ERS1b [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|11935116|gb|AAG41977.1|AF311942_1 ethylene receptor [Carica papaya] Back     alignment and taxonomy information
>gi|326534419|gb|ADZ76430.1| ERS1 [Mangifera indica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query666
TAIR|locus:2058500613 ERS1 "AT2G40940" [Arabidopsis 0.899 0.977 0.728 1.8e-236
UNIPROTKB|Q41341635 Never-ripe "Ethylene receptor" 0.950 0.996 0.696 3.1e-234
UNIPROTKB|Q41342 754 ETR1 "Ethylene receptor 1" [So 0.935 0.826 0.666 5.6e-219
TAIR|locus:2201552 738 ETR1 "ETHYLENE RESPONSE 1" [Ar 0.930 0.840 0.660 9.6e-215
TAIR|locus:2086208 773 ETR2 "ethylene response 2" [Ar 0.860 0.741 0.386 2.4e-92
TAIR|locus:2084968 766 EIN4 "ETHYLENE INSENSITIVE 4" 0.933 0.812 0.341 6e-87
TAIR|locus:2018259645 ERS2 "ethylene response sensor 0.861 0.889 0.341 1e-75
UNIPROTKB|P0AEC5 918 barA [Escherichia coli K-12 (t 0.385 0.279 0.36 1.1e-31
TIGR_CMR|GSU_0718 589 GSU_0718 "sensory box histidin 0.432 0.488 0.333 1.2e-30
UNIPROTKB|Q4K894 917 gacS "Sensor protein GacS" [Ps 0.360 0.261 0.346 1.9e-30
TAIR|locus:2058500 ERS1 "AT2G40940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2280 (807.7 bits), Expect = 1.8e-236, P = 1.8e-236
 Identities = 437/600 (72%), Positives = 512/600 (85%)

Query:    33 MESCDCIDTQWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 92
             MESCDC +T    D+LLV+YQYISD LIALAYFSIP+ELIYFVQKSAFFPY+WVLMQFG+
Sbjct:     1 MESCDCFETHVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGA 60

Query:    93 FIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 152
             FIILCG THFI+LW F +HSKAVA+VMTIAK++CA VSC TALMLVHIIPDLLSVK REL
Sbjct:    61 FIILCGATHFINLWMFFMHSKAVAIVMTIAKVSCAVVSCATALMLVHIIPDLLSVKNREL 120

Query:   153 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECA 212
             FLK +ADELDREMGLILTQEETGRHVRMLTH IR TLDRHTIL+TTLVELG+TL LEECA
Sbjct:   121 FLKKKADELDREMGLILTQEETGRHVRMLTHGIRRTLDRHTILRTTLVELGKTLCLEECA 180

Query:   213 LWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 272
             LWMPS++GL L+LS+TL+++IQ+GSSVPINLPI+ ++FNSAQAM +P++CPLA+I   VG
Sbjct:   181 LWMPSQSGLYLQLSHTLSHKIQVGSSVPINLPIINELFNSAQAMHIPHSCPLAKIGPPVG 240

Query:   273 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 332
             RY PP++V+VRVPLLHLSNFQ +DW +L  K YA+MVL+LPTDG RKWRDHELEL++ VA
Sbjct:   241 RYSPPEVVSVRVPLLHLSNFQGSDWSDLSGKGYAIMVLILPTDGARKWRDHELELVENVA 300

Query:   333 DQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 392
             DQVAVALSHAAILE+SM AR+QLMEQN ALD AR+EAE A+HARNDF AVMNHEMRT MH
Sbjct:   301 DQVAVALSHAAILEESMHARDQLMEQNFALDKARQEAEMAVHARNDFLAVMNHEMRTPMH 360

Query:   393 AIIALSSLLLETDLTPEQRVMIETVLKSSNXXXXXXXXXXXXSRLEDGSLELDNGPFNLQ 452
             AII+LSSLLLET+L+PEQRVMIET+LKSSN            SRLEDGSL L+N PF+LQ
Sbjct:   361 AIISLSSLLLETELSPEQRVMIETILKSSNLVATLISDVLDLSRLEDGSLLLENEPFSLQ 420

Query:   453 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 512
              +  EVI LIKP+AS KKLS  LI++ +LPTYA+GDEKRLMQTILNI+GNAVKFTKEGY+
Sbjct:   421 AIFEEVISLIKPIASVKKLSTNLILSADLPTYAIGDEKRLMQTILNIMGNAVKFTKEGYI 480

Query:   513 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-G 571
             SIIAS+ KPESL +   PEF+PV +D HFYL VQV D+GCG+  QDIPLLFTKF Q R G
Sbjct:   481 SIIASIMKPESLQELPSPEFFPVLSDSHFYLCVQVKDTGCGIHTQDIPLLFTKFVQPRTG 540

Query:   572 SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVAL 631
             +       GLGLA+C+RFV LMGG++W++SEGL+KG T +F+++LGICN P S    +AL
Sbjct:   541 TQRNHSGGGLGLALCKRFVGLMGGYMWIESEGLEKGCTASFIIRLGICNGPSSSSGSMAL 600
GO:0004673 "protein histidine kinase activity" evidence=ISS;TAS
GO:0007165 "signal transduction" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016310 "phosphorylation" evidence=IEA
GO:0018106 "peptidyl-histidine phosphorylation" evidence=IEA
GO:0051740 "ethylene binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0004872 "receptor activity" evidence=TAS
GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS
UNIPROTKB|Q41341 Never-ripe "Ethylene receptor" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
UNIPROTKB|Q41342 ETR1 "Ethylene receptor 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2201552 ETR1 "ETHYLENE RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086208 ETR2 "ethylene response 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084968 EIN4 "ETHYLENE INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018259 ERS2 "ethylene response sensor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0AEC5 barA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0718 GSU_0718 "sensory box histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K894 gacS "Sensor protein GacS" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XH57ETR2_PELHO2, ., 7, ., 1, 3, ., 30.69680.94440.8488N/Ano
O48929ETR1_TOBAC2, ., 7, ., 1, 3, ., 30.67850.92640.8360N/Ano
Q9XH58ETR1_PELHO2, ., 7, ., 1, 3, ., 30.68960.93690.8432N/Ano
Q38846ERS1_ARATH2, ., 7, ., 1, 3, ., 30.74160.89930.9771yesno
Q9M7M1ETR1_PRUPE2, ., 7, ., 1, 3, ., 30.69770.93240.8414N/Ano
O49187ETR2_SOLLC2, ., 7, ., 1, 3, ., 30.66230.92640.8383N/Ano
Q41342ETR1_SOLLC2, ., 7, ., 1, 3, ., 30.68050.93540.8262N/Ano
O81122ETR1_MALDO2, ., 7, ., 1, 3, ., 30.69200.94440.8488N/Ano
Q9ZWL6ETR1_PASED2, ., 7, ., 1, 3, ., 30.70240.93690.8455N/Ano
O49230ETR1_BRAOL2, ., 7, ., 1, 3, ., 30.67730.92640.8394N/Ano
O82436ETR1_CUCMN2, ., 7, ., 1, 3, ., 30.69790.94440.85N/Ano
Q9SSY6ETR1_CUCSA2, ., 7, ., 1, 3, ., 30.69630.94440.85N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.976
3rd Layer2.7.13.30.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query666
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 2e-50
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 7e-48
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 3e-41
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 4e-38
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 1e-33
PRK11466 914 PRK11466, PRK11466, hybrid sensory histidine kinas 2e-31
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 2e-27
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 3e-27
PRK10841 924 PRK10841, PRK10841, hybrid sensory kinase in two-c 8e-26
COG2205890 COG2205, KdpD, Osmosensitive K+ channel histidine 1e-23
TIGR02966333 TIGR02966, phoR_proteo, phosphate regulon sensor k 3e-23
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 3e-22
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 7e-21
COG5002459 COG5002, VicK, Signal transduction histidine kinas 9e-20
pfam01590143 pfam01590, GAF, GAF domain 8e-18
PRK11360607 PRK11360, PRK11360, sensory histidine kinase AtoS; 3e-17
COG4251750 COG4251, COG4251, Bacteriophytochrome (light-regul 2e-15
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 2e-15
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 7e-15
PRK11100475 PRK11100, PRK11100, sensory histidine kinase CreC; 6e-14
TIGR01386457 TIGR01386, cztS_silS_copS, heavy metal sensor kina 6e-14
PRK09303380 PRK09303, PRK09303, adaptive-response sensory kina 7e-13
PRK10490895 PRK10490, PRK10490, sensor protein KdpD; Provision 1e-12
PRK11006430 PRK11006, phoR, phosphate regulon sensor protein; 2e-12
PRK10549466 PRK10549, PRK10549, signal transduction histidine- 4e-11
PRK10364457 PRK10364, PRK10364, sensor protein ZraS; Provision 7e-11
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 3e-10
PRK10618 894 PRK10618, PRK10618, phosphotransfer intermediate p 1e-09
smart00065149 smart00065, GAF, Domain present in phytochromes an 2e-09
PRK13837 828 PRK13837, PRK13837, two-component VirA-like sensor 5e-09
TIGR02916679 TIGR02916, PEP_his_kin, putative PEP-CTERM system 2e-08
PRK09835482 PRK09835, PRK09835, sensor kinase CusS; Provisiona 8e-08
PRK10604433 PRK10604, PRK10604, sensor protein RstB; Provision 3e-07
COG3852363 COG3852, NtrB, Signal transduction histidine kinas 6e-07
COG4192673 COG4192, COG4192, Signal transduction histidine ki 8e-07
PRK09467435 PRK09467, envZ, osmolarity sensor protein; Provisi 1e-05
pfam13492129 pfam13492, GAF_3, GAF domain 3e-05
TIGR02938494 TIGR02938, nifL_nitrog, nitrogen fixation negative 4e-05
COG3290537 COG3290, CitA, Signal transduction histidine kinas 2e-04
COG4191603 COG4191, COG4191, Signal transduction histidine ki 4e-04
TIGR03785703 TIGR03785, marine_sort_HK, proteobacterial dedicat 4e-04
COG2203175 COG2203, FhlA, FOG: GAF domain [Signal transductio 7e-04
PRK09470461 PRK09470, cpxA, two-component sensor protein; Prov 0.001
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information 
 Score =  188 bits (481), Expect = 2e-50
 Identities = 105/289 (36%), Positives = 158/289 (54%), Gaps = 33/289 (11%)

Query: 356 ME-QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMI 414
           ME QNV LD A++ A++A   +++F A M+HE+RT ++ +I  +   L+T LTP QR  +
Sbjct: 272 MEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYL 331

Query: 415 ETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMT 474
           +T+ +S+N L  +++D+LD S+LE G L L+N PF+L+  L EV+ L+   A  K L +T
Sbjct: 332 QTIERSANNLLAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELT 391

Query: 475 LIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYP 534
           L + P++P   +GD  RL Q I N+VGNA+KFT+ G  +I   V                
Sbjct: 392 LNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESG--NIDILVELRA------------ 437

Query: 535 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ-----SR---GSSCQTPRAGLGLAIC 586
             ++    L VQ+ D+G G+  +    LF  F Q     SR   G+       GLGL I 
Sbjct: 438 -LSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGT-------GLGLVIT 489

Query: 587 RRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPV-ALKGR 634
           ++ VN MGG I   S+  ++GST  F + L +  NP     P   L G+
Sbjct: 490 QKLVNEMGGDISFHSQ-PNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGK 537

Length = 919
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional Back     alignment and domain information
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase Back     alignment and domain information
>gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated Back     alignment and domain information
>gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional Back     alignment and domain information
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase Back     alignment and domain information
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional Back     alignment and domain information
>gnl|CDD|236724 PRK10604, PRK10604, sensor protein RstB; Provisional Back     alignment and domain information
>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236531 PRK09467, envZ, osmolarity sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|222174 pfam13492, GAF_3, GAF domain Back     alignment and domain information
>gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL Back     alignment and domain information
>gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>gnl|CDD|225113 COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236532 PRK09470, cpxA, two-component sensor protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 666
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
PRK11091 779 aerobic respiration control sensor protein ArcB; P 100.0
PRK10618 894 phosphotransfer intermediate protein in two-compon 100.0
PRK10490895 sensor protein KdpD; Provisional 100.0
PRK13837 828 two-component VirA-like sensor kinase; Provisional 100.0
PRK10841 924 hybrid sensory kinase in two-component regulatory 100.0
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 100.0
PRK15347 921 two component system sensor kinase SsrA; Provision 100.0
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 100.0
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 100.0
COG5002459 VicK Signal transduction histidine kinase [Signal 100.0
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 100.0
PRK09303380 adaptive-response sensory kinase; Validated 100.0
PRK09959 1197 hybrid sensory histidine kinase in two-component r 100.0
COG4251750 Bacteriophytochrome (light-regulated signal transd 100.0
PRK11006430 phoR phosphate regulon sensor protein; Provisional 100.0
COG3275557 LytS Putative regulator of cell autolysis [Signal 99.97
COG4191603 Signal transduction histidine kinase regulating C4 99.97
PRK10604433 sensor protein RstB; Provisional 99.97
COG3852363 NtrB Signal transduction histidine kinase, nitroge 99.97
PRK10364457 sensor protein ZraS; Provisional 99.97
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.97
PRK10815485 sensor protein PhoQ; Provisional 99.97
PRK10755356 sensor protein BasS/PmrB; Provisional 99.96
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.96
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.96
PRK09835482 sensor kinase CusS; Provisional 99.95
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.95
PRK13557 540 histidine kinase; Provisional 99.95
PRK09470461 cpxA two-component sensor protein; Provisional 99.95
PRK11100475 sensory histidine kinase CreC; Provisional 99.95
PRK10337449 sensor protein QseC; Provisional 99.95
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.95
PRK09467435 envZ osmolarity sensor protein; Provisional 99.95
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.95
KOG0519786 consensus Sensory transduction histidine kinase [S 99.95
COG5000712 NtrY Signal transduction histidine kinase involved 99.94
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.94
PRK11360607 sensory histidine kinase AtoS; Provisional 99.94
PRK11644495 sensory histidine kinase UhpB; Provisional 99.93
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.92
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.92
PRK13560807 hypothetical protein; Provisional 99.91
COG4192673 Signal transduction histidine kinase regulating ph 99.9
COG3290537 CitA Signal transduction histidine kinase regulati 99.88
PRK11086542 sensory histidine kinase DcuS; Provisional 99.87
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.87
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.85
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.81
PRK13559361 hypothetical protein; Provisional 99.81
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.79
COG4585365 Signal transduction histidine kinase [Signal trans 99.76
PRK10547670 chemotaxis protein CheA; Provisional 99.69
COG4564459 Signal transduction histidine kinase [Signal trans 99.65
COG3920221 Signal transduction histidine kinase [Signal trans 99.56
COG0643716 CheA Chemotaxis protein histidine kinase and relat 99.53
PRK04184 535 DNA topoisomerase VI subunit B; Validated 99.47
COG2972456 Predicted signal transduction protein with a C-ter 99.45
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 99.44
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.25
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 99.23
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 99.22
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.22
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 99.18
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.16
PRK03660146 anti-sigma F factor; Provisional 99.13
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.11
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 99.09
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 99.09
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 99.02
PRK04069161 serine-protein kinase RsbW; Provisional 99.01
TIGR01817534 nifA Nif-specific regulatory protein. This model r 98.82
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 98.76
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 98.76
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 98.61
PF14501100 HATPase_c_5: GHKL domain 98.57
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 98.51
PRK05022509 anaerobic nitric oxide reductase transcription reg 98.48
COG3605 756 PtsP Signal transduction protein containing GAF an 98.44
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 98.34
smart00065149 GAF Domain present in phytochromes and cGMP-specif 98.3
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.3
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 98.28
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 98.21
TIGR00585 312 mutl DNA mismatch repair protein MutL. All protein 97.96
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 97.93
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 97.89
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 97.68
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 97.37
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 97.34
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 97.33
PRK13558665 bacterio-opsin activator; Provisional 97.3
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 96.17
PRK05644 638 gyrB DNA gyrase subunit B; Validated 95.83
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 95.8
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 95.76
PF0756876 HisKA_2: Histidine kinase; InterPro: IPR011495 Two 95.51
TIGR02851180 spore_V_T stage V sporulation protein T. Members o 95.36
PRK14083 601 HSP90 family protein; Provisional 95.21
PRK05218 613 heat shock protein 90; Provisional 94.79
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 94.68
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 94.48
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 94.29
COG1956163 GAF domain-containing protein [Signal transduction 93.89
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 93.6
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 93.54
COG5385214 Uncharacterized protein conserved in bacteria [Fun 93.31
COG5381184 Uncharacterized protein conserved in bacteria [Fun 93.22
PF10090182 DUF2328: Uncharacterized protein conserved in bact 93.22
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 92.95
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 92.59
PTZ00130 814 heat shock protein 90; Provisional 92.52
COG4251 750 Bacteriophytochrome (light-regulated signal transd 90.3
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 89.38
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 87.72
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 87.51
PF1468962 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do 86.35
PRK10963223 hypothetical protein; Provisional 85.43
PLN03237 1465 DNA topoisomerase 2; Provisional 84.15
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 83.56
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=9.7e-45  Score=386.91  Aligned_cols=391  Identities=22%  Similarity=0.325  Sum_probs=312.9

Q ss_pred             HHHHHHHHHHHHhhhhchhHHhHHHHHHHHHHhcccchhHHHHHHHHHHHhhcCCCeEEEEccCCCCCeEEEEEeecccc
Q 005974          154 LKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI  233 (666)
Q Consensus       154 ~~~~a~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~  233 (666)
                      ..+++.+++++.+..++++.+.+.++++++.+..+...++++..+.+++.++++. ++.+++++.++....+.+...   
T Consensus       488 t~~Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~~~~~-~v~i~l~~~~~~~~~~~~~~~---  563 (890)
T COG2205         488 TGNLTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIASLLNQ-RVVILLPDDNGKLQPLGNPDG---  563 (890)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC-ceEEEEecCCcccccccCCcc---
Confidence            4667888999999999999999999999999999999999999999999999988 677778876554421111100   


Q ss_pred             ccCccccc-CChhHHHHhcccCceEccCCCcchhhhccccccCCCCceEEeecccccCCccccCCCCcCcccceEEEEEe
Q 005974          234 QIGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML  312 (666)
Q Consensus       234 ~~~~~~~~-~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~  312 (666)
                           +.. +......++.++++-             ..+....|....+..|              +..++...||+.+
T Consensus       564 -----l~~~d~aaa~W~~~~~~~A-------------G~gTdTlpg~~~~~lP--------------l~~~~~~~gvlgv  611 (890)
T COG2205         564 -----LSADDRAAAQWAFENGKPA-------------GAGTDTLPGAKYLYLP--------------LKSGGKVLGVLGV  611 (890)
T ss_pred             -----ccHHHHHHhhchhhCCCcc-------------ccCCCCCCCCceeEee--------------cccCCceEEEEEe
Confidence                 111 111112222222210             0112223333444445              5556677899998


Q ss_pred             eCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005974          313 PTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH  392 (666)
Q Consensus       313 ~~~~~~~~~~~e~~ll~~va~~~a~al~~a~l~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~  392 (666)
                      .........+++..++..+++|+|.|+++..+.++..+.+-+               .+..+.+++|++++||||||||+
T Consensus       612 ~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~---------------~e~E~lRsaLL~sISHDLRTPLt  676 (890)
T COG2205         612 EPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLA---------------AERERLRSALLASISHDLRTPLT  676 (890)
T ss_pred             cCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhccccCcHH
Confidence            888666789999999999999999999988877665443311               12234588999999999999999


Q ss_pred             HHHHHHHHHhcC--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccceeHHHHHHHHHHHHHHHhhcC
Q 005974          393 AIIALSSLLLET--DLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCK  469 (666)
Q Consensus       393 ~I~~~~~~l~~~--~~~-~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~  469 (666)
                      +|.|.++.|...  .++ ++..+.+..|.+.++++..++++|+|++|+++|...++.++..+.+++.+++..++...  .
T Consensus       677 ~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~~~~veEvVg~Al~r~~k~~--~  754 (890)
T COG2205         677 AIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEEVVGEALQRLRKRF--T  754 (890)
T ss_pred             HHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccchhhHHHHHHHHHHHhhhhc--C
Confidence            999999999864  344 44788999999999999999999999999999999999999999999999999888664  4


Q ss_pred             CceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEe
Q 005974          470 KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVN  548 (666)
Q Consensus       470 ~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~  548 (666)
                      +..+.++++.+++. +..|...+.||+.||++||+||++++. +.+.+....++                    +.|+|.
T Consensus       755 ~~~i~v~~~~dl~l-i~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~--------------------v~~~V~  813 (890)
T COG2205         755 GHKIVVSVPVDLPL-IHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVEREN--------------------VVFSVI  813 (890)
T ss_pred             CceEEEecCCCCce-EecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecce--------------------EEEEEE
Confidence            44577777788775 778999999999999999999999865 77777766543                    999999


Q ss_pred             ecCCCCCCCChhhhhccccccCCCCCCCCCccchHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 005974          549 DSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN  620 (666)
Q Consensus       549 D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~I~v~S~~~g~Gt~~~i~lP~~~~~  620 (666)
                      |+|+|||+++.++||++||+..+... ..|+||||+||+.+++.|||+|++++. +++|++|+|.||....+
T Consensus       814 DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G~GLGLsIc~~iv~ahgG~I~a~~~-~~gGa~f~~~LP~~~~~  883 (890)
T COG2205         814 DEGPGIPEGELERIFDKFYRGNKESA-TRGVGLGLAICRGIVEAHGGTISAENN-PGGGAIFVFTLPVEEDP  883 (890)
T ss_pred             eCCCCCChhHHHHhhhhhhcCCCCCC-CCCccccHHHHHHHHHHcCCeEEEEEc-CCCceEEEEEeecCCCC
Confidence            99999999999999999999876554 669999999999999999999999998 89999999999987554

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>TIGR02851 spore_V_T stage V sporulation protein T Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B Back     alignment and domain information
>PRK10963 hypothetical protein; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query666
3dge_A258 Structure Of A Histidine Kinase-response Regulator 4e-16
2c2a_A258 Structure Of The Entire Cytoplasmic Portion Of A Se 5e-16
3sl2_A177 Atp Forms A Stable Complex With The Essential Histi 4e-11
4ew8_A268 Crystal Structure Of A C-Terminal Part Of Tyrosine 2e-07
3d36_A244 How To Switch Off A Histidine Kinase: Crystal Struc 3e-06
3a0r_A349 Crystal Structure Of Histidine Kinase Thka (Tm1359) 6e-06
3a0t_A152 Catalytic Domain Of Histidine Kinase Thka (Tm1359) 3e-05
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 258 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 31/242 (12%)
Query: 376 RNDFRAVMNHEMRTLMHAIIALSSLLL----ETDLTPEQRVMIETVLKSSNXXXXXXXXX 431
           + +F A ++HE+RT + AI A +  +     E DL+   +  +E ++  SN         
Sbjct: 20  KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLST-LKEFLEVIIDQSNHLENLLNEL 78
Query: 432 XXXSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKR 491
              SRLE  SL+++    +L  ++   +  IK  AS   +++        P  A  D  R
Sbjct: 79  LDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTR 138
Query: 492 LMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQV 547
           + Q +LN++ N VK++K    + YV +I                      DG   + V+ 
Sbjct: 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILD------------------EKDGGVLIIVE- 179
Query: 548 NDSGCGVPPQDIPLLFTKFAQSRGS-SCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK 606
            D+G G+P      +F +F +   S + + P  GLGLAI +  V L GG IW++SE + K
Sbjct: 180 -DNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGK 237
Query: 607 GS 608
           GS
Sbjct: 238 GS 239
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 Back     alignment and structure
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 Back     alignment and structure
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase (Divl) From Caulobacter Crescentus Cb15 At 2.50 A Resolution Length = 268 Back     alignment and structure
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of Geobacillus Stearothermophilus Kinb With The Inhibitor Sda Length = 244 Back     alignment and structure
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In Complex With Response Regulator Protein Trra (Tm1360) Length = 349 Back     alignment and structure
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In Complex With Adp And Mg Ion (Trigonal) Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query666
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 3e-69
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 2e-61
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 7e-30
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 5e-29
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 3e-28
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 1e-27
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 6e-24
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 6e-24
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 1e-22
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 1e-22
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 3e-21
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 5e-21
3p01_A184 Two-component response regulator; PSI-2, midwest c 2e-19
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 2e-19
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 2e-19
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 3e-18
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 6e-18
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 7e-18
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 7e-15
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 8e-14
4fmt_A228 CHPT protein; A phosphotransfer protein, A two-com 2e-10
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 2e-09
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 3e-09
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2qyb_A181 Membrane protein, putative; GAF domain, domain of 9e-07
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 2e-06
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 2e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 7e-06
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 2e-05
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 4e-04
2ayx_A254 Sensor kinase protein RCSC; two independent struct 7e-04
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score =  225 bits (577), Expect = 3e-69
 Identities = 68/272 (25%), Positives = 119/272 (43%), Gaps = 35/272 (12%)

Query: 345 LEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET 404
               +   + +++   AL        +A   + DF   +++E+RT +  II  S LL   
Sbjct: 11  SSGLVPRGSHMLQS--ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERA 68

Query: 405 D-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIK 463
           D ++   R  +  V  ++  L   +DDVLD+++++ G + L+     +  +L    +   
Sbjct: 69  DGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERAL 128

Query: 464 PVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPE 522
             A    +++ +    ++     GD KRL QT+ ++V NA++ T   G V++ A  A  E
Sbjct: 129 KDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALGE 187

Query: 523 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR--GSSCQTPRAG 580
                               +R+ V+D+G GVP      +F +F      G        G
Sbjct: 188 --------------------VRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGP-------G 220

Query: 581 LGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 612
           LGLA+ +  V L GG + L+SE    GST T 
Sbjct: 221 LGLALVKALVELHGGWVALESE-PGNGSTFTC 251
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Length = 160 Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 Back     alignment and structure
>4fmt_A CHPT protein; A phosphotransfer protein, A two-component signaling pathway structural genomics, joint center for structural genomics; 2.30A {Caulobacter crescentus} Length = 228 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Length = 181 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Length = 169 Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query666
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 100.0
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 100.0
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 99.98
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 99.97
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 99.97
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 99.97
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 99.97
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 99.97
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.97
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 99.96
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.96
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 99.94
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 99.93
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 99.91
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 99.9
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 99.89
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 99.89
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 99.89
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 99.88
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 99.87
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 99.82
3zxo_A129 Redox sensor histidine kinase response regulator; 99.78
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 99.75
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 99.65
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.57
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.56
3p01_A184 Two-component response regulator; PSI-2, midwest c 99.45
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 99.36
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 99.35
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 99.34
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 99.3
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 99.28
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 99.26
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 99.25
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 99.21
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 99.17
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 99.14
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 99.09
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.01
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 98.99
2qyb_A181 Membrane protein, putative; GAF domain, domain of 98.97
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 98.94
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 98.94
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 98.94
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 98.93
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 98.9
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 98.89
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 98.85
3hcy_A151 Putative two-component sensor histidine kinase PR; 98.85
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 98.83
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 98.79
1vhm_A195 Protein YEBR; structural genomics, unknown functio 98.69
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 98.66
3nhq_A505 Bacteriophytochrome; photoreceptor, PAS, signaling 98.66
4e04_A327 Bacteriophytochrome (light-regulated signal trans 98.62
2ool_A337 Sensor protein; bacteriophytochrome, photoconversi 98.62
3zq5_A520 Phytochrome-like protein CPH1; arginine finger, ta 98.61
3s7o_A343 Bacteriophytochrome; biliverdin, PAS, GAF, photore 98.59
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 98.45
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 98.44
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 98.39
1b63_A 333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.36
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.34
1h7s_A 365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.32
3na3_A 348 DNA mismatch repair protein MLH1; MUTL protein hom 98.31
3eea_A162 GAF domain/HD domain protein; structural genomics, 98.28
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.27
3mm4_A 206 Histidine kinase homolog; receiver domain, CKI1, c 98.26
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 98.15
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.13
1kij_A 390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.13
4eho_A635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 98.12
3h4l_A 367 DNA mismatch repair protein PMS1; ATP binding, DNA 98.08
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 98.07
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 97.69
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 97.47
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 97.38
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 97.33
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 97.29
1s16_A 390 Topoisomerase IV subunit B; two-domain protein com 97.2
1ei1_A 391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 96.95
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 96.87
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 96.87
3peh_A281 Endoplasmin homolog; structural genomics, structur 96.69
1y4s_A 559 Chaperone protein HTPG; HSP90, molecular chaperone 96.48
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 96.48
3cwv_A 369 DNA gyrase, B subunit, truncated; structural genom 96.39
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 96.37
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 96.3
4duh_A220 DNA gyrase subunit B; structure-based drug design, 96.24
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 96.17
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 95.7
1zxm_A 400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 95.69
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 95.6
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 95.51
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 95.37
4eu0_A298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 95.29
1pvg_A 418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 94.62
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 93.84
2w1r_A123 Spovt, stage V sporulation protein T; regulatory G 93.68
3lnu_A 408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 93.54
3e98_A252 GAF domain of unknown function; structural genomic 91.94
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 87.44
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-35  Score=296.34  Aligned_cols=230  Identities=29%  Similarity=0.472  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccc
Q 005974          368 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLEL  444 (666)
Q Consensus       368 ~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l  444 (666)
                      ++++..+.+.+|++.++|||||||++|.++++++.+.   ...++.+++++.+.+.++++..++++++++++++.+...+
T Consensus        12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~   91 (258)
T 2c2a_A           12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQI   91 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Confidence            3445556688999999999999999999999998753   2345568899999999999999999999999999888888


Q ss_pred             cccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCC----cEEEEEEeec
Q 005974          445 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAK  520 (666)
Q Consensus       445 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g----~v~i~~~~~~  520 (666)
                      ..+++++.++++++...+...+..+++.+.++.+...+..+.+|+..+.+++.||++||+||++.+    .+.+.+...+
T Consensus        92 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~  171 (258)
T 2c2a_A           92 NREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKD  171 (258)
T ss_dssp             CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEET
T ss_pred             ccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCC
Confidence            888999999999999999999999999998887655555677899999999999999999999753    3555544333


Q ss_pred             CCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCC-CCCccchHHHHHHHHHHhCCEEEE
Q 005974          521 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGGHIWL  599 (666)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG~I~v  599 (666)
                      +                    .+.|+|+|+|+||+++..+++|+||++.+..... ..|+||||++||++++.|||+|++
T Consensus       172 ~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v  231 (258)
T 2c2a_A          172 G--------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV  231 (258)
T ss_dssp             T--------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred             C--------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEE
Confidence            2                    3899999999999999999999999997755332 359999999999999999999999


Q ss_pred             EecCCCCceEEEEEEEecC
Q 005974          600 DSEGLDKGSTVTFLVKLGI  618 (666)
Q Consensus       600 ~S~~~g~Gt~~~i~lP~~~  618 (666)
                      +|. +|+||+|+|.||...
T Consensus       232 ~s~-~~~Gt~f~i~lP~~~  249 (258)
T 2c2a_A          232 ESE-VGKGSRFFVWIPKDR  249 (258)
T ss_dssp             EEE-TTTEEEEEEEEECCC
T ss_pred             Eec-CCCCcEEEEEeeCCC
Confidence            998 899999999999753
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Back     alignment and structure
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis} Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa} Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 666
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 1e-33
d1ysra1148 d.122.1.3 (A:299-446) Sensor-type histidine kinase 1e-27
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 1e-26
d1bxda_161 d.122.1.3 (A:) Histidine kinase domain of the osmo 4e-26
d1id0a_146 d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche 1e-24
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 4e-20
d1r62a_156 d.122.1.3 (A:) Nitrogen regulation protein NtrB, C 2e-18
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 5e-15
d1i58a_189 d.122.1.3 (A:) Histidine kinase CheA {Thermotoga m 3e-12
d2c2aa189 a.30.2.1 (A:232-320) Sensor histidine kinase TM085 6e-09
d1joya_67 a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c 7e-08
d1y8oa2125 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas 5e-07
d1mc0a2154 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phos 5e-05
d2k2na1170 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synec 4e-04
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score =  124 bits (312), Expect = 1e-33
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 18/171 (10%)

Query: 443 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGN 502
           +++    +L  ++   +  IK  AS   +++        P  A  D  R+ Q +LN++ N
Sbjct: 1   QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNN 60

Query: 503 AVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 562
            VK++K+                         +       + + V D+G G+P      +
Sbjct: 61  GVKYSKKDAPDKYVK---------------VILDEKDG-GVLIIVEDNGIGIPDHAKDRI 104

Query: 563 FTKFAQSRGS-SCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 612
           F +F +   S + + P  GLGLAI +  V L GG IW++SE + KGS    
Sbjct: 105 FEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGKGSRFFV 154
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Length = 189 Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query666
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 99.97
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.96
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.96
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.95
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.93
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 99.92
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.92
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.67
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.51
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 99.47
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.4
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.31
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.28
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.15
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.08
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 98.77
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 98.75
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 98.66
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 98.64
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 98.56
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 98.42
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 98.37
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 98.22
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 97.71
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 97.34
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 96.0
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 95.89
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 95.45
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 95.44
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 92.55
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 90.91
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 90.4
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=8.8e-31  Score=239.52  Aligned_cols=153  Identities=29%  Similarity=0.470  Sum_probs=129.8

Q ss_pred             ccccceeHHHHHHHHHHHHHHHhhcCCceEEEEeCCCCCceEEecHHHHHHHHHHHHHHHhhccCCCc----EEEEEEee
Q 005974          444 LDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVA  519 (666)
Q Consensus       444 l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~----v~i~~~~~  519 (666)
                      ++.+++|+.+++++++..++..+..+++.+.++.+.+.+..+.+|+.++.||+.||++||+||+++|.    +.+.....
T Consensus         2 l~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~   81 (161)
T d2c2aa2           2 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK   81 (161)
T ss_dssp             CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred             CccEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCEEEEECHHHHHHHHHHHHHHHHHhhhcCCCcceeeEEEEec
Confidence            45678999999999999999999999999999887777767889999999999999999999998754    44444333


Q ss_pred             cCCCCCCCCCCCCCccCCCCceEEEEEEeecCCCCCCCChhhhhccccccCCCCCC-CCCccchHHHHHHHHHHhCCEEE
Q 005974          520 KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGGHIW  598 (666)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG~I~  598 (666)
                      ++                    ++.|+|+|+|+|||+++++++|+|||+.+...+. ..|+||||++||++++.|||+|+
T Consensus        82 ~~--------------------~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~i~  141 (161)
T d2c2aa2          82 DG--------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIW  141 (161)
T ss_dssp             TT--------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEE
T ss_pred             CC--------------------EEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHHHHHHHHHHCCCEEE
Confidence            22                    4999999999999999999999999998765433 35999999999999999999999


Q ss_pred             EEecCCCCceEEEEEEEec
Q 005974          599 LDSEGLDKGSTVTFLVKLG  617 (666)
Q Consensus       599 v~S~~~g~Gt~~~i~lP~~  617 (666)
                      ++|. +|+||+|+|+||..
T Consensus       142 v~s~-~~~Gt~f~i~lP~~  159 (161)
T d2c2aa2         142 VESE-VGKGSRFFVWIPKD  159 (161)
T ss_dssp             EEEE-TTTEEEEEEEEECC
T ss_pred             EEec-CCCeeEEEEEEEcc
Confidence            9999 89999999999974
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure